Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 73 of 344
Found at i:23765398 original size:22 final size:22
Alignment explanation
Indices: 23765373--23765417 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
23765363 AAGATGAGAA
*
23765373 TGGATTAAATTTGTGCTTTATT
1 TGGATGAAATTTGTGCTTTATT
23765395 TGGATGAAATTTGTGCTTTATT
1 TGGATGAAATTTGTGCTTTATT
23765417 T
1 T
23765418 TTACTTATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.22, C:0.04, G:0.20, T:0.53
Consensus pattern (22 bp):
TGGATGAAATTTGTGCTTTATT
Found at i:23782182 original size:46 final size:47
Alignment explanation
Indices: 23782041--23782208 Score: 191
Period size: 46 Copynumber: 3.6 Consensus size: 47
23782031 GTGAGCTAGC
* * *
23782041 GTAAGACATGTCTGGGACATGCATCGGCCAC-ATTA-TGAGAGCTAGT
1 GTAAGACATGTCTGGGACATGCATCGGCCTCGA-GACTGAGAGCCAGT
* * * * *
23782087 GTAAGACCATGTCTGGGACATGGCATCAGCATTGAGTC-GAGTGCCAGT
1 GTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACTGAGAGCCAGT
* *
23782135 GTAAGACATGTCTGTGACATGCATCGGCCTCGAGACTTA-AGCCAGT
1 GTAAGACATGTCTGGGACATGCATCGGCCTCGAGACTGAGAGCCAGT
23782181 GTAAGACATGTCTGGGACATGCATCGGC
1 GTAAGACATGTCTGGGACATGCATCGGC
23782209 TACGAGATGT
Statistics
Matches: 101, Mismatches: 16, Indels: 10
0.80 0.13 0.08
Matches are distributed among these distances:
46 51 0.50
47 28 0.28
48 21 0.21
49 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.23
Consensus pattern (47 bp):
GTAAGACATGTCTGGGACATGCATCGGCCTCGAGACTGAGAGCCAGT
Found at i:23783266 original size:15 final size:15
Alignment explanation
Indices: 23783246--23783275 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
23783236 CAGAATGTCC
*
23783246 ATGTTTTTGTAAACG
1 ATGTTTTTGCAAACG
23783261 ATGTTTTTGCAAACG
1 ATGTTTTTGCAAACG
23783276 GGCTAGGACA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.10, G:0.20, T:0.43
Consensus pattern (15 bp):
ATGTTTTTGCAAACG
Found at i:23786646 original size:32 final size:32
Alignment explanation
Indices: 23786610--23786673 Score: 78
Period size: 32 Copynumber: 2.0 Consensus size: 32
23786600 TCCATACTTG
23786610 AATTCAT-TTCAATATTCACATCTCAT-TTCATC
1 AATTCATATTC-AT-TTCACATCTCATATTCATC
*
23786642 AATTCATACTTCATTTCTCATCTCATATTCAT
1 AATTCATA-TTCATTTCACATCTCATATTCAT
23786674 TTTTAATCTT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
32 18 0.64
33 7 0.25
34 3 0.11
ACGTcount: A:0.30, C:0.25, G:0.00, T:0.45
Consensus pattern (32 bp):
AATTCATATTCATTTCACATCTCATATTCATC
Found at i:23786682 original size:18 final size:19
Alignment explanation
Indices: 23786632--23786682 Score: 52
Period size: 18 Copynumber: 2.7 Consensus size: 19
23786622 TATTCACATC
23786632 TCATTTCATCAAT-TCATACT
1 TCATTTC-T-AATCTCATACT
*
23786652 TCATTTCTCATCTCATA-T
1 TCATTTCTAATCTCATACT
*
23786670 TCATTTTTAATCT
1 TCATTTCTAATCT
23786683 TTGCCATTTC
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 14 0.52
19 6 0.22
20 7 0.26
ACGTcount: A:0.25, C:0.24, G:0.00, T:0.51
Consensus pattern (19 bp):
TCATTTCTAATCTCATACT
Found at i:23787938 original size:35 final size:34
Alignment explanation
Indices: 23787873--23787938 Score: 89
Period size: 35 Copynumber: 1.9 Consensus size: 34
23787863 TTTTAATTTC
* *
23787873 ATTCATTATTATTATATTATAATATCTACATTAG
1 ATTCATTATTATTATATTATAACATATACATTAG
23787907 ATTCATT-TTATTTATTATTATAACATATACAT
1 ATTCATTATTA-TTA-TATTATAACATATACAT
23787939 ATATATATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
33 3 0.11
34 10 0.36
35 15 0.54
ACGTcount: A:0.38, C:0.09, G:0.02, T:0.52
Consensus pattern (34 bp):
ATTCATTATTATTATATTATAACATATACATTAG
Found at i:23794173 original size:20 final size:23
Alignment explanation
Indices: 23794143--23794198 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 23
23794133 CTTTTAAGTT
23794143 TTTTATTTATTTA-CTTT-TTAA
1 TTTTATTTATTTACCTTTATTAA
*
23794164 TTTT-TTTATTTATCCTTTATTTA
1 TTTTATTTATTTA-CCTTTATTAA
23794187 TTTTATTTATTT
1 TTTTATTTATTT
23794199 GTTTATTATT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
20 8 0.27
21 4 0.13
22 4 0.13
23 7 0.23
24 7 0.23
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.75
Consensus pattern (23 bp):
TTTTATTTATTTACCTTTATTAA
Found at i:23794184 original size:11 final size:9
Alignment explanation
Indices: 23794143--23794198 Score: 55
Period size: 8 Copynumber: 6.3 Consensus size: 9
23794133 CTTTTAAGTT
23794143 TTTTATTTA
1 TTTTATTTA
*
23794152 -TTTACTT-
1 TTTTATTTA
*
23794159 TTTAATTT-
1 TTTTATTTA
23794167 TTTTATTTA
1 TTTTATTTA
23794176 TCCTTTATTTA
1 T--TTTATTTA
23794187 TTTTATTTA
1 TTTTATTTA
23794196 TTT
1 TTT
23794199 GTTTATTATT
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
8 18 0.46
9 12 0.31
11 9 0.23
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.75
Consensus pattern (9 bp):
TTTTATTTA
Found at i:23794207 original size:20 final size:19
Alignment explanation
Indices: 23794148--23794208 Score: 59
Period size: 20 Copynumber: 3.1 Consensus size: 19
23794138 AAGTTTTTTA
* *
23794148 TTTATTTACTTTTTAATTTT
1 TTTATTTA-TTTTTTATTAT
**
23794168 TTTATTTATCCTTTATTTAT
1 TTTATTTATTTTTTA-TTAT
23794188 TTTATTTATTTGTTTATTAT
1 TTTATTTATTT-TTTATTAT
23794208 T
1 T
23794209 GGTTTTATAA
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
19 4 0.12
20 25 0.76
21 4 0.12
ACGTcount: A:0.20, C:0.05, G:0.02, T:0.74
Consensus pattern (19 bp):
TTTATTTATTTTTTATTAT
Found at i:23794263 original size:24 final size:24
Alignment explanation
Indices: 23794234--23794288 Score: 78
Period size: 23 Copynumber: 2.3 Consensus size: 24
23794224 GAAATGTATA
*
23794234 TTTTAAATGTTTTATAATAT-TATT
1 TTTTAAATATTTTA-AATATATATT
23794258 TTTTAAA-ATTTTAAATATATATT
1 TTTTAAATATTTTAAATATATATT
23794281 TTTTAAAT
1 TTTTAAAT
23794289 TATTATTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
22 5 0.18
23 16 0.57
24 7 0.25
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (24 bp):
TTTTAAATATTTTAAATATATATT
Found at i:23794294 original size:38 final size:34
Alignment explanation
Indices: 23794243--23794323 Score: 110
Period size: 38 Copynumber: 2.3 Consensus size: 34
23794233 ATTTTAAATG
23794243 TTTTATAA-TATTATTTTTTAAAATTTTAAATATATATT
1 TTTTA-AATTATTATTTTTT-AAA-TTTAAATAT-TA-T
23794281 TTTTAAATTATTATTTTTTAAATTTAAATATTAT
1 TTTTAAATTATTATTTTTTAAATTTAAATATTAT
23794315 TTTTAAATT
1 TTTTAAATT
23794324 TTAAATAAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
34 10 0.24
35 2 0.05
36 9 0.21
37 5 0.12
38 16 0.38
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (34 bp):
TTTTAAATTATTATTTTTTAAATTTAAATATTAT
Found at i:23794297 original size:14 final size:16
Alignment explanation
Indices: 23794266--23794323 Score: 66
Period size: 15 Copynumber: 3.6 Consensus size: 16
23794256 TTTTTTAAAA
23794266 TTTTAAA-TATATATT
1 TTTTAAATTATATATT
23794281 TTTTAAATTAT-TATT
1 TTTTAAATTATATATT
*
23794296 TTTTAAATTTAAATATTAT
1 TTTTAAA-TTATATA-T-T
23794315 TTTTAAATT
1 TTTTAAATT
23794324 TTAAATAAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
15 18 0.49
16 6 0.16
17 2 0.05
18 3 0.08
19 8 0.22
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TTTTAAATTATATATT
Found at i:23794314 original size:20 final size:21
Alignment explanation
Indices: 23794234--23794340 Score: 97
Period size: 20 Copynumber: 5.3 Consensus size: 21
23794224 GAAATGTATA
23794234 TTTTAAATGTTTTATAATATTATT
1 TTTTAAA--TTTTA-AATATTATT
23794258 TTTTAAAATTTTAAATATATATT
1 TTTT-AAATTTTAAATAT-TATT
23794281 TTTTAAA---T---TATTATT
1 TTTTAAATTTTAAATATTATT
23794296 TTTTAAA-TTTAAATATTA-T
1 TTTTAAATTTTAAATATTATT
*
23794315 TTTTAAATTTTAAATA-AATT
1 TTTTAAATTTTAAATATTATT
23794335 TTTTAA
1 TTTTAA
23794341 TAATATAAAA
Statistics
Matches: 73, Mismatches: 1, Indels: 22
0.76 0.01 0.23
Matches are distributed among these distances:
15 11 0.15
16 3 0.04
17 1 0.01
19 10 0.14
20 20 0.27
22 8 0.11
23 13 0.18
24 4 0.05
25 3 0.04
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.60
Consensus pattern (21 bp):
TTTTAAATTTTAAATATTATT
Found at i:23794335 original size:19 final size:19
Alignment explanation
Indices: 23794257--23794337 Score: 64
Period size: 19 Copynumber: 4.3 Consensus size: 19
23794247 ATAATATTAT
23794257 TTTTTAAAATTTTAAATATATA
1 TTTTT-AAA-TTTAAATATA-A
*
23794279 TTTTTTAAA-TT--AT-TAT
1 -TTTTTAAATTTAAATATAA
*
23794295 TTTTTAAATTTAAATATTA
1 TTTTTAAATTTAAATATAA
23794314 TTTTTAAATTTTAAATA-AA
1 TTTTTAAA-TTTAAATATAA
23794333 TTTTT
1 TTTTT
23794338 TAATAATATA
Statistics
Matches: 49, Mismatches: 4, Indels: 14
0.73 0.06 0.21
Matches are distributed among these distances:
15 8 0.16
16 2 0.04
17 2 0.04
18 4 0.08
19 15 0.31
20 10 0.20
22 3 0.06
23 5 0.10
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (19 bp):
TTTTTAAATTTAAATATAA
Found at i:23794357 original size:56 final size:56
Alignment explanation
Indices: 23794244--23794374 Score: 128
Period size: 56 Copynumber: 2.3 Consensus size: 56
23794234 TTTTAAATGT
* * ***
23794244 TTTATAATATTATTTTTTAAAATTTTAAATATATATTTTTTAAATTATTATTTTTTAAA
1 TTTA-AATATTA-TTTTT-AAATTTTAAATATATATTTTTTAAAATATAAAAATTTAAA
23794303 TTTAAATATTATTTTTAAATTTTAAATA-A-ATTTTTTAATAATATAAAAAATTTAAA
1 TTTAAATATTATTTTTAAATTTTAAATATATATTTTTTAA-AATAT-AAAAATTTAAA
*
23794359 ---ATATATTATTTTTAAA
1 TTTAAATATTATTTTTAAA
23794375 GATATAACCT
Statistics
Matches: 64, Mismatches: 6, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
53 15 0.23
54 9 0.14
55 5 0.08
56 19 0.30
57 5 0.08
58 7 0.11
59 4 0.06
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (56 bp):
TTTAAATATTATTTTTAAATTTTAAATATATATTTTTTAAAATATAAAAATTTAAA
Found at i:23794450 original size:21 final size:22
Alignment explanation
Indices: 23794403--23794470 Score: 79
