Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 75 of 344
Found at i:24400201 original size:4 final size:4
Alignment explanation
Indices: 24400194--24400226 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
24400184 AATGACCAAC
24400194 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
24400227 ATGAATTAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:24402258 original size:48 final size:48
Alignment explanation
Indices: 24402202--24402350 Score: 208
Period size: 48 Copynumber: 3.1 Consensus size: 48
24402192 TGGTAGAATT
* * *
24402202 CCAATGCCATATCCCGGATATAGTCTTACATGGGATCACATATCGATG
1 CCAATGCCATGTCCCAGAAATAGTCTTACATGGGATCACATATCGATG
** **
24402250 CCAATGCCATGTCCCAGAAATAGTCTTACATGGGATCGTAGGTCGATG
1 CCAATGCCATGTCCCAGAAATAGTCTTACATGGGATCACATATCGATG
* * *
24402298 CCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGGTG
1 CCAATGCCATGTCCCAGAAATAGTCTTACATGGGATCACATATCGATG
24402346 CCAAT
1 CCAAT
24402351 AGCCCAGCTA
Statistics
Matches: 87, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 87 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.26
Consensus pattern (48 bp):
CCAATGCCATGTCCCAGAAATAGTCTTACATGGGATCACATATCGATG
Found at i:24404341 original size:26 final size:26
Alignment explanation
Indices: 24404311--24404365 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
24404301 GGCATTTGTG
24404311 CGAGTTACTAAATCCGGGTTAAGTAC
1 CGAGTTACTAAATCCGGGTTAAGTAC
* *
24404337 CGAGTTACTAAATCTGGGTTAAGTCC
1 CGAGTTACTAAATCCGGGTTAAGTAC
24404363 CGA
1 CGA
24404366 AGGCATTTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CGAGTTACTAAATCCGGGTTAAGTAC
Found at i:24404461 original size:40 final size:40
Alignment explanation
Indices: 24404337--24404454 Score: 193
Period size: 40 Copynumber: 3.0 Consensus size: 40
24404327 GGTTAAGTAC
24404337 CGAGTTACTAAATCTGGGTTAAGTCCCGAAGGCATTTGTG
1 CGAGTTACTAAATCTGGGTTAAGTCCCGAAGGCATTTGTG
*
24404377 CGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTG
1 CGAGTTACTAAATCTGGGTTAAGTCCCGAAGGCATTTGTG
* *
24404417 CGAGTTACTATAA-CTGGGCTATGTCCCGAAGGCATTTG
1 CGAGTTACTA-AATCTGGGTTAAGTCCCGAAGGCATTTG
24404455 AACGAGTACC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
40 71 0.97
41 2 0.03
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (40 bp):
CGAGTTACTAAATCTGGGTTAAGTCCCGAAGGCATTTGTG
Found at i:24404472 original size:80 final size:79
Alignment explanation
Indices: 24404337--24404487 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
24404327 GGTTAAGTAC
* ** *
24404337 CGAGTTACTAAATCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CGAGTTACTAAATCTGGGCTAAGTCCCGAAGGCATTTGAACGAGTTACTAAATCC-GGTTAAATC
24404402 CCGAAGGCATTTGTG
65 CCGAAGGCATTTGTG
* *
24404417 CGAGTTACTATAA-CTGGGCTATGTCCCGAAGGCATTTGAACGAG-TACCTATATCCGGTTAAAT
1 CGAGTTACTA-AATCTGGGCTAAGTCCCGAAGGCATTTGAACGAGTTA-CTAAATCCGGTTAAAT
*
24404480 TCCGAAGG
64 CCCGAAGG
24404488 TACGTGATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 16 0.26
80 44 0.71
81 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (79 bp):
CGAGTTACTAAATCTGGGCTAAGTCCCGAAGGCATTTGAACGAGTTACTAAATCCGGTTAAATCC
CGAAGGCATTTGTG
Found at i:24412441 original size:40 final size:40
Alignment explanation
Indices: 24412321--24412505 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
24412311 TTGAATGATG
* * * *
24412321 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
24412361 TCCGGACTAAGAT-CCGAAGGCATTT-TGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
24412400 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
24412440 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGGTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
24412481 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
24412506 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 10, Indels: 10
0.87 0.07 0.07
Matches are distributed among these distances:
38 1 0.01
39 28 0.22
40 95 0.73
41 6 0.05
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:24412457 original size:79 final size:82
Alignment explanation
Indices: 24412321--24412505 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
24412311 TTGAATGATG
*
24412321 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
*
24412385 T-TGCGAGTTACTA-AA
66 TGTGCGAGGTACTATAA
* * * * **
24412400 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
24412463 TTGTGCGAGGTACTATAA
65 TTGTGCGAGGTACTATAA
*
24412481 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
24412506 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
78 1 0.01
79 48 0.52
80 41 0.45
81 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGGTACTATAA
Found at i:24412519 original size:40 final size:39
Alignment explanation
Indices: 24412322--24412538 Score: 194
Period size: 40 Copynumber: 5.5 Consensus size: 39
24412312 TGAATGATGT
* * * *
24412322 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGT-ACTATAA
**
24412362 CCGGACTAAGAT-CCGAAGGCATTT-TGCGAGTTACTA-AA
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAG-TACTATAA
24412400 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
1 -CCGGGTTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAA
24412440 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGGTACTATAA
1 -CCGGGTTAAGTCCCGAAGGCATTTGTGCGA-GTACTATAA
* * ** *
24412481 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTA-CTATAA
* *
24412521 CC-GGTTAAATTCCGAAGG
1 CCGGGTTAAGTCCCGAAGG
24412539 TACGTGATTT
Statistics
Matches: 153, Mismatches: 15, Indels: 19
0.82 0.08 0.10
Matches are distributed among these distances:
38 2 0.01
39 40 0.26
40 104 0.68
41 7 0.05
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTACTATAA
Found at i:24412536 original size:119 final size:119
Alignment explanation
Indices: 24412321--24412538 Score: 266
Period size: 119 Copynumber: 1.8 Consensus size: 119
24412311 TTGAATGATG
* *
24412321 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCGAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
*
24412386 TGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
66 TGCGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * * *
24412440 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGGT-ACTATAACCGGGCTATG-TCCCGAAGGCA-
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCGAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
* *
24412502 TTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
64 TTTG--CGAGTTA-CTAAATCCGGGTTAAATCCCGAAGG
24412539 TACGTGATTT
Statistics
Matches: 84, Mismatches: 10, Indels: 10
0.81 0.10 0.10
Matches are distributed among these distances:
118 5 0.06
119 58 0.69
120 21 0.25
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (119 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCGAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
TGCGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:24424832 original size:36 final size:36
Alignment explanation
Indices: 24424731--24424835 Score: 128
Period size: 35 Copynumber: 2.9 Consensus size: 36
24424721 AAAGCCCTAA
* *
24424731 CGATATATTCTAGCACGAATG-TCCTCGGGACTTAGC
1 CGATATA-TATAGCACGAATGCTCTTCGGGACTTAGC
*
24424767 CGA-AAATACTAGCACGAATGCTCTT-GGGACTTAGC
1 CGATATATA-TAGCACGAATGCTCTTCGGGACTTAGC
24424802 CGGATATATATAGCAC-AATGCTCTTCGGGACTTA
1 C-GATATATATAGCACGAATGCTCTTCGGGACTTA
24424836 ACCCGGTATA
Statistics
Matches: 60, Mismatches: 4, Indels: 10
0.81 0.05 0.14
Matches are distributed among these distances:
34 1 0.02
35 33 0.55
36 22 0.37
37 4 0.07
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (36 bp):
CGATATATATAGCACGAATGCTCTTCGGGACTTAGC
Found at i:24426086 original size:37 final size:37
Alignment explanation
Indices: 24426027--24426165 Score: 233
Period size: 37 Copynumber: 3.8 Consensus size: 37
24426017 AGCTCAGACG
* *
24426027 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
24426064 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
24426101 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
24426138 TAATCTCCAGACGTAGTCATCGGGTCTT
1 AAATCTCCACACGTAGTCATCGGGTCTT
24426166 TAGAGCTCGG
Statistics
Matches: 98, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 98 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:24426405 original size:47 final size:47
Alignment explanation
Indices: 24426283--24426834 Score: 784
Period size: 47 Copynumber: 11.6 Consensus size: 47
24426273 CCCTTCGGGA
* * * * * *
24426283 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
24426330 CTTGTCACAT-TATACAC-TTCACATTCATCACATCGGCTATTAGCC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24426375 CTTATCACATATATACACTTTCACGTTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24426422 CTTATCACATATATACACTTTCACATTTATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24426469 CTTATCACATATATACACTTTCACATTCATCACATCAGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24426516 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24426563 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24426612 CTTATCACATATATACACTTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
24426659 CTTATCACATATATATACACTTTCACATTCATCACATTGGTCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
24426708 CTTATCACATATACACACTTTCACATTCATCACATCGACCGTTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24426755 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24426806 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
24426835 ATATATATAT
Statistics
Matches: 456, Mismatches: 39, Indels: 18
0.89 0.08 0.04
Matches are distributed among these distances:
45 30 0.07
46 14 0.03
47 259 0.57
49 109 0.24
51 44 0.10
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:24426613 original size:96 final size:96
Alignment explanation
Indices: 24426283--24426834 Score: 805
Period size: 96 Copynumber: 5.8 Consensus size: 96
24426273 CCCTTCGGGA
* * * * * *
24426283 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCTTGTCACAT-TATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
24426345 AC-TTCACATTCATCACATCGGCTATTAGCC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
24426375 CTTATCAC--ATATATACACTTTCACGTTCATCACATCGACCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
24426438 ACTTTCACATTTATCACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
24426469 CTTATCAC--ATATATACACTTTCACATTCATCACATCAGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
24426532 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
24426563 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
24426628 ACTTTCACATTCATCATATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
24426659 CTTATCACATATATATACACTTTCACATTCATCACATTGGTCATTCGGCCTTATCACATATACAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
24426724 ACTTTCACATTCATCACATCGACCGTTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
24426755 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 CTTATCAC--ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATAT
24426820 ATACACTTTCACATT
62 ATACACTTTCACATT
24426835 ATATATATAT
Statistics
Matches: 420, Mismatches: 30, Indels: 12
0.91 0.06 0.03
Matches are distributed among these distances:
91 1 0.00
92 46 0.11
93 7 0.02
94 122 0.29
96 180 0.43
98 46 0.11
100 18 0.04
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:24426844 original size:23 final size:23
