Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 74 of 344
Found at i:24024922 original size:23 final size:24
Alignment explanation
Indices: 24024837--24024936 Score: 86
Period size: 22 Copynumber: 4.3 Consensus size: 24
24024827 AATAGTGTTT
*
24024837 AAAATATATACATAA-GATGATATA
1 AAAATATATACATAATAAT-ATATA
* * *
24024861 AAAATATGTACAGGAATAGTATATA
1 AAAATATATACA-TAATAATATATA
*
24024886 AAAATATA-AC-TAATAATAT-TG
1 AAAATATATACATAATAATATATA
24024907 AAAATATATACATAAT-ATATA-A
1 AAAATATATACATAATAATATATA
*
24024929 AACATATA
1 AAAATATA
24024937 CGATATATAT
Statistics
Matches: 61, Mismatches: 10, Indels: 12
0.73 0.12 0.14
Matches are distributed among these distances:
21 9 0.15
22 20 0.33
23 4 0.07
24 13 0.21
25 14 0.23
26 1 0.02
ACGTcount: A:0.58, C:0.05, G:0.07, T:0.30
Consensus pattern (24 bp):
AAAATATATACATAATAATATATA
Found at i:24025062 original size:23 final size:23
Alignment explanation
Indices: 24025019--24025085 Score: 82
Period size: 23 Copynumber: 2.8 Consensus size: 23
24025009 GTACGTATAT
*
24025019 ATATATAATAATAATGATATTAGAA
1 ATATATAAT-AT-ATAATATTAGAA
24025044 ATACT-TAATATATAATATTAGAA
1 ATA-TATAATATATAATATTAGAA
24025067 ATATATACATATATAATAT
1 ATATATA-ATATATAATAT
24025086 ATATAATGTA
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
22 1 0.03
23 16 0.42
24 13 0.34
25 7 0.18
26 1 0.03
ACGTcount: A:0.54, C:0.03, G:0.04, T:0.39
Consensus pattern (23 bp):
ATATATAATATATAATATTAGAA
Found at i:24025149 original size:18 final size:20
Alignment explanation
Indices: 24025112--24025150 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 20
24025102 AAATATATAC
24025112 ATAATATATACATATTAAAA
1 ATAATATATACATATTAAAA
*
24025132 ATAATA-ATA-ATGTTAAAA
1 ATAATATATACATATTAAAA
24025150 A
1 A
24025151 AACTGTTGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 9 0.50
19 3 0.17
20 6 0.33
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.33
Consensus pattern (20 bp):
ATAATATATACATATTAAAA
Found at i:24025217 original size:14 final size:14
Alignment explanation
Indices: 24025175--24025217 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
24025165 CTTCATAAAT
24025175 ATATATATACTAA-A
1 ATATATATA-TAATA
*
24025189 ATATACATAATAATA
1 ATATATAT-ATAATA
24025204 ATATATATATAATA
1 ATATATATATAATA
24025218 GTAAGTCGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
14 16 0.64
15 9 0.36
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (14 bp):
ATATATATATAATA
Found at i:24025467 original size:39 final size:39
Alignment explanation
Indices: 24025387--24025467 Score: 94
Period size: 39 Copynumber: 2.1 Consensus size: 39
24025377 AAATAAATAC
* * * *
24025387 TAAGACTAATAATAGTAATATTATTAATTATAGATACAA
1 TAAGAATAATAATACTAATATAATTAATTATAGATAAAA
24025426 TAAGAATAATAATACTAA-ATAATTAATTAAATAG-TAAAA
1 TAAGAATAATAATACTAATATAATTAATT--ATAGATAAAA
24025465 TAA
1 TAA
24025468 CTAAAAAAGA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
38 9 0.25
39 23 0.64
40 4 0.11
ACGTcount: A:0.57, C:0.04, G:0.06, T:0.33
Consensus pattern (39 bp):
TAAGAATAATAATACTAATATAATTAATTATAGATAAAA
Found at i:24030709 original size:15 final size:16
Alignment explanation
Indices: 24030658--24030712 Score: 62
Period size: 15 Copynumber: 3.6 Consensus size: 16
24030648 CTTTATTCAT
*
24030658 CTTTATATAATTATATA
1 CTTTATAT-ATTATTTA
*
24030675 ATTTA-ATA-TATTTA
1 CTTTATATATTATTTA
24030689 CTTTATATATTATTTA
1 CTTTATATATTATTTA
24030705 C-TTATATA
1 CTTTATATA
24030713 ATAAGTAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
14 9 0.27
15 11 0.33
16 9 0.27
17 4 0.12
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.56
Consensus pattern (16 bp):
CTTTATATATTATTTA
Found at i:24035717 original size:21 final size:21
Alignment explanation
Indices: 24035693--24035744 Score: 50
Period size: 21 Copynumber: 2.5 Consensus size: 21
24035683 AAACAGAAGA
*
24035693 AGCAGCAAAAGAAGCAGAGGC
1 AGCAACAAAAGAAGCAGAGGC
** *
24035714 AGCAACAAGGGCAGCAGAGGC
1 AGCAACAAAAGAAGCAGAGGC
* *
24035735 AACAAGAAAA
1 AGCAACAAAA
24035745 TATGACAAAC
Statistics
Matches: 23, Mismatches: 8, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.50, C:0.19, G:0.31, T:0.00
Consensus pattern (21 bp):
AGCAACAAAAGAAGCAGAGGC
Found at i:24037386 original size:18 final size:18
Alignment explanation
Indices: 24037352--24037396 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
24037342 ATATGTACTC
24037352 TTTTTCTTTCACTAGGAAT
1 TTTTTCTTTCACTAGG-AT
*
24037371 TTTTTTTTTCAC-AGGAT
1 TTTTTCTTTCACTAGGAT
24037388 TTTTATCTT
1 TTTT-TCTT
24037397 AGTAAGGTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 6 0.26
18 6 0.26
19 11 0.48
ACGTcount: A:0.18, C:0.13, G:0.09, T:0.60
Consensus pattern (18 bp):
TTTTTCTTTCACTAGGAT
Found at i:24040570 original size:14 final size:16
Alignment explanation
Indices: 24040545--24040576 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
24040535 TATATATTTC
24040545 TTAAACTTATTT-TAT
1 TTAAACTTATTTATAT
24040560 TTAAA-TTATTTATAT
1 TTAAACTTATTTATAT
24040575 TT
1 TT
24040577 TTACAAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.62
Consensus pattern (16 bp):
TTAAACTTATTTATAT
Found at i:24048806 original size:28 final size:28
Alignment explanation
Indices: 24048775--24048922 Score: 174
Period size: 28 Copynumber: 5.3 Consensus size: 28
24048765 AAAAAAAGTA
*
24048775 TTTGTGGCAATCTATGAAAAAGGAAGCC
1 TTTGTGGCGATCTATGAAAAAGGAAGCC
* *
24048803 TTTGTGGCGATTTATGAAAAAAGAAGCC
1 TTTGTGGCGATCTATGAAAAAGGAAGCC
* *
24048831 TTTGTGGCAATCTATGAAAAAAGAAGCC
1 TTTGTGGCGATCTATGAAAAAGGAAGCC
* * *
24048859 TTCGTGGTGATTTATGAAAAAGGAAGCC
1 TTTGTGGCGATCTATGAAAAAGGAAGCC
* *
24048887 TTTATAGCGATCTATG--AAAGGAAAGCC
1 TTTGTGGCGATCTATGAAAAAGG-AAGCC
*
24048914 ATTGTGGCG
1 TTTGTGGCG
24048923 TACTCTAAAG
Statistics
Matches: 101, Mismatches: 18, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
26 5 0.05
27 11 0.11
28 85 0.84
ACGTcount: A:0.34, C:0.13, G:0.26, T:0.27
Consensus pattern (28 bp):
TTTGTGGCGATCTATGAAAAAGGAAGCC
Found at i:24048849 original size:56 final size:56
Alignment explanation
Indices: 24048775--24048922 Score: 201
Period size: 56 Copynumber: 2.7 Consensus size: 56
24048765 AAAAAAAGTA
24048775 TTTGTGGCAATCTATGAAAAAGGAAGCCTTTGTGGCGATTTATGAAAAAAGAAGCC
1 TTTGTGGCAATCTATGAAAAAGGAAGCCTTTGTGGCGATTTATGAAAAAAGAAGCC
* * * *
24048831 TTTGTGGCAATCTATGAAAAAAGAAGCCTTCGTGGTGATTTATGAAAAAGGAAGCC
1 TTTGTGGCAATCTATGAAAAAGGAAGCCTTTGTGGCGATTTATGAAAAAAGAAGCC
* * * *
24048887 TTTATAGCGATCTATG--AAAGGAAAGCCATTGTGGCG
1 TTTGTGGCAATCTATGAAAAAGG-AAGCCTTTGTGGCG
24048923 TACTCTAAAG
Statistics
Matches: 80, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
54 4 0.05
55 11 0.14
56 65 0.81
ACGTcount: A:0.34, C:0.13, G:0.26, T:0.27
Consensus pattern (56 bp):
TTTGTGGCAATCTATGAAAAAGGAAGCCTTTGTGGCGATTTATGAAAAAAGAAGCC
Found at i:24051013 original size:6 final size:6
Alignment explanation
Indices: 24051003--24051042 Score: 71
Period size: 6 Copynumber: 6.7 Consensus size: 6
24050993 AGAAAATAAT
*
24051003 AAAATT AAAATA AAAATA AAAATA AAAATA AAAATA AAAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAA
24051043 GATAAGAGGA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAATA
Found at i:24059651 original size:27 final size:27
Alignment explanation
Indices: 24059618--24059766 Score: 246
Period size: 27 Copynumber: 5.6 Consensus size: 27
24059608 TAAATTGTGC
*
24059618 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
24059645 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
24059672 AGCACTAAGTGTGCGAGTTGA-TATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
24059698 AGCACTAAGTGTGCGAGTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
* *
24059725 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
24059752 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
24059767 GACTTAATAT
Statistics
Matches: 118, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
26 26 0.22
27 92 0.78
ACGTcount: A:0.27, C:0.13, G:0.30, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:24059708 original size:53 final size:54
Alignment explanation
Indices: 24059618--24059766 Score: 246
Period size: 53 Copynumber: 2.8 Consensus size: 54
24059608 TAAATTGTGC
*
24059618 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
*
24059672 AGCACTAAGTGTGCGAGTTGA-TATGTAGCACTAAGTGTGCGAGTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
* * *
24059725 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
24059767 GACTTAATAT
Statistics
Matches: 90, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
53 52 0.58
54 38 0.42
ACGTcount: A:0.27, C:0.13, G:0.30, T:0.30
Consensus pattern (54 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
Found at i:24059755 original size:80 final size:80
Alignment explanation
Indices: 24059618--24059766 Score: 253
Period size: 80 Copynumber: 1.9 Consensus size: 80
24059608 TAAATTGTGC
*
24059618 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTG
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTGACTATATAGCACTAAGTG
24059683 TGCGAGTTGATATGT
66 TGCGAGTTGATATGT
* * * *
24059698 AGCACTAAGTGTGCGAGTTGATTATGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTG
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTGACTATATAGCACTAAGTG
24059763 TGCG
66 TGCG
24059767 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
80 64 1.00
ACGTcount: A:0.27, C:0.13, G:0.30, T:0.30
Consensus pattern (80 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTGACTATATAGCACTAAGTG
TGCGAGTTGATATGT
Found at i:24067980 original size:28 final size:27
Alignment explanation
Indices: 24067923--24068074 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
24067913 TAAATTGTGC
*
24067923 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
24067950 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
24067978 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
24068005 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
24068033 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