Period size: 22 Copynumber: 3.1 Consensus size: 22
23794393 TATTATTTGT
23794403 TTTATAAAATTTTAAACGTATAT-
1 TTTATAAAATTTTAAA--TATATA
23794426 TTTA-AAAATTTTAAATATATA
1 TTTATAAAATTTTAAATATATA
**
23794447 TTTATTTAATTTTAAATATA-A
1 TTTATAAAATTTTAAATATATA
23794468 TTT
1 TTT
23794471 TTTAAATTAT
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
20 5 0.12
21 8 0.20
22 24 0.59
23 4 0.10
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.53
Consensus pattern (22 bp):
TTTATAAAATTTTAAATATATA
Found at i:23794474 original size:20 final size:22
Alignment explanation
Indices: 23794432--23794475 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
23794422 ATATTTTAAA
23794432 AATTTTAAATATATATTTATTT
1 AATTTTAAATATATATTTATTT
23794454 AATTTTAAATATA-ATTT-TTT
1 AATTTTAAATATATATTTATTT
23794474 AA
1 AA
23794476 ATTATGATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 5 0.23
21 4 0.18
22 13 0.59
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (22 bp):
AATTTTAAATATATATTTATTT
Found at i:23794633 original size:18 final size:19
Alignment explanation
Indices: 23794592--23794636 Score: 90
Period size: 19 Copynumber: 2.4 Consensus size: 19
23794582 GGAAAAAATA
23794592 AAAAAATGATTTATTTGTT
1 AAAAAATGATTTATTTGTT
23794611 AAAAAATGATTTATTTGTT
1 AAAAAATGATTTATTTGTT
23794630 AAAAAAT
1 AAAAAAT
23794637 TATGAATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.42
Consensus pattern (19 bp):
AAAAAATGATTTATTTGTT
Found at i:23794649 original size:18 final size:19
Alignment explanation
Indices: 23794592--23794651 Score: 68
Period size: 19 Copynumber: 3.2 Consensus size: 19
23794582 GGAAAAAATA
**
23794592 AAAAAATGATTTATTTGTT
1 AAAAAATGATGAATTTGTT
**
23794611 AAAAAATGATTTATTTGTT
1 AAAAAATGATGAATTTGTT
*
23794630 AAAAAATTATGAATTT-TT
1 AAAAAATGATGAATTTGTT
23794648 AAAA
1 AAAA
23794652 TATATATGTA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
18 6 0.16
19 32 0.84
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.43
Consensus pattern (19 bp):
AAAAAATGATGAATTTGTT
Found at i:23794685 original size:21 final size:21
Alignment explanation
Indices: 23794655--23794706 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
23794645 TTTAAAATAT
*
23794655 ATATGTATTAAAAAAGTAAAA
1 ATATATATTAAAAAAGTAAAA
* * *
23794676 ATTTATATTAGAAAATTAAAA
1 ATATATATTAAAAAAGTAAAA
23794697 ATATATATTA
1 ATATATATTA
23794707 TAACGACCAC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.37
Consensus pattern (21 bp):
ATATATATTAAAAAAGTAAAA
Found at i:23795729 original size:21 final size:20
Alignment explanation
Indices: 23795687--23795729 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
23795677 CTCAACCTTT
*
23795687 TAATTTTGATCTTCAATATA
1 TAATTTTGATCTTAAATATA
23795707 TAATTTT-ATGCTTAAATTATA
1 TAATTTTGAT-CTTAAA-TATA
23795728 TA
1 TA
23795730 TATAATTGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 2 0.10
20 12 0.60
21 6 0.30
ACGTcount: A:0.37, C:0.07, G:0.05, T:0.51
Consensus pattern (20 bp):
TAATTTTGATCTTAAATATA
Found at i:23797324 original size:30 final size:30
Alignment explanation
Indices: 23797288--23797390 Score: 136
Period size: 30 Copynumber: 3.4 Consensus size: 30
23797278 GACACAGAGT
*
23797288 AGTTCATATCACCCGGACATGGGCGGTTCG
1 AGTTCATATCACCCAGACATGGGCGGTTCG
*
23797318 AGTTCATATCACCCAGACATGGGCGATTCG
1 AGTTCATATCACCCAGACATGGGCGGTTCG
* *
23797348 AGTTCATATAACCCCA-ACATAGGCGGTTCG
1 AGTTCATATCA-CCCAGACATGGGCGGTTCG
* *
23797378 AGTTTATTTCACC
1 AGTTCATATCACC
23797391 AACAGCAACC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
29 2 0.03
30 58 0.91
31 4 0.06
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (30 bp):
AGTTCATATCACCCAGACATGGGCGGTTCG
Found at i:23803574 original size:22 final size:23
Alignment explanation
Indices: 23803548--23803593 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
23803538 CAACCAAACC
23803548 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
23803570 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
23803593 A
1 A
23803594 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:23803599 original size:23 final size:23
Alignment explanation
Indices: 23803555--23803599 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
23803545 ACCAATTCAA
*
23803555 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
23803578 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
23803600 CACATACCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:23810298 original size:14 final size:14
Alignment explanation
Indices: 23810279--23810312 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
23810269 TGCCATTATA
23810279 ACCATAATTAATTT
1 ACCATAATTAATTT
23810293 ACCATAATTAATTT
1 ACCATAATTAATTT
23810307 ACCATA
1 ACCATA
23810313 TATACCAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.44, C:0.18, G:0.00, T:0.38
Consensus pattern (14 bp):
ACCATAATTAATTT
Found at i:23811207 original size:25 final size:25
Alignment explanation
Indices: 23811178--23811225 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
23811168 GCACATTCTC
*
23811178 GAGCCATATAACAGGATGCTTATAT
1 GAGCCATAGAACAGGATGCTTATAT
* *
23811203 GAGCCATGGAACATGATGCTTAT
1 GAGCCATAGAACAGGATGCTTAT
23811226 CTGGGTTATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (25 bp):
GAGCCATAGAACAGGATGCTTATAT
Found at i:23813857 original size:32 final size:32
Alignment explanation
Indices: 23813821--23813881 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
23813811 AAATATTAAA
* *
23813821 TTTTAA-ATTTTTAAATATAATTTAAAAAAACG
1 TTTTAATATCTTTAAA-AAAATTTAAAAAAACG
23813853 TTTTAATATCTTTAAAAAAATTTAAAAAA
1 TTTTAATATCTTTAAAAAAATTTAAAAAA
23813882 TTAATAACTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
32 18 0.69
33 8 0.31
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.43
Consensus pattern (32 bp):
TTTTAATATCTTTAAAAAAATTTAAAAAAACG
Found at i:23814041 original size:32 final size:33
Alignment explanation
Indices: 23813976--23814041 Score: 82
Period size: 33 Copynumber: 2.0 Consensus size: 33
23813966 TGACATATCT
* * *
23813976 TTAAAAATAATATATTTTAAATGTTTTATAATA
1 TTAAAAATAATATATTTAAAATGTTTAAAAATA
23814009 TTAAAAA-AATTATATTTAAAAT-TTTAAAAATA
1 TTAAAAATAA-TATATTTAAAATGTTTAAAAATA
23814041 T
1 T
23814042 ATTTAAAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
32 11 0.38
33 18 0.62
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (33 bp):
TTAAAAATAATATATTTAAAATGTTTAAAAATA
Found at i:23814042 original size:20 final size:20
Alignment explanation
Indices: 23814013--23814103 Score: 101
Period size: 20 Copynumber: 4.2 Consensus size: 20
23814003 ATAATATTAA
23814013 AAAAATTATATTTAAAATTTT
1 AAAAA-TATATTTAAAATTTT
23814034 AAAAATATATTTAAAATTTT
1 AAAAATATATTTAAAATTTT
*
23814054 AAAAATAATATTATAAAAAATTT
1 AAAAAT-ATATT-T-AAAATTTT
* *
23814077 AAAATATACATTTCAAATTTT
1 AAAA-ATATATTTAAAATTTT
23814098 ATAAAA
1 A-AAAA
23814104 CAATAATAAA
Statistics
Matches: 61, Mismatches: 4, Indels: 10
0.81 0.05 0.13
Matches are distributed among these distances:
20 21 0.34
21 18 0.30
22 5 0.08
23 15 0.25
24 2 0.03
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (20 bp):
AAAAATATATTTAAAATTTT
Found at i:23814095 original size:44 final size:41
Alignment explanation
Indices: 23814013--23814108 Score: 111
Period size: 44 Copynumber: 2.2 Consensus size: 41
23814003 ATAATATTAA
* * *
23814013 AAAAATTATATTTAAAATTTTAAAAATATATTTAAAATTTT
1 AAAAATAATATTTAAAAATTTAAAAATACATTTAAAATTTT
*
23814054 AAAAATAATATTATAAAAAATTTAAAATATACATTTCAAATTTT
1 AAAAATAATATT-T-AAAAATTTAAAA-ATACATTTAAAATTTT
*
23814098 ATAAAACAATA
1 A-AAAATAATA
23814109 ATAAACAAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
41 11 0.24
42 1 0.02
43 11 0.24
44 15 0.33
45 8 0.17
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (41 bp):
AAAAATAATATTTAAAAATTTAAAAATACATTTAAAATTTT
Found at i:23816177 original size:66 final size:66
Alignment explanation
Indices: 23816071--23816205 Score: 270
Period size: 66 Copynumber: 2.0 Consensus size: 66
23816061 TCAGAGCCAG
23816071 CTTAATTCTGATGTGACAACATCCCCAACACGAAACCCAATTTCAGCCTAGCAACATGTGTGTAA
1 CTTAATTCTGATGTGACAACATCCCCAACACGAAACCCAATTTCAGCCTAGCAACATGTGTGTAA
23816136 A
66 A
23816137 CTTAATTCTGATGTGACAACATCCCCAACACGAAACCCAATTTCAGCCTAGCAACATGTGTGTAA
1 CTTAATTCTGATGTGACAACATCCCCAACACGAAACCCAATTTCAGCCTAGCAACATGTGTGTAA
23816202 A
66 A
23816203 CTT
1 CTT
23816206 CATAAAATAT
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 69 1.00
ACGTcount: A:0.34, C:0.27, G:0.13, T:0.25
Consensus pattern (66 bp):
CTTAATTCTGATGTGACAACATCCCCAACACGAAACCCAATTTCAGCCTAGCAACATGTGTGTAA
A
Found at i:23816578 original size:16 final size:16
Alignment explanation
Indices: 23816557--23816618 Score: 52
Period size: 16 Copynumber: 3.5 Consensus size: 16
23816547 CCTTGTCTCT
23816557 CCACCATCACTCTTCC
1 CCACCATCACTCTTCC
* *
23816573 CCACCATCGTCCCTCTCCCTCT
1 CCACCA---TCACTCT---TCC
23816595 CCACCATCACTCTTCC
1 CCACCATCACTCTTCC
23816611 CCACCATC
1 CCACCATC
23816619 GTCCCTCTCC
Statistics
Matches: 36, Mismatches: 4, Indels: 12
0.69 0.08 0.23
Matches are distributed among these distances:
16 16 0.44
19 12 0.33
22 8 0.22
ACGTcount: A:0.16, C:0.58, G:0.02, T:0.24
Consensus pattern (16 bp):
CCACCATCACTCTTCC
Found at i:23816604 original size:38 final size:38
Alignment explanation
Indices: 23816553--23816640 Score: 176
Period size: 38 Copynumber: 2.3 Consensus size: 38
23816543 TCACCCTTGT
23816553 CTCTCCACCATCACTCTTCCCCACCATCGTCCCTCTCC
1 CTCTCCACCATCACTCTTCCCCACCATCGTCCCTCTCC
23816591 CTCTCCACCATCACTCTTCCCCACCATCGTCCCTCTCC
1 CTCTCCACCATCACTCTTCCCCACCATCGTCCCTCTCC