Alignment explanation
Indices: 24426814--24426857 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
24426804 GCCTTATCAC
24426814 ATATATATACACTTTCACATTAT
1 ATATATATACACTTTCACATTAT
24426837 ATATATATACACTTTCACATT
1 ATATATATACACTTTCACATT
24426858 CATCATATCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.39, C:0.18, G:0.00, T:0.43
Consensus pattern (23 bp):
ATATATATACACTTTCACATTAT
Found at i:24426848 original size:72 final size:72
Alignment explanation
Indices: 24426763--24426906 Score: 279
Period size: 72 Copynumber: 2.0 Consensus size: 72
24426753 GCCTTATCAC
24426763 ATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
1 ATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
24426828 TCACATT
66 TCACATT
*
24426835 ATATATATATACACTTTCACATTCATCATATCGGCCATTAGGCCTTATCACATATATATACACTT
1 ATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
24426900 TCACATT
66 TCACATT
24426907 CATCACATTG
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 71 1.00
ACGTcount: A:0.33, C:0.24, G:0.06, T:0.37
Consensus pattern (72 bp):
ATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
TCACATT
Found at i:24426859 original size:219 final size:218
Alignment explanation
Indices: 24426620--24427052 Score: 839
Period size: 219 Copynumber: 2.0 Consensus size: 218
24426610 GCCTTATCAC
24426620 ATATATACACTTTCACATTCATCATATCGGCCATTAGGCCTTATCACATATATATACACTTTCAC
1 ATATATACACTTTCACATTCATCATATCGGCCATTAGGCCTTATCACATATATATACACTTTCAC
* *
24426685 ATTCATCACATTGGTCATTCGGCCTTATCACATATACACACTTTCACATTCATCACATCGACCGT
66 ATTCATCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCATCACATCGACCAT
24426750 TAGGCCTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
131 TAGGCCTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
24426815 TATATATACACTTTCACATTATAT
196 TATATATACAC-TTCACATTATAT
24426839 ATATATACACTTTCACATTCATCATATCGGCCATTAGGCCTTATCACATATATATACACTTTCAC
1 ATATATACACTTTCACATTCATCATATCGGCCATTAGGCCTTATCACATATATATACACTTTCAC
24426904 ATTCATCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCATCACATCGACCAT
66 ATTCATCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCATCACATCGACCAT
24426969 TAGGCCTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
131 TAGGCCTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
24427034 TATATATACACTTCACATT
196 TATATATACACTTCACATT
24427053 CATCACATCG
Statistics
Matches: 212, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
218 8 0.04
219 204 0.96
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.34
Consensus pattern (218 bp):
ATATATACACTTTCACATTCATCATATCGGCCATTAGGCCTTATCACATATATATACACTTTCAC
ATTCATCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCATCACATCGACCAT
TAGGCCTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
TATATATACACTTCACATTATAT
Found at i:24426865 original size:23 final size:23
Alignment explanation
Indices: 24426816--24426865 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
24426806 CTTATCACAT
*
24426816 ATATATACACTTTCACATTATAT
1 ATATATACACTTTCACATTATAC
24426839 ATATATACACTTTCACATTCAT-C
1 ATATATACACTTTCACATT-ATAC
24426862 ATAT
1 ATAT
24426866 CGGCCATTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 23 0.92
24 2 0.08
ACGTcount: A:0.38, C:0.20, G:0.00, T:0.42
Consensus pattern (23 bp):
ATATATACACTTTCACATTATAC
Found at i:24426891 original size:51 final size:49
Alignment explanation
Indices: 24426837--24427102 Score: 434
Period size: 49 Copynumber: 5.5 Consensus size: 49
24426827 TTCACATTAT
*
24426837 ATATATATACACTTTCACATTCATCATATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
24426886 ATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
24426935 --ATATACACACTTTCACATTCATCACATCGACCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
24426982 ATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 --ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
24427033 ATATATATACAC-TTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
24427081 --ATATATACACTTTCACATTCAT
1 ATATATATACACTTTCACATTCAT
24427103 TCAAATATAC
Statistics
Matches: 203, Mismatches: 9, Indels: 12
0.91 0.04 0.05
Matches are distributed among these distances:
46 10 0.05
47 54 0.27
48 36 0.18
49 58 0.29
51 45 0.22
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.33
Consensus pattern (49 bp):
ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:24426930 original size:121 final size:120
Alignment explanation
Indices: 24426716--24426953 Score: 379
Period size: 121 Copynumber: 2.0 Consensus size: 120
24426706 GCCTTATCAC
*
24426716 ATATACACACTTTCACATTCATCACATCGACCGTTAGGCCTTATCACATATATATATACACTTTC
1 ATATACACACTTTCACATTCATCACATCGACCATTAGGCCTTATCACA-ATATATATACACTTTC
*
24426781 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTATAT
65 ACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATACACACTTTCACATTATAT
* * *
24426839 ATATATACACTTTCACATTCATCATATCGGCCATTAGGCCTTATCAC-ATATATATACACTTTCA
1 ATATACACACTTTCACATTCATCACATCGACCATTAGGCCTTATCACAATATATATACACTTTCA
* *
24426903 CATTCATCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATT
66 CATTCATCACATCGGCCATTAGGCCTTATCACATATACACACTTTCACATT
24426954 CATCACATCG
Statistics
Matches: 108, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
119 18 0.17
121 47 0.44
123 43 0.40
ACGTcount: A:0.32, C:0.27, G:0.07, T:0.34
Consensus pattern (120 bp):
ATATACACACTTTCACATTCATCACATCGACCATTAGGCCTTATCACAATATATATACACTTTCA
CATTCATCACATCGGCCATTAGGCCTTATCACATATACACACTTTCACATTATAT
Found at i:24426997 original size:147 final size:146
Alignment explanation
Indices: 24426835--24427102 Score: 491
Period size: 147 Copynumber: 1.8 Consensus size: 146
24426825 CTTTCACATT
*
24426835 ATATATATATACACTTTCACATTCATCATATCGGCCATTAGGCCTTATCACATATATATACACTT
1 ATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC-T
* *
24426900 TCACATTCATCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCATCACATCGA
65 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATACACACTTTCACATTCATCACATCGA
24426965 CCATTAGGCCTTATCAC
130 CCATTAGGCCTTATCAC
24426982 ATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
1 ATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
*
24427047 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCAT
66 CACATTCATCACATCGGCCATTAGGCCTTATCACATATACACACTTTCACATTCAT
24427103 TCAAATATAC
Statistics
Matches: 117, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
146 55 0.47
147 62 0.53
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.34
Consensus pattern (146 bp):
ATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
CACATTCATCACATCGGCCATTAGGCCTTATCACATATACACACTTTCACATTCATCACATCGAC
CATTAGGCCTTATCAC
Found at i:24431078 original size:235 final size:235
Alignment explanation
Indices: 24430667--24431133 Score: 774
Period size: 235 Copynumber: 2.0 Consensus size: 235
24430657 TGAGTAAGTC
* * *
24430667 ACAATCATTTACTTCTAAGAAATTAAATGTGACAGCTCTAACCCATATCAGTTGCTGGAATAAGG
1 ACAATCATTTACTTCTAAGAAATTAAATGTGACAACCCTAACCCATATAAGTTGCTGGAATAAGG
* * *
24430732 TTATGAGGGATTACCGGACATATCGGAACATTCAGATATACTTCAACATAACATAATCAAAACAT
66 TTACGAGGGATTACCGGACATATCGGAACATTCACATACACTTCAACATAACATAATCAAAACAT
*
24430797 ATAATAATCGTTCACAATTGTCCGTTATATAAGTCTAAGAGACCTTAAACATGCTTTAGAAAGGG
131 ATAATAATCATTCACAATTGTCCGTTATATAAGTCTAAGAGACCTTAAACATGCTTTAGAAAGGG
*
24430862 GTTGGGACTAAACTGAGCTCATACAAAATTTTTCAAAACT
196 GTTGGGACTAAACCGAGCTCATACAAAATTTTTCAAAACT
*
24430902 ACAATCATTTACTTCTAAGAAATTAAATGTGACAACCCTAACCCATATAAGTTGCTGGAATAGGG
1 ACAATCATTTACTTCTAAGAAATTAAATGTGACAACCCTAACCCATATAAGTTGCTGGAATAAGG
* * *
24430967 TTACGATGGATTACTGGACATATCGGAACATTCACATACACTT-AAGCATAACATAGTCAAAACA
66 TTACGAGGGATTACCGGACATATCGGAACATTCACATACACTTCAA-CATAACATAATCAAAACA
* * *
24431031 TATAATAATCATTCACAATTTTCCGTTATATAGGTCTAGGAGACCTTAAACATGCTTTAGAAAGG
130 TATAATAATCATTCACAATTGTCCGTTATATAAGTCTAAGAGACCTTAAACATGCTTTAGAAAGG
*
24431096 GGTTGGGACTAAACCGAGCTCATACAAATTTTTTCAAA
195 GGTTGGGACTAAACCGAGCTCATACAAAATTTTTCAAA
24431134 GTTATAAAGG
Statistics
Matches: 215, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
234 2 0.01
235 213 0.99
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (235 bp):
ACAATCATTTACTTCTAAGAAATTAAATGTGACAACCCTAACCCATATAAGTTGCTGGAATAAGG
TTACGAGGGATTACCGGACATATCGGAACATTCACATACACTTCAACATAACATAATCAAAACAT
ATAATAATCATTCACAATTGTCCGTTATATAAGTCTAAGAGACCTTAAACATGCTTTAGAAAGGG
GTTGGGACTAAACCGAGCTCATACAAAATTTTTCAAAACT
Found at i:24432583 original size:44 final size:42
Alignment explanation
Indices: 24432435--24432601 Score: 120
Period size: 42 Copynumber: 3.9 Consensus size: 42
24432425 TGGAAAGCTC
* * * ** ** *
24432435 ATACAATGCTAATGTCCTAGATGTGGTCTTACATGTAATCAA
1 ATACGATGCCAATGTCCCAGACATGGTCTTACATAAAATAAA
** * * * *
24432477 ATATTATGCCACTGTCCCAGACAGGGTCTTACAGAAAATCAA
1 ATACGATGCCAATGTCCCAGACATGGTCTTACATAAAATAAA
* * * *
24432519 ATACGATGTCGATGACCCAGACATGATCTTACATATAAATAATA
1 ATACGATGCCAATGTCCCAGACATGGTCTTACATA-AAATAA-A
*
24432563 AGT-CGATGCCAATGTCCCAGACGTGGTCTTACATGAAAA
1 A-TACGATGCCAATGTCCCAGACATGGTCTTACAT-AAAA
24432602 CACATATCGG
Statistics
Matches: 95, Mismatches: 26, Indels: 6
0.75 0.20 0.05
Matches are distributed among these distances:
42 57 0.60
43 5 0.05
44 31 0.33
45 2 0.02
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.27
Consensus pattern (42 bp):
ATACGATGCCAATGTCCCAGACATGGTCTTACATAAAATAAA
Found at i:24436339 original size:43 final size:43
Alignment explanation
Indices: 24436241--24436390 Score: 130
Period size: 42 Copynumber: 3.5 Consensus size: 43
24436231 TAGAGGTTGT
* * * * *
24436241 CTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAGGGG
1 CTTACACGAAATCAAATATCGATGCCAATGTCCCAGACACGAG
*
24436284 CTTACACGAAATCAAATA-CGATGCCAATGTCCCAGACACGAT
1 CTTACACGAAATCAAATATCGATGCCAATGTCCCAGACACGAG
* *
24436326 CTTACACATAAATCATAAGT-T-GATGCCAACGTCCCA-A-ACGTAG
1 CTTACAC-GAAATCA-AA-TATCGATGCCAATGTCCCAGACACG-AG
* *
24436369 TCTTACACGAAAACACATATCG
1 -CTTACACGAAATCAAATATCG
24436391 GATCCTATGT
Statistics
Matches: 87, Mismatches: 12, Indels: 16
0.76 0.10 0.14
Matches are distributed among these distances:
41 1 0.01
42 32 0.37
43 30 0.34
44 23 0.26
45 1 0.01
ACGTcount: A:0.36, C:0.27, G:0.15, T:0.22
Consensus pattern (43 bp):
CTTACACGAAATCAAATATCGATGCCAATGTCCCAGACACGAG
Found at i:24437671 original size:24 final size:24
Alignment explanation
Indices: 24437644--24437741 Score: 133
Period size: 24 Copynumber: 4.0 Consensus size: 24
24437634 AAGGCTGTCA
*
24437644 GGAGAAGATTTAGGAGCTAATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
*
24437668 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* * *
24437692 GGAGAGGATTTAGGATCTGATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
*
24437716 GGAGAAGGTTTAGGAGCTGATCAAG
1 GGAGAAGATTTAGGAGCTGAT-AAG
24437741 G
1 G
24437742 AGTGGGAGTT
Statistics
Matches: 65, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
24 62 0.95
25 3 0.05
ACGTcount: A:0.36, C:0.05, G:0.38, T:0.21
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:24439454 original size:32 final size:32
Alignment explanation
Indices: 24439362--24439454 Score: 91
Period size: 32 Copynumber: 2.8 Consensus size: 32
24439352 TATAGGCCAT
* *
24439362 ACTGTTATCTGAATAGGGGGCTAAGGCCCAGTTT
1 ACTGTTATCTGAATA--GGGCTTAGGCCCAGTTC
* * *