24068060 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
24068075 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:24067987 original size:55 final size:55
Alignment explanation
Indices: 24067923--24068074 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
24067913 TAAATTGTGC
*
24067923 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
24067978 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
24068033 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
24068075 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:24076271 original size:28 final size:27
Alignment explanation
Indices: 24076214--24076365 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
24076204 TAAATTGTGC
*
24076214 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
24076241 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
24076269 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
24076296 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
24076324 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
24076351 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
24076366 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:24076278 original size:55 final size:55
Alignment explanation
Indices: 24076214--24076365 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
24076204 TAAATTGTGC
*
24076214 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
24076269 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
24076324 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
24076366 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:24094848 original size:46 final size:47
Alignment explanation
Indices: 24094769--24094884 Score: 141
Period size: 46 Copynumber: 2.5 Consensus size: 47
24094759 CAAAGTAATA
24094769 TCCCAGACATGGTCTTACACTGACTATCATCTCG-TAGCCGATG-CATG
1 TCCCAGACATGGTCTTACACTGAC-ATCATCTCGAT-GCCGATGCCATG
* *
24094816 TCCTAGACAT-GTCTTACACT-AGCACTCGTCTCGATGCCGATGCCATG
1 TCCCAGACATGGTCTTACACTGA-CA-TCATCTCGATGCCGATGCCATG
*
24094863 TCCCAAACATGGTCTTACACTG
1 TCCCAGACATGGTCTTACACTG
24094885 GCTCTAATAA
Statistics
Matches: 59, Mismatches: 4, Indels: 10
0.81 0.05 0.14
Matches are distributed among these distances:
45 2 0.03
46 25 0.42
47 22 0.37
48 10 0.17
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (47 bp):
TCCCAGACATGGTCTTACACTGACATCATCTCGATGCCGATGCCATG
Found at i:24102418 original size:46 final size:45
Alignment explanation
Indices: 24102368--24102535 Score: 176
Period size: 46 Copynumber: 3.6 Consensus size: 45
24102358 TCTTATAGCT
*
24102368 GATGCATGTCCCAGACATGTCTTGCACTGGCTTACATCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTT-CATCTCGAGGCC
* * ** * *
24102414 GATGCATGTCCTAGACATGTCTTACACTAGCACCCGTCTCGATGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGC-TTCATCTCGAGGCC
* * **
24102460 GATGCTATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGTT
1 GATGC-ATGTCCCAGACAT-GTCTTACACTGGCT-TCAT-CTCGAGGCC
24102508 GATGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
24102536 AGCCCACAAT
Statistics
Matches: 100, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
46 53 0.53
47 25 0.25
48 21 0.21
49 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.21, T:0.29
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTCATCTCGAGGCC
Found at i:24102471 original size:140 final size:141
Alignment explanation
Indices: 24102270--24102535 Score: 347
Period size: 140 Copynumber: 1.9 Consensus size: 141
24102260 TGGGTAAGGT
* * *
24102270 GCCGATGCCATGTCCTAGACACGGTCTTACACTAGCTCATATCTCATGTCGATGCCATGTCCCAA
1 GCCGATGCCATGTCCTAGACACGGTCTTACACTAGCACACATCTCATGCCGATGCCATGTCCCAA
* * ** *
24102335 ACATGGTTTTACACTGATTATCATCTTATAGCTGATGCATGTCCCAGACATGTCTTGCACTGGCT
66 ACATGGTCTTACACTGACTATCATAATATAGCTGATGCATGTCCCAGACATGTCTTACACTGGCT
24102400 TACATCTCGAG
131 TACATCTCGAG
* * * *
24102411 GCCGATG-CATGTCCTAGACA-TGTCTTACACTAGCACCCGTCTCGATGCCGATGCTATGTCCCA
1 GCCGATGCCATGTCCTAGACACGGTCTTACACTAGCACACATCTC-ATGCCGATGCCATGTCCCA
* * * * * *
24102474 GACATGGTCTTACACTGGCTCTCATAATGTGGTTGATGCATGTCCCAGACATGTCTTACACT
65 AACATGGTCTTACACTGACTATCATAATATAGCTGATGCATGTCCCAGACATGTCTTACACT
24102536 AGCCCACAAT
Statistics
Matches: 106, Mismatches: 18, Indels: 3
0.83 0.14 0.02
Matches are distributed among these distances:
139 18 0.17
140 81 0.76
141 7 0.07
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.30
Consensus pattern (141 bp):
GCCGATGCCATGTCCTAGACACGGTCTTACACTAGCACACATCTCATGCCGATGCCATGTCCCAA
ACATGGTCTTACACTGACTATCATAATATAGCTGATGCATGTCCCAGACATGTCTTACACTGGCT
TACATCTCGAG
Found at i:24102517 original size:94 final size:92
Alignment explanation
Indices: 24102368--24102538 Score: 238
Period size: 94 Copynumber: 1.8 Consensus size: 92
24102358 TCTTATAGCT
* * *
24102368 GATGCATGTCCCAGACATGTCTTGCACTGGCTTACATCTCGAGGCCGATGCATGTCCTAGACATG
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATATCGAGGCCGATGCATGTCCCAGACATG
24102433 TCTTACACTAGCACCCGTCTCGATGCC
66 TCTTACACTAGCACCCGTCTCGATGCC
* **
24102460 GATGCTATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGTTGATGCATGTCCCAGA
1 GATGC-ATGTCCCAGACAT-GTCTTACACTGGCT-TACAT-ATCGAGGCCGATGCATGTCCCAGA
24102523 CATGTCTTACACTAGC
62 CATGTCTTACACTAGC
24102539 CCACAATAAC
Statistics
Matches: 69, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
92 5 0.07
93 13 0.19
94 49 0.71
95 2 0.03
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.28
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTACATATCGAGGCCGATGCATGTCCCAGACATG
TCTTACACTAGCACCCGTCTCGATGCC
Found at i:24104652 original size:17 final size:17
Alignment explanation
Indices: 24104630--24104662 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
24104620 TTTTTATCAT
24104630 TTATCATTTATCGGGCA
1 TTATCATTTATCGGGCA
24104647 TTATCATTTATCGGGC
1 TTATCATTTATCGGGC
24104663 TTTGTCAGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.21, C:0.18, G:0.18, T:0.42
Consensus pattern (17 bp):
TTATCATTTATCGGGCA
Found at i:24107270 original size:31 final size:31
Alignment explanation
Indices: 24107232--24107295 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
24107222 TTTAACTTAA
24107232 CTTTAAAATCAGTTAATTTAACTCGAAAAGT
1 CTTTAAAATCAGTTAATTTAACTCGAAAAGT
24107263 CTTTAAAATCAGTTAATTTAACTCGAAAAGT
1 CTTTAAAATCAGTTAATTTAACTCGAAAAGT
24107294 CT
1 CT
24107296 ATCTAGTAGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.41, C:0.14, G:0.09, T:0.36
Consensus pattern (31 bp):
CTTTAAAATCAGTTAATTTAACTCGAAAAGT
Found at i:24107637 original size:31 final size:29
Alignment explanation
Indices: 24107564--24107649 Score: 70
Period size: 29 Copynumber: 2.9 Consensus size: 29
24107554 TAAGAATTGA
* * *
24107564 ATCAAACCAAAATTTCATGTATAAAATTAT
1 ATCAAACTAAAATTT-ATATATATAATTAT
*
24107594 A-CAAAATCAAAATTTATATATATAATTGCAT
1 ATCAAACT-AAAATTTATATATATAATT--AT
*
24107625 ATCAAACTAAAA--TATATGTATAATT
1 ATCAAACTAAAATTTATATATATAATT
24107650 TTAAAATTTA
Statistics
Matches: 46, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
29 26 0.57
30 8 0.17
31 7 0.15
32 5 0.11
ACGTcount: A:0.51, C:0.10, G:0.03, T:0.35
Consensus pattern (29 bp):
ATCAAACTAAAATTTATATATATAATTAT
Found at i:24109617 original size:16 final size:16
Alignment explanation
Indices: 24109581--24109632 Score: 52
Period size: 16 Copynumber: 3.3 Consensus size: 16
24109571 AGAGTTAGGG
*
24109581 TATTTAATATTTTTAA
1 TATTTAAAATTTTTAA
*
24109597 -GTTTAAAATTTTTAA
1 TATTTAAAATTTTTAA
***
24109612 TATTTAGGGTTTTTAA
1 TATTTAAAATTTTTAA
24109628 TATTT
1 TATTT
24109633 TTAAATTTAA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
15 13 0.45
16 16 0.55
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.60
Consensus pattern (16 bp):
TATTTAAAATTTTTAA
Found at i:24109649 original size:25 final size:25
Alignment explanation
Indices: 24109598--24109649 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
24109588 TATTTTTAAG
*
24109598 TTTAAAATTTTTAATATTTAGGGTT
1 TTTAAAATTTTTAATATTTAGAGTT
*
24109623 TTTAATATTTTTAA-ATTTA-AGATT
1 TTTAAAATTTTTAATATTTAGAG-TT
24109647 TTT
1 TTT
24109650 GACTGAAATC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 1 0.04
24 10 0.42
25 13 0.54
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.60
Consensus pattern (25 bp):
TTTAAAATTTTTAATATTTAGAGTT
Found at i:24118010 original size:5 final size:5
Alignment explanation
Indices: 24117974--24118022 Score: 52
Period size: 5 Copynumber: 10.4 Consensus size: 5
24117964 GCAAATTAAG
*
24117974 AAAGA ACAG- AAAG- AAA-A AAAG- AAAGAA AAAGA AAAGA AAAGA AAAGA
1 AAAGA AAAGA AAAGA AAAGA AAAGA AAAG-A AAAGA AAAGA AAAGA AAAGA
24118021 AA
1 AA
24118023 GGGAGAAAGG
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
4 13 0.34
5 21 0.55
6 4 0.11
ACGTcount: A:0.80, C:0.02, G:0.18, T:0.00
Consensus pattern (5 bp):
AAAGA
Found at i:24118424 original size:24 final size:24
Alignment explanation
Indices: 24118395--24118448 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
24118385 AAATGTGAGA
*
24118395 ATAAAAATTAGTCTCGGTTTAAGG
1 ATAAAAATTAGTCTCGATTTAAGG
*
24118419 ATAAAAATTAGTCTCGATTTAGGG
1 ATAAAAATTAGTCTCGATTTAAGG
24118443 ACTAAA
1 A-TAAA
24118449 TTGGAATTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 23 0.85
25 4 0.15
ACGTcount: A:0.41, C:0.09, G:0.19, T:0.31
Consensus pattern (24 bp):
ATAAAAATTAGTCTCGATTTAAGG
Found at i:24122710 original size:15 final size:14
Alignment explanation
Indices: 24122683--24122726 Score: 52
Period size: 15 Copynumber: 3.0 Consensus size: 14
24122673 CTATTGCTTT
*
24122683 ATTCTGTTCTGTTC
1 ATTCTGCTCTGTTC
*
24122697 AGTTTTGCTCTGTTCC
1 A-TTCTGCTCTGTT-C
24122713 ATTCTGCTCTGTTC
1 ATTCTGCTCTGTTC
24122727 TGTCTTGTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
14 2 0.08
15 21 0.84
16 2 0.08
ACGTcount: A:0.07, C:0.25, G:0.16, T:0.52
Consensus pattern (14 bp):
ATTCTGCTCTGTTC
Found at i:24124753 original size:28 final size:28
Alignment explanation
Indices: 24124701--24124756 Score: 78
Period size: 27 Copynumber: 2.0 Consensus size: 28