23816629 CTCTCCACCATC
1 CTCTCCACCATC
23816641 GTCCCTTCTC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 50 1.00
ACGTcount: A:0.14, C:0.58, G:0.02, T:0.26
Consensus pattern (38 bp):
CTCTCCACCATCACTCTTCCCCACCATCGTCCCTCTCC
Found at i:23816607 original size:19 final size:20
Alignment explanation
Indices: 23816553--23816640 Score: 76
Period size: 19 Copynumber: 4.6 Consensus size: 20
23816543 TCACCCTTGT
23816553 CTCTCCACCATCACTCTTCC
1 CTCTCCACCATCACTCTTCC
* * * *
23816573 C-CACCATCGTCCCTC-TCC
1 CTCTCCACCATCACTCTTCC
23816591 CTCTCCACCATCACTCTTCC
1 CTCTCCACCATCACTCTTCC
* * * *
23816611 C-CACCATCGTCCCTC-TCC
1 CTCTCCACCATCACTCTTCC
23816629 CTCTCCACCATC
1 CTCTCCACCATC
23816641 GTCCCTTCTC
Statistics
Matches: 50, Mismatches: 15, Indels: 7
0.69 0.21 0.10
Matches are distributed among these distances:
18 8 0.16
19 37 0.74
20 5 0.10
ACGTcount: A:0.14, C:0.58, G:0.02, T:0.26
Consensus pattern (20 bp):
CTCTCCACCATCACTCTTCC
Found at i:23816653 original size:22 final size:22
Alignment explanation
Indices: 23816573--23816651 Score: 89
Period size: 22 Copynumber: 3.8 Consensus size: 22
23816563 TCACTCTTCC
23816573 CCACCATCGTCCCTCTCCCTCT
1 CCACCATCGTCCCTCTCCCTCT
* *
23816595 CCACCA---TCACTCT---TCC
1 CCACCATCGTCCCTCTCCCTCT
23816611 CCACCATCGTCCCTCTCCCTCT
1 CCACCATCGTCCCTCTCCCTCT
23816633 CCACCATCGTCCCTTCTCC
1 CCACCATCGTCCC-TCTCC
23816652 TCGTACCTGT
Statistics
Matches: 46, Mismatches: 4, Indels: 13
0.73 0.06 0.21
Matches are distributed among these distances:
16 8 0.17
19 12 0.26
22 21 0.46
23 5 0.11
ACGTcount: A:0.11, C:0.58, G:0.04, T:0.27
Consensus pattern (22 bp):
CCACCATCGTCCCTCTCCCTCT
Found at i:23817233 original size:92 final size:92
Alignment explanation
Indices: 23817076--23817257 Score: 294
Period size: 92 Copynumber: 2.0 Consensus size: 92
23817066 AACCTACTGT
* *
23817076 TGAGAGGGAAAACAATTATCAATTTTGGTTAATACAATTTCCTTCATTATTCTCTCCTCTTCTCA
1 TGAGAGGGAAAACAATTATCAATTTTGGTTAATACAACTTCCTTCATTATTCTCTCCTATTCTCA
* *
23817141 ATTCCTTTTATCTTTTCTCTTTGCTGC
66 ATTCCCTCTATCTTTTCTCTTTGCTGC
* *
23817168 TGAGAGGGGAAAA-AATTATCAATTTTGGTTAATACAACTTCCTTCTTTATTCTCTCTTATTCTC
1 TGAGA-GGGAAAACAATTATCAATTTTGGTTAATACAACTTCCTTCATTATTCTCTCCTATTCTC
23817232 AATTCCCTCTATCTTTTCTCTTTGCT
65 AATTCCCTCTATCTTTTCTCTTTGCT
23817258 TTCTAATCTT
Statistics
Matches: 83, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
92 76 0.92
93 7 0.08
ACGTcount: A:0.23, C:0.21, G:0.10, T:0.46
Consensus pattern (92 bp):
TGAGAGGGAAAACAATTATCAATTTTGGTTAATACAACTTCCTTCATTATTCTCTCCTATTCTCA
ATTCCCTCTATCTTTTCTCTTTGCTGC
Found at i:23817306 original size:29 final size:28
Alignment explanation
Indices: 23817264--23817320 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 28
23817254 TGCTTTCTAA
23817264 TCTTTTCTGGTTCAGGCCGTATCAAAGGT
1 TCTTTTCTGGTTCA-GCCGTATCAAAGGT
*
23817293 TCTTTTCTGGTTCAGCTGTATCAAAGGT
1 TCTTTTCTGGTTCAGCCGTATCAAAGGT
23817321 ATTAGAACCT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
28 13 0.48
29 14 0.52
ACGTcount: A:0.18, C:0.19, G:0.23, T:0.40
Consensus pattern (28 bp):
TCTTTTCTGGTTCAGCCGTATCAAAGGT
Found at i:23822446 original size:24 final size:24
Alignment explanation
Indices: 23822389--23822446 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 24
23822379 GAGTATTTTA
*
23822389 TTTATTTAATATTAATACAATTAT
1 TTTATTTAATATTAATACAATAAT
* *
23822413 TTTATGTAATATTAATATAA-AAT
1 TTTATTTAATATTAATACAATAAT
23822436 TTTCATTTAAT
1 TTT-ATTTAAT
23822447 TATATTTTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
23 5 0.17
24 24 0.83
ACGTcount: A:0.41, C:0.03, G:0.02, T:0.53
Consensus pattern (24 bp):
TTTATTTAATATTAATACAATAAT
Found at i:23822848 original size:34 final size:37
Alignment explanation
Indices: 23822802--23822882 Score: 98
Period size: 40 Copynumber: 2.2 Consensus size: 37
23822792 ATCAACAATT
23822802 AATTAATTTTTTAAAAT-AA-A-A-AAAAACTATAAAA
1 AATT-ATTTTTTAAAATAAACATATAAAAACTATAAAA
23822836 AATTATTCTTTTAAAATAAACATATTTAAAAACTATAAAA
1 AATTATT-TTTTAAAATAAACATA--TAAAAACTATAAAA
23822876 AATTATT
1 AATTATT
23822883 AAAAATATAT
Statistics
Matches: 40, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
33 3 0.08
34 13 0.32
35 2 0.05
36 1 0.03
37 1 0.03
40 20 0.50
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (37 bp):
AATTATTTTTTAAAATAAACATATAAAAACTATAAAA
Found at i:23823937 original size:21 final size:20
Alignment explanation
Indices: 23823913--23823952 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
23823903 ACTAATACTA
*
23823913 TATTAAAAATTTCATAAATAT
1 TATT-AAAATTTCAAAAATAT
*
23823934 TATTATAATTTCAAAAATA
1 TATTAAAATTTCAAAAATA
23823953 AAAGTAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (20 bp):
TATTAAAATTTCAAAAATAT
Found at i:23829988 original size:93 final size:93
Alignment explanation
Indices: 23829876--23830047 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
23829866 GCCCATAAGT
* *
23829876 GAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
23829941 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
* *
23829969 GAACTCGGACTCAACTCAACGAGTTCTGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
23830034 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
23830048 CAAATATCCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:23830040 original size:46 final size:46
Alignment explanation
Indices: 23829868--23830037 Score: 195
Period size: 46 Copynumber: 3.7 Consensus size: 46
23829858 TGTAACCCGC
* * *
23829868 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCTGACATTCGCAT
* *
23829914 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC---TGAC-A-TTCGCAT
* * *
23829964 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCTGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCTGACATTCGCAT
23830007 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
23830038 TTCGGATGCC
Statistics
Matches: 104, Mismatches: 11, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 4 0.04
45 2 0.02
46 57 0.55
47 25 0.24
48 2 0.02
49 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCTGACATTCGCAT
Found at i:23832064 original size:21 final size:21
Alignment explanation
Indices: 23832040--23832095 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
23832030 CTGCACAAGC
23832040 GGCGTGTGACCCCTCCACACG
1 GGCGTGTGACCCCTCCACACG
*** * *
23832061 GGCGTGTGTGGCCTTCACATG
1 GGCGTGTGACCCCTCCACACG
23832082 GGCGTGTAGACCCC
1 GGCGTGT-GACCCC
23832096 CACATGGACT
Statistics
Matches: 26, Mismatches: 8, Indels: 1
0.74 0.23 0.03
Matches are distributed among these distances:
21 23 0.88
22 3 0.12
ACGTcount: A:0.12, C:0.34, G:0.34, T:0.20
Consensus pattern (21 bp):
GGCGTGTGACCCCTCCACACG
Found at i:23839112 original size:16 final size:16
Alignment explanation
Indices: 23839093--23839177 Score: 56
Period size: 13 Copynumber: 5.5 Consensus size: 16
23839083 TAATTAATTA
23839093 TTTATTTTTATTTTCT
1 TTTATTTTTATTTTCT
*
23839109 TTTA--TTTA-CTTCT
1 TTTATTTTTATTTTCT
*
23839122 TTTATTATTATTATTCT
1 TTTATTTTTATT-TTCT
* *
23839139 CTTAGCTTATTA-TTTC-
1 TTTA--TTTTTATTTTCT
*
23839155 -TTATTTTTATTTTAT
1 TTTATTTTTATTTTCT
23839170 TTTATTTT
1 TTTATTTT
23839178 AGTATCATTA
Statistics
Matches: 54, Mismatches: 6, Indels: 18
0.69 0.08 0.23
Matches are distributed among these distances:
13 13 0.24
14 7 0.13
15 6 0.11
16 11 0.20
17 10 0.19
18 1 0.02
19 6 0.11
ACGTcount: A:0.18, C:0.08, G:0.01, T:0.73
Consensus pattern (16 bp):
TTTATTTTTATTTTCT
Found at i:23842350 original size:54 final size:48
Alignment explanation
Indices: 23842265--23842398 Score: 225
Period size: 48 Copynumber: 2.8 Consensus size: 48
23842255 GTTCTGTAAG
* *
23842265 ATTGG-TTTTGGGTACAGCTTTTTCTTCTTCTTCTTCTTTTCCCTGAA
1 ATTGGTTTTTGGGTACGGCTTTTTCTTCTTCTTCTTCTTTTCCCTAAA
23842312 ATTGGTTTTTGGGTACGGCTTTTTCTTCTTCTTCTTCTTTTCCCTAAA
1 ATTGGTTTTTGGGTACGGCTTTTTCTTCTTCTTCTTCTTTTCCCTAAA
* *
23842360 ATTGGTTTTTGGGTATGGTTTTTTCTTCTTCTTCTTCTT
1 ATTGGTTTTTGGGTACGGCTTTTTCTTCTTCTTCTTCTT
23842399 CTTCTTTTCC
Statistics
Matches: 82, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
47 5 0.06
48 77 0.94
ACGTcount: A:0.09, C:0.19, G:0.16, T:0.57
Consensus pattern (48 bp):
ATTGGTTTTTGGGTACGGCTTTTTCTTCTTCTTCTTCTTTTCCCTAAA
Found at i:23843139 original size:18 final size:18
Alignment explanation
Indices: 23843094--23843157 Score: 78
Period size: 18 Copynumber: 3.6 Consensus size: 18
23843084 ATGAAATAAG
23843094 TTATATGTTGTTGTTC-T
1 TTATATGTTGTTGTTCAT
*
23843111 TTAGGGA-GTTGTTGTTCAT
1 TTA--TATGTTGTTGTTCAT
23843130 TTATATGTTGTTGTTCAT
1 TTATATGTTGTTGTTCAT
*
23843148 TTATAAGTTG
1 TTATATGTTG
23843158 AAGTTTCAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
17 4 0.10
18 31 0.77
19 5 0.12
ACGTcount: A:0.17, C:0.05, G:0.22, T:0.56
Consensus pattern (18 bp):
TTATATGTTGTTGTTCAT
Found at i:23845198 original size:14 final size:14
Alignment explanation
Indices: 23845147--23845191 Score: 72
Period size: 14 Copynumber: 3.2 Consensus size: 14
23845137 CCAGAAAAGT
*
23845147 AAATCATTTTTCAG
1 AAATCATTTTCCAG
23845161 AAATCATTTTCCAG
1 AAATCATTTTCCAG
*
23845175 AAATCATTTTCCGG
1 AAATCATTTTCCAG
23845189 AAA
1 AAA
23845192 ATATTTTACC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.38, C:0.18, G:0.09, T:0.36
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:23845431 original size:47 final size:47
Alignment explanation
Indices: 23845305--23845440 Score: 118
Period size: 47 Copynumber: 2.9 Consensus size: 47
23845295 GTGTATACAT
* * *
23845305 AATA-ATACTAAAATATATACATAAT-ATATATAAATGAACATATAC
1 AATATATATTAAAATAAATACATAATAATATATAAATAAACATATAC
* * * * *