24439396 AATGTAATCTGAAAAGGGCTCT-GGCCCAGTATC
1 ACTGTTATCTGAATAGGGCT-TAGGCCCAGT-TC
24439429 ACTGTTATCTGAATA-GGCTTAGGCCC
1 ACTGTTATCTGAATAGGGCTTAGGCCC
24439455 GATAGGCTTA
Statistics
Matches: 48, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
31 1 0.02
32 22 0.46
33 13 0.27
34 12 0.25
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (32 bp):
ACTGTTATCTGAATAGGGCTTAGGCCCAGTTC
Found at i:24440292 original size:21 final size:22
Alignment explanation
Indices: 24440266--24440315 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
24440256 ACTTGTTTTT
24440266 TTTCAAACGTTTG-AAAATGGA
1 TTTCAAACGTTTGAAAAATGGA
*
24440287 TTTCAAAGGTTTGAAAAATGGA
1 TTTCAAACGTTTGAAAAATGGA
24440309 TTTCAAA
1 TTTCAAA
24440316 AAGCCTAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
21 12 0.44
22 15 0.56
ACGTcount: A:0.40, C:0.08, G:0.18, T:0.34
Consensus pattern (22 bp):
TTTCAAACGTTTGAAAAATGGA
Found at i:24445471 original size:24 final size:24
Alignment explanation
Indices: 24445444--24445541 Score: 142
Period size: 24 Copynumber: 4.0 Consensus size: 24
24445434 AAGGCTGTCA
*
24445444 GGAGAAGATTTAGAAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
*
24445468 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* * *
24445492 GGAGAGGATTTAGGAGCTGGTAAA
1 GGAGAAGATTTAGGAGCTGATAAG
24445516 GGAGAAGATTTAGGAGCTGATCAAG
1 GGAGAAGATTTAGGAGCTGAT-AAG
24445541 G
1 G
24445542 AGCAGGAGTT
Statistics
Matches: 66, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
24 63 0.95
25 3 0.05
ACGTcount: A:0.36, C:0.05, G:0.39, T:0.20
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:24453040 original size:25 final size:25
Alignment explanation
Indices: 24453012--24453081 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
24453002 CTCTTTTAAT
*
24453012 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
24453037 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
24453062 AACTAGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
24453082 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:24454019 original size:27 final size:27
Alignment explanation
Indices: 24453989--24454096 Score: 103
Period size: 27 Copynumber: 3.9 Consensus size: 27
24453979 GTAAATCTAC
24453989 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
24454016 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* *
24454042 AGAAAGTCAAGGGTATTTCTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* * **
24454072 AAATCAGGGGTATTTTGGTAATTTT
1 AAACCAAGGGTATTTCAGTAATTTT
24454097 ACAAATTGAG
Statistics
Matches: 68, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
26 1 0.01
27 41 0.60
28 7 0.10
29 18 0.26
30 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:24454094 original size:56 final size:54
Alignment explanation
Indices: 24453986--24454155 Score: 175
Period size: 54 Copynumber: 3.1 Consensus size: 54
24453976 TTGGTAAATC
* * *
24453986 TACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCT-ATAATTTT
1 TACAAATCAAGGGTATTTC-GTAATTTTGTAAACCAGTGGTATTT-TGGTAATTTT
* * *
24454041 TAGAAAGTCAAGGGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGGTAA-TTT
1 TACAAA-TCAAGGGTATTTC-GTAATTTTGTAAACCAGTGGTATTTTGGTAATTTT
** ***
24454096 TACAAATTGAGGGTATTTCGATAATTTCACAAACCAGTGGTATTTTGGTAA-TTT
1 TACAAATCAAGGGTATTTCG-TAATTTTGTAAACCAGTGGTATTTTGGTAATTTT
24454150 TACAAA
1 TACAAA
24454156 CTAGGGGTAT
Statistics
Matches: 97, Mismatches: 15, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
53 1 0.01
54 45 0.46
55 14 0.14
56 37 0.38
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (54 bp):
TACAAATCAAGGGTATTTCGTAATTTTGTAAACCAGTGGTATTTTGGTAATTTT
Found at i:24454102 original size:27 final size:27
Alignment explanation
Indices: 24454038--24454175 Score: 129
Period size: 27 Copynumber: 5.1 Consensus size: 27
24454028 TTTCTATAAT
* *
24454038 TTTTAGAAAGTCAAGGGTATTTCT-GTAA
1 TTTTACAAA-TCAGGGGTATTT-TGGTAA
**
24454066 TTTTGTAAATCAGGGGTATTTTGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
* * *
24454093 TTTTACAAAT-TGAGGGTATTTCGATAA
1 TTTTACAAATCAG-GGGTATTTTGGTAA
* * *
24454120 TTTCACAAACCAGTGGTATTTTGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
24454147 TTTTACAAA-CTAGGGGTATTTTGGTAA
1 TTTTACAAATC-AGGGGTATTTTGGTAA
24454174 TT
1 TT
24454176 CTATCCTACA
Statistics
Matches: 90, Mismatches: 16, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
26 3 0.03
27 79 0.88
28 8 0.09
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (27 bp):
TTTTACAAATCAGGGGTATTTTGGTAA
Found at i:24454362 original size:27 final size:27
Alignment explanation
Indices: 24454207--24454351 Score: 229
Period size: 27 Copynumber: 5.4 Consensus size: 27
24454197 GTAATTTCAC
*
24454207 AATCAAGGGTAAAACGGTAATT-TGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
24454233 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
24454260 AATCGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
24454287 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
24454314 AATCGAAGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
24454341 AATCGAGGGTA
1 AATCGAGGGTA
24454352 CTTTGGTAAT
Statistics
Matches: 107, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
26 20 0.19
27 87 0.81
ACGTcount: A:0.41, C:0.10, G:0.23, T:0.26
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:24454374 original size:81 final size:79
Alignment explanation
Indices: 24454197--24454376 Score: 218
Period size: 81 Copynumber: 2.2 Consensus size: 79
24454187 GGGTATTTCA
* * * * *
24454197 GTAATTTCACAATCAAGGGTAAAACGGTAATTTGTAAATCGAGGGTAAAATGGTAATTCTATAAA
1 GTAATTTTACAATCGAGGGTAAAACGGTAATTTATAAATCGAAGGTAAAACGGTAATTCTATAAA
24454262 TCGAGGGTAAAACG
66 TCGAGGGTAAAACG
* *
24454276 ATAATTCTGTA-AATCGAGGGTAAAACGGTAATTCTATAAATCGAAGGTAAAACGGTAATTCTGT
1 GTAATT-T-TACAATCGAGGGTAAAACGGTAATT-TATAAATCGAAGGTAAAACGGTAATTCTAT
****
24454340 AAATCGAGGGTACTTTG
63 AAATCGAGGGTAAAACG
24454357 GTAATTTTACAAGTCGAGGG
1 GTAATTTTACAA-TCGAGGG
24454377 CATTTCAATA
Statistics
Matches: 84, Mismatches: 12, Indels: 8
0.81 0.12 0.08
Matches are distributed among these distances:
79 7 0.08
80 25 0.30
81 52 0.62
ACGTcount: A:0.38, C:0.11, G:0.23, T:0.28
Consensus pattern (79 bp):
GTAATTTTACAATCGAGGGTAAAACGGTAATTTATAAATCGAAGGTAAAACGGTAATTCTATAAA
TCGAGGGTAAAACG
Found at i:24463712 original size:15 final size:14
Alignment explanation
Indices: 24463692--24463743 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
24463682 ATGTTTATTA
24463692 TTTTGGATTTAGAGT
1 TTTTGG-TTTAGAGT
*
24463707 TTTTGGTTTAGGGT
1 TTTTGGTTTAGAGT
* * *
24463721 TTATAGTTTATAGT
1 TTTTGGTTTAGAGT
*
24463735 TTGTGGTTT
1 TTTTGGTTT
24463744 TTTGTTTTAT
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
14 24 0.80
15 6 0.20
ACGTcount: A:0.15, C:0.00, G:0.27, T:0.58
Consensus pattern (14 bp):
TTTTGGTTTAGAGT
Found at i:24463736 original size:21 final size:22
Alignment explanation
Indices: 24463699--24463762 Score: 55
Period size: 21 Copynumber: 3.0 Consensus size: 22
24463689 TTATTTTGGA
* *
24463699 TTTAGAGTTTT-TGGTTTAGGG
1 TTTATAGTTTTATAGTTTAGGG
24463720 TTTATAG-TTTATAGTTT-GTGG
1 TTTATAGTTTTATAGTTTAG-GG
* *
24463741 TTTTTTGTTTTATAG-TTAGGG
1 TTTATAGTTTTATAGTTTAGGG
24463762 T
1 T
24463763 CGTGGTACTG
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
20 4 0.11
21 23 0.66
22 8 0.23
ACGTcount: A:0.16, C:0.00, G:0.27, T:0.58
Consensus pattern (22 bp):
TTTATAGTTTTATAGTTTAGGG
Found at i:24463923 original size:7 final size:7
Alignment explanation
Indices: 24463911--24463983 Score: 53
Period size: 7 Copynumber: 10.6 Consensus size: 7
24463901 AATATATATA
24463911 TTTAGGG
1 TTTAGGG
24463918 TTTAGGG
1 TTTAGGG
* *
24463925 TGT-CGG
1 TTTAGGG
24463931 TTT-GTGG
1 TTTAG-GG
*
24463938 TTTATGG
1 TTTAGGG
*
24463945 TTTATGG
1 TTTAGGG
*
24463952 TTTATGG
1 TTTAGGG
24463959 TTT-GAGG
1 TTTAG-GG
*
24463966 TTTAAGG
1 TTTAGGG
24463973 TTTAGGG
1 TTTAGGG
24463980 TTTA
1 TTTA
24463984 CTGTTGGAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 8
0.77 0.11 0.11
Matches are distributed among these distances:
6 4 0.07
7 50 0.93
ACGTcount: A:0.14, C:0.01, G:0.36, T:0.49
Consensus pattern (7 bp):
TTTAGGG
Found at i:24463952 original size:14 final size:14
Alignment explanation
Indices: 24463929--24463983 Score: 67
Period size: 14 Copynumber: 3.9 Consensus size: 14
24463919 TTAGGGTGTC
*
24463929 GGTTTGTGGTTTAT
1 GGTTTATGGTTTAT
24463943 GGTTTATGGTTTAT
1 GGTTTATGGTTTAT
*
24463957 GGTTTGA-GGTTTAA
1 GGTTT-ATGGTTTAT
*
24463971 GGTTTAGGGTTTA
1 GGTTTATGGTTTA
24463984 CTGTTGGAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
13 1 0.03
14 35 0.95
15 1 0.03
ACGTcount: A:0.15, C:0.00, G:0.35, T:0.51
Consensus pattern (14 bp):
GGTTTATGGTTTAT
Found at i:24463959 original size:21 final size:20
Alignment explanation
Indices: 24463929--24463983 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 20
24463919 TTAGGGTGTC
* *
24463929 GGTTTGTGGTTTATGGTTTAT
1 GGTTTATGGTTTA-GGTTTAA
24463950 GGTTTATGGTTTGAGGTTTAA
1 GGTTTATGGTTT-AGGTTTAA
*
24463971 GGTTTAGGGTTTA
1 GGTTTATGGTTTA
24463984 CTGTTGGAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
20 1 0.03
21 28 0.93
22 1 0.03
ACGTcount: A:0.15, C:0.00, G:0.35, T:0.51
Consensus pattern (20 bp):
GGTTTATGGTTTAGGTTTAA
Found at i:24464208 original size:18 final size:17
Alignment explanation
Indices: 24464176--24464209 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
24464166 TATTTATTTT
24464176 AATATATTAAAATTATC
1 AATATATTAAAATTATC
*
24464193 AATATAATTTAAATTAT
1 AATAT-ATTAAAATTAT
24464210 TTAAGAGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (17 bp):
AATATATTAAAATTATC
Found at i:24466731 original size:29 final size:29
Alignment explanation
Indices: 24466660--24466764 Score: 88
Period size: 29 Copynumber: 3.7 Consensus size: 29
24466650 CATATAACCC
* *
24466660 ACTAGGCCCAA-TCTTATTCAAATGGCCT
1 ACTAGGCCCAATTCATATTCATATGGCCT
* * * *
24466688 ATCT-GGCCTAGTTCATATTCTTATGGTCT
1 A-CTAGGCCCAATTCATATTCATATGGCCT
** *
24466717 ACTAGGCCCAATTCACCTTCATATGGCCC
1 ACTAGGCCCAATTCATATTCATATGGCCT
* *
24466746 ATTAGGCCCAAATCATATT
1 ACTAGGCCCAATTCATATT
24466765 ATACTCATGC
Statistics
Matches: 57, Mismatches: 17, Indels: 5
0.72 0.22 0.06
Matches are distributed among these distances:
28 8 0.14
29 49 0.86
ACGTcount: A:0.26, C:0.28, G:0.14, T:0.32
Consensus pattern (29 bp):
ACTAGGCCCAATTCATATTCATATGGCCT
Found at i:24466870 original size:19 final size:19
Alignment explanation
Indices: 24466837--24466883 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
24466827 TGGGCCCAAC
*
24466837 AGCCCA-TCAGGCCCATTT
1 AGCCCATTCTGGCCCATTT
24466855 AGCCCATTCTGGCCCATTT
1 AGCCCATTCTGGCCCATTT
* *
24466874 GGCCAATTCT
1 AGCCCATTCT
24466884 CAACCCAAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
18 6 0.24
19 19 0.76
ACGTcount: A:0.19, C:0.36, G:0.17, T:0.28
Consensus pattern (19 bp):
AGCCCATTCTGGCCCATTT
Found at i:24472556 original size:43 final size:42
Alignment explanation
Indices: 24472486--24472674 Score: 152
Period size: 43 Copynumber: 4.5 Consensus size: 42
24472476 AAAGCACCAT
* ***
24472486 TAAAGATCATG-TCTTTAGCGACATTTTTGGGGAAAACGTCAC
1 TAAAGGTCATGTTCTTTAGCGGTGTTTTT-GGGAAAACGTCAC
* *
24472528 TAAAGCTCATGTTCTTTAGCGGTGTTTTTGGGGAAAGCAC-T-AT
1 TAAAGGTCATGTTCTTTAGCGGTGTTTTT-GGGAAA--ACGTCAC
* * *