24124691 CAGATATTTT
* *
24124701 TTAAAATTAAGAAAAATAACTAAAAAAA
1 TTAAAATTAAGAAAAAAAACCAAAAAAA
*
24124729 TTAAAATTAA-AAAAAAAACCCAAAAAA
1 TTAAAATTAAGAAAAAAAACCAAAAAAA
24124756 T
1 T
24124757 ATCAAGAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
27 15 0.60
28 10 0.40
ACGTcount: A:0.71, C:0.07, G:0.02, T:0.20
Consensus pattern (28 bp):
TTAAAATTAAGAAAAAAAACCAAAAAAA
Found at i:24124925 original size:34 final size:35
Alignment explanation
Indices: 24124860--24124925 Score: 82
Period size: 34 Copynumber: 1.9 Consensus size: 35
24124850 AATTTTATTA
* * *
24124860 AAAAATTATAAACTTATTAAAATTTATAAAAATCC
1 AAAAATGATAAACTTATTAAAATTAAAAAAAATCC
24124895 AAAAATGA-AAACTT-TTAGAAATTAAAAAAAA
1 AAAAATGATAAACTTATTA-AAATTAAAAAAAA
24124926 ATAATTATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
33 3 0.11
34 17 0.63
35 7 0.26
ACGTcount: A:0.62, C:0.06, G:0.03, T:0.29
Consensus pattern (35 bp):
AAAAATGATAAACTTATTAAAATTAAAAAAAATCC
Found at i:24128226 original size:29 final size:30
Alignment explanation
Indices: 24128179--24128240 Score: 108
Period size: 29 Copynumber: 2.1 Consensus size: 30
24128169 ACTTAACAAG
24128179 CAAATGCCTCTAAAATAATAAAAAAATTAA
1 CAAATGCCTCTAAAATAATAAAAAAATTAA
*
24128209 CAAATGCCT-TAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAAAAAAATTAA
24128238 CAA
1 CAA
24128241 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 22 0.71
30 9 0.29
ACGTcount: A:0.60, C:0.15, G:0.03, T:0.23
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAAAAAAATTAA
Found at i:24128290 original size:14 final size:14
Alignment explanation
Indices: 24128271--24128301 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
24128261 ATCCAAACAA
24128271 TAACAACAAAATAG
1 TAACAACAAAATAG
*
24128285 TAACAACATAATAG
1 TAACAACAAAATAG
24128299 TAA
1 TAA
24128302 AATGGTAGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.61, C:0.13, G:0.06, T:0.19
Consensus pattern (14 bp):
TAACAACAAAATAG
Found at i:24128766 original size:42 final size:42
Alignment explanation
Indices: 24128705--24128809 Score: 131
Period size: 42 Copynumber: 2.5 Consensus size: 42
24128695 AGTTACATAA
* * * *
24128705 CTTGGACACATGCCTATGTCCTTGCCCATGTGGCTCACACGG
1 CTTGGGCACATGCCCATGTCCTTGCCCATGTAGCTCACACAG
* *
24128747 CTTGGGCACATGCCCATGTCCTTGCCCGTGTAGCTTACACAG
1 CTTGGGCACATGCCCATGTCCTTGCCCATGTAGCTCACACAG
*
24128789 -TCTGGGCACACGCCCATGTCC
1 CT-TGGGCACATGCCCATGTCC
24128810 CTGGCCGTGT
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
41 1 0.02
42 54 0.98
ACGTcount: A:0.16, C:0.35, G:0.24, T:0.25
Consensus pattern (42 bp):
CTTGGGCACATGCCCATGTCCTTGCCCATGTAGCTCACACAG
Found at i:24134201 original size:22 final size:22
Alignment explanation
Indices: 24134175--24134217 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
24134165 TCTTCCTATT
24134175 TTGCTACCATATTACTATTATA
1 TTGCTACCATATTACTATTATA
* * *
24134197 TTGCTACTATTTTATTATTAT
1 TTGCTACCATATTACTATTAT
24134218 TGTTTAGATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.28, C:0.14, G:0.05, T:0.53
Consensus pattern (22 bp):
TTGCTACCATATTACTATTATA
Found at i:24134258 original size:12 final size:11
Alignment explanation
Indices: 24134239--24134269 Score: 53
Period size: 12 Copynumber: 2.7 Consensus size: 11
24134229 TGTATAAAAC
24134239 TTATTTTATTA
1 TTATTTTATTA
24134250 TTAATTTTATTA
1 TT-ATTTTATTA
24134262 TTATTTTA
1 TTATTTTA
24134270 AAAGCATTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 8 0.42
12 11 0.58
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (11 bp):
TTATTTTATTA
Found at i:24134286 original size:30 final size:30
Alignment explanation
Indices: 24134250--24134311 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
24134240 TATTTTATTA
24134250 TTAATTTTATTATTATTTTAAAAGCATTTG
1 TTAATTTTATTATTATTTTAAAAGCATTTG
* * *
24134280 TTAATTTTGTTATTATTTTAGAAGTATTTG
1 TTAATTTTATTATTATTTTAAAAGCATTTG
24134310 TT
1 TT
24134312 TGTTAAGTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.29, C:0.02, G:0.10, T:0.60
Consensus pattern (30 bp):
TTAATTTTATTATTATTTTAAAAGCATTTG
Found at i:24135964 original size:74 final size:74
Alignment explanation
Indices: 24135881--24136032 Score: 286
Period size: 74 Copynumber: 2.1 Consensus size: 74
24135871 AAATATAGAT
* *
24135881 AAAAGAATAACACAACTTGATATGATCACAGATGGAGAATGTCCAAATATAGAAACTTAAATTAA
1 AAAAGAATAACACAACTTGATATGATCAAAGATGGAGAATGTCCAAATATAAAAACTTAAATTAA
24135946 AGAATAAAA
66 AGAATAAAA
24135955 AAAAGAATAACACAACTTGATATGATCAAAGATGGAGAATGTCCAAATATAAAAACTTAAATTAA
1 AAAAGAATAACACAACTTGATATGATCAAAGATGGAGAATGTCCAAATATAAAAACTTAAATTAA
24136020 AGAATAAAA
66 AGAATAAAA
24136029 AAAA
1 AAAA
24136033 AGGAGAGGAA
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
74 76 1.00
ACGTcount: A:0.57, C:0.10, G:0.12, T:0.21
Consensus pattern (74 bp):
AAAAGAATAACACAACTTGATATGATCAAAGATGGAGAATGTCCAAATATAAAAACTTAAATTAA
AGAATAAAA
Found at i:24138630 original size:15 final size:15
Alignment explanation
Indices: 24138610--24138656 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
24138600 CTAAGCCTTC
24138610 TACTATATTATATAA
1 TACTATATTATATAA
* *
24138625 TACTATATCATATCA
1 TACTATATTATATAA
*
24138640 TA-TATAATATATTAA
1 TACTATATTATA-TAA
24138655 TA
1 TA
24138657 GTTTACATAC
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
14 7 0.27
15 19 0.73
ACGTcount: A:0.47, C:0.09, G:0.00, T:0.45
Consensus pattern (15 bp):
TACTATATTATATAA
Found at i:24138824 original size:6 final size:6
Alignment explanation
Indices: 24138815--24138842 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
24138805 CCAATACCAA
24138815 CCAAAC CCAAAC CCAAAC CCAAAC CCAA
1 CCAAAC CCAAAC CCAAAC CCAAAC CCAA
24138843 GTATTATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (6 bp):
CCAAAC
Found at i:24139102 original size:8 final size:8
Alignment explanation
Indices: 24139089--24139138 Score: 50
Period size: 8 Copynumber: 6.5 Consensus size: 8
24139079 ATAACACTAT
24139089 TTATTATA
1 TTATTATA
*
24139097 TTATTAAA
1 TTATTATA
*
24139105 TTAATATA
1 TTATTATA
* *
24139113 TTATCACA
1 TTATTATA
24139121 TTA-TATA
1 TTATTATA
24139128 TT-TTATA
1 TTATTATA
24139135 TTAT
1 TTAT
24139139 CTTTAAATTT
Statistics
Matches: 32, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
7 10 0.31
8 22 0.69
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (8 bp):
TTATTATA
Found at i:24139255 original size:15 final size:15
Alignment explanation
Indices: 24139235--24139276 Score: 50
Period size: 17 Copynumber: 2.7 Consensus size: 15
24139225 ATATTCAACT
24139235 AATATTTATAAAAAA
1 AATATTTATAAAAAA
*
24139250 AATATTTCACTTAAAAA
1 AATATTT-A-TAAAAAA
24139267 AATA-TTATAA
1 AATATTTATAA
24139277 TTACTTTTGC
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
14 2 0.09
15 8 0.35
16 3 0.13
17 10 0.43
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.36
Consensus pattern (15 bp):
AATATTTATAAAAAA
Found at i:24141072 original size:40 final size:40
Alignment explanation
Indices: 24141028--24141108 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
24141018 GGGTAGAAAG
*
24141028 TAAGTTACACCATGGTTGGTTTGTGGTGATTTTAATGAGA
1 TAAGTTACACCATAGTTGGTTTGTGGTGATTTTAATGAGA
24141068 TAAGTTACACCATAGTTGGTTTGTGGTGATTTTAATGAGA
1 TAAGTTACACCATAGTTGGTTTGTGGTGATTTTAATGAGA
24141108 T
1 T
24141109 TTTATTTTCT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.26, C:0.07, G:0.26, T:0.41
Consensus pattern (40 bp):
TAAGTTACACCATAGTTGGTTTGTGGTGATTTTAATGAGA
Found at i:24155235 original size:16 final size:17
Alignment explanation
Indices: 24155214--24155249 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
24155204 TGCTAGAAAG
*
24155214 TACAAC-ATTAATTTCC
1 TACAACAATTAATTCCC
24155230 TACAACAATTAATTCCC
1 TACAACAATTAATTCCC
24155247 TAC
1 TAC
24155250 TTAAAGCTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 6 0.33
17 12 0.67
ACGTcount: A:0.39, C:0.28, G:0.00, T:0.33
Consensus pattern (17 bp):
TACAACAATTAATTCCC
Found at i:24159972 original size:46 final size:45
Alignment explanation
Indices: 24159922--24160041 Score: 140
Period size: 46 Copynumber: 2.6 Consensus size: 45
24159912 GATGAGAGCT
*
24159922 AGTGTAAGACATGT-TAGGGACATGCATCGACCT-CGAGATGTAAGCC
1 AGTGTAAGACATGTCTAGGGACATGAATCG-CCTACGAGATGT--GCC
* *
24159968 AGTGTAAGACATGTCTA-GGACATGAATCGGCTACGAGATGTGTC
1 AGTGTAAGACATGTCTAGGGACATGAATCGCCTACGAGATGTGCC
24160012 AGTGTAAGACCATGTCT-GGGACATTGAATC
1 AGTGTAAGA-CATGTCTAGGGACA-TGAATC
24160042 AGCACGAATA
Statistics
Matches: 66, Mismatches: 3, Indels: 10
0.84 0.04 0.13
Matches are distributed among these distances:
44 11 0.17
45 14 0.21
46 39 0.59
47 2 0.03
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACATGTCTAGGGACATGAATCGCCTACGAGATGTGCC
Found at i:24170712 original size:93 final size:93
Alignment explanation
Indices: 24170600--24170770 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
24170590 GCCCCTAAGT
* *
24170600 GAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
24170664 ACGAGTTCGGATGCCTAGTTACATTTCAC
65 ACGAGTTCGGATGCCTAGTTACATTTCAC
*
24170693 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
24170758 CGAGTTCGGATGC
66 CGAGTTCGGATGC
24170771 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:24170767 original size:46 final size:46
Alignment explanation
Indices: 24170595--24170767 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
24170585 AACCCGCCCC
* * *
24170595 TAAGTGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTTGCATCCA
* * *
24170641 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
24170689 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
24170734 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
24170768 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 13, Indels: 16
0.79 0.10 0.12
Matches are distributed among these distances:
43 6 0.06
44 1 0.01
45 4 0.04
46 59 0.56
47 29 0.27
48 2 0.02
49 1 0.01
50 4 0.04
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:24193080 original size:45 final size:45
Alignment explanation
Indices: 24192973--24193189 Score: 300