23845350 AATATCTATTATAAATATTAATAACATAAAAATATATTAATAAATATGTAC
1 AATATATATTA-AAATA--AAT-ACATAATAATATATAAATAAACATATAC
23845401 -ATATATATTGAAAATAAATACATAATAATAT-TAAAATAAA
1 AATATATATT-AAAATAAATACATAATAATATAT-AAATAAA
23845441 ATAATAAGTG
Statistics
Matches: 72, Mismatches: 11, Indels: 14
0.74 0.11 0.14
Matches are distributed among these distances:
45 4 0.06
46 5 0.07
47 22 0.31
48 3 0.04
49 2 0.03
50 19 0.26
51 17 0.24
ACGTcount: A:0.58, C:0.06, G:0.02, T:0.34
Consensus pattern (47 bp):
AATATATATTAAAATAAATACATAATAATATATAAATAAACATATAC
Found at i:23845443 original size:23 final size:22
Alignment explanation
Indices: 23845380--23845440 Score: 63
Period size: 22 Copynumber: 2.8 Consensus size: 22
23845370 ATAACATAAA
* **
23845380 AATATATTAATAAATATGTACAT
1 AATATATTGA-AAATAAATACAT
23845403 -ATATATTGAAAATAAATACAT
1 AATATATTGAAAATAAATACAT
23845424 AATAATATT-AAAATAAA
1 AAT-ATATTGAAAATAAA
23845441 ATAATAAGTG
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
21 10 0.30
22 18 0.55
23 5 0.15
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.34
Consensus pattern (22 bp):
AATATATTGAAAATAAATACAT
Found at i:23845447 original size:22 final size:23
Alignment explanation
Indices: 23845398--23845440 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
23845388 AATAAATATG
23845398 TACAT-AT-ATATTGAAAATAAA
1 TACATAATAATATTGAAAATAAA
23845419 TACATAATAATATT-AAAATAAA
1 TACATAATAATATTGAAAATAAA
23845441 ATAATAAGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 5 0.25
22 10 0.50
23 5 0.25
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.33
Consensus pattern (23 bp):
TACATAATAATATTGAAAATAAA
Found at i:23845676 original size:24 final size:23
Alignment explanation
Indices: 23845649--23845751 Score: 63
Period size: 22 Copynumber: 4.4 Consensus size: 23
23845639 AGTGTTTAAG
23845649 AATATATACATAAGATGATATAAA
1 AATATATACAT-AGATGATATAAA
* *
23845673 AATATGTACATGGAATAGTATATAAA
1 AATATATACATAG-AT-G-ATATAAA
* *
23845699 AA-ATATA-ACTA-ATAATATTGAA
1 AATATATACA-TAGATGATA-TAAA
23845721 AATATATACATA-AT-ATATATAA
1 AATATATACATAGATGATATA-AA
*
23845743 AACATATAC
1 AATATATAC
23845752 GATATATATA
Statistics
Matches: 63, Mismatches: 8, Indels: 18
0.71 0.09 0.20
Matches are distributed among these distances:
21 4 0.06
22 18 0.29
23 12 0.19
24 14 0.22
25 6 0.10
26 9 0.14
ACGTcount: A:0.56, C:0.06, G:0.07, T:0.31
Consensus pattern (23 bp):
AATATATACATAGATGATATAAA
Found at i:23845738 original size:22 final size:22
Alignment explanation
Indices: 23845649--23845763 Score: 92
Period size: 23 Copynumber: 5.0 Consensus size: 22
23845639 AGTGTTTAAG
*
23845649 AATATATACATAAGATGATATAAA
1 AATATATACATAATAT-ATAT-AA
*
23845673 AATATGTACATGGAATAGTATATAA
1 AATATATACAT--AATA-TATATAA
*
23845698 AAAATATA-ACTAATA-ATATTGAA
1 AATATATACA-TAATATATA-T-AA
23845721 AATATATACATAATATATATAA
1 AATATATACATAATATATATAA
*
23845743 AACATATACGAT-ATATATATA
1 AATATATAC-ATAATATATATA
23845764 CATTAGAAAT
Statistics
Matches: 76, Mismatches: 6, Indels: 20
0.75 0.06 0.20
Matches are distributed among these distances:
21 3 0.04
22 20 0.26
23 21 0.28
24 15 0.20
25 9 0.12
26 7 0.09
27 1 0.01
ACGTcount: A:0.56, C:0.05, G:0.07, T:0.32
Consensus pattern (22 bp):
AATATATACATAATATATATAA
Found at i:23845869 original size:23 final size:22
Alignment explanation
Indices: 23845834--23845876 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
23845824 TATATATAAA
*
23845834 TAATAATGATATTAGAAATACT
1 TAATAATAATATTAGAAATACT
23845856 TAATATATAATATTAGAAATA
1 TAATA-ATAATATTAGAAATA
23845877 TATACATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.53, C:0.02, G:0.07, T:0.37
Consensus pattern (22 bp):
TAATAATAATATTAGAAATACT
Found at i:23845879 original size:18 final size:18
Alignment explanation
Indices: 23845858--23845904 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 18
23845848 GAAATACTTA
*
23845858 ATATATAATATTAGAAATAT
1 ATATATAATA-TA-AAAAAT
*
23845878 ATACATAATATAAAAAAT
1 ATATATAATATAAAAAAT
23845896 ATATATAAT
1 ATATATAAT
23845905 GTAGTATTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 13 0.54
19 2 0.08
20 9 0.38
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (18 bp):
ATATATAATATAAAAAAT
Found at i:23845887 original size:20 final size:20
Alignment explanation
Indices: 23845842--23845930 Score: 72
Period size: 20 Copynumber: 4.2 Consensus size: 20
23845832 AATAATAATG
*
23845842 ATATTAGAAATACTTAATATATA
1 ATATTAGAAATA--T-ATACATA
23845865 ATATTAGAAATATATACATA
1 ATATTAGAAATATATACATA
* * *
23845885 ATATAAAAAATATATATAATGTA
1 ATATTAGAAATATATA-CA--TA
*
23845908 GTATTA-AAATATATACATA
1 ATATTAGAAATATATACATA
23845927 ATAT
1 ATAT
23845931 ATACATATTA
Statistics
Matches: 55, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
19 5 0.09
20 20 0.36
21 3 0.05
22 9 0.16
23 18 0.33
ACGTcount: A:0.55, C:0.03, G:0.04, T:0.37
Consensus pattern (20 bp):
ATATTAGAAATATATACATA
Found at i:23845961 original size:18 final size:20
Alignment explanation
Indices: 23845924--23845962 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 20
23845914 AAATATATAC
23845924 ATAATATATACATATTAAAA
1 ATAATATATACATATTAAAA
*
23845944 ATAATA-ATA-ATGTTAAAA
1 ATAATATATACATATTAAAA
23845962 A
1 A
23845963 AATTATTGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 9 0.50
19 3 0.17
20 6 0.33
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.33
Consensus pattern (20 bp):
ATAATATATACATATTAAAA
Found at i:23846856 original size:12 final size:12
Alignment explanation
Indices: 23846834--23846871 Score: 51
Period size: 12 Copynumber: 3.1 Consensus size: 12
23846824 AAAAAAATTC
23846834 TCTCTTTTTTATT
1 TCTC-TTTTTATT
23846847 AT-TCTTTTTATT
1 -TCTCTTTTTATT
23846859 TCTCTTTTTATT
1 TCTCTTTTTATT
23846871 T
1 T
23846872 ATCTATACAC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 1 0.04
12 19 0.83
13 2 0.09
14 1 0.04
ACGTcount: A:0.11, C:0.13, G:0.00, T:0.76
Consensus pattern (12 bp):
TCTCTTTTTATT
Found at i:23847561 original size:98 final size:98
Alignment explanation
Indices: 23847392--23847594 Score: 397
Period size: 98 Copynumber: 2.1 Consensus size: 98
23847382 GGGCTGGGCA
23847392 AATTTTGGGCTTCTACAACTGCCCCTCTTTGCTTATTGTCGTGCAACGAGAATAGAGCAAAGACT
1 AATTTTGGGCTTCTACAACTGCCCCTCTTTGCTTATTGTCGTGCAACGAGAATAGAGCAAAGACT
23847457 TTCAAGGAAGACCAAATTTGTCCAGTTTTGCCG
66 TTCAAGGAAGACCAAATTTGTCCAGTTTTGCCG
23847490 AATTTTGGGCTTCTACAACTGCCCCTCTTTGCTTATTGTCGTGCAACGAGAATAGAGCAAAGACT
1 AATTTTGGGCTTCTACAACTGCCCCTCTTTGCTTATTGTCGTGCAACGAGAATAGAGCAAAGACT
23847555 TTCAAGGAAGACCAAATTTGTCCAGTTTTGCCG
66 TTCAAGGAAGACCAAATTTGTCCAGTTTTGCCG
*
23847588 AGTTTTG
1 AATTTTG
23847595 ACTTGCTTTG
Statistics
Matches: 104, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
98 104 1.00
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.32
Consensus pattern (98 bp):
AATTTTGGGCTTCTACAACTGCCCCTCTTTGCTTATTGTCGTGCAACGAGAATAGAGCAAAGACT
TTCAAGGAAGACCAAATTTGTCCAGTTTTGCCG
Found at i:23848136 original size:87 final size:90
Alignment explanation
Indices: 23848008--23848363 Score: 367
Period size: 87 Copynumber: 4.0 Consensus size: 90
23847998 AACAGACATT
* * * * *
23848008 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCACAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
* **
23848073 TT-AGTTTTT-AAAACT-TAGTTTG-
66 TTGA-TTTTTGAAAAATATAAATTGA
* ** * *
23848095 AAAAGCAGATTTTGAAAATACCTC-GACATGTGACCCGAGGCTCAAATCAGCTCTCGCAATATGA
1 AAAAACAGAAATTGAAAATACCTCAG-CATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
23848159 GTTGATTTTTGAAAAATATAAATTGA
65 GTTGATTTTTGAAAAATATAAATTGA
* * *
23848185 AAAAACAGAAATTGAAAATACCTTAGCATGT--TCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
** *
23848248 TTGATTTTTTTGAAAAGCAGAAATTGA
66 TTGA--TTTTTGAAAAATATAAATTGA
*
23848275 AAATTA-A-AAATTGAAAATACCTCAGC--GTG-CCCTGAGGCTCAACTCACCTCTCGCAATATG
1 AAA-AACAGAAATTGAAAATACCTCAGCATGTGACCC-GAGGCTCAACTCACCTCTCGCAATATG
* * *
23848335 AGTTGATTTTTGACAAACAGAAATTGA
64 AGTTGATTTTTGAAAAATATAAATTGA
23848362 AA
1 AA
23848364 TTACCTCAGC
Statistics
Matches: 228, Mismatches: 30, Indels: 22
0.81 0.11 0.08
Matches are distributed among these distances:
86 1 0.00
87 83 0.36
88 39 0.17
89 56 0.25
90 47 0.21
91 2 0.01
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.27
Consensus pattern (90 bp):
AAAAACAGAAATTGAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTGAAAAATATAAATTGA
Found at i:23848404 original size:73 final size:72
Alignment explanation
Indices: 23848282--23848504 Score: 313
Period size: 75 Copynumber: 3.1 Consensus size: 72
23848272 TGAAAATTAA
*
23848282 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
23848347 ACAAACAG
66 A-AAACAG
* * * *
23848355 AAATTGAAATTACCTCAGCGTGTCCTGAAGCTCAACTCACTTCTTGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTT
**
23848420 TGAAAGGTAG
64 TGAAA-ACAG
* * *
23848430 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
23848495 -AAACAG
66 AAAACAG
23848501 AAAT
1 AAAT
23848505 AAAAAACATT
Statistics
Matches: 131, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
71 6 0.05
72 2 0.02
73 60 0.46
74 2 0.02
75 61 0.47
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (72 bp):
AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
AAAACAG
Found at i:23854914 original size:46 final size:45
Alignment explanation
Indices: 23854816--23854906 Score: 139
Period size: 46 Copynumber: 2.0 Consensus size: 45
23854806 AACCCGCCCC
* *
23854816 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-ATGCGCAACCA
*
23854862 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGCTCAACCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACCA
23854906 T
1 T
23854907 CCTAGTGACA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
44 9 0.21
46 33 0.79
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACCA
Found at i:23855351 original size:30 final size:30
Alignment explanation
Indices: 23855317--23855377 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
23855307 CATTTAATAC
23855317 AAACTTTGGAAAAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
* * *
23855347 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
23855377 A
1 A
23855378 GGCTCGGGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.31, C:0.25, G:0.08, T:0.36
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACACTTTTGCCCCT
Found at i:23863411 original size:23 final size:22
Alignment explanation
Indices: 23863348--23863408 Score: 63
Period size: 22 Copynumber: 2.8 Consensus size: 22
23863338 ATAACATAAA
* **
23863348 AATATATTAATAAATATGTACAT
1 AATATATTGA-AAATAAATACAT
23863371 -ATATATTGAAAATAAATACAT
1 AATATATTGAAAATAAATACAT
23863392 AATAATATT-AAAATAAA
1 AAT-ATATTGAAAATAAA
23863409 ATAATAAGTG
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
21 10 0.30
22 18 0.55
23 5 0.15
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.34
Consensus pattern (22 bp):
AATATATTGAAAATAAATACAT
Found at i:23863415 original size:22 final size:23
Alignment explanation
Indices: 23863366--23863408 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
23863356 AATAAATATG
23863366 TACAT-AT-ATATTGAAAATAAA
1 TACATAATAATATTGAAAATAAA
23863387 TACATAATAATATT-AAAATAAA
1 TACATAATAATATTGAAAATAAA
23863409 ATAATAAGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 5 0.25
22 10 0.50
23 5 0.25
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.33
Consensus pattern (23 bp):
TACATAATAATATTGAAAATAAA
Found at i:23863600 original size:29 final size:28
Alignment explanation
Indices: 23863566--23863621 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 28
23863556 GAAATAATAA
23863566 TATATACACAATA-TGGTATTAAAAATATG
1 TATATACACAATAGT-GT-TTAAAAATATG
* *
23863595 TATATATATAATAGTGTTTAAAAATAT
1 TATATACACAATAGTGTTTAAAAATAT
23863622 ATACATAAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 10 0.42
29 13 0.54
30 1 0.04
ACGTcount: A:0.48, C:0.04, G:0.09, T:0.39
Consensus pattern (28 bp):
TATATACACAATAGTGTTTAAAAATATG
Found at i:23863640 original size:24 final size:23
Alignment explanation
Indices: 23863598--23863718 Score: 78
Period size: 22 Copynumber: 5.3 Consensus size: 23
23863588 AAATATGTAT
*
23863598 ATATATA-ATAG-TG-TTTAAAA
1 ATATATACATAGATGATATAAAA
23863618 ATATATACATAAGATGATATAAAA
1 ATATATACAT-AGATGATATAAAA
* *
23863642 ATATGTACATGGAATAGTATATAAAA
1 ATATATACATAG-AT-G-ATATAAAA
* *
23863668 ATATA-AC-TA-ATAATATTGAAA
1 ATATATACATAGATGATA-TAAAA
23863689 ATATATACATA-AT-ATATATAAA
1 ATATATACATAGATGATATA-AAA
*
23863711 ACATATAC
1 ATATATAC
23863719 GATATATATA
Statistics
Matches: 81, Mismatches: 9, Indels: 20
0.74 0.08 0.18
Matches are distributed among these distances:
20 10 0.12
21 12 0.15
22 19 0.23
23 7 0.09
24 18 0.22
25 3 0.04
26 12 0.15
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.33
Consensus pattern (23 bp):
ATATATACATAGATGATATAAAA
Found at i:23863679 original size:22 final size:23
Alignment explanation
Indices: 23863595--23863732 Score: 113
Period size: 24 Copynumber: 5.8 Consensus size: 23
23863585 TAAAAATATG
* * *
23863595 TATATATATAATAGTGTTTAAAAA
1 TATATACATAATA-TATATAAAAA
*
23863619 TATATACATAAGATGATATAAAAA
1 TATATACATAATAT-ATATAAAAA
*
23863643 TATGTACATGGAATAGTATATAAAAA
1 TATATACAT--AATA-TATATAAAAA
*
23863669 TATA-AC-TAATA-ATATTGAAAA
1 TATATACATAATATATA-TAAAAA
23863690 TATATACATAATATATAT-AAAA
1 TATATACATAATATATATAAAAA
*
23863712 CATATACGATATATATATATA
1 TATATAC-ATA-ATATATATA
23863733 TACACATTAG
Statistics
Matches: 94, Mismatches: 9, Indels: 21
0.76 0.07 0.17
Matches are distributed among these distances:
20 3 0.03
21 9 0.10
22 16 0.17
23 10 0.11
24 38 0.40
25 2 0.02
26 15 0.16
27 1 0.01
ACGTcount: A:0.54, C:0.04, G:0.07, T:0.35
Consensus pattern (23 bp):
TATATACATAATATATATAAAAA
Found at i:23863727 original size:24 final size:22
Alignment explanation
Indices: 23863615--23863732 Score: 82
Period size: 22 Copynumber: 5.0 Consensus size: 22
23863605 ATAGTGTTTA
* *
23863615 AAAATATATACATAAGATGATAT
1 AAAACATATACATAATAT-ATAT
23863638 AAAA-ATATGTACATGGAATAGTATAT
1 AAAACATA--TACAT--AATA-TATAT
23863664 AAAA-ATATA-ACTAATA-ATATT
1 AAAACATATACA-TAATATATA-T
*
23863685 GAAAATATATACATAATATATAT
1 -AAAACATATACATAATATATAT
23863708 AAAACATATACGATATATATATAT
1 AAAACATATAC-ATA-ATATATAT
23863732 A
1 A
23863733 TACACATTAG
Statistics
Matches: 80, Mismatches: 2, Indels: 25
0.75 0.02 0.23
Matches are distributed among these distances:
20 3 0.04
21 1 0.01
22 21 0.26
23 19 0.24
24 21 0.26
26 14 0.17
27 1 0.01
ACGTcount: A:0.56, C:0.05, G:0.07, T:0.32
Consensus pattern (22 bp):
AAAACATATACATAATATATAT
Found at i:23863844 original size:23 final size:23
Alignment explanation
Indices: 23863808--23863868 Score: 72
Period size: 23 Copynumber: 2.6 Consensus size: 23
23863798 ATATATATAA
*
23863808 ATAATA-ATGATATTAGAAATACT
1 ATAATATATAATATTAGAAATA-T
23863831 -TAATATATAATATTAGAAATAT
1 ATAATATATAATATTAGAAATAT
23863853 ATACATAATATAATAT
1 ATA-AT-ATATAATAT
23863869 ATATAATGTA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
22 6 0.18
23 16 0.48
24 2 0.06
25 9 0.27
ACGTcount: A:0.54, C:0.03, G:0.05, T:0.38
Consensus pattern (23 bp):
ATAATATATAATATTAGAAATAT
Found at i:23863851 original size:16 final size:16
Alignment explanation
Indices: 23863832--23863875 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
23863822 AGAAATACTT
*
23863832 AATATATAATATTAGA
1 AATATATAATAATAGA
*
23863848 AATATATACATAATATA
1 AATATATA-ATAATAGA
23863865 ATATATATAAT
1 A-ATATATAAT
23863876 GTAGTATTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 8 0.33
17 9 0.38
18 7 0.29
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (16 bp):
AATATATAATAATAGA
Found at i:23863862 original size:20 final size:19
Alignment explanation
Indices: 23863837--23863901 Score: 71
Period size: 20 Copynumber: 3.4 Consensus size: 19
23863827 TACTTAATAT
23863837 ATAATATTAGAAATATATAC
1 ATAATATTA-AAATATATAC
*
23863857 ATAATA-TAATATATATA-
1 ATAATATTAAAATATATAC
*
23863874 ATGTAGTATTAAAATATATAC
1 A--TAATATTAAAATATATAC
23863895 ATAATAT
1 ATAATAT
23863902 ATACATATTA
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
17 1 0.03
18 8 0.22
19 11 0.30
20 16 0.43
21 1 0.03
ACGTcount: A:0.54, C:0.03, G:0.05, T:0.38
Consensus pattern (19 bp):
ATAATATTAAAATATATAC
Found at i:23863863 original size:9 final size:9
Alignment explanation
Indices: 23863833--23863909 Score: 52
Period size: 9 Copynumber: 8.2 Consensus size: 9
23863823 GAAATACTTA
23863833 ATATATAAT
1 ATATATAAT
*
23863842 AT-TAGAA-
1 ATATATAAT
23863849 ATATATACAT
1 ATATATA-AT
23863859 A-ATATAAT
1 ATATATAAT
23863867 ATATATAAT
1 ATATATAAT
* *
23863876 GTAGTATTAAA
1 ATA-TA-TAAT
23863887 ATATATACAT
1 ATATATA-AT
23863897 AATATATACAT
1 -ATATATA-AT
23863908 AT
1 AT
23863910 TAAAAATAAT
Statistics
Matches: 54, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
7 2 0.04
8 10 0.19
9 19 0.35
10 8 0.15
11 15 0.28
ACGTcount: A:0.53, C:0.04, G:0.04, T:0.39
Consensus pattern (9 bp):
ATATATAAT
Found at i:23863932 original size:18 final size:20
Alignment explanation
Indices: 23863895--23863933 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 20
23863885 AAATATATAC
23863895 ATAATATATACATATTAAAA
1 ATAATATATACATATTAAAA
*
23863915 ATAATA-ATA-ATGTTAAAA
1 ATAATATATACATATTAAAA
23863933 A
1 A
23863934 AACTGTTGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 9 0.50
19 3 0.17
20 6 0.33
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.33
Consensus pattern (20 bp):
ATAATATATACATATTAAAA
Found at i:23863999 original size:17 final size:16
Alignment explanation
Indices: 23863954--23864001 Score: 62
Period size: 15 Copynumber: 3.0 Consensus size: 16
23863944 AATACTTCAT
*
23863954 AAATATATATATACTA
1 AAATATATATATAATA
*
23863970 AAA-ATATACATAATA
1 AAATATATATATAATA
23863985 ATAATATATATATAATA
1 A-AATATATATATAATA
23864002 GTAAGTCGTG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
15 11 0.41
16 5 0.19
17 11 0.41
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.35
Consensus pattern (16 bp):
AAATATATATATAATA
Found at i:23864820 original size:12 final size:12
Alignment explanation
Indices: 23864798--23864835 Score: 51
Period size: 12 Copynumber: 3.1 Consensus size: 12
23864788 AAAAAAATTC
23864798 TCTCTTTTTTATT
1 TCTC-TTTTTATT
23864811 AT-TCTTTTTATT
1 -TCTCTTTTTATT
23864823 TCTCTTTTTATT
1 TCTCTTTTTATT
23864835 T
1 T
23864836 ATCTATACAC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 1 0.04
12 19 0.83
13 2 0.09
14 1 0.04
ACGTcount: A:0.11, C:0.13, G:0.00, T:0.76
Consensus pattern (12 bp):
TCTCTTTTTATT
Found at i:23869423 original size:12 final size:12
Alignment explanation
Indices: 23869396--23869425 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
23869386 AAAACCCTAA
23869396 ATTTTTCTTTCC
1 ATTTTTCTTTCC
23869408 -TTTTTCTTTCC
1 ATTTTTCTTTCC
23869419 ATTTTTC
1 ATTTTTC
23869426 CTCTTTCTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.07, C:0.23, G:0.00, T:0.70
Consensus pattern (12 bp):
ATTTTTCTTTCC
Found at i:23869561 original size:16 final size:17
Alignment explanation
Indices: 23869505--23869564 Score: 63
Period size: 16 Copynumber: 3.6 Consensus size: 17
23869495 TTTATTCATT
*
23869505 CTTTATTATAATTATATA
1 CTTTA-TATAATTATTTA
* *