24472571 TAAAGGTCGTGTTCTTTAGCGGTGGTTTTGGGAAAAGCG-CTGC
1 TAAAGGTCATGTTCTTTAGCGGTGTTTTTGGGAAAA-CGTC-AC
* * * * * *
24472614 TAAAGGTCATGTTCTGTAGTGGTGTTTCTGGAAAAACGCCGC
1 TAAAGGTCATGTTCTTTAGCGGTGTTTTTGGGAAAACGTCAC
*
24472656 TAAAGGTCATGTTATTTAG
1 TAAAGGTCATGTTCTTTAG
24472675 TGGTATTTCT
Statistics
Matches: 121, Mismatches: 18, Indels: 16
0.78 0.12 0.10
Matches are distributed among these distances:
40 1 0.01
41 1 0.01
42 37 0.31
43 79 0.65
44 1 0.01
45 2 0.02
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.34
Consensus pattern (42 bp):
TAAAGGTCATGTTCTTTAGCGGTGTTTTTGGGAAAACGTCAC
Found at i:24472660 original size:42 final size:42
Alignment explanation
Indices: 24472518--24472691 Score: 145
Period size: 42 Copynumber: 4.1 Consensus size: 42
24472508 ATTTTTGGGG
* * * * * *
24472518 AAAACGTCACTAAAGCTCATGTTCTTTAGCGGTGTTTTTGGG
1 AAAACGCCGCTAAAGGTCATGTTCTTTAGTGGTGTTTCTGGA
* ** * *
24472560 GAAA-GCACTATTAAAGGTCGTGTTCTTTAGCGGTGGTTT-TGGGA
1 AAAACGC-C-GCTAAAGGTCATGTTCTTTAGTGGT-GTTTCT-GGA
* * *
24472604 AAAGCGCTGCTAAAGGTCATGTTCTGTAGTGGTGTTTCTGGA
1 AAAACGCCGCTAAAGGTCATGTTCTTTAGTGGTGTTTCTGGA
* * *
24472646 AAAACGCCGCTAAAGGTCATGTTATTTAGTGGTATTTCTGGT
1 AAAACGCCGCTAAAGGTCATGTTCTTTAGTGGTGTTTCTGGA
24472688 AAAA
1 AAAA
24472692 GTGTGGCTAA
Statistics
Matches: 106, Mismatches: 20, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
41 1 0.01
42 51 0.48
43 44 0.42
44 8 0.08
45 2 0.02
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.34
Consensus pattern (42 bp):
AAAACGCCGCTAAAGGTCATGTTCTTTAGTGGTGTTTCTGGA
Found at i:24477199 original size:46 final size:45
Alignment explanation
Indices: 24476965--24477327 Score: 211
Period size: 46 Copynumber: 7.7 Consensus size: 45
24476955 AGGGTATAAT
*
24476965 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-CATC-CATCAA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTACATCTC-T-AG
* * * ** *
24477012 GTCAATGCCATGTCCCAGACATGGTCTTACACTGACTATCGAAATCGAG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTA-C-ATCTCTAG
* * * * *
24477061 GCC-AGCGCCATGTCCCAGACAAGGTCTTACACTAGCTCTCACATATC-CG
1 GCCGA-TG-CATGTCCCAGAC-ATGTCTTACACT-G-GCT-ACATCTCTAG
* * *
24477110 TGCCGATGCCATGTCCTAGACATGTTCTTACACTGAC-ATATCTCGTA-
1 -GCCGATG-CATGTCCCAGACATG-TCTTACACTGGCTACATCTC-TAG
* *
24477157 GCCGATGCGTGTCCCAGACATGTCTTACACTGGCGTACATCTCAAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-TACATCTCTAG
* * * * * *
24477203 GTCGATGCATGTCCCAGACATGTCTTACATTAGCTCTCATCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCT-ACATCTCTAG
* * *
24477249 GCCGATGCCATGTCCCAAACATGGTCTTACATTGGCT-C-TCATAATATG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTACATC-T-CTA-G
24477297 GCCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
24477328 AGCATACAAT
Statistics
Matches: 254, Mismatches: 39, Indels: 47
0.75 0.11 0.14
Matches are distributed among these distances:
44 11 0.04
45 17 0.07
46 73 0.29
47 61 0.24
48 22 0.09
49 32 0.13
50 32 0.13
51 5 0.02
52 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.26
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTACATCTCTAG
Found at i:24481109 original size:93 final size:94
Alignment explanation
Indices: 24480946--24481384 Score: 681
Period size: 93 Copynumber: 4.6 Consensus size: 94
24480936 CCGTTCGGGA
* * *
24480946 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
24481011 TTTCACATTCATCACATTGGCCATT-GGC
66 TTTCACATTCATCACATTGGCCATTAGGC
* *
24481039 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCA-
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
*
24481103 TGTTCACATTCATCACATTGGCCATT-CGC
66 T-TTCACATTCATCACATTGGCCATTAGGC
* *
24481132 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATA
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATA
*
24481196 CACTTTCACATTCATCACATCGGCCATTAGGC
63 CACTTTCACATTCATCACATTGGCCATTAGGC
*
24481228 CTTATCACATATATACACTTTCACATTCATCACA-TGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATAC
24481292 ACTTTCACATTCATCACATTGGCCATTAGGC
64 ACTTTCACATTCATCACATTGGCCATTAGGC
24481323 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATA
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATA
24481385 CTATCATGTA
Statistics
Matches: 319, Mismatches: 17, Indels: 17
0.90 0.05 0.05
Matches are distributed among these distances:
92 2 0.01
93 135 0.42
95 98 0.31
96 38 0.12
97 27 0.08
98 19 0.06
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
TTTCACATTCATCACATTGGCCATTAGGC
Found at i:24481222 original size:49 final size:47
Alignment explanation
Indices: 24480946--24481384 Score: 672
Period size: 47 Copynumber: 9.3 Consensus size: 47
24480936 CCGTTCGGGA
* * *
24480946 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
24480993 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATT-GGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
24481039 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
24481086 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTC-GC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
24481132 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
24481179 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
24481228 CTTATCACATATATACACTTTCACATTCATCACA-TGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
24481274 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
24481323 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
24481372 CTTATCACATATA
1 CTTATCACATATA
24481385 CTATCATGTA
Statistics
Matches: 368, Mismatches: 15, Indels: 18
0.92 0.04 0.04
Matches are distributed among these distances:
46 108 0.29
47 124 0.34
48 26 0.07
49 109 0.30
50 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:24482875 original size:56 final size:56
Alignment explanation
Indices: 24482808--24482926 Score: 222
Period size: 56 Copynumber: 2.1 Consensus size: 56
24482798 TATTAGTTTA
24482808 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
24482864 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
24482920 TT-CCCAT
1 TTGCCCAT
24482927 CATCCCTTGC
Statistics
Matches: 62, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
55 5 0.08
56 57 0.92
ACGTcount: A:0.23, C:0.24, G:0.08, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:24484240 original size:40 final size:40
Alignment explanation
Indices: 24484195--24484510 Score: 411
Period size: 40 Copynumber: 7.9 Consensus size: 40
24484185 CGAATACACG
* * * *
24484195 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * ** * *
24484235 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
24484275 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
24484315 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGTTACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
24484355 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
24484395 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
24484435 TCACTAGCAT-AATGCTCTTCGGGACTTAGCCCGGTTATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * ** *
24484474 GTAACTCGCACAAATGC-CTTCGGGACTTAACCCGGAT
1 -TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
24484511 TTAGTAACTC
Statistics
Matches: 247, Mismatches: 27, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
39 26 0.11
40 216 0.87
41 5 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:24484345 original size:80 final size:80
Alignment explanation
Indices: 24484208--24484548 Score: 402
Period size: 80 Copynumber: 4.3 Consensus size: 80
24484198 CCAGCATGAT
* * * * ** *
24484208 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
*
24484273 TATCACTAGCACGAA
66 CATCACTAGCACGAA
* * *
24484288 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGTTA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
*
24484353 CATCACTAGCATGAA
66 CATCACTAGCACGAA
* *
24484368 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
*
24484433 CATCACTAGCA-TAA
66 CATCACTAGCACGAA
* * * * * *
24484447 TGCTCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGC-CTTCGGGACTTAACCCGGAT
1 TGCTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
** * * *
24484511 TTAGTAACTCGCACCAA
65 ACA-TCACTAGCACGAA
24484528 TGC-CTTCGGG-CTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
24484549 CATCATTCGA
Statistics
Matches: 228, Mismatches: 30, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
79 56 0.25
80 167 0.73
81 5 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
CATCACTAGCACGAA
Found at i:24484413 original size:120 final size:120
Alignment explanation
Indices: 24484195--24484510 Score: 456
Period size: 120 Copynumber: 2.6 Consensus size: 120
24484185 CGAATACACG
* * * * * * *
24484195 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGG
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGTTATATCACTAGCACGAATGCTCTTCGGGA
* * *
24484260 TTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
66 CTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
* *
24484315 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGTTACATCACTAGCATGAATGCTCTTCGGGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGTTATATCACTAGCACGAATGCTCTTCGGGA
*
24484380 CTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
66 CTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
* * *
24484435 TCACTAGCAT-AATGCTCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGC-CTTCGGG
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGTTATA-TCACTAGCACGAATGCTCTTCGGG
*
24484498 ACTTAACCCGGAT
65 ACTTAGCCCGGAT
24484511 TTAGTAACTC
Statistics
Matches: 176, Mismatches: 19, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
119 47 0.27
120 129 0.73
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGTTATATCACTAGCACGAATGCTCTTCGGGA
CTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
Found at i:24484516 original size:40 final size:41
Alignment explanation
Indices: 24484212--24484548 Score: 197
Period size: 40 Copynumber: 8.5 Consensus size: 41
24484202 CATGATTGCT
* *
24484212 CTTCGGGACCTAGCCCGGA-TATA--ACAC-CAGCACGAATGC
1 CTTCGGGACTTAGCCCGGATTATAGTA-ACTC-GCACAAATGC
** * * * *
24484251 TCTTCGGGGTTTAGCACGGA-TATA-TCACTAGCACGAATGC
1 -CTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGC
* * * * **
24484291 TCTTCGGAACTTAGCCCGGA-TACA-TCACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGC
* * * **
24484331 TCTTCGGGACTTAGCCCGG-TTACA-TCACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGC
* * * **
24484371 TCTTCGGGACTTAGCCCGGA-TACA-TCACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGC
* * * * *
24484411 TCTTCGGAACTTAGCCCGGA-TACA-TCACTAGCA-TAATGC
1 -CTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGC
24484450 TCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCACAAATGC
1 -CTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGC
* *
24484491 CTTCGGGACTTAACCCGGATT-TAGTAACTCGCACCAATGC
1 CTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGC
24484531 CTTCGGG-CTTAGCCCGGA
1 CTTCGGGACTTAGCCCGGA
24484549 CATCATTCGA
Statistics
Matches: 266, Mismatches: 23, Indels: 17
0.87 0.08 0.06
Matches are distributed among these distances:
39 36 0.14
40 223 0.84
41 7 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (41 bp):
CTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGC
Found at i:24484530 original size:120 final size:120