Period size: 45 Copynumber: 4.9 Consensus size: 45
24192963 CCGAATTCAT
* * * *
24192973 TCACCGACATT-TCGCCTGCTAGGCTC-GAGGCCCG-ATA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATC
*
24193015 TCACTGGCATTATAGCCTGCTAGGCTCGAAA-GCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAGTATC
*
24193060 TCACCGGCATTGTAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* *
24193105 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCTCGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
24193150 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCAAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
24193190 ATCAAATCAA
Statistics
Matches: 157, Mismatches: 12, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
42 9 0.06
43 14 0.09
44 8 0.05
45 125 0.80
46 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:24196878 original size:27 final size:27
Alignment explanation
Indices: 24196847--24197024 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
24196837 TAAATTGTAC
24196847 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
24196874 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
24196900 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
24196928 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
24196956 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
24196983 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
24197010 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
24197025 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:24196961 original size:82 final size:81
Alignment explanation
Indices: 24196848--24197003 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
24196838 AAATTGTACA
* *
24196848 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
24196912 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
24196929 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
24196994 TGCGAGTTGA
65 TGCGAATTGA
24197004 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:24197015 original size:82 final size:81
Alignment explanation
Indices: 24196844--24197024 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
24196834 GATTAAATTG
* *
24196844 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
24196909 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
24196925 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
24196989 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
24197007 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
24197025 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:24204944 original size:27 final size:27
Alignment explanation
Indices: 24204913--24205090 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
24204903 TAAATTGTAC
24204913 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
24204940 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
24204966 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
24204994 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
24205022 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
24205049 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
24205076 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
24205091 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:24205027 original size:82 final size:81
Alignment explanation
Indices: 24204914--24205069 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
24204904 AAATTGTACA
* *
24204914 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
24204978 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
24204995 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
24205060 TGCGAGTTGA
65 TGCGAATTGA
24205070 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:24205081 original size:82 final size:81
Alignment explanation
Indices: 24204910--24205090 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
24204900 GATTAAATTG
* *
24204910 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
24204975 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
24204991 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
24205055 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
24205073 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
24205091 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:24213012 original size:27 final size:27
Alignment explanation
Indices: 24212974--24213124 Score: 160
Period size: 27 Copynumber: 5.6 Consensus size: 27
24212964 TAAATTGTAC
* *
24212974 AGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
24213000 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
24213028 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
24213056 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
24213083 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
24213110 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
24213125 GACTCAATAT
Statistics
Matches: 108, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
26 1 0.01
27 84 0.78
28 23 0.21
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:24213071 original size:55 final size:54
Alignment explanation
Indices: 24212973--24213124 Score: 171
Period size: 55 Copynumber: 2.8 Consensus size: 54
24212963 TTAAATTGTA
** *
24212973 CAGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTGTGCGAATTGACCATG
1 CAGCACTAAGTGTGCGAGTTGAATATGTA-GCACTAAGTGTGCGAATTGACCACG
* * * **
24213027 CGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG
1 CAGCACTAAGTGTGCGAG-TTGAATATGTAGCACTAAGTGTGCGAATTGACCACG
* * * *
24213082 TAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 CAGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCG
24213125 GACTCAATAT
Statistics
Matches: 83, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
54 38 0.46
55 44 0.53
56 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (54 bp):
CAGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAATTGACCACG
Found at i:24213115 original size:82 final size:82
Alignment explanation
Indices: 24212974--24213124 Score: 187
Period size: 82 Copynumber: 1.8 Consensus size: 82
24212964 TAAATTGTAC
* * *
24212974 AGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTG
1 AGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGTGCGAATTGACCATACAGCACTAAGTG
24213039 TGCGAGTTTGACTATGT
66 TGCGAGTTTGACTATGT
** * * ** * *
24213056 AGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGT
1 AGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGTGTGCGAATTGACCATACAGCACTAAGT
24213120 GTGCG
65 GTGCG
24213125 GACTCAATAT
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
81 1 0.02
82 56 0.98
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (82 bp):
AGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGTGCGAATTGACCATACAGCACTAAGTG
TGCGAGTTTGACTATGT
Found at i:24216722 original size:8 final size:8
Alignment explanation
Indices: 24216709--24216740 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
24216699 CTAGATCGGC
24216709 AAAAGCCG
1 AAAAGCCG
24216717 AAAAGCCG
1 AAAAGCCG
*
24216725 AAATGCCG
1 AAAAGCCG
24216733 AAAAGCCG
1 AAAAGCCG
24216741 GTATTTGGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.47, C:0.25, G:0.25, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:24217019 original size:28 final size:28
Alignment explanation
Indices: 24216987--24217051 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
24216977 ATTTACTAGA
*
24216987 ATACCCCTATGTATGCAAAATTACCATC
1 ATACCCCTATGTATGCAAAATGACCATC
* * *
24217015 ATACCCCTATGTGTGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATC
24217043 ATACCCCTA
1 ATACCCCTA
24217052 GGGTTAATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.32, C:0.29, G:0.09, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATC
Found at i:24217257 original size:29 final size:28
Alignment explanation
Indices: 24217167--24217257 Score: 67
Period size: 27 Copynumber: 3.2 Consensus size: 28
24217157 CTAGTGGCTA
* * * * *
24217167 TGCCACAAATTACCTATTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** * *
24217195 TGCCAC-GTATATTTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
24217222 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
24217251 TGTCACA
1 TGCCACA
24217258 TTTTCTGTAT
Statistics
Matches: 48, Mismatches: 13, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
27 20 0.42
28 13 0.27
29 15 0.31
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:24224880 original size:28 final size:28
Alignment explanation
Indices: 24224848--24224912 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
24224838 ATTTACTAGA
*
24224848 ATACCCCTATGTATGCAAAATTACCATC
1 ATACCCCTATGTATGCAAAATGACCATC
* * *
24224876 ATACCCCTATGTGTGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATC
24224904 ATACCCCTA
1 ATACCCCTA
24224913 GGGTTAATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.32, C:0.29, G:0.09, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATC
Found at i:24225076 original size:27 final size:28
Alignment explanation
Indices: 24225018--24225107 Score: 112
Period size: 27 Copynumber: 3.2 Consensus size: 28
24225008 AGGAAGCGTC
*
24225018 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* **
24225046 CTGGTGGCCCTGCCAC-GTATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
24225073 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
24225102 CTGGTG
1 CTGGTG
24225108 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:24225118 original size:29 final size:28
Alignment explanation
Indices: 24225028--24225118 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
24225018 CTGGTGGCTA
* * *
24225028 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
24225056 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
24225083 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
24225112 TGTCACA
1 TGCCACA
24225119 TTTTCTGTAT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
27 23 0.44
28 14 0.27
29 15 0.29