23869523 ATTTA-AT-ATAATTTA
1 CTTTATATAATTATTTA
23869538 CTTTATATAATTATTTA
1 CTTTATATAATTATTTA
23869555 C-TTATATAAT
1 CTTTATATAAT
23869565 AAGTAAATTC
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
15 10 0.29
16 13 0.37
17 8 0.23
18 4 0.11
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (17 bp):
CTTTATATAATTATTTA
Found at i:23869562 original size:30 final size:33
Alignment explanation
Indices: 23869505--23869564 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 33
23869495 TTTATTCATT
*
23869505 CTTTATTATAATTATATAATTTAATATAATTTA
1 CTTTATTATAATTATATAACTTAATATAATTTA
*
23869538 CTTTA-TATAATTAT-TTACTT-ATATAAT
1 CTTTATTATAATTATATAACTTAATATAAT
23869565 AAGTAAATTC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 7 0.28
31 4 0.16
32 9 0.36
33 5 0.20
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (33 bp):
CTTTATTATAATTATATAACTTAATATAATTTA
Found at i:23876263 original size:18 final size:18
Alignment explanation
Indices: 23876229--23876273 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
23876219 ATATGTACTC
23876229 TTTTTCTTTCACTAGGAAT
1 TTTTTCTTTCACTAGG-AT
*
23876248 TTTTTTTTTCAC-AGGAT
1 TTTTTCTTTCACTAGGAT
23876265 TTTTATCTT
1 TTTT-TCTT
23876274 AGTAAGGTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 6 0.26
18 6 0.26
19 11 0.48
ACGTcount: A:0.18, C:0.13, G:0.09, T:0.60
Consensus pattern (18 bp):
TTTTTCTTTCACTAGGAT
Found at i:23879379 original size:34 final size:32
Alignment explanation
Indices: 23879340--23879402 Score: 81
Period size: 33 Copynumber: 1.9 Consensus size: 32
23879330 CAATATATAT
*
23879340 TTAAAAATCATTTTTATTTAATTTTATTTATTTC
1 TTAAAAATCA-TTTTATTTAA-ATTATTTATTTC
* *
23879374 TTAAAACTTATTTTATTTAAATTATTTAT
1 TTAAAAATCATTTTATTTAAATTATTTAT
23879403 ATTTTTTACA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
32 8 0.31
33 10 0.38
34 8 0.31
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (32 bp):
TTAAAAATCATTTTATTTAAATTATTTATTTC
Found at i:23884813 original size:1 final size:1
Alignment explanation
Indices: 23884807--23884851 Score: 90
Period size: 1 Copynumber: 45.0 Consensus size: 1
23884797 ATTTAAATTG
23884807 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
23884852 AATGTTTTCT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 44 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:23897802 original size:24 final size:24
Alignment explanation
Indices: 23897775--23897883 Score: 116
Period size: 24 Copynumber: 4.5 Consensus size: 24
23897765 TCTATATAAC
*
23897775 AATCGCACACTAGCTACATAATCA
1 AATCGCACACTAGCTACATAGTCA
*
23897799 AATCGCACACTAGTGTACATAGTC-
1 AATCGCACACTAG-CTACATAGTCA
*
23897823 AA-C-CGCACTAGCTACATAGTCA
1 AATCGCACACTAGCTACATAGTCA
23897845 AACTCGCACACTTAGTGCTACATAGTCA
1 AA-TCGCACAC-TA--GCTACATAGTCA
*
23897873 ATTCGCACACT
1 AATCGCACACT
23897884 TAGTGCTGCA
Statistics
Matches: 71, Mismatches: 6, Indels: 14
0.78 0.07 0.15
Matches are distributed among these distances:
21 9 0.13
22 9 0.13
23 1 0.01
24 16 0.23
25 12 0.17
26 3 0.04
27 8 0.11
28 13 0.18
ACGTcount: A:0.35, C:0.29, G:0.13, T:0.23
Consensus pattern (24 bp):
AATCGCACACTAGCTACATAGTCA
Found at i:23897840 original size:46 final size:49
Alignment explanation
Indices: 23897782--23897873 Score: 154
Period size: 46 Copynumber: 1.9 Consensus size: 49
23897772 AACAATCGCA
23897782 CACTAGCTACATAATCAAA-TCGCACAC-TAGTG-TACATAGTCAACCG
1 CACTAGCTACATAATCAAACTCGCACACTTAGTGCTACATAGTCAACCG
*
23897828 CACTAGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAA
1 CACTAGCTACATAATCAAACTCGCACACTTAGTGCTACATAGTCAA
23897874 TTCGCACACT
Statistics
Matches: 42, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
46 18 0.43
47 8 0.19
48 5 0.12
49 11 0.26
ACGTcount: A:0.36, C:0.28, G:0.13, T:0.23
Consensus pattern (49 bp):
CACTAGCTACATAATCAAACTCGCACACTTAGTGCTACATAGTCAACCG
Found at i:23897865 original size:28 final size:27
Alignment explanation
Indices: 23897787--23897890 Score: 116
Period size: 27 Copynumber: 4.1 Consensus size: 27
23897777 TCGCACACTA
* *
23897787 GCTACATAATCAAATCGCACAC-TAGT
1 GCTACATAGTCAACTCGCACACTTAGT
23897813 G-TACATAGTCAAC-CG--CAC-TA--
1 GCTACATAGTCAACTCGCACACTTAGT
23897833 GCTACATAGTCAAACTCGCACACTTAGT
1 GCTACATAGTC-AACTCGCACACTTAGT
*
23897861 GCTACATAGTCAATTCGCACACTTAGT
1 GCTACATAGTCAACTCGCACACTTAGT
23897888 GCT
1 GCT
23897891 GCACATTTAA
Statistics
Matches: 67, Mismatches: 3, Indels: 15
0.79 0.04 0.18
Matches are distributed among these distances:
20 1 0.01
21 9 0.13
22 8 0.12
23 2 0.03
24 2 0.03
25 13 0.19
26 3 0.04
27 18 0.27
28 11 0.16
ACGTcount: A:0.33, C:0.28, G:0.14, T:0.25
Consensus pattern (27 bp):
GCTACATAGTCAACTCGCACACTTAGT
Found at i:23897886 original size:27 final size:25
Alignment explanation
Indices: 23897774--23897890 Score: 113
Period size: 27 Copynumber: 4.7 Consensus size: 25
23897764 GTCTATATAA
*
23897774 CAATCGCACACTA--GCTACATAAT
1 CAATCGCACACTAGTGCTACATAGT
23897797 CAAATCGCACACTAGTG-TACATAGT
1 C-AATCGCACACTAGTGCTACATAGT
*
23897822 CAA-C-CGCACTA--GCTACATAGT
1 CAATCGCACACTAGTGCTACATAGT
23897843 CAAACTCGCACACTTAGTGCTACATAGT
1 C-AA-TCGCACAC-TAGTGCTACATAGT
23897871 CAATTCGCACACTTAGTGCT
1 CAA-TCGCACAC-TAGTGCT
23897891 GCACATTTAA
Statistics
Matches: 79, Mismatches: 4, Indels: 18
0.78 0.04 0.18
Matches are distributed among these distances:
20 1 0.01
21 9 0.11
22 8 0.10
23 2 0.03
24 15 0.19
25 12 0.15
26 3 0.04
27 18 0.23
28 11 0.14
ACGTcount: A:0.33, C:0.29, G:0.14, T:0.24
Consensus pattern (25 bp):
CAATCGCACACTAGTGCTACATAGT
Found at i:23906032 original size:5 final size:5
Alignment explanation
Indices: 23906022--23906058 Score: 65
Period size: 5 Copynumber: 7.4 Consensus size: 5
23906012 ATCCTCTATC
*
23906022 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA ATTTA TT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TT
23906059 ATTTTTTTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTTA
Found at i:23908099 original size:28 final size:28
Alignment explanation
Indices: 23908048--23908194 Score: 174
Period size: 28 Copynumber: 5.3 Consensus size: 28
23908038 CTTTAGAGTA
*
23908048 CGCCACAATGGCTTTCC--TTTCATAGAT
1 CGCCACAAAGGC-TTCCTTTTTCATAGAT
* * *
23908075 CGCTATAAAGGCTTCCTTTTTCATAAAT
1 CGCCACAAAGGCTTCCTTTTTCATAGAT
* *
23908103 CACCACGAAGGCTT-CTTTTTCATAGAT
1 CGCCACAAAGGCTTCCTTTTTCATAGAT
* * *
23908130 TGCCACAAAGGCTTCTTTTTTCATAAAT
1 CGCCACAAAGGCTTCCTTTTTCATAGAT
23908158 CGCCACAAAGGCTTCCTTTTTCATAGAT
1 CGCCACAAAGGCTTCCTTTTTCATAGAT
*
23908186 TGCCACAAA
1 CGCCACAAA
23908195 TACTTTTTTT
Statistics
Matches: 99, Mismatches: 18, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
26 4 0.04
27 32 0.32
28 63 0.64
ACGTcount: A:0.27, C:0.26, G:0.13, T:0.34
Consensus pattern (28 bp):
CGCCACAAAGGCTTCCTTTTTCATAGAT
Found at i:23908125 original size:55 final size:56
Alignment explanation
Indices: 23908065--23908194 Score: 190
Period size: 55 Copynumber: 2.3 Consensus size: 56
23908055 ATGGCTTTCC
* * *
23908065 TTTCATAGATCGCTATAAAGGCTTCCTTTTTCATAAATCACCACGAAGGCTT-CTT
1 TTTCATAGATCGCCACAAAGGCTTCCTTTTTCATAAATCACCACAAAGGCTTCCTT
* * *
23908120 TTTCATAGATTGCCACAAAGGCTTCTTTTTTCATAAATCGCCACAAAGGCTTCCTT
1 TTTCATAGATCGCCACAAAGGCTTCCTTTTTCATAAATCACCACAAAGGCTTCCTT
*
23908176 TTTCATAGATTGCCACAAA
1 TTTCATAGATCGCCACAAA
23908195 TACTTTTTTT
Statistics
Matches: 68, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
55 46 0.68
56 22 0.32
ACGTcount: A:0.28, C:0.24, G:0.12, T:0.35
Consensus pattern (56 bp):
TTTCATAGATCGCCACAAAGGCTTCCTTTTTCATAAATCACCACAAAGGCTTCCTT
Found at i:23917794 original size:13 final size:13
Alignment explanation
Indices: 23917759--23917798 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
23917749 TTAAAGTGGA
*
23917759 AATTTTGAAAAAT
1 AATTTTAAAAAAT
*
23917772 AATATGTAAAAAAT
1 AAT-TTTAAAAAAT
23917786 AATTTTAAAAAAT
1 AATTTTAAAAAAT
23917799 TCGAAGTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
13 12 0.52
14 11 0.48
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (13 bp):
AATTTTAAAAAAT
Found at i:23919604 original size:18 final size:19
Alignment explanation
Indices: 23919573--23919617 Score: 58
Period size: 17 Copynumber: 2.4 Consensus size: 19
23919563 AAACCTTACT
*
23919573 AAGATAAAAATCCT-GTGA
1 AAGAAAAAAATCCTAGTGA
23919591 AA-AAAAAAATTCCTAGTGA
1 AAGAAAAAAA-TCCTAGTGA
23919610 AAGAAAAA
1 AAGAAAAA
23919618 GAGTACATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 6 0.26
18 6 0.26
19 6 0.26
20 5 0.22
ACGTcount: A:0.60, C:0.09, G:0.13, T:0.18
Consensus pattern (19 bp):
AAGAAAAAAATCCTAGTGA
Found at i:23926386 original size:16 final size:17
Alignment explanation
Indices: 23926365--23926424 Score: 63
Period size: 16 Copynumber: 3.6 Consensus size: 17
23926355 GAATTTACTT
23926365 ATTATAT-AAGTAAATA
1 ATTATATAAAGTAAATA
*
23926381 ATTATATAAAGTAAATT
1 ATTATATAAAGTAAATA
* *
23926398 A-TAT-TAAATTATATA
1 ATTATATAAAGTAAATA
23926413 ATTATAATAAAG
1 ATTAT-ATAAAG
23926425 AATGAATAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
15 9 0.26
16 13 0.37
17 9 0.26
18 4 0.11
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (17 bp):
ATTATATAAAGTAAATA
Found at i:23926399 original size:30 final size:33
Alignment explanation
Indices: 23926365--23926424 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 33
23926355 GAATTTACTT
23926365 ATTATA-T-AAGTAAATAATTAT-ATAAAGTAA
1 ATTATATTAAAGTAAATAATTATAATAAAGTAA
* *
23926395 ATTATATTAAATTATATAATTATAATAAAG
1 ATTATATTAAAGTAAATAATTATAATAAAG
23926425 AATGAATAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 6 0.24
31 1 0.04
32 12 0.48
33 6 0.24
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (33 bp):