Alignment explanation
Indices: 24484195--24484548 Score: 450
Period size: 120 Copynumber: 3.0 Consensus size: 120
24484185 CGAATACACG
* * * *
24484195 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGG--ATATAACACCAGCACGAATGCTCTTCGG
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGTTATATAAC-TC-GCACGAATGCTCTTCGG
** *
24484258 GGTTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
64 GACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
* * * *
24484315 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGTTACATCACTAGCATGAATGCTCTTCGGGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGTTATATAACTCGCACGAATGCTCTTCGGGA
* *
24484380 CTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
66 CTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
*
24484435 TCACTAGCAT-AATGCTCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGC-CTTCGGG
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGTTATA-TAACTCGCACGAATGCTCTTCGGG
* * * * * *
24484498 ACTTAACCCGGATTTAGTAACTCGCACCAATGC-CTTCGG-GCTTAGCCCGGA
65 ACTTAGCCCGGATATA-TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGA
24484549 CATCATTCGA
Statistics
Matches: 204, Mismatches: 26, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
118 11 0.05
119 54 0.26
120 134 0.66
122 5 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGTTATATAACTCGCACGAATGCTCTTCGGGA
CTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
Found at i:24487089 original size:49 final size:47
Alignment explanation
Indices: 24486810--24487251 Score: 690
Period size: 47 Copynumber: 9.3 Consensus size: 47
24486800 CCCTTCGGGA
* * *
24486810 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
24486857 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
24486904 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
24486951 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
24486998 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
24487045 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
24487094 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
24487141 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
24487190 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
24487239 CTTATCACATATA
1 CTTATCACATATA
24487252 CTATCATGTA
Statistics
Matches: 374, Mismatches: 15, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 237 0.63
49 135 0.36
50 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:24487548 original size:13 final size:13
Alignment explanation
Indices: 24487530--24487557 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
24487520 AATCACTTGC
24487530 CATTAAATCAACT
1 CATTAAATCAACT
24487543 CATTAAATCAACT
1 CATTAAATCAACT
24487556 CA
1 CA
24487558 ATATGTCCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.25, G:0.00, T:0.29
Consensus pattern (13 bp):
CATTAAATCAACT
Found at i:24488187 original size:56 final size:56
Alignment explanation
Indices: 24488116--24488235 Score: 222
Period size: 56 Copynumber: 2.1 Consensus size: 56
24488106 TATTAGGTTA
24488116 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
* *
24488172 TTGTCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
24488228 TTGCCCAT
1 TTGCCCAT
24488236 CATCCCTTGC
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 61 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.46
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:24500691 original size:26 final size:26
Alignment explanation
Indices: 24500655--24500706 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
24500645 GAGAGAAGTG
*
24500655 AAACTTCCTGAATGATGGATGAACTC
1 AAACTTCCTGAATGATGGATAAACTC
24500681 AAACTTCCTGAATGATGGATAAACTC
1 AAACTTCCTGAATGATGGATAAACTC
24500707 CTTGAATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (26 bp):
AAACTTCCTGAATGATGGATAAACTC
Found at i:24511886 original size:30 final size:30
Alignment explanation
Indices: 24511850--24511918 Score: 93
Period size: 30 Copynumber: 2.3 Consensus size: 30
24511840 CACATGGGCA
* *
24511850 GACACACGGGCGTGTGTCTAGACCGTGTGT
1 GACACACGGGCGTGTGTCAAAACCGTGTGT
* *
24511880 GACACACAGGCGTGTGTCAAAACCGTGTTT
1 GACACACGGGCGTGTGTCAAAACCGTGTGT
*
24511910 GATACACGG
1 GACACACGG
24511919 CCTGGTAACA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.23, C:0.23, G:0.32, T:0.22
Consensus pattern (30 bp):
GACACACGGGCGTGTGTCAAAACCGTGTGT
Found at i:24513511 original size:48 final size:47
Alignment explanation
Indices: 24513424--24513704 Score: 204
Period size: 48 Copynumber: 5.8 Consensus size: 47
24513414 ATACTAGGGT
* * * *
24513424 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATCGCATCGGCATTTA
1 TATGAGAGCCAGTGTAAGACCATGTTAGG-ACATGGCATCGGCATCTA
* * * ** *
24513472 TATGAGAGCTAGTGTAAGATCATGTCTAGGACATGGCATCGACCCCGA
1 TATGAGAGCCAGTGTAAGACCATGT-TAGGACATGGCATCGGCATCTA
* * * *
24513520 CATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTA
1 TATGAGAGCCAGTGTAAGACCATGTTAGG-ACATGGCATCGGCATCTA
* * * * * * * * *
24513568 TATGATATCTAATGTAAGACCATGTCTGGGATATGGCATAGGCCTCGA
1 TATGAGAGCCAGTGTAAGACCATGT-TAGGACATGGCATCGGCATCTA
* * ** * *
24513616 CATGTGAGATAGTGTAAGACCATGTTTAGAACATGGCATCGGCACCGATA
1 TATGAGAGCCAGTGTAAGACCATG-TTAGGACATGGCATCGGCATC--TA
* *
24513666 TATGAAAGCCAGTGT-AGACCATGTTTGGGACATGGCATC
1 TATGAGAGCCAGTGTAAGACCATG-TTAGGACATGGCATC
24513705 AGCTTTTACC
Statistics
Matches: 175, Mismatches: 52, Indels: 11
0.74 0.22 0.05
Matches are distributed among these distances:
47 3 0.02
48 132 0.75
49 29 0.17
50 11 0.06
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (47 bp):
TATGAGAGCCAGTGTAAGACCATGTTAGGACATGGCATCGGCATCTA
Found at i:24513592 original size:96 final size:96
Alignment explanation
Indices: 24513425--24513703 Score: 353
Period size: 96 Copynumber: 2.9 Consensus size: 96
24513415 TACTAGGGTT
* *
24513425 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATCGCATCGGCATTTATATGAGAGCTAGTGTAAG
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTATATGAGAGCTAATGTAAG
* *
24513490 ATCATGTCTAGGACATGGCATCGACCCCGAC
66 ACCATGTCTAGGACATGGCATAGACCCCGAC
* *
24513521 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTATATGATATCTAATGTAAG
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTATATGAGAGCTAATGTAAG
* * * *
24513586 ACCATGTCTGGGATATGGCATAGGCCTCGAC
66 ACCATGTCTAGGACATGGCATAGACCCCGAC
** * ** * * *
24513617 ATGTGAGATAGTGTAAGACCATGTTTAGAACATGGCATCGGCACCGATATATGAAAGCCAGTGT-
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCA--TTTATATGAGAGCTAATGTA
* *
24513681 AGACCATGTTTGGGACATGGCAT
64 AGACCATGTCTAGGACATGGCAT
24513704 CAGCTTTTAC
Statistics
Matches: 160, Mismatches: 21, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
96 126 0.79
97 21 0.13
98 13 0.08
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (96 bp):
ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTATATGAGAGCTAATGTAAG
ACCATGTCTAGGACATGGCATAGACCCCGAC
Found at i:24516813 original size:64 final size:64
Alignment explanation
Indices: 24516706--24516831 Score: 198
Period size: 64 Copynumber: 2.0 Consensus size: 64
24516696 CGGATTACCT
* *
24516706 TCTGGGCTAAATCCATAATGCACATGTATTCTCCGGGAAGCTCAATCATCCAAAGGAACACCCG
1 TCTGGGCTAAATCCATAATGCACAAGTATTCTCCAGGAAGCTCAATCATCCAAAGGAACACCCG
* ** *
24516770 TCTGGGCTAAATCTATAATGCACAAGTATTCTTTAGGAGGCTCAATCATCCAAAGGAACACC
1 TCTGGGCTAAATCCATAATGCACAAGTATTCTCCAGGAAGCTCAATCATCCAAAGGAACACC
24516832 TATCCGGGCT
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
64 56 1.00
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (64 bp):
TCTGGGCTAAATCCATAATGCACAAGTATTCTCCAGGAAGCTCAATCATCCAAAGGAACACCCG
Found at i:24520780 original size:39 final size:40
Alignment explanation
Indices: 24520685--24520946 Score: 328
Period size: 39 Copynumber: 6.7 Consensus size: 40
24520675 TTGAATGATG
*
24520685 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
24520723 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
24520764 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
24520803 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGACACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
24520842 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
24520881 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
24520920 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
24520947 AACGAGGAGC
Statistics
Matches: 201, Mismatches: 13, Indels: 17
0.87 0.06 0.07
Matches are distributed among these distances:
39 130 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:24527396 original size:63 final size:64
Alignment explanation
Indices: 24527293--24527434 Score: 198
Period size: 63 Copynumber: 2.2 Consensus size: 64
24527283 CGAATTACCT
* * * *
24527293 GTCTGGGCTAAATCCATAATGTACATGTATTCTTCGGGAGGCTCAATCAT-CAAAGGAACACTC
1 GTCTGGGCTAAATCCATAATGCACATGTATTCTTCAGGAGGCTCAATCATCCAAAAGAACACCC
*
24527356 GTCTGGGCTAAATCCATAATGCACATGTATTCCTT-AGGAGGTTCAATCATCCAAAAGAACACCC
1 GTCTGGGCTAAATCCATAATGCACATGTATT-CTTCAGGAGGCTCAATCATCCAAAAGAACACCC
* *
24527420 GTCCGGGCTAGATCC
1 GTCTGGGCTAAATCC
24527435 CTTTCATAAT
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
63 43 0.61
64 27 0.39
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (64 bp):
GTCTGGGCTAAATCCATAATGCACATGTATTCTTCAGGAGGCTCAATCATCCAAAAGAACACCC
Found at i:24538882 original size:93 final size:93
Alignment explanation
Indices: 24538723--24538893 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
24538713 GGATGGTTGA
* ***
24538723 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCAAACACCCGAACTCGTTGAGT
24538788 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
24538816 GCATCGGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCAAACACCCGAACTCGTTGAGT
24538881 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
24538894 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCAAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:24538896 original size:46 final size:46
Alignment explanation
Indices: 24538724--24538898 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 46
24538714 GATGGTTGAG
* *
24538724 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
** * * *
24538770 TGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A
*
24538815 GGCATCGGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
1 --CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
* *
24538863 CACCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
24538899 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 5 0.05
45 2 0.02
46 62 0.58
47 28 0.26
48 3 0.03
50 6 0.06
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
Found at i:24541656 original size:43 final size:43
Alignment explanation
Indices: 24541585--24541666 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
24541575 GATATATGTG
* *
24541585 GCATTCGAGCTCGTTGAGTGCTTCGAGTTAATTATGGATACGA
1 GCATCCGAGCTCGTTGAGTGCTTCGAGTTAATAATGGATACGA
* *
24541628 GCATCCGAGCTCGTTGAGTG-GTCTGAGTTCATAATGGAT
1 GCATCCGAGCTCGTTGAGTGCTTC-GAGTTAATAATGGAT
24541667 GCGATACATG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 2 0.06
43 32 0.94
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (43 bp):
GCATCCGAGCTCGTTGAGTGCTTCGAGTTAATAATGGATACGA
Found at i:24548183 original size:48 final size:48
Alignment explanation
Indices: 24548124--24548299 Score: 158