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:24225126 original size:55 final size:56
Alignment explanation
Indices: 24225018--24225132 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
24225008 AGGAAGCGTC
* * *
24225018 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACGTATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
24225073 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
24225129 CTGG
1 CTGG
24225133 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.59
56 20 0.39
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:24235433 original size:246 final size:246
Alignment explanation
Indices: 24234999--24235461 Score: 908
Period size: 246 Copynumber: 1.9 Consensus size: 246
24234989 TAAAATGCCC
24234999 TAAATGTGTGTTTTTGGATTGATTTGAATGAATGTGAGTTTGAATAAGTTAAATTTGAATTTATA
1 TAAATGTGTGTTTTTGGATTGATTTGAATGAATGTGAGTTTGAATAAGTTAAATTTGAATTTATA
*
24235064 TAGATCAAGAATTTGAAAAAGTAGAATTAGATCGGGGGAAAGTTGAAAGTCGTTGAGTACCTGAT
66 TAGATCAAGAATTTGAAAAAGTAGAATTAGATCGGGGGAAAGTTGAAAGTCGTCGAGTACCTGAT
24235129 TCCATCTATCCGAATTAGTACGAGGTACGCCTATATACAAATAAATGTATTTGAAATGGTTTATT
131 TCCATCTATCCGAATTAGTACGAGGTACGCCTATATACAAATAAATGTATTTGAAATGGTTTATT
*
24235194 TGTGCTTATATGCTATTGAATAATGATAAATGGCTTTATATTGAATAATGA
196 TATGCTTATATGCTATTGAATAATGATAAATGGCTTTATATTGAATAATGA
24235245 TAAATGTGTGTTTTTGGATTGATTTGAATGAATGTGAGTTTGAATAAGTTAAATTTGAATTTATA
1 TAAATGTGTGTTTTTGGATTGATTTGAATGAATGTGAGTTTGAATAAGTTAAATTTGAATTTATA
24235310 TAGATCAAGAATTTGAAAAAGTAGAATTAGATCGGGGGAAAGTTGAAAGTCGTCGAGTACCTGAT
66 TAGATCAAGAATTTGAAAAAGTAGAATTAGATCGGGGGAAAGTTGAAAGTCGTCGAGTACCTGAT
24235375 TCCATCTATCCGAATTAGTACGAGGTACGCCTATATACAAATAAATGTATTTGAAATGGTTTATT
131 TCCATCTATCCGAATTAGTACGAGGTACGCCTATATACAAATAAATGTATTTGAAATGGTTTATT
24235440 TATGCTTATATGCTATTGAATA
196 TATGCTTATATGCTATTGAATA
24235462 TGAGATATCT
Statistics
Matches: 215, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
246 215 1.00
ACGTcount: A:0.35, C:0.08, G:0.21, T:0.37
Consensus pattern (246 bp):
TAAATGTGTGTTTTTGGATTGATTTGAATGAATGTGAGTTTGAATAAGTTAAATTTGAATTTATA
TAGATCAAGAATTTGAAAAAGTAGAATTAGATCGGGGGAAAGTTGAAAGTCGTCGAGTACCTGAT
TCCATCTATCCGAATTAGTACGAGGTACGCCTATATACAAATAAATGTATTTGAAATGGTTTATT
TATGCTTATATGCTATTGAATAATGATAAATGGCTTTATATTGAATAATGA
Found at i:24237230 original size:27 final size:27
Alignment explanation
Indices: 24237200--24237286 Score: 88
Period size: 27 Copynumber: 3.2 Consensus size: 27
24237190 GATTCAAAAG
24237200 TATATATTAAGTCCGCACACTCAGTGC
1 TATATATTAAGTCCGCACACTCAGTGC
* *
24237227 TATATAATCAACT-CGCACACTCAGTGC
1 TATAT-ATTAAGTCCGCACACTCAGTGC
* * * *
24237254 TATATAAT-CGACTCGCACACTTAGTGC
1 TATATATTAAGTC-CGCACACTCAGTGC
24237281 TATATA
1 TATATA
24237287 ATCAAACTCG
Statistics
Matches: 49, Mismatches: 8, Indels: 6
0.78 0.13 0.10
Matches are distributed among these distances:
26 1 0.02
27 43 0.88
28 5 0.10
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.30
Consensus pattern (27 bp):
TATATATTAAGTCCGCACACTCAGTGC
Found at i:24237287 original size:27 final size:27
Alignment explanation
Indices: 24237213--24237309 Score: 158
Period size: 27 Copynumber: 3.6 Consensus size: 27
24237203 ATATTAAGTC
24237213 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
24237240 CGCACACTCAGTGCTATATAATCGACT
1 CGCACACTCAGTGCTATATAATCAACT
*
24237267 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
24237295 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
24237310 GTACAATTTA
Statistics
Matches: 66, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
27 48 0.73
28 18 0.27
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:24237332 original size:29 final size:28
Alignment explanation
Indices: 24237212--24237337 Score: 130
Period size: 27 Copynumber: 4.5 Consensus size: 28
24237202 TATATTAAGT
* *
24237212 CCGCACACTCAGTGCTATATAATC-AAC
1 CCGCACACTTAGTGCTATACAATCAAAC
* * * *
24237239 TCGCACACTCAGTGCTATATAATC-GAC
1 CCGCACACTTAGTGCTATACAATCAAAC
* *
24237266 TCGCACACTTAGTGCTATATAATCAAAC
1 CCGCACACTTAGTGCTATACAATCAAAC
* * *
24237294 TCGCACACTTAGTGCTGTACAATTTAAAC
1 CCGCACACTTAGTGCTATACAA-TCAAAC
24237323 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
24237338 CAATCTCATG
Statistics
Matches: 89, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
27 48 0.54
28 22 0.25
29 19 0.21
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.26
Consensus pattern (28 bp):
CCGCACACTTAGTGCTATACAATCAAAC
Found at i:24237801 original size:12 final size:12
Alignment explanation
Indices: 24237784--24237810 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
24237774 TGGGCATACT
24237784 TATGTATATATA
1 TATGTATATATA
24237796 TATGTATATATA
1 TATGTATATATA
24237808 TAT
1 TAT
24237811 ATACTTCGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (12 bp):
TATGTATATATA
Found at i:24244587 original size:44 final size:44
Alignment explanation
Indices: 24244504--24244587 Score: 114
Period size: 44 Copynumber: 1.9 Consensus size: 44
24244494 CATGTATCGT
* * * * *
24244504 ATCCATTATGAACTCGGACCAATTCAATGAGTTCGGATGCTCGC
1 ATCCATAATGAACTCGGACCAACTCAAAGAGCTCAGATGCTCGC
*
24244548 ATCCATAATGAACTCTGACCAACTCAAAGAGCTCAGATGC
1 ATCCATAATGAACTCGGACCAACTCAAAGAGCTCAGATGC
24244588 CTCATATATA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 34 1.00
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (44 bp):
ATCCATAATGAACTCGGACCAACTCAAAGAGCTCAGATGCTCGC
Found at i:24263184 original size:40 final size:40
Alignment explanation
Indices: 24263101--24263363 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
24263091 TTGAATGCTG
* * * * * *
24263101 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * *
24263141 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATATTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
*
24263181 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
24263221 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
24263261 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
24263301 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
24263340 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
24263364 TGAACGAGGA
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.17
40 157 0.79
41 8 0.04
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:24263383 original size:79 final size:80
Alignment explanation
Indices: 24263137--24263398 Score: 253
Period size: 80 Copynumber: 3.3 Consensus size: 80
24263127 GCTAAGTGAA
* * * * * * *
24263137 TATATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATATTAAATCCGGGTTAAGTCCCGAAGG
1 TATATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** * *
24263201 CATTCGTGCGAGTTA-T
65 CATTCGAACGAG-GAGC
* * *
24263217 TATATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGC
1 TATATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
** ** *
24263282 ATTCGTGCGAGTTGT
66 ATTCGAACGAGGAGC
* * * *
24263297 TAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGC
1 TATATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
*
24263361 ATTTGAACGAGGAGC
66 ATTCGAACGAGGAGC
*
24263376 TATATCC-GGTTAAATCCCGAAGG
1 TATATCCGGGTTAAGTCCCGAAGG
24263399 TACGTGATTT
Statistics
Matches: 159, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.30
80 97 0.61
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (80 bp):
TATATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
ATTCGAACGAGGAGC
Found at i:24271056 original size:39 final size:40
Alignment explanation
Indices: 24270812--24271074 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
24270802 TTGAATGCTG
* * * * * *
24270812 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * *
24270852 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATATTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
24270892 TACGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
24270932 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
24270972 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
24271012 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
24271051 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
24271075 TGAATGAGGA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 35 0.18
40 155 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:24271094 original size:79 final size:80
Alignment explanation
Indices: 24270848--24271109 Score: 237
Period size: 80 Copynumber: 3.3 Consensus size: 80
24270838 GCTAAGTGAA
* * * * * *
24270848 TATATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATATTAAATA-CGGGTTAAGTCCCGAAG
1 TATATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA-ACCGGGCTAAGTCCCGAAG
** * *
24270911 GCATTCGTGCGAGTTA-T
64 GCATTCGAACGAG-GAGC
* * *
24270928 TATATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGC
1 TATATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
** ** *
24270993 ATTCGTGCGAGTTGT
66 ATTCGAACGAGGAGC
* * * *
24271008 TAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGC
1 TATATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
* *
24271072 ATTTGAATGAGGAGC
66 ATTCGAACGAGGAGC
*
24271087 TATATCC-GGTTAAATCCCGAAGG
1 TATATCCGGGTTAAGTCCCGAAGG
24271110 TACGTGATTT
Statistics
Matches: 156, Mismatches: 23, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
78 14 0.09
79 47 0.30
80 95 0.61
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.27
Consensus pattern (80 bp):
TATATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
ATTCGAACGAGGAGC
Found at i:24278552 original size:48 final size:43
Alignment explanation
Indices: 24278500--24278697 Score: 172
Period size: 42 Copynumber: 4.6 Consensus size: 43
24278490 TGATAGCCAG
* *
24278500 TGTAAGACCATATCTAGGATATGGTGTCAGCCTCGGTATGTGATTTCA
1 TGTAAGACCATATCTGGGATATGG-G-CA---TCGATATGTGATTTCA
*
24278548 TGTAAGACCATATCTGGGATAT-GGCATTGATATGTGATTTCA
1 TGTAAGACCATATCTGGGATATGGGCATCGATATGTGATTTCA
* * * *
24278590 TGTAAGACTATATCTGGGATAT-GGCATTGATATGAGATTTCG
1 TGTAAGACCATATCTGGGATATGGGCATCGATATGTGATTTCA
* * * * *
24278632 TGTAAGACCATGTTTGGGACAT-GGCATCG--ATGTGAAGTCTCG