ATTATATTAAAGTAAATAATTATAATAAAGTAA
Found at i:23926521 original size:12 final size:12
Alignment explanation
Indices: 23926504--23926533 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
23926494 AAAGAAAGAG
23926504 GAAAAATGGAAA
1 GAAAAATGGAAA
23926516 GAAAAA-GGAAA
1 GAAAAATGGAAA
23926527 GAAAAAT
1 GAAAAAT
23926534 TTAGGGTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.70, C:0.00, G:0.23, T:0.07
Consensus pattern (12 bp):
GAAAAATGGAAA
Found at i:23931133 original size:13 final size:12
Alignment explanation
Indices: 23931101--23931138 Score: 51
Period size: 12 Copynumber: 3.1 Consensus size: 12
23931091 GTGTATAGAT
23931101 AAATAAAAAGAG
1 AAATAAAAAGAG
23931113 AAATAAAAAGA-
1 AAATAAAAAGAG
23931124 ATAATAAAAAAGAG
1 A-AAT-AAAAAGAG
23931138 A
1 A
23931139 GAATTTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 1 0.04
12 14 0.61
13 7 0.30
14 1 0.04
ACGTcount: A:0.76, C:0.00, G:0.13, T:0.11
Consensus pattern (12 bp):
AAATAAAAAGAG
Found at i:23931960 original size:17 final size:16
Alignment explanation
Indices: 23931938--23931985 Score: 62
Period size: 15 Copynumber: 3.0 Consensus size: 16
23931928 CACGACTTAC
23931938 TATTATATATATATTAT
1 TATTATATATATATT-T
*
23931955 TATTATGTATAT-TTT
1 TATTATATATATATTT
*
23931970 TAGTATATATATATTT
1 TATTATATATATATTT
23931986 ATGAAGTATT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
15 11 0.41
16 5 0.19
17 11 0.41
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.60
Consensus pattern (16 bp):
TATTATATATATATTT
Found at i:23932029 original size:18 final size:20
Alignment explanation
Indices: 23932006--23932044 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 20
23931996 ATCAACAGTT
23932006 TTTTTAACAT-TAT-TATTA
1 TTTTTAACATGTATATATTA
*
23932024 TTTTTAATATGTATATATTA
1 TTTTTAACATGTATATATTA
23932044 T
1 T
23932045 GTATATATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 9 0.50
19 3 0.17
20 6 0.33
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.62
Consensus pattern (20 bp):
TTTTTAACATGTATATATTA
Found at i:23932099 original size:20 final size:19
Alignment explanation
Indices: 23932038--23932102 Score: 71
Period size: 20 Copynumber: 3.4 Consensus size: 19
23932028 TAATATGTAT
23932038 ATATTATGTATATATTTTA
1 ATATTATGTATATATTTTA
* *
23932057 ATACTACAT-TATATATATT-
1 ATA-T-TATGTATATATTTTA
23932076 ATATTATGTATATATTTCTA
1 ATATTATGTATATATTT-TA
23932096 ATATTAT
1 ATATTAT
23932103 ATATTAAGTA
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
17 2 0.05
18 9 0.24
19 7 0.19
20 17 0.46
21 2 0.05
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.54
Consensus pattern (19 bp):
ATATTATGTATATATTTTA
Found at i:23932103 original size:16 final size:16
Alignment explanation
Indices: 23932064--23932107 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
23932054 TTAATACTAC
*
23932064 ATTATATATATTATATT
1 ATTATATAT-TTATAAT
*
23932081 ATGTATATATTTCTAAT
1 AT-TATATATTTATAAT
23932098 ATTATATATT
1 ATTATATATT
23932108 AAGTATTTCT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 8 0.33
17 9 0.38
18 7 0.29
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (16 bp):
ATTATATATTTATAAT
Found at i:23932118 original size:23 final size:23
Alignment explanation
Indices: 23932071--23932131 Score: 72
Period size: 23 Copynumber: 2.6 Consensus size: 23
23932061 TACATTATAT
23932071 ATATTATATTATGTATATATTTCTA
1 ATATTATA-TAT-TATATATTTCTA
23932096 ATATTATATATTA-AGTATTTCTA
1 ATATTATATATTATA-TATTTCTA
*
23932119 ATATCAT-TATTAT
1 ATATTATATATTAT
23932132 TTATATATAT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
22 6 0.18
23 16 0.48
24 3 0.09
25 8 0.24
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.54
Consensus pattern (23 bp):
ATATTATATATTATATATTTCTA
Found at i:23932234 original size:24 final size:22
Alignment explanation
Indices: 23932207--23932325 Score: 98
Period size: 23 Copynumber: 5.0 Consensus size: 22
23932197 CTAATGTGTA
*
23932207 TATATATATATATCGTATATGTTT
1 TATATATAT-TAT-GTATATATTT
23932231 TATATATATTATGTATATATTT
1 TATATATATTATGTATATATTT
*
23932253 TCA-ATATTATTA-GTTATATTTTT
1 T-ATATA-TATTATG-TATATATTT
*
23932276 TATATACTATTCCATGTACATATTTT
1 TATATA-TATT--ATGTATATA-TTT
*
23932302 TATATCATCTTATGTATATATTT
1 TATAT-ATATTATGTATATATTT
23932325 T
1 T
23932326 TAAACACTAT
Statistics
Matches: 79, Mismatches: 7, Indels: 19
0.75 0.07 0.18
Matches are distributed among these distances:
22 15 0.19
23 29 0.37
24 17 0.22
25 5 0.06
26 12 0.15
27 1 0.01
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.56
Consensus pattern (22 bp):
TATATATATTATGTATATATTT
Found at i:23932326 original size:24 final size:23
Alignment explanation
Indices: 23932207--23932345 Score: 106
Period size: 24 Copynumber: 5.8 Consensus size: 23
23932197 CTAATGTGTA
*
23932207 TATATATATATATCGTATAT-GTTT
1 TATATATAT-TAT-GTATATATTTT
23932231 TATATATATTATGTATATATTTT
1 TATATATATTATGTATATATTTT
*
23932254 CA-ATATTATTA-GT-TATATTTTT
1 TATATA-TATTATGTATATA-TTTT
*
23932276 TATATACTATTCCATGTACATATTTT
1 TATATA-TATT--ATGTATATATTTT
*
23932302 TATATCATCTTATGTATATATTTT
1 TATAT-ATATTATGTATATATTTT
* * *
23932326 TAAACACTATTATATATATA
1 TATATA-TATTATGTATATA
23932346 CATATTTTTA
Statistics
Matches: 94, Mismatches: 11, Indels: 20
0.75 0.09 0.16
Matches are distributed among these distances:
21 4 0.04
22 16 0.17
23 20 0.21
24 35 0.37
25 1 0.01
26 14 0.15
27 4 0.04
ACGTcount: A:0.35, C:0.07, G:0.04, T:0.54
Consensus pattern (23 bp):
TATATATATTATGTATATATTTT
Found at i:23932574 original size:21 final size:22
Alignment explanation
Indices: 23932532--23932674 Score: 74
Period size: 22 Copynumber: 6.0 Consensus size: 22
23932522 CACTTATTAT
23932532 TTTATTTTAATATTATTATGTA
1 TTTATTTTAATATTATTATGTA
**
23932554 TTTATTTTCAATATATATGTACATA
1 TTTATTTT-AATAT-TAT-TATGTA
* *
23932579 TTTA-TTAATATATTTTTATGTTA
1 TTTATTTTA-ATATTATTATG-TA
* * *
23932602 TTAATATTTATAATAGATATTGTATA
1 TT--TATTT-TAATA-TTATTATGTA
23932628 TGTTCATTTT-ATATATATTATGTA
1 T-TT-ATTTTAATAT-TATTATGTA
* **
23932652 TATATTTTTGTATTATTATGTA
1 TTTATTTTAATATTATTATGTA
23932674 T
1 T
23932675 ACACTTTTCA
Statistics
Matches: 91, Mismatches: 16, Indels: 28
0.67 0.12 0.21
Matches are distributed among these distances:
22 25 0.27
23 16 0.18
24 20 0.22
25 12 0.13
26 12 0.13
27 6 0.07
ACGTcount: A:0.33, C:0.02, G:0.06, T:0.59
Consensus pattern (22 bp):
TTTATTTTAATATTATTATGTA
Found at i:23932580 original size:25 final size:22
Alignment explanation
Indices: 23932532--23932584 Score: 61
Period size: 25 Copynumber: 2.3 Consensus size: 22
23932522 CACTTATTAT
**
23932532 TTTATTTTAATATTATTATGTA
1 TTTATTTTAATATTATTACATA
23932554 TTTATTTTCAATATATATGTACATA
1 TTTATTTT-AATAT-TAT-TACATA
23932579 TTTATT
1 TTTATT
23932585 AATATATTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 8 0.31
23 5 0.19
24 3 0.12
25 10 0.38
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.60
Consensus pattern (22 bp):
TTTATTTTAATATTATTACATA
Found at i:23932682 original size:22 final size:23
Alignment explanation
Indices: 23932634--23932682 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 23
23932624 TATATGTTCA
* *
23932634 TTTTATATATATTATGTATATAT
1 TTTTATATATATTATGTATACAC
*
23932657 TTTTGTAT-TATTATGTATACAC
1 TTTTATATATATTATGTATACAC
23932679 TTTT
1 TTTT
23932683 CATTCCTATT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 16 0.70
23 7 0.30
ACGTcount: A:0.29, C:0.04, G:0.06, T:0.61
Consensus pattern (23 bp):
TTTTATATATATTATGTATACAC
Found at i:23955993 original size:30 final size:30
Alignment explanation
Indices: 23955957--23956046 Score: 180
Period size: 30 Copynumber: 3.0 Consensus size: 30
23955947 ATAGCCTAAA
23955957 GATTGATAAACCGGCTTTTCATTCAACTGC
1 GATTGATAAACCGGCTTTTCATTCAACTGC
23955987 GATTGATAAACCGGCTTTTCATTCAACTGC
1 GATTGATAAACCGGCTTTTCATTCAACTGC
23956017 GATTGATAAACCGGCTTTTCATTCAACTGC
1 GATTGATAAACCGGCTTTTCATTCAACTGC
23956047 TGTTTTTACA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 60 1.00
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (30 bp):
GATTGATAAACCGGCTTTTCATTCAACTGC
Found at i:23956774 original size:43 final size:41
Alignment explanation
Indices: 23956665--23956775 Score: 118
Period size: 42 Copynumber: 2.6 Consensus size: 41
23956655 TGTTCTCGTT
* *
23956665 TAAGACCAGGTCTGGGACGTTGGCATCGATATGTGATTCGTG
1 TAAGACCA-GTCTGGGACGTTGGCATCGACATGTGATTCATG
*
23956707 TAAGATCCTA-TCTGGGATAG-TGGCATCGACATGTGATTACATG
1 TAAGA-CC-AGTCTGGGA-CGTTGGCATCGACATGTGATT-CATG
*
23956750 TAAGACCACGTTTGGGACGTTGGCAT
1 TAAGACCA-GTCTGGGACGTTGGCAT
23956776 TGTACGATAT
Statistics
Matches: 57, Mismatches: 5, Indels: 13
0.76 0.07 0.17
Matches are distributed among these distances:
41 1 0.02
42 32 0.56
43 23 0.40
44 1 0.02
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.29
Consensus pattern (41 bp):
TAAGACCAGTCTGGGACGTTGGCATCGACATGTGATTCATG
Found at i:23958658 original size:40 final size:40
Alignment explanation
Indices: 23958435--23958644 Score: 305
Period size: 40 Copynumber: 5.3 Consensus size: 40
23958425 TCCTCGTTCA
* * * * * *
23958435 AATGCCTTCGGGACATAGCCCTGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
23958474 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
23958514 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
23958554 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
23958594 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
23958634 AAGGCCTTCGG
1 AATGCCTTCGG
23958645 ATCTTAGTCC
Statistics
Matches: 158, Mismatches: 12, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 33 0.21
40 125 0.79