Period size: 48 Copynumber: 3.6 Consensus size: 48
24548114 TATGTATGCC
* *
24548124 AGTGTAGGACCATGTTTGGAACATGGCATCGACATTTATATGAGAGCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGACATATATATGAGAGCT
** * ** * *
24548172 AGTGTAAGACCATGTCTACG-ACATGGCATC-AGCCTCGACATGTGAGCT
1 AGTGTAAGACCATGT-TTGGAACATGGCATCGA-CATATATATGAGAGCT
* * * *
24548220 AGTGTAAGACTATGTTTGGAACATAGCATCGACACCAATATATGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGACA--TATATATGAGAGCT
* * *
24548270 AGTGTAAAACCATGTCTGGGACATGGCATC
1 AGTGTAAGACCATGTTTGGAACATGGCATC
24548300 AGCATCTTAC
Statistics
Matches: 98, Mismatches: 24, Indels: 10
0.74 0.18 0.08
Matches are distributed among these distances:
47 3 0.03
48 59 0.60
49 3 0.03
50 33 0.34
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTTTGGAACATGGCATCGACATATATATGAGAGCT
Found at i:24548293 original size:98 final size:96
Alignment explanation
Indices: 24548124--24548302 Score: 259
Period size: 98 Copynumber: 1.8 Consensus size: 96
24548114 TATGTATGCC
* * ** * *
24548124 AGTGTAGGACCATGTTTGGAACATGGCATCGACATTTATATGAGAGCTAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTTTGGAACATAGCATCGACAAATATATGAGAGCCAGTGTAAAACCATGTCT
24548189 ACGACATGGCATCAGCCTCGACATGTGAGCT
66 ACGACATGGCATCAGCCTCGACATGTGAGCT
*
24548220 AGTGTAAGACTATGTTTGGAACATAGCATCGACACCAATATATGAGAGCCAGTGTAAAACCATGT
1 AGTGTAAGACCATGTTTGGAACATAGCATCGACA--AATATATGAGAGCCAGTGTAAAACCATGT
**
24548285 CTGGGACATGGCATCAGC
64 CTACGACATGGCATCAGC
24548303 ATCTTACCCT
Statistics
Matches: 72, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
96 31 0.43
98 41 0.57
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.25
Consensus pattern (96 bp):
AGTGTAAGACCATGTTTGGAACATAGCATCGACAAATATATGAGAGCCAGTGTAAAACCATGTCT
ACGACATGGCATCAGCCTCGACATGTGAGCT
Found at i:24555651 original size:40 final size:40
Alignment explanation
Indices: 24555607--24555913 Score: 429
Period size: 40 Copynumber: 7.7 Consensus size: 40
24555597 CCAGCATGAT
* * * * *
24555607 TGCTCTTCGGGACCTAGCCCGGATATAACACCAACACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
24555647 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
24555687 TGCTCTTCAGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
24555727 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
24555767 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
24555807 TGCTCTTCGGGACTTAGCCCGGATACAACACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
**
24555847 CACTCTTCGGGACTTAG-CCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
24555886 TGCTCTTCGGGACTTAGCCCGGAT-CATC
1 TGCTCTTCGGGACTTAGCCCGGATACATC
24555914 GTCGAGACCT
Statistics
Matches: 237, Mismatches: 29, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
39 39 0.16
40 198 0.84
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:24556036 original size:38 final size:38
Alignment explanation
Indices: 24555967--24556041 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
24555957 GAATTTTAAT
*
24555967 CCGGACATAATCTCTGTACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
* *
24556005 CCGGACATAATCTCT-TCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTGT-ACATAGCCAGCGGGTCTTTA
24556042 AACTCGGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (38 bp):
CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
Found at i:24558535 original size:47 final size:47
Alignment explanation
Indices: 24558472--24558767 Score: 421
Period size: 47 Copynumber: 6.3 Consensus size: 47
24558462 CCCTTCGGGA
* * *
24558472 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * *
24558519 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
24558566 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * *
24558613 CTTATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * *
24558660 CCTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
24558707 CCTATCACATATATATATACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCACTCGGC
*
24558756 CCTATCACATAT
1 CTTATCACATAT
24558768 TTATACTTGT
Statistics
Matches: 230, Mismatches: 17, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
47 186 0.81
49 44 0.19
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
Found at i:24561437 original size:40 final size:40
Alignment explanation
Indices: 24561360--24561537 Score: 200
Period size: 40 Copynumber: 4.5 Consensus size: 40
24561350 AAACCAAGTA
* * *
24561360 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTACCCCGGATATAG-TAACTCGCACAAATG
* **
24561399 CCTTTGGGACTTACCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTACCCCGGATATAGTAACTCGCACAAATG
* *
24561439 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTACCCCGGATATAGTAACTCGCACAAATG
* * * *
24561479 CCTTCAGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTACCCCGGATA-TAGTAACTCGCACAAATG
24561519 CCTTCGGGACTTAGCCCCG
1 CCTTCGGGACTTA-CCCCG
24561538 TTATCATCCG
Statistics
Matches: 119, Mismatches: 16, Indels: 6
0.84 0.11 0.04
Matches are distributed among these distances:
39 13 0.11
40 102 0.86
41 4 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTACCCCGGATATAGTAACTCGCACAAATG
Found at i:24569564 original size:40 final size:40
Alignment explanation
Indices: 24569504--24569680 Score: 225
Period size: 40 Copynumber: 4.4 Consensus size: 40
24569494 AACCAAGTAA
* * *
24569504 CTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATGC
1 CTTCGGGACTTACCCCGGATATAG-TAACTCGCACAAATGC
**
24569543 CTTCGGGACTTACCCCGGATATAGTAGTTCGCACAAATGC
1 CTTCGGGACTTACCCCGGATATAGTAACTCGCACAAATGC
*
24569583 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTACCCCGGATATAGTAACTCGCACAAATGC
* * *
24569623 CTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATGC
1 CTTCGGGACTTACCCCGGATA-TAGTAACTCGCACAAATGC
24569663 CTTCGGGACTTAGCCCCG
1 CTTCGGGACTTA-CCCCG
24569681 TTATCATCCG
Statistics
Matches: 123, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
39 13 0.11
40 106 0.86
41 4 0.03
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTACCCCGGATATAGTAACTCGCACAAATGC
Found at i:24574600 original size:13 final size:13
Alignment explanation
Indices: 24574575--24574608 Score: 59
Period size: 13 Copynumber: 2.5 Consensus size: 13
24574565 CTACTCAAAA
24574575 CTTACTCTATATGC
1 CTTACT-TATATGC
24574589 CTTACTTATATGC
1 CTTACTTATATGC
24574602 CTTACTT
1 CTTACTT
24574609 CTATAAACAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 14 0.70
14 6 0.30
ACGTcount: A:0.21, C:0.26, G:0.06, T:0.47
Consensus pattern (13 bp):
CTTACTTATATGC
Found at i:24583174 original size:43 final size:43
Alignment explanation
Indices: 24583113--24583339 Score: 237
Period size: 43 Copynumber: 5.3 Consensus size: 43
24583103 GTGCCACTAT
* * *
24583113 ACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTACCAGAA
1 ACGCCACTAAAGAACATGACCTTTAGCGGCGCTTTTCCCAAAA
* * *
24583156 ACGCCACTAAAGAACATGACCTTTTGTGGCGCTTTTCCCAGAA
1 ACGCCACTAAAGAACATGACCTTTAGCGGCGCTTTTCCCAAAA
* * *
24583199 ACGCCGCTAAACAACATGACCTTTAGCGGCGCTTTCCCCAAAA
1 ACGCCACTAAAGAACATGACCTTTAGCGGCGCTTTTCCCAAAA
* * * *
24583242 AC-ACAGCTAAAGAACATGATCTTTAACGGCACTTTCTCCTC--AA
1 ACGCCA-CTAAAGAACATGACCTTTAGCGGCGCTTT-TCC-CAAAA
* * * *
24583285 ACGCCGCTAAAG-ACATCACCTTTAGCGACGCTTTCCCCAAAA
1 ACGCCACTAAAGAACATGACCTTTAGCGGCGCTTTTCCCAAAA
*
24583327 ACACCACTAAAGA
1 ACGCCACTAAAGA
24583340 CCATATCAAT
Statistics
Matches: 150, Mismatches: 27, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
40 1 0.01
41 2 0.01
42 30 0.20
43 113 0.75
44 3 0.02
45 1 0.01
ACGTcount: A:0.32, C:0.31, G:0.16, T:0.21
Consensus pattern (43 bp):
ACGCCACTAAAGAACATGACCTTTAGCGGCGCTTTTCCCAAAA
Found at i:24583258 original size:86 final size:84
Alignment explanation
Indices: 24583113--24583339 Score: 269
Period size: 86 Copynumber: 2.6 Consensus size: 84
24583103 GTGCCACTAT
** * *
24583113 ACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTACCAGAAACGCCACTAAAGAACATGACCT
1 ACGCCGCTAAA-AACATGACCTTTAGCGGCGCTTTCCCCAAAAAC-ACACTAAAGAACATGACCT
*** *
24583178 TTTGTGGCGCTTT-TCC-CAGAA
64 TTAACGGCACTTTCTCCTC--AA
*
24583199 ACGCCGCTAAACAACATGACCTTTAGCGGCGCTTTCCCCAAAAACACAGCTAAAGAACATGATCT
1 ACGCCGCTAAA-AACATGACCTTTAGCGGCGCTTTCCCCAAAAACACA-CTAAAGAACATGACCT
24583264 TTAACGGCACTTTCTCCTCAA
64 TTAACGGCACTTTCTCCTCAA
* * *
24583285 ACGCCGCTAAAGACATCACCTTTAGCGACGCTTTCCCCAAAAACACCACTAAAGA
1 ACGCCGCTAAAAACATGACCTTTAGCGGCGCTTTCCCCAAAAACA-CACTAAAGA
24583340 CCATATCAAT
Statistics
Matches: 124, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
85 40 0.32
86 80 0.65
87 3 0.02
88 1 0.01
ACGTcount: A:0.32, C:0.31, G:0.16, T:0.21
Consensus pattern (84 bp):
ACGCCGCTAAAAACATGACCTTTAGCGGCGCTTTCCCCAAAAACACACTAAAGAACATGACCTTT
AACGGCACTTTCTCCTCAA
Found at i:24588837 original size:17 final size:18
Alignment explanation
Indices: 24588804--24588837 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
24588794 TATCCCTTAA
24588804 ATAATTTAAATTATATTG
1 ATAATTTAAATTATATTG
24588822 ATAATTTAAA-TATATT
1 ATAATTTAAATTATATT
24588838 AAAATAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (18 bp):
ATAATTTAAATTATATTG
Found at i:24589041 original size:7 final size:7
Alignment explanation
Indices: 24589029--24589077 Score: 62
Period size: 7 Copynumber: 7.0 Consensus size: 7
24589019 TTTCCAATAG
24589029 TAAACCT
1 TAAACCT
24589036 TAAACCT
1 TAAACCT
24589043 TAAACCT
1 TAAACCT
* *
24589050 CAAACCA
1 TAAACCT
*
24589057 TAAACCA
1 TAAACCT
*
24589064 TAAACCA
1 TAAACCT
24589071 TAAACCT
1 TAAACCT
24589078 ATACCCTAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
7 38 1.00
ACGTcount: A:0.49, C:0.31, G:0.00, T:0.20
Consensus pattern (7 bp):
TAAACCT
Found at i:24589048 original size:14 final size:14
Alignment explanation
Indices: 24589029--24589077 Score: 71
Period size: 14 Copynumber: 3.5 Consensus size: 14
24589019 TTTCCAATAG
*
24589029 TAAACCTTAAACCT
1 TAAACCTTAAACCA
*
24589043 TAAACCTCAAACCA
1 TAAACCTTAAACCA
*
24589057 TAAACCATAAACCA
1 TAAACCTTAAACCA
24589071 TAAACCT
1 TAAACCT
24589078 ATACCCTAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 30 1.00
ACGTcount: A:0.49, C:0.31, G:0.00, T:0.20
Consensus pattern (14 bp):
TAAACCTTAAACCA
Found at i:24589085 original size:7 final size:7
Alignment explanation
Indices: 24589029--24589094 Score: 55
Period size: 7 Copynumber: 9.6 Consensus size: 7
24589019 TTTCCAATAG
*
24589029 TAAACCT
1 TAAACCC
*
24589036 TAAACCT
1 TAAACCC
24589043 TAAA-CC
1 TAAACCC
*
24589049 TCAAACCA
1 T-AAACCC
*
24589057 TAAACCA
1 TAAACCC
*
24589064 TAAACCA
1 TAAACCC
24589071 TAAA-CC
1 TAAACCC
*
24589077 TATACCC
1 TAAACCC
24589084 TAAACCC
1 TAAACCC
24589091 TAAA
1 TAAA
24589095 TATATATATT
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
6 6 0.12
7 43 0.84
8 2 0.04
ACGTcount: A:0.48, C:0.32, G:0.00, T:0.20
Consensus pattern (7 bp):
TAAACCC
Found at i:24589092 original size:14 final size:14
Alignment explanation
Indices: 24589029--24589094 Score: 64
Period size: 14 Copynumber: 4.8 Consensus size: 14
24589019 TTTCCAATAG
* *
24589029 TAAACCTTAAACCT
1 TAAACCCTAAACCA
24589043 TAAA-CCTCAAACCA
1 TAAACCCT-AAACCA
*
24589057 TAAACCATAAACCA
1 TAAACCCTAAACCA
* *
24589071 TAAA-CCTATACCC
1 TAAACCCTAAACCA
24589084 TAAACCCTAAA
1 TAAACCCTAAA
24589095 TATATATATT
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
13 12 0.29
14 28 0.67
15 2 0.05
ACGTcount: A:0.48, C:0.32, G:0.00, T:0.20