1 TGTAAGACCATATCTGGGATATGGGCATCGATATGTG-A-TTTCA
* *
24278674 TGTAAGACCATGTCTGGGACATGG
1 TGTAAGACCATATCTGGGATATGG
24278698 CTTTGGATTT
Statistics
Matches: 133, Mismatches: 14, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
40 4 0.03
41 1 0.01
42 102 0.77
43 1 0.01
45 2 0.02
46 1 0.01
47 1 0.01
48 21 0.16
ACGTcount: A:0.26, C:0.14, G:0.27, T:0.32
Consensus pattern (43 bp):
TGTAAGACCATATCTGGGATATGGGCATCGATATGTGATTTCA
Found at i:24278595 original size:42 final size:42
Alignment explanation
Indices: 24278536--24278698 Score: 195
Period size: 42 Copynumber: 3.9 Consensus size: 42
24278526 TCAGCCTCGG
*
24278536 TATGTGATTTCATGTAAGACCATATCTGGGATATGGCATTGA
1 TATGTGATTTCATGTAAGACCATATCTGGGACATGGCATTGA
* *
24278578 TATGTGATTTCATGTAAGACTATATCTGGGATATGGCATTGA
1 TATGTGATTTCATGTAAGACCATATCTGGGACATGGCATTGA
* * * * *
24278620 TATGAGATTTCGTGTAAGACCATGTTTGGGACATGGCATCG-
1 TATGTGATTTCATGTAAGACCATATCTGGGACATGGCATTGA
* * *
24278661 -ATGTGAAGTCTCGTGTAAGACCATGTCTGGGACATGGC
1 TATGTG-A-TTTCATGTAAGACCATATCTGGGACATGGC
24278699 TTTGGATTTC
Statistics
Matches: 108, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
40 4 0.04
41 1 0.01
42 103 0.95
ACGTcount: A:0.26, C:0.13, G:0.27, T:0.33
Consensus pattern (42 bp):
TATGTGATTTCATGTAAGACCATATCTGGGACATGGCATTGA
Found at i:24282999 original size:39 final size:40
Alignment explanation
Indices: 24282795--24283017 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
24282785 TTGAATGCTG
* * * * * *
24282795 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
24282835 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
24282875 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
24282915 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
24282955 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
24282994 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
24283018 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 35 0.22
40 118 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:24283037 original size:79 final size:80
Alignment explanation
Indices: 24282870--24283052 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
24282860 GTGCGAGATA
* * *
24282870 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
24282935 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
24282950 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
24283014 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
24283029 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
24283053 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:24285553 original size:45 final size:46
Alignment explanation
Indices: 24285476--24285602 Score: 132
Period size: 45 Copynumber: 2.7 Consensus size: 46
24285466 ATATCAATTC
* * * *
24285476 ATAAGAGCTTACTGTTTTCAGCTCATTGGAGCTTATC-GTTTTAGCTCG
1 ATAA-AGCTTACT-ATTTCAGCTCAATAGAGCTTA-CAGTTTTAGCTCA
* ** **
24285524 TTTGAGCTTACTA-TTCAGCTTGATAGAGCTTACAGTTTTAGCTCA
1 ATAAAGCTTACTATTTCAGCTCAATAGAGCTTACAGTTTTAGCTCA
24285569 ATAAAGCTTACTATTTCAGCTCAATAGAGCTTAC
1 ATAAAGCTTACTATTTCAGCTCAATAGAGCTTAC
24285603 TATTCATCAG
Statistics
Matches: 63, Mismatches: 14, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
44 1 0.02
45 35 0.56
46 18 0.29
47 8 0.13
48 1 0.02
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (46 bp):
ATAAAGCTTACTATTTCAGCTCAATAGAGCTTACAGTTTTAGCTCA
Found at i:24285590 original size:68 final size:69
Alignment explanation
Indices: 24285479--24285608 Score: 158
Period size: 68 Copynumber: 1.9 Consensus size: 69
24285469 TCAATTCATA
* * ** ** *
24285479 AGAGCTTACTGTTTTCAGCTCATTGGAGCTTATCGTTTTAGCTCGTTTGAGCTTACTATTCAGCT
1 AGAGCTTACAGTTTTCAGCTCAATAAAGCTTATCGTTTTAGCTCAATAGAGCTTACTATTCAGCT
24285544 TGAT
66 TGAT
24285548 AGAGCTTACAGTTTT-AGCTCAATAAAGCTTA-C-TATTTCAGCTCAATAGAGCTTACTATTCA
1 AGAGCTTACAGTTTTCAGCTCAATAAAGCTTATCGT-TTT-AGCTCAATAGAGCTTACTATTCA
24285609 TCAGCTCAGG
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
66 1 0.02
67 4 0.08
68 33 0.63
69 14 0.27
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.38
Consensus pattern (69 bp):
AGAGCTTACAGTTTTCAGCTCAATAAAGCTTATCGTTTTAGCTCAATAGAGCTTACTATTCAGCT
TGAT
Found at i:24285604 original size:23 final size:23
Alignment explanation
Indices: 24285479--24285616 Score: 104
Period size: 23 Copynumber: 5.9 Consensus size: 23
24285469 TCAATTCATA
* *
24285479 AGAGCTTACTGTTTTCAGCTCATT
1 AGAGCTTACT-ATTTCAGCTCAAT
* **
24285503 GGAGCTTATCGT-TTT-AGCTCGTT
1 AGAGCTTA-C-TATTTCAGCTCAAT
* **
24285526 TGAGCTTACTA-TTCAGCTTGAT
1 AGAGCTTACTATTTCAGCTCAAT
*
24285548 AGAGCTTAC-AGTTTTAGCTCAAT
1 AGAGCTTACTA-TTTCAGCTCAAT
*
24285571 AAAGCTTACTATTTCAGCTCAAT
1 AGAGCTTACTATTTCAGCTCAAT
24285594 AGAGCTTACTATTCATCAGCTCA
1 AGAGCTTACTATT--TCAGCTCA
24285617 GGAGGATCTT
Statistics
Matches: 93, Mismatches: 12, Indels: 17
0.76 0.10 0.14
Matches are distributed among these distances:
21 4 0.04
22 15 0.16
23 53 0.57
24 11 0.12
25 9 0.10
26 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (23 bp):
AGAGCTTACTATTTCAGCTCAAT
Found at i:24286977 original size:43 final size:43
Alignment explanation
Indices: 24286928--24287009 Score: 146
Period size: 43 Copynumber: 1.9 Consensus size: 43
24286918 ATGGGCCTTT
*
24286928 CTACTAGCCGTGTGAGGCACACGGCCTGTTCACACAGGCATGG
1 CTACTAGCCGTGTGAGGCACACGGCCTGTTCACAAAGGCATGG
*
24286971 CTACTAGCTGTGTGAGGCACACGGCCTGTTCACAAAGGC
1 CTACTAGCCGTGTGAGGCACACGGCCTGTTCACAAAGGC
24287010 GTGTGACTCT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (43 bp):
CTACTAGCCGTGTGAGGCACACGGCCTGTTCACAAAGGCATGG
Found at i:24290009 original size:43 final size:43
Alignment explanation
Indices: 24289953--24290112 Score: 130
Period size: 43 Copynumber: 3.7 Consensus size: 43
24289943 ACATAGGATT
* *
24289953 TCGATATGTGATTTCGTGTAAGACCACGTCTGGGACATTGGCA
1 TCGATTTGTGATTTCATGTAAGACCACGTCTGGGACATTGGCA
* * * * * * *
24289996 TCGATTTGAGATTT-ACGTGCAGAACTATGTCTAGGACATTGACA
1 TCGATTTGTGATTTCATGT-AAG-ACCACGTCTGGGACATTGGCA
* * * *
24290040 TCG-TTTTTGATTTTATGTAAGACC-CTGTCTGGGATAGTGGCA
1 TCGATTTGTGATTTCATGTAAGACCAC-GTCTGGGACATTGGCA
*
24290082 TCGATATT-TGATTACATGTAAGACCACGTCT
1 TCGAT-TTGTGATTTCATGTAAGACCACGTCT
24290113 CGGATGTTGG
Statistics
Matches: 89, Mismatches: 21, Indels: 14
0.72 0.17 0.11
Matches are distributed among these distances:
42 19 0.21
43 44 0.49
44 26 0.29
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (43 bp):
TCGATTTGTGATTTCATGTAAGACCACGTCTGGGACATTGGCA
Found at i:24297023 original size:21 final size:21
Alignment explanation
Indices: 24296993--24297074 Score: 67
Period size: 21 Copynumber: 3.8 Consensus size: 21
24296983 TACATACATC
24296993 ATGAGCTCAGACCACAACTCA
1 ATGAGCTCAGACCACAACTCA
* *
24297014 ATGAGTTCAGATGTCACATACATC-
1 ATGAGCTCAGA--CCACA-AC-TCA
*
24297038 ATGAACTCAGACCACAACTCA
1 ATGAGCTCAGACCACAACTCA
* * *
24297059 ATAAGTTCAGATCACA
1 ATGAGCTCAGACCACA
24297075 TAGTTCCTAG
Statistics
Matches: 47, Mismatches: 9, Indels: 10
0.71 0.14 0.15
Matches are distributed among these distances:
20 2 0.04
21 24 0.51
22 4 0.09
23 4 0.09
24 11 0.23
25 2 0.04
ACGTcount: A:0.39, C:0.27, G:0.13, T:0.21
Consensus pattern (21 bp):
ATGAGCTCAGACCACAACTCA
Found at i:24297034 original size:45 final size:45
Alignment explanation
Indices: 24296984--24297070 Score: 156
Period size: 45 Copynumber: 1.9 Consensus size: 45
24296974 AACATGTGCT
* *
24296984 ACATACATCATGAGCTCAGACCACAACTCAATGAGTTCAGATGTC
1 ACATACATCATGAACTCAGACCACAACTCAATAAGTTCAGATGTC
24297029 ACATACATCATGAACTCAGACCACAACTCAATAAGTTCAGAT
1 ACATACATCATGAACTCAGACCACAACTCAATAAGTTCAGAT
24297071 CACATAGTTC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.39, C:0.26, G:0.13, T:0.22
Consensus pattern (45 bp):
ACATACATCATGAACTCAGACCACAACTCAATAAGTTCAGATGTC
Found at i:24299659 original size:30 final size:30
Alignment explanation
Indices: 24299625--24299685 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
24299615 TTCCCGAGCC
*
24299625 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATCCAAAAGTT
* * *
24299655 TAGGGGCAAAATTGTAATTTTCCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATCCAAAAGTT
24299685 T
1 T
24299686 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATCCAAAAGTT
Found at i:24300502 original size:64 final size:64
Alignment explanation
Indices: 24300421--24300604 Score: 169
Period size: 67 Copynumber: 2.8 Consensus size: 64
24300411 AGACATTATG
* *
24300421 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
24300485 ATGTAGCTAGGTCGCATGCGTGGCT-CCAGGTGAAGGACATCATGTAGACAAGAGAGCTACGAGA
1 ATGTAGCTAGGTCGCATGGGT-GATACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
24300549 TAA
62 TAA
* * * * *
24300552 AT-TGGCTAGGTCACATGGGTGGTATTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGATACT-ATGTGTACACCATGTAG-ACAAGAGAGC
24300605 CGAACTCTAT
Statistics
Matches: 95, Mismatches: 18, Indels: 15
0.74 0.14 0.12
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 23 0.24
65 4 0.04
66 17 0.18
67 32 0.34
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:24308052 original size:27 final size:26
Alignment explanation
Indices: 24308014--24308073 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
24308004 ACATATATAT
* *
24308014 ATATTTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
24308040 ATATCTGTATCTGGTGACTTTGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
24308067 ATATCTG
1 ATATCTG
24308074 GCAGCCTCGT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.38
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:24317314 original size:16 final size:16
Alignment explanation
Indices: 24317276--24317308 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
24317266 GAAAACATCT
*
24317276 CAAAAAATAAAGAATA
1 CAAAAAATAAAGAAAA
24317292 CAAAAAATAAAGAAAA
1 CAAAAAATAAAGAAAA
24317308 C
1 C
24317309 CCAAAACTCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.76, C:0.09, G:0.06, T:0.09
Consensus pattern (16 bp):
CAAAAAATAAAGAAAA
Found at i:24321685 original size:92 final size:93
Alignment explanation
Indices: 24321563--24321737 Score: 230