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:23958681 original size:80 final size:80
Alignment explanation
Indices: 23958438--23958697 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
23958428 TCGTTCAAAT
* * * * * * * * *
23958438 GCCTTCGGGACATAGCCCTGTTTTAGTAACTCACAC-AATGCCTTCGGGACATAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
* * *
23958502 ACAACTCGCACGAAT
66 ATAACTAGCACGAAA
* * *
23958517 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
* *
23958582 ATAACTCGCACGAAT
66 ATAACTAGCACGAAA
* * **
23958597 GCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAGTCCGGATAT
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGA-CTTAACCCGGATAT
* **
23958661 ATTCGCTTAGCAC-AAA
65 AATAAC-TAGCACGAAA
*
23958677 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
23958698 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
79 33 0.21
80 119 0.76
81 5 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
ATAACTAGCACGAAA
Found at i:23958681 original size:120 final size:118
Alignment explanation
Indices: 23958433--23958697 Score: 298
Period size: 120 Copynumber: 2.2 Consensus size: 118
23958423 GCTCCTCGTT
* * * *
23958433 CAAATGCCTTCGGGACATAGCCCTGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGA
1 CAAA-GCCTTCGGGACTTAGCCCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGGA
* * * *
23958498 TTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
65 TTTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATAATAACTAGCA
* * * *
23958552 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 C-AAAGCCTTCGGGACTTAGCCCGGATTTAATAACTCACAC-AATGCCTTCGGGACATAACCCGG
** * ** * **
23958617 ATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAGTCCGGATATATTCGCTTAGCA
64 ATTTAACAACTCGCACAAAGGCCTTCGGGA-CTTAACCCGGATATAATAAC-TAGCA
23958673 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
23958698 CAGCATTCAA
Statistics
Matches: 120, Mismatches: 22, Indels: 7
0.81 0.15 0.05
Matches are distributed among these distances:
119 34 0.28
120 81 0.68
121 5 0.04
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (118 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGGAT
TTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATAATAACTAGCA
Found at i:23963793 original size:49 final size:49
Alignment explanation
Indices: 23963733--23963860 Score: 141
Period size: 49 Copynumber: 2.6 Consensus size: 49
23963723 ACATTAGAAT
* * * *
23963733 CGATGTCATGTCCCAGAAAGATCTTACACTGACTTTCATATATCGAGGC
1 CGATGCCATGTCCCAGAAAGGTCTTACACTGACTCTCATATATCGAGAC
* * * * *
23963782 CGATGCTATGTCCCA-AACAGGTCTTACACTGGCTCTCATTTATCGATAT
1 CGATGCCATGTCCCAGAA-AGGTCTTACACTGACTCTCATATATCGAGAC
* *
23963831 TGATGCCATGTCCCAGACAGGTCTTACACT
1 CGATGCCATGTCCCAGAAAGGTCTTACACT
23963861 AGCTTGTATA
Statistics
Matches: 65, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
48 2 0.03
49 62 0.95
50 1 0.02
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.30
Consensus pattern (49 bp):
CGATGCCATGTCCCAGAAAGGTCTTACACTGACTCTCATATATCGAGAC
Found at i:23963856 original size:98 final size:95
Alignment explanation
Indices: 23963734--23963955 Score: 234
Period size: 98 Copynumber: 2.3 Consensus size: 95
23963724 CATTAGAATC
* * * *
23963734 GATGTCATGTCCCAGAAAGATCTTACACTGA-CTT-TCATATATCGAGGCCGATGCTATGTCCCA
1 GATG-CATGTCCCAGACAGGTCTTACACTGAGCTTGT-ATATATCGAGGCCGATG-AATGCCCCA
* * *
23963797 AACAGGTCTTACACTGGCTCTCATTTATCGATATT
63 AACAGGTCTTACACTAGCTCTC--GTATCAATATT
* * *
23963832 GATGCCATGTCCCAGACAGGTCTTACACT-AGCTTGTATATCTCGAGGTCGATGAATGCCCCAGA
1 GATG-CATGTCCCAGACAGGTCTTACACTGAGCTTGTATATATCGAGGCCGATGAATGCCCCAAA
* * *
23963896 CATGTCTTACACTAGCTCTCGTCTCAATGTT
65 CAGGTCTTACACTAGCTCTCGTATCAATATT
* *
23963927 GATGCATGTCCCAGACATGTGTTACACTG
1 GATGCATGTCCCAGACAGGTCTTACACTG
23963956 GCTCGCATAC
Statistics
Matches: 105, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
94 22 0.21
95 11 0.10
97 27 0.26
98 44 0.42
99 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (95 bp):
GATGCATGTCCCAGACAGGTCTTACACTGAGCTTGTATATATCGAGGCCGATGAATGCCCCAAAC
AGGTCTTACACTAGCTCTCGTATCAATATT
Found at i:23963952 original size:46 final size:47
Alignment explanation
Indices: 23963830--23963959 Score: 136
Period size: 46 Copynumber: 2.7 Consensus size: 47
23963820 TTTATCGATA
* * * *
23963830 TTGATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGG
1 TTGATG-CATGTCCCAGACATGTCTTACACTAGC-TCTACATCTCAAGG
* * * * *
23963879 TCGATGAATGCCCCAGACATGTCTTACACTAGCTCT-CGTCTCAATG
1 TTGATGCATGTCCCAGACATGTCTTACACTAGCTCTACATCTCAAGG
* *
23963925 TTGATGCATGTCCCAGACATGTGTTACACTGGCTC
1 TTGATGCATGTCCCAGACATGTCTTACACTAGCTC
23963960 GCATACCATC
Statistics
Matches: 67, Mismatches: 14, Indels: 3
0.80 0.17 0.04
Matches are distributed among these distances:
46 36 0.54
47 2 0.03
48 24 0.36
49 5 0.07
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.30
Consensus pattern (47 bp):
TTGATGCATGTCCCAGACATGTCTTACACTAGCTCTACATCTCAAGG
Found at i:23975238 original size:28 final size:27
Alignment explanation
Indices: 23975181--23975332 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
23975171 TAAATTGTGC
*
23975181 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
23975208 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
23975236 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
23975263 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
23975291 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
23975318 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
23975333 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:23975245 original size:55 final size:55
Alignment explanation
Indices: 23975181--23975332 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
23975171 TAAATTGTGC
*
23975181 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
23975236 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
23975291 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
23975333 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:23983549 original size:28 final size:27
Alignment explanation
Indices: 23983492--23983643 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
23983482 TAAATTGTGC
*
23983492 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
23983519 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
23983547 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
23983574 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
23983602 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
23983629 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
23983644 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:23983556 original size:55 final size:55
Alignment explanation
Indices: 23983492--23983643 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
23983482 TAAATTGTGC
*
23983492 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
23983547 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
23983602 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
23983644 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:23991855 original size:28 final size:27
Alignment explanation
Indices: 23991798--23991949 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
23991788 TAAATTGTGC
*
23991798 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
23991825 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
23991853 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
23991880 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
23991908 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
23991935 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
23991950 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:23991862 original size:55 final size:55
Alignment explanation
Indices: 23991798--23991949 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
23991788 TAAATTGTGC
*
23991798 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
23991853 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
23991908 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
23991950 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:24010473 original size:46 final size:47
Alignment explanation
Indices: 24010394--24010509 Score: 141
Period size: 46 Copynumber: 2.5 Consensus size: 47
24010384 CAAAGTAATA
24010394 TCCCAGACATGGTCTTACACTGACTATCATCTCG-TAGCCGATG-CATG
1 TCCCAGACATGGTCTTACACTGAC-ATCATCTCGAT-GCCGATGCCATG
* *
24010441 TCCTAGACAT-GTCTTACACT-AGCACTCGTCTCGATGCCGATGCCATG
1 TCCCAGACATGGTCTTACACTGA-CA-TCATCTCGATGCCGATGCCATG
*
24010488 TCCCAAACATGGTCTTACACTG
1 TCCCAGACATGGTCTTACACTG
24010510 GCTCTAATAA
Statistics
Matches: 59, Mismatches: 4, Indels: 10
0.81 0.05 0.14
Matches are distributed among these distances:
45 2 0.03
46 25 0.42
47 22 0.37
48 10 0.17
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (47 bp):
TCCCAGACATGGTCTTACACTGACATCATCTCGATGCCGATGCCATG
Found at i:24024921 original size:20 final size:20
Alignment explanation
Indices: 24024880--24024949 Score: 63
Period size: 22 Copynumber: 3.3 Consensus size: 20
24024870 ACAGGAATAG
24024880 TATATAAAA-ATATA-ACTAA
1 TATATAAAACATATACA-TAA
*
24024899 TAATATTGAAAATATATACATAA
1 T-ATA-T-AAAACATATACATAA
24024922 TATATAAAACATATACGATATA
1 TATATAAAACATATAC-ATA-A
24024944 TATATA
1 TATATA
24024950 TATACACATT
Statistics
Matches: 43, Mismatches: 1, Indels: 11
0.78 0.02 0.20
Matches are distributed among these distances:
19 1 0.02
20 13 0.30
21 5 0.12
22 14 0.33
23 9 0.21
24 1 0.02
ACGTcount: A:0.57, C:0.06, G:0.03, T:0.34
Consensus pattern (20 bp):
TATATAAAACATATACATAA
Done.