Period size: 94 Copynumber: 1.9 Consensus size: 93
24321553 CCTCTATACG
*
24321563 TGTCGATACCATGTCTAAGACATGGTCTTACACTAACACATC-T-CGTAGCCGATGCATGTCCTA
1 TGTCGATACCATGTCTAAGACATGGCCTTACACTAACAC-TCATACGTAGCCGATGCATGTCCTA
24321626 GACATGTCTTACACTAGCTCTTGTCTCAA
65 GACATGTCTTACACTAGCTCTTGTCTCAA
* * * * * *
24321655 TGTCGATGCCATGTCCT-AGACATGGCCTTACACTAGCTCTCATAATGTGGCCGATGCATGTCTT
1 TGTCGATACCATGT-CTAAGACATGGCCTTACACTAACACTCAT-ACGTAGCCGATGCATGTCCT
*
24321719 AGACATGTCTTACATTAGC
64 AGACATGTCTTACACTAGC
24321738 ACACAAATAA
Statistics
Matches: 71, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
91 2 0.03
92 33 0.46
93 2 0.03
94 34 0.48
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (93 bp):
TGTCGATACCATGTCTAAGACATGGCCTTACACTAACACTCATACGTAGCCGATGCATGTCCTAG
ACATGTCTTACACTAGCTCTTGTCTCAA
Found at i:24321715 original size:47 final size:47
Alignment explanation
Indices: 24321610--24321725 Score: 134
Period size: 47 Copynumber: 2.5 Consensus size: 47
24321600 ACATCTCGTA
*
24321610 GCCGATGCATGTCCTAGACAT-GTCTTACACTAGCTCTTGTCTCAATGT
1 GCCGATGCATGTCCTAGACATGGCCTTACACTAGCTC-T-TCTCAATGT
24321658 --CGATGCCATGTCCTAGACATGGCCTTACACTAGCTC-TCAT-AATGT
1 GCCGATG-CATGTCCTAGACATGGCCTTACACTAGCTCTTC-TCAATGT
*
24321703 GGCCGATGCATGTCTTAGACATG
1 -GCCGATGCATGTCCTAGACATG
24321726 TCTTACATTA
Statistics
Matches: 60, Mismatches: 2, Indels: 13
0.80 0.03 0.17
Matches are distributed among these distances:
45 7 0.12
46 6 0.10
47 28 0.47
48 19 0.32
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.30
Consensus pattern (47 bp):
GCCGATGCATGTCCTAGACATGGCCTTACACTAGCTCTTCTCAATGT
Found at i:24327430 original size:8 final size:8
Alignment explanation
Indices: 24327417--24327447 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
24327407 ATTAGGGATT
*
24327417 AAAATGTA
1 AAAATGTC
24327425 AAAATGTC
1 AAAATGTC
24327433 AAAATGTC
1 AAAATGTC
24327441 AAAATGT
1 AAAATGT
24327448 GAGGGTTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.55, C:0.06, G:0.13, T:0.26
Consensus pattern (8 bp):
AAAATGTC
Found at i:24327928 original size:42 final size:42
Alignment explanation
Indices: 24327822--24327978 Score: 156
Period size: 43 Copynumber: 3.7 Consensus size: 42
24327812 TGTGTTTCCG
* * * *
24327822 TGTAAGACCACATTTGGGATATTGGCATCG-ACTAATGATTTACC
1 TGTAAGACCACATCTGGGACATTGGCATCGTA-T-TTGATTT-CA
** *
24327866 TGTAAGACCATGTCTTGGACATTGGCATCGTATTTGATTTCA
1 TGTAAGACCACATCTGGGACATTGGCATCGTATTTGATTTCA
* *
24327908 TGTAAGACC-CTATCTGGGACAGTGGCATCGATATTTGATTACA
1 TGTAAGACCAC-ATCTGGGACATTGGCATCG-TATTTGATTTCA
* *
24327951 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACATCTGGGACATTGGCAT
24327979 TGTACAAGAT
Statistics
Matches: 94, Mismatches: 15, Indels: 9
0.80 0.13 0.08
Matches are distributed among these distances:
42 26 0.28
43 40 0.43
44 27 0.29
45 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (42 bp):
TGTAAGACCACATCTGGGACATTGGCATCGTATTTGATTTCA
Found at i:24328520 original size:23 final size:24
Alignment explanation
Indices: 24328494--24328539 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
24328484 AGCCATGTGA
*
24328494 TATGGCTTGGTTCTGGT-TATGAT
1 TATGGCTTGATTCTGGTATATGAT
* *
24328517 TATGGTTTGATTTTGGTATATGA
1 TATGGCTTGATTCTGGTATATGA
24328540 AATGTGATGC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.17, C:0.04, G:0.28, T:0.50
Consensus pattern (24 bp):
TATGGCTTGATTCTGGTATATGAT
Found at i:24330112 original size:58 final size:58
Alignment explanation
Indices: 24330022--24330137 Score: 205
Period size: 58 Copynumber: 2.0 Consensus size: 58
24330012 AACGAGACAC
* * *
24330022 CTAGGATTTCTTTCAAGTTGAATTTCGAAAGAAATGCATCAATTAGAGATTTATCGAT
1 CTAGGATTTCTTTCAAGATGAATTTCAAAAGAAATGCATCAATCAGAGATTTATCGAT
24330080 CTAGGATTTCTTTCAAGATGAATTTCAAAAGAAATGCATCAATCAGAGATTTATCGAT
1 CTAGGATTTCTTTCAAGATGAATTTCAAAAGAAATGCATCAATCAGAGATTTATCGAT
24330138 GAGAAACACA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
58 55 1.00
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.34
Consensus pattern (58 bp):
CTAGGATTTCTTTCAAGATGAATTTCAAAAGAAATGCATCAATCAGAGATTTATCGAT
Found at i:24332863 original size:15 final size:15
Alignment explanation
Indices: 24332843--24332872 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
24332833 TGATAATAAG
24332843 ATAAAAGTAGAACGA
1 ATAAAAGTAGAACGA
24332858 ATAAAAGTAGAACGA
1 ATAAAAGTAGAACGA
24332873 GCTCAGTGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.60, C:0.07, G:0.20, T:0.13
Consensus pattern (15 bp):
ATAAAAGTAGAACGA
Found at i:24335594 original size:42 final size:43
Alignment explanation
Indices: 24335533--24335632 Score: 125
Period size: 42 Copynumber: 2.3 Consensus size: 43
24335523 GACTGATGAT
*
24335533 TTACCTGTAAGACCATGTCT-AGGA-AATTGGCATCG-TATTCGA
1 TTACATGTAAGACCATGTCTGA-GACAA-TGGCATCGATATTCGA
* * *
24335575 TTTCATGTAAGACCCTGTCTGAGACAATGGCATCGATATTTGA
1 TTACATGTAAGACCATGTCTGAGACAATGGCATCGATATTCGA
24335618 TTACATGTAAGACCA
1 TTACATGTAAGACCA
24335633 CGTCCGGGAC
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
42 27 0.55
43 22 0.45
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (43 bp):
TTACATGTAAGACCATGTCTGAGACAATGGCATCGATATTCGA
Found at i:24335649 original size:43 final size:43
Alignment explanation
Indices: 24335494--24335650 Score: 133
Period size: 43 Copynumber: 3.7 Consensus size: 43
24335484 TGTGTTTCCG
* ** *
24335494 TGTAAGACCACATCTGGGATGTTGGCATCGACTGA--TGATTTACC
1 TGTAAGACCACGTCTGGGACATTGGCATCGA-T-ATTTGA-TTACA
* * * * *
24335538 TGTAAGACCATGTCTAGGAAATTGGCATCG-TATTCGATTTCA
1 TGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTACA
* *
24335580 TGTAAGACC-CTGTCTGAGACAATGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGACATTGGCATCGATATTTGATTACA
* *
24335623 TGTAAGACCACGTCCGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACATTGGCAT
24335651 TGTACGAGCT
Statistics
Matches: 89, Mismatches: 19, Indels: 11
0.75 0.16 0.09
Matches are distributed among these distances:
41 1 0.01
42 28 0.31
43 34 0.38
44 26 0.29
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTACA
Found at i:24336186 original size:23 final size:24
Alignment explanation
Indices: 24336160--24336204 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
24336150 AGCCATGTGA
*
24336160 TATGGCTTGGTTTTGGT-TATGAT
1 TATGGCTTGATTTTGGTATATGAT
*
24336183 TATGGTTTGATTTTGGTATATG
1 TATGGCTTGATTTTGGTATATG
24336205 GAATGTGATG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 15 0.79
24 4 0.21
ACGTcount: A:0.16, C:0.02, G:0.29, T:0.53
Consensus pattern (24 bp):
TATGGCTTGATTTTGGTATATGAT
Found at i:24338108 original size:27 final size:26
Alignment explanation
Indices: 24338060--24338119 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
24338050 GCGAGGCTGC
* *
24338060 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCA-AAA
* * *
24338087 CAGATATTGTGGCTAGGCCACCAAAA
1 CAGATATTGTGACGAAGCCACCAAAA
24338113 CAGATAT
1 CAGATAT
24338120 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 9 0.32
27 19 0.68
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAAAA
Found at i:24338885 original size:27 final size:27
Alignment explanation
Indices: 24338855--24338972 Score: 155
Period size: 27 Copynumber: 4.4 Consensus size: 27
24338845 GGGCAAAATG
* * * *
24338855 GTAATTTTACCCCACAAGGGTATCTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
24338882 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
24338909 ATAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
** *
24338936 GTAATTCTACTTTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
24338963 GTAATTCTAC
1 GTAATTCTAC
24338973 AACTTATCCA
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 82 1.00
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:24344028 original size:93 final size:93
Alignment explanation
Indices: 24343916--24344087 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
24343906 CGCCCATAAG
*
24343916 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
24343980 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
24344009 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
24344074 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
24344088 TCAATCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:24344082 original size:46 final size:46
Alignment explanation
Indices: 24343909--24344084 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
24343899 TGTAACCCGC
* *
24343909 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
24343955 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
24344005 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
24344048 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
24344085 TGCTCAATCA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:24347132 original size:66 final size:67
Alignment explanation
Indices: 24347044--24347180 Score: 204
Period size: 66 Copynumber: 2.1 Consensus size: 67
24347034 TCACTAGATA
* * * * *
24347044 CAGATATTGTGGCTAGGCCACCAGAACATATATATGTGGCGA-GCCACCAGATTGCAGCGAGGCT
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGCAGCAAGGCT
24347108 GC
66 GC
* *
24347110 CAGATATTGTGACGAAGTCACCAGAATAGATATATGTGGCGAGGCCACCAGATTGCAGCAAGGCT
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGCAGCAAGGCT
24347175 GC
66 GC
24347177 CAGA
1 CAGA
24347181 ATGCTTCCTC
Statistics
Matches: 63, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
66 36 0.57
67 27 0.43
ACGTcount: A:0.30, C:0.23, G:0.28, T:0.19
Consensus pattern (67 bp):
CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGCAGCAAGGCT
GC
Found at i:24347158 original size:27 final size:26
Alignment explanation
Indices: 24347111--24347161 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
24347101 CGAGGCTGCC
*
24347111 AGATATTGTGACGAAGTCACCAGAAT
1 AGATATTGTGACGAAGCCACCAGAAT
* *
24347137 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
24347162 TTGCAGCAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.20
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAT
Found at i:24347864 original size:27 final size:27
Alignment explanation
Indices: 24347794--24347925 Score: 151
Period size: 27 Copynumber: 5.0 Consensus size: 27
24347784 GGGCAAAATG
* * * * *
24347794 GTAATTTTACCCCACA-TGGTATCTCT
1 GTAATTCTACCCTACAGGGGTATTTCA
**
24347820 GTAATT-TACCCTACAGGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
24347846 GTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
24347873 ATAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
24347900 GTAATTCTACCTTACAAGGGTATTTC
1 GTAATTCTACCCTACAGGGGTATTTC
24347926 GATATTTATA
Statistics
Matches: 91, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
25 8 0.09
26 18 0.20
27 65 0.71
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:24350852 original size:54 final size:56
Alignment explanation
Indices: 24350793--24350923 Score: 205
Period size: 56 Copynumber: 2.4 Consensus size: 56
24350783 GACCATGGCA
*
24350793 TCGATATATGTGTGCGAGTAAGACCAC-GTT-ATATGTTGGAATCGATATGTGATT
1 TCGATATATGTGTGCGAGTAAGACCACTGTTAATACGTTGGAATCGATATGTGATT
* *
24350847 TCGATATATGTGTGCGAGTAAGACCACTTTTAATACGTTGGCATCGATATGTGATT
1 TCGATATATGTGTGCGAGTAAGACCACTGTTAATACGTTGGAATCGATATGTGATT
*
24350903 CCGATATAT-TGTGCGAGTAAG
1 TCGATATATGTGTGCGAGTAAG
24350924 TCCCTGTCTG
Statistics
Matches: 71, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
54 27 0.38
55 14 0.20
56 30 0.42
ACGTcount: A:0.27, C:0.13, G:0.25, T:0.34
Consensus pattern (56 bp):
TCGATATATGTGTGCGAGTAAGACCACTGTTAATACGTTGGAATCGATATGTGATT
Found at i:24350944 original size:55 final size:56
Alignment explanation
Indices: 24350794--24350957 Score: 176
Period size: 55 Copynumber: 3.0 Consensus size: 56
24350784 ACCATGGCAT
* * * * *
24350794 CGATATATGTGTGCGAGTAAGACCACGT-T-ATATGTTGGAATCGATATGTGATTT
1 CGATATATGTGTGCGAGTAAGACCACTTCTAAGACGTTGGCATCGATATGTGATTC
* *
24350848 CGATATATGTGTGCGAGTAAGACCACTTTTAATACGTTGGCATCGATATGTGATTC
1 CGATATATGTGTGCGAGTAAGACCACTTCTAAGACGTTGGCATCGATATGTGATTC
* ** *
24350904 CGATATAT-TGTGCGAGTAAGTCC-CTGTCTGGGACAG-TGGCATTGATATGTGATT
1 CGATATATGTGTGCGAGTAAGACCACT-TCTAAGAC-GTTGGCATCGATATGTGATT
24350958 ACATGTAAGA
Statistics
Matches: 96, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
54 29 0.30
55 36 0.38
56 31 0.32
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.34
Consensus pattern (56 bp):
CGATATATGTGTGCGAGTAAGACCACTTCTAAGACGTTGGCATCGATATGTGATTC
Found at i:24355968 original size:53 final size:52
Alignment explanation
Indices: 24355892--24356103 Score: 198
Period size: 53 Copynumber: 4.0 Consensus size: 52
24355882 TTACATGTAT
* * * *
24355892 CCTTTTGAACTTACCATTTCCATGTCTCGACATGGTCTTACATGGTAACCTTG
1 CCTTATGAACTTACCAATGCCATGTCTTGACATGGTCTTACATGGT-ACCTTG
* * * *
24355945 CCTTATGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTG
1 CCTTATGAACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTACC-TTG
* * *
24355998 CCTTATAGTAACTTATCAATGCCATGTCTTGACATGGTCTTA-ATGATATCTTG
1 CCTTAT-G-AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTACCTTG
* *
24356051 CCTTA-GAAACCTTA-CAATTTCCATGCCTT-AGCATGGTCTTACATGGTATCCTT
1 CCTTATG-AA-CTTACCAA-TGCCATGTCTTGA-CATGGTCTTACATGGTA-CCTT
24356104 ATACCTTATG
Statistics
Matches: 131, Mismatches: 20, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
51 7 0.05
52 26 0.20
53 60 0.46
54 9 0.07
55 29 0.22
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (52 bp):
CCTTATGAACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTACCTTG
Found at i:24356477 original size:30 final size:30
Alignment explanation
Indices: 24356429--24356487 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
24356419 TCCTTGACTC
*
24356429 AAACTTTGACAAAATTACATTTTTACCCCT
1 AAACTTTGACAAAATTACACTTTTACCCCT
* * * *
24356459 AAACTTTTACATATTTACACTTTTGCCCC
1 AAACTTTGACAAAATTACACTTTTACCCC
24356488 AAGGCTCGAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.32, C:0.25, G:0.03, T:0.39
Consensus pattern (30 bp):
AAACTTTGACAAAATTACACTTTTACCCCT
Found at i:24375392 original size:6 final size:6
Alignment explanation
Indices: 24375381--24375502 Score: 79
Period size: 6 Copynumber: 19.8 Consensus size: 6
24375371 TATCAAAACT
* * * * *
24375381 AGAATC AGAATC AGAATC AAAATC AGAATC AAAATT AG-GTGAC AAAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC
* * * *
24375430 AGAATC AGAATC GGTATC AGGTAA-C AGAATC AAAATC AGAATC AGTATC
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC AGAATC
*
24375479 AGGTAA-C AGAATC AAAATC AGAAT
1 A-G-AATC AGAATC AGAATC AGAAT
24375503 GTGAATGAAA
Statistics
Matches: 87, Mismatches: 20, Indels: 18
0.70 0.16 0.14
Matches are distributed among these distances:
5 5 0.06
6 72 0.83
7 7 0.08
8 3 0.03
ACGTcount: A:0.50, C:0.15, G:0.16, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:24375436 original size:31 final size:31
Alignment explanation
Indices: 24375392--24375502 Score: 159
Period size: 31 Copynumber: 3.6 Consensus size: 31
24375382 GAATCAGAAT
** * *
24375392 CAGAATCAAAATCAGAATCAAAATTAGGTGA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
* * *
24375423 CAAAATCAGAATCAGAATCGGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
24375454 CAGAATCAAAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
24375485 CAGAATCAAAATCAGAAT
1 CAGAATCAAAATCAGAAT
24375503 GTGAATGAAA
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 70 1.00
ACGTcount: A:0.50, C:0.15, G:0.16, T:0.19
Consensus pattern (31 bp):
CAGAATCAAAATCAGAATCAGTATCAGGTAA
Found at i:24375940 original size:27 final size:27
Alignment explanation
Indices: 24375917--24376140 Score: 344
Period size: 27 Copynumber: 8.3 Consensus size: 27
24375907 CGAGGGTTTC
*
24375917 TCGGTAATTCTACCTTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
* * *
24375944 TCAGT-ATTCCTACCCTGCAAGGGTATT
1 TCGGTAATT-CTACCCTACAGGGGTATT
24375971 TCGGTAATTCTACCCTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
* *
24375998 TCAGTAATTATA-CCTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
*
24376024 TCGATAATTCTACCCTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
*
24376051 TCGATAATTCTACCCTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
*
24376078 TCAGTAATTCTACCCTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
24376105 TCGGTAATTCTACCCTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
24376132 TCGGTAATT
1 TCGGTAATT
24376141 TTATAAATCA
Statistics
Matches: 179, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
26 26 0.15
27 150 0.84
28 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (27 bp):
TCGGTAATTCTACCCTACAGGGGTATT
Found at i:24376165 original size:54 final size:54
Alignment explanation
Indices: 24375940--24376167 Score: 176
Period size: 54 Copynumber: 4.2 Consensus size: 54
24375930 CTTACAGGGG
* * * * *** * *
24375940 TATTTCAGT-ATTCCTACCCTGCAAGGGTATTTCGGTAATTCTACCCTACAGGGG
1 TATTTCGGTAATT-CTACCCTACAGGGGTATTTCAGTAATTCTAAAATACAAGGA
* * *** * *
24375994 TATTTCAGTAATTATA-CCTACAGGGGTATTTC-GATAATTCTACCCTACAGGGG
1 TATTTCGGTAATTCTACCCTACAGGGGTATTTCAG-TAATTCTAAAATACAAGGA
* *** * *
24376047 TATTTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGG
1 TATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAAAATACAAGGA
* *
24376101 TATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTTTATAAAT-CAAGGA
1 TATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTA-AAATACAAGGA
*
24376155 TATTTGGGTAATT
1 TATTTCGGTAATT
24376168 TTATAAACTG
Statistics
Matches: 154, Mismatches: 15, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
52 1 0.01
53 46 0.30
54 102 0.66
55 5 0.03
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (54 bp):
TATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAAAATACAAGGA
Found at i:24376209 original size:26 final size:26
Alignment explanation
Indices: 24376124--24376221 Score: 101
Period size: 27 Copynumber: 3.7 Consensus size: 26
24376114 CTACCCTACA
*
24376124 GGGGTATTTCGGTAATTTTATAAA-TCA
1 GGGGTATTT-GGTAATTTTATAAACT-G
* *
24376151 AGGATATTTGGGTAATTTTATAAACTG
1 GGGGTATTT-GGTAATTTTATAAACTG
*
24376178 GGGGTACTTTGGTAATTTTA-CAACTG
1 GGGGTA-TTTGGTAATTTTATAAACTG
24376204 GGGGTATTTGAGTAATTT
1 GGGGTATTTG-GTAATTT
24376222 GGTAAACTAA
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
25 4 0.07
26 18 0.30
27 35 0.57
28 4 0.07
ACGTcount: A:0.28, C:0.06, G:0.26, T:0.41
Consensus pattern (26 bp):
GGGGTATTTGGTAATTTTATAAACTG
Found at i:24377200 original size:45 final size:45
Alignment explanation
Indices: 24377150--24377237 Score: 122
Period size: 45 Copynumber: 2.0 Consensus size: 45
24377140 AAACATGTGA
** *
24377150 CACATACATCATGAACTCAGACCACAACTCAATGAGTTTAGATGT
1 CACATACATCACAAACTCAGACCACAACTCAATGAGTTCAGATGT
* * *
24377195 CACATATATCACAAACTCAGACCACAATTCAATTAGTTCAGAT
1 CACATACATCACAAACTCAGACCACAACTCAATGAGTTCAGAT
24377238 TACATAATTC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.40, C:0.25, G:0.10, T:0.25
Consensus pattern (45 bp):
CACATACATCACAAACTCAGACCACAACTCAATGAGTTCAGATGT
Found at i:24392423 original size:7 final size:7
Alignment explanation
Indices: 24392411--24392436 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
24392401 TTCGACAAAT
24392411 GGAAAAG
1 GGAAAAG
24392418 GGAAAAG
1 GGAAAAG
24392425 GGAAAAG
1 GGAAAAG
24392432 GGAAA
1 GGAAA
24392437 TAAAAAGGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (7 bp):
GGAAAAG
Found at i:24393887 original size:43 final size:43
Alignment explanation
Indices: 24393839--24393943 Score: 131
Period size: 43 Copynumber: 2.4 Consensus size: 43
24393829 TAACGACATG
* * *
24393839 TGATTATGTGTAAGACCATGTTTGGGACATTGGCGTCATTATT
1 TGATTATGTGTAAGACCATGTCTGAGACATTAGCGTCATTATT
* * *
24393882 TGATTACGTGTAAGACTATGTCTGAGACATTAGCGTCGTTATT
1 TGATTATGTGTAAGACCATGTCTGAGACATTAGCGTCATTATT
*
24393925 TGATT-TCGAGTAAGACCAT
1 TGATTAT-GTGTAAGACCAT
24393944 AGCTGGGCTA
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
43 52 1.00
ACGTcount: A:0.26, C:0.13, G:0.24, T:0.37
Consensus pattern (43 bp):
TGATTATGTGTAAGACCATGTCTGAGACATTAGCGTCATTATT
Done.