Consensus pattern (14 bp):
TAAACCCTAAACCA
Found at i:24589279 original size:14 final size:14
Alignment explanation
Indices: 24589262--24589312 Score: 68
Period size: 14 Copynumber: 3.7 Consensus size: 14
24589252 ATAAAACAAA
24589262 AAACCACAAACTCT
1 AAACCACAAACTCT
* *
24589276 AAACCATAAACCCT
1 AAACCACAAACTCT
*
24589290 AAACCAAAAACTCT
1 AAACCACAAACTCT
24589304 AAACC-CAAA
1 AAACCACAAA
24589313 ATAATAAAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
13 3 0.09
14 29 0.91
ACGTcount: A:0.55, C:0.33, G:0.00, T:0.12
Consensus pattern (14 bp):
AAACCACAAACTCT
Found at i:24589320 original size:28 final size:28
Alignment explanation
Indices: 24589255--24589308 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
24589245 CCTAACTATA
* *
24589255 AAACAAAAAACCACAAACTCTAAACCAT
1 AAACAATAAACCAAAAACTCTAAACCAT
**
24589283 AAACCCTAAACCAAAAACTCTAAACC
1 AAACAATAAACCAAAAACTCTAAACC
24589309 CAAAATAATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.57, C:0.31, G:0.00, T:0.11
Consensus pattern (28 bp):
AAACAATAAACCAAAAACTCTAAACCAT
Found at i:24589441 original size:7 final size:7
Alignment explanation
Indices: 24589431--24589464 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
24589421 CCCTATCCCC
24589431 TAAACCA
1 TAAACCA
*
24589438 TAAAACA
1 TAAACCA
*
24589445 TAAAACA
1 TAAACCA
24589452 TAAACCA
1 TAAACCA
24589459 TAAACC
1 TAAACC
24589465 TTTAACCCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.62, C:0.24, G:0.00, T:0.15
Consensus pattern (7 bp):
TAAACCA
Found at i:24590142 original size:41 final size:40
Alignment explanation
Indices: 24590034--24590143 Score: 157
Period size: 40 Copynumber: 2.7 Consensus size: 40
24590024 TTTTTTTTTG
**
24590034 CGGTGTTTTTCAAAAAGCGCCGCTAATGCTTGATCTATAA
1 CGGTGTTTTTCAAAAAGCGCCGCTAATGCTCAATCTATAA
* * *
24590074 CGGCGTTTTTCAAAAAGCGCTGCTAATGCTCAATCTATAG
1 CGGTGTTTTTCAAAAAGCGCCGCTAATGCTCAATCTATAA
*
24590114 TGGTGTTTTTCAAAAAAGCGCCGCTAATGC
1 CGGTGTTTTTC-AAAAAGCGCCGCTAATGC
24590144 CACTAAAGCT
Statistics
Matches: 61, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
40 44 0.72
41 17 0.28
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (40 bp):
CGGTGTTTTTCAAAAAGCGCCGCTAATGCTCAATCTATAA
Found at i:24590527 original size:40 final size:40
Alignment explanation
Indices: 24590468--24590602 Score: 173
Period size: 40 Copynumber: 3.4 Consensus size: 40
24590458 TGGTCAACCA
*
24590468 ATAGCGGCATTTTTCAAAAAGCT-CCGCTAATGCTCGATCTT
1 ATAGCGGCGTTTTTCAAAAAG-TGCCGCTAATGCTCGATC-T
* *
24590509 ATAGCGGCGTTTTTAAAAAAGTGCCACTAATGCTCGATCT
1 ATAGCGGCGTTTTTCAAAAAGTGCCGCTAATGCTCGATCT
* * *
24590549 ATAGCTGCGTTTTTCAAAAAGTGCTGCTAATGCTCGGTCT
1 ATAGCGGCGTTTTTCAAAAAGTGCCGCTAATGCTCGATCT
* *
24590589 ATAGCAGTGTTTTT
1 ATAGCGGCGTTTTT
24590603 GGTCCTAGGG
Statistics
Matches: 83, Mismatches: 10, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
40 49 0.59
41 34 0.41
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (40 bp):
ATAGCGGCGTTTTTCAAAAAGTGCCGCTAATGCTCGATCT
Found at i:24590684 original size:23 final size:23
Alignment explanation
Indices: 24590658--24590800 Score: 87
Period size: 23 Copynumber: 6.2 Consensus size: 23
24590648 AGTTTATCAA
*
24590658 CTCATAAAAGCTTATTGTTTCAG
1 CTCATAAAAGCTTACTGTTTCAG
***
24590681 CTCATTGGAGCTTACTGTTTCAG
1 CTCATAAAAGCTTACTGTTTCAG
***
24590704 CTCATTGGAGCTTACTG-TTCAG
1 CTCATAAAAGCTTACTGTTTCAG
* * *
24590726 CTCGAT-AGAGCTTACCGATTCAG
1 CTC-ATAAAAGCTTACTGTTTCAG
* * *
24590749 CTCGAT-AGAGCTTACCGATTCAG
1 CTC-ATAAAAGCTTACTGTTTCAG
*
24590772 CTCA-ATAGAGCTTACTGTTCATCAG
1 CTCATA-AAAGCTTACTGTT--TCAG
24590797 CTCA
1 CTCA
24590801 GGAGGAGCTT
Statistics
Matches: 106, Mismatches: 8, Indels: 10
0.85 0.06 0.08
Matches are distributed among these distances:
22 18 0.17
23 80 0.75
25 8 0.08
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (23 bp):
CTCATAAAAGCTTACTGTTTCAG
Found at i:24590737 original size:45 final size:44
Alignment explanation
Indices: 24590666--24590817 Score: 144
Period size: 45 Copynumber: 3.3 Consensus size: 44
24590656 AACTCATAAA
* * *
24590666 AGCTTATTGTTTCAGCTCATTGGAGCTTACTGTTTCAGCTCATTGG
1 AGCTTACTGATTCAGCTCA-TAGAGCTTACTGTTTCAGCTCA-TGG
* * *
24590712 AGCTTACTG-TTCAGCTCGATAGAGCTTACCGATTCAGCTCGATAG
1 AGCTTACTGATTCAGCTC-ATAGAGCTTACTGTTTCAGCTC-ATGG
* *
24590757 AGCTTACCGATTCAGCTCAATAGAGCTTACTGTTCATCAGCTCAGGAGG
1 AGCTTACTGATTCAGCTC-ATAGAGCTTACTGTT--TCAGCTCA--TGG
24590806 AGCTTACTGATT
1 AGCTTACTGATT
24590818 ATGGCTCGAA
Statistics
Matches: 87, Mismatches: 12, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
45 36 0.41
46 31 0.36
47 1 0.01
48 7 0.08
49 12 0.14
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.33
Consensus pattern (44 bp):
AGCTTACTGATTCAGCTCATAGAGCTTACTGTTTCAGCTCATGG
Found at i:24592492 original size:47 final size:47
Alignment explanation
Indices: 24592434--24592602 Score: 213
Period size: 47 Copynumber: 3.6 Consensus size: 47
24592424 ATCCATAAGT
24592434 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
* * * * *
24592481 GAACTCGGACTCAACTCAACAAGTTCGGA---C-A-TTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--TTCA-C
*
24592527 GAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
24592574 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
24592603 CATTCGCATC
Statistics
Matches: 101, Mismatches: 12, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 27 0.27
47 56 0.55
48 2 0.02
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.24
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:24592497 original size:93 final size:93
Alignment explanation
Indices: 24592388--24592651 Score: 456
Period size: 93 Copynumber: 2.8 Consensus size: 93
24592378 GCCCCTAAGT
* * * * *
24592388 GAACTCAGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
24592453 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
24592481 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
24592546 CGAGTTTGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
24592574 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
24592639 TGAGTTCGGATGC
66 CGAGTTCGGATGC
24592652 TCAACCATCC
Statistics
Matches: 161, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 161 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:24592648 original size:46 final size:46
Alignment explanation
Indices: 24592383--24592648 Score: 242
Period size: 46 Copynumber: 5.7 Consensus size: 46
24592373 AACCCGCCCC
* * * * *
24592383 TAAGTGAACTCAGACTCAACTCAATGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
24592429 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* * *
24592477 TCA-CGAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* * *
24592522 TAAGTGAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
24592570 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
24592615 TAAGTGAACTCGGACTCAACTCAATGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
24592649 TGCTCAACCA
Statistics
Matches: 176, Mismatches: 26, Indels: 36
0.74 0.11 0.15
Matches are distributed among these distances:
42 4 0.02
43 8 0.05
44 2 0.01
45 4 0.02
46 85 0.48
47 56 0.32
48 4 0.02
49 2 0.01
50 7 0.04
51 4 0.02
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.24
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:24593105 original size:30 final size:30
Alignment explanation
Indices: 24593071--24593130 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
24593061 ATTTAATACG
*
24593071 AACTTTAGAAAAATTACACTTTTGCCCCTA
1 AACTTTAGAAAAATTACACTTTTACCCCTA
* * *
24593101 AACTTTTGCATAATTACACTTTTACCCCTA
1 AACTTTAGAAAAATTACACTTTTACCCCTA
24593131 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAGAAAAATTACACTTTTACCCCTA
Found at i:24594485 original size:35 final size:36
Alignment explanation
Indices: 24594445--24594531 Score: 95
Period size: 35 Copynumber: 2.4 Consensus size: 36
24594435 CAGTCAGTAA
* * *
24594445 TATTCATTAACAATCAGTCAATCAG-AACAATTATT
1 TATTCAATAACAATCAGTCAATCAGTAACAATCAAT
* * * *
24594480 TATTCAGTAACAGTCAGTTATTCAGTAACAATCAAT
1 TATTCAATAACAATCAGTCAATCAGTAACAATCAAT
*
24594516 TATTCAATAATAATCA
1 TATTCAATAACAATCA
24594532 ATTATTCATT
Statistics
Matches: 42, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
35 21 0.50
36 21 0.50
ACGTcount: A:0.43, C:0.16, G:0.07, T:0.34
Consensus pattern (36 bp):
TATTCAATAACAATCAGTCAATCAGTAACAATCAAT
Found at i:24594500 original size:18 final size:18
Alignment explanation
Indices: 24594445--24594552 Score: 101
Period size: 18 Copynumber: 6.1 Consensus size: 18
24594435 CAGTCAGTAA
* *
24594445 TATTCATTAACAATCAGT
1 TATTCAGTAACAATCAAT
* * * *
24594463 CAATCAG-AACAATTATT
1 TATTCAGTAACAATCAAT
* *
24594480 TATTCAGTAACAGTCAGT
1 TATTCAGTAACAATCAAT
24594498 TATTCAGTAACAATCAAT
1 TATTCAGTAACAATCAAT
* *
24594516 TATTCAATAATAATCAAT
1 TATTCAGTAACAATCAAT
* *
24594534 TATTCATTATCAATCAAT
1 TATTCAGTAACAATCAAT
24594552 T
1 T
24594553 GATCTGTTAT
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
17 13 0.18
18 59 0.82
ACGTcount: A:0.42, C:0.16, G:0.06, T:0.37
Consensus pattern (18 bp):
TATTCAGTAACAATCAAT
Found at i:24596249 original size:22 final size:24
Alignment explanation
Indices: 24596207--24596253 Score: 71
Period size: 22 Copynumber: 2.0 Consensus size: 24
24596197 TGTATTACAA
24596207 ATGTATGTACATTATTTATCACAC
1 ATGTATGTACATTATTTATCACAC
*
24596231 ATGTAT-TTCATT-TTTATCACAC
1 ATGTATGTACATTATTTATCACAC
24596253 A
1 A
24596254 CTTGGCACTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 11 0.50
23 5 0.23
24 6 0.27
ACGTcount: A:0.32, C:0.17, G:0.06, T:0.45
Consensus pattern (24 bp):
ATGTATGTACATTATTTATCACAC
Found at i:24597318 original size:43 final size:43
Alignment explanation
Indices: 24597256--24597338 Score: 148
Period size: 43 Copynumber: 1.9 Consensus size: 43
24597246 CACGGGCGTG
*
24597256 TGTCTCAGCCGTGTACGACATACGGTCATGTTGCACAGCCGTA
1 TGTCTCAGCCGTGTACGACATACGGTCATATTGCACAGCCGTA
*
24597299 TGTCTCAGCCGTGTGCGACATACGGTCATATTGCACAGCC
1 TGTCTCAGCCGTGTACGACATACGGTCATATTGCACAGCC
24597339 ATGTGTCCCT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.20, C:0.29, G:0.25, T:0.25
Consensus pattern (43 bp):
TGTCTCAGCCGTGTACGACATACGGTCATATTGCACAGCCGTA
Found at i:24612942 original size:40 final size:40
Alignment explanation
Indices: 24612887--24613076 Score: 251
Period size: 40 Copynumber: 4.8 Consensus size: 40
24612877 CGGATGATAA
24612887 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
*
24612927 CCGGGCTAAGTCCCGAAGGCATTTTTGCGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
* * * *
24612967 -CTGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
* * *
24613005 CCGGGCTATGTCCCGAAGGCATTGGTGCGAGTTACT-ATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-T
* * *
24613045 CCGGGCTATGTCCCGAACGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
24613077 ACCTATATCT
Statistics
Matches: 131, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
38 25 0.19
39 16 0.12
40 90 0.69
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
Found at i:24613027 original size:78 final size:79
Alignment explanation
Indices: 24612890--24613069 Score: 245
Period size: 78 Copynumber: 2.3 Consensus size: 79
24612880 ATGATAACCG
* * * **
24612890 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTTTGC
1 GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGCTAAGTCCCGAAGGCATTGGTGC
24612955 GAGTTACTAATTCT
66 GAGTTACTAATTCT
*
24612969 GGCTAAG-CCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGCTATGTCCCGAAGGCATTGGTGC
1 GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGCTAAGTCCCGAAGGCATTGGTGC
** *
24613033 GAGTTACTATAACCG
66 GAGTTACTA-ATTCT
* *
24613048 GGCTATGTCCCGAACGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
24613070 AGCGAGTACC
Statistics
Matches: 88, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
78 60 0.68
79 15 0.17
80 13 0.15
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (79 bp):
GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGCTAAGTCCCGAAGGCATTGGTGC
GAGTTACTAATTCT
Found at i:24621006 original size:39 final size:39
Alignment explanation
Indices: 24620923--24621108 Score: 236
Period size: 39 Copynumber: 4.8 Consensus size: 39
24620913 CGGATGATAA
24620923 CCGGGCTAAGT-CCGAAGGCATTTGTG-GAGTTACTAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
24620960 TCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
24620999 TCTGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACCAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAAT
* *
24621038 CCGGGCTAAGT-CCGAAGGCATTGGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AT
* * *
24621077 CCGGGCTATGTCCCGAACGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
24621109 ACCTATATCC
Statistics
Matches: 130, Mismatches: 13, Indels: 9
0.86 0.09 0.06
Matches are distributed among these distances:
37 10 0.08
38 39 0.30
39 64 0.49
40 17 0.13
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:24621069 original size:77 final size:76
Alignment explanation
Indices: 24620926--24621073 Score: 226
Period size: 77 Copynumber: 1.9 Consensus size: 76
24620916 ATGATAACCG
* * * * *
24620926 GGCTAAGTCCGAAGGCATTTGTGGAGTTACTAATTCGGGCTAAGTCCCGAAGGCATTTGTGTGAG
1 GGCTAAGCCCGAAGGCATTTGTGGAGTTACAAATCCGGGCTAAGTCCCGAAGGCATTGGTGCGAG
24620991 TTACTAATTCT
66 TTACTAATTCT
24621002 GGCTAAGCCCGAAGGCATTTGTGCGAGTTACCAAATCCGGGCTAAGT-CCGAAGGCATTGGTGCG
1 GGCTAAGCCCGAAGGCATTTGTG-GAGTTA-CAAATCCGGGCTAAGTCCCGAAGGCATTGGTGCG
24621066 AGTTACTA
64 AGTTACTA
24621074 TAACCGGGCT
Statistics
Matches: 65, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
76 22 0.34
77 29 0.45
78 14 0.22
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (76 bp):
GGCTAAGCCCGAAGGCATTTGTGGAGTTACAAATCCGGGCTAAGTCCCGAAGGCATTGGTGCGAG
TTACTAATTCT
Found at i:24621134 original size:79 final size:77
Alignment explanation
Indices: 24620921--24621108 Score: 218
Period size: 77 Copynumber: 2.4 Consensus size: 77
24620911 TTCGGATGAT
* * * * * *
24620921 AACCGGGCTAAGTCCGAAGGCATTTGTG-GAGTTA-CTAATTCGGGCTAAGTCCCGAAGGCATTT
1 AACCGGGCTAAGCCCGAACGCATTTGAGCGAGTTACCAAATCCGGGCTAAGT-CCGAAGGCATTG
*
24620984 GTGTGAGTTACTA
65 GTGCGAGTTACTA
** * * *
24620997 ATTCTGGCTAAGCCCGAAGGCATTTGTGCGAGTTACCAAATCCGGGCTAAGTCCGAAGGCATTGG
1 AACCGGGCTAAGCCCGAACGCATTTGAGCGAGTTACCAAATCCGGGCTAAGTCCGAAGGCATTGG
24621062 TGCGAGTTACTA
66 TGCGAGTTACTA
*
24621074 TAACCGGGCTATGTCCCGAACGCATTTGAGCGAGT
1 -AACCGGGCTAAG-CCCGAACGCATTTGAGCGAGT
24621109 ACCTATATCC
Statistics
Matches: 94, Mismatches: 14, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
76 24 0.26
77 29 0.31
78 22 0.23
79 19 0.20
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (77 bp):
AACCGGGCTAAGCCCGAACGCATTTGAGCGAGTTACCAAATCCGGGCTAAGTCCGAAGGCATTGG
TGCGAGTTACTA
Found at i:24622895 original size:25 final size:25
Alignment explanation
Indices: 24622867--24622914 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
24622857 TAAGCGAGAC
*
24622867 ATATCAGGAAGCTCAAAAAGAGCCT
1 ATATCAAGAAGCTCAAAAAGAGCCT
* *
24622892 ATATCAAGACGCTCATAAAGAGC
1 ATATCAAGAAGCTCAAAAAGAGC
24622915 TGCGTTTGTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.44, C:0.21, G:0.19, T:0.17
Consensus pattern (25 bp):
ATATCAAGAAGCTCAAAAAGAGCCT
Found at i:24625080 original size:26 final size:26
Alignment explanation
Indices: 24625051--24625108 Score: 75
Period size: 26 Copynumber: 2.2 Consensus size: 26
24625041 ACCCTCAGCT
24625051 AAATTTTGAT-GATTTTACCCCT-AGTA
1 AAATTTTG-TCGATTTTACCCCTGA-TA
*
24625077 AAATTTTGTCGATTTTGCCCCTGATA
1 AAATTTTGTCGATTTTACCCCTGATA
24625103 AAATTT
1 AAATTT
24625109 CAAGAAAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
25 1 0.03
26 27 0.93
27 1 0.03
ACGTcount: A:0.29, C:0.16, G:0.12, T:0.43
Consensus pattern (26 bp):
AAATTTTGTCGATTTTACCCCTGATA
Found at i:24628366 original size:13 final size:14
Alignment explanation
Indices: 24628350--24628409 Score: 52
Period size: 13 Copynumber: 4.2 Consensus size: 14
24628340 GTGTATGACA
24628350 CACGGTTATGT-TC
1 CACGGTTATGTGTC
* *
24628363 CACGGCTGTTTGTGAC
1 CACGG-T-TATGTGTC
24628379 ACACGGTTATGT-TC
1 -CACGGTTATGTGTC
*
24628393 CACGGTCATGTGTC
1 CACGGTTATGTGTC
24628407 CAC
1 CAC
24628410 TGGTGTTGAA
Statistics
Matches: 37, Mismatches: 5, Indels: 9
0.73 0.10 0.18
Matches are distributed among these distances:
13 15 0.41
14 7 0.19
15 8 0.22
16 2 0.05
17 5 0.14
ACGTcount: A:0.17, C:0.27, G:0.25, T:0.32
Consensus pattern (14 bp):
CACGGTTATGTGTC
Found at i:24631661 original size:48 final size:48
Alignment explanation
Indices: 24631605--24632096 Score: 689
Period size: 48 Copynumber: 10.0 Consensus size: 48
24631595 TTGATGCATA
*
24631605 AGATATGTATATGTGGTAAAGCTGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* *
24631653 AGATATGTATATGTGGTAAAGCCGAATGGCTAATATGGAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* *
24631701 AGATGTGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG----A-A-ATATGTATG
24631755 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* *
24631803 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG--A-A-ATATGTATG
** * *
24631855 AGATATGTATATGTGGTAAAGTTGAATGGTTAATGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
24631905 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* * *
24631953 AGATATGCATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATG
* *
24632003 AGATATGTATATGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
24632051 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
24632097 GGCGATGTGT
Statistics
Matches: 402, Mismatches: 28, Indels: 28
0.88 0.06 0.06
Matches are distributed among these distances:
47 1 0.00
48 218 0.54
49 7 0.02
50 86 0.21
51 4 0.01
52 41 0.10
53 1 0.00
54 44 0.11
ACGTcount: A:0.36, C:0.05, G:0.26, T:0.32
Consensus pattern (48 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:24631781 original size:102 final size:96
Alignment explanation
Indices: 24631605--24632096 Score: 689
Period size: 102 Copynumber: 5.0 Consensus size: 96
24631595 TTGATGCATA
*
24631605 AGATATGTATATGTGGTAAAGCTGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
* *
24631670 AAAGCCGAATGGCTAATATGGAATATGTATG
66 AAAGCCGAATGGCTAATGTGAAATATGTATG
* *
24631701 AGATGTGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATATGTATGAGATATGTATA
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG----A-A-ATATGTATGAGATATGTATA
24631766 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
60 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* *
24631803 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATATATGAGATATGTATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG--A-A-ATATGTATGAGATATGTATATG
** * *
24631868 TGGTAAAGTTGAATGGTTAATGTGAAATATATATATG
62 TGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
*
24631905 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
* *
24631970 AAAGCTGAATGG-TCAATGTGAAATATATATATG
66 AAAGCCGAATGGCT-AATGTG-AA-ATATGTATG
* *
24632003 AGATATGTATATGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
*
24632068 AAAGCCGAATGGCTAGTGTGAAATATGTA
66 AAAGCCGAATGGCTAATGTGAAATATGTA
24632097 GGCGATGTGT
Statistics
Matches: 364, Mismatches: 22, Indels: 20
0.90 0.05 0.05
Matches are distributed among these distances:
96 40 0.11
97 3 0.01
98 132 0.36
99 2 0.01
100 49 0.13
101 3 0.01
102 135 0.37
ACGTcount: A:0.36, C:0.05, G:0.26, T:0.32
Consensus pattern (96 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
AAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:24631898 original size:150 final size:148
Alignment explanation
Indices: 24631605--24632096 Score: 730
Period size: 150 Copynumber: 3.3 Consensus size: 148
24631595 TTGATGCATA
*
24631605 AGATATGTATATGTGGTAAAGCTGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
* * *
24631670 AAAGCCGAATGGCTAATATGG---A-ATATGTATGAGATGTGTATATGTGGTAAAGCCGAATGGC
66 AAAGCCGAATGGCT-A-ATGGAAAATATATATATGAGATATGTATATGTGGTAAAGTCGAATGGC
*
24631731 TAATGCGAAATATATATATGTATG
129 TAATGTG--A-A-ATATATGTATG
24631755 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
* *
24631820 AAAGCCGAATGGCTAATGCGAAATATATATATATGAGATATGTATATGTGGTAAAGTTGAATGGT
66 AAAGCCGAATGGCTAATG-GAAA-ATATATATATGAGATATGTATATGTGGTAAAGTCGAATGGC
*
24631885 TAATGTGAAATATATATATG
129 TAATGTGAAATATATGTATG
*
24631905 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
*
24631970 AAAGCTGAATGG-TCAATGTG-AAATATATATATGAGATATGTATATGTGGTAAAGTCGAATGGC
66 AAAGCCGAATGGCT-AATG-GAAAATATATATATGAGATATGTATATGTGGTAAAGTCGAATGGC
*
24632033 TAGTGTG-AA-ATATGTATG
129 TAATGTGAAATATATGTATG
*
24632051 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
24632097 GGCGATGTGT
Statistics
Matches: 319, Mismatches: 16, Indels: 18
0.90 0.05 0.05
Matches are distributed among these distances:
146 53 0.17
147 2 0.01
148 48 0.15
149 5 0.02
150 168 0.53
151 1 0.00
152 1 0.00
153 1 0.00
154 40 0.13
ACGTcount: A:0.36, C:0.05, G:0.26, T:0.32
Consensus pattern (148 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
AAAGCCGAATGGCTAATGGAAAATATATATATGAGATATGTATATGTGGTAAAGTCGAATGGCTA
ATGTGAAATATATGTATG
Found at i:24632350 original size:37 final size:37
Alignment explanation
Indices: 24632242--24632350 Score: 164
Period size: 37 Copynumber: 2.9 Consensus size: 37
24632232 GGAAATATAT
* * *
24632242 TCCGGGTAAGACTCGATGACCACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
24632279 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
24632316 TTCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
24632351 CATCTGAGCT
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:24634500 original size:24 final size:24
Alignment explanation
Indices: 24634473--24634537 Score: 71
Period size: 24 Copynumber: 2.7 Consensus size: 24
24634463 GTCATTATAT
24634473 ATTTTATATTATTATTAAATT-TTA
1 ATTTTATATT-TTATTAAATTGTTA
* *
24634497 ATTTATAAATTTTAAT-AATTGTTA
1 ATTT-TATATTTTATTAAATTGTTA
24634521 ATTTTATATCTTTATTA
1 ATTTTATAT-TTTATTA
24634538 TACATAAATA
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
23 8 0.24
24 20 0.61
25 5 0.15
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.60
Consensus pattern (24 bp):
ATTTTATATTTTATTAAATTGTTA
Found at i:24637376 original size:58 final size:59
Alignment explanation
Indices: 24637314--24637440 Score: 150
Period size: 59 Copynumber: 2.2 Consensus size: 59
24637304 TTTGGCATCC
* * *
24637314 TTTTCATATTAGGGATT-AACTTTTTTTTATT-CAAGTTAGATCTTAAACTTGACAATTA
1 TTTTCATATTACGGATTCAACTTTTTTTT-TTGCAAGTTAGACCCTAAACTTGACAATTA
** * * *
24637372 TTTTCGCATTACGGCTTCAACTTTTTTTTTTGCAAGTTAGACCCTGAATTTGACAATTA
1 TTTTCATATTACGGATTCAACTTTTTTTTTTGCAAGTTAGACCCTAAACTTGACAATTA
*
24637431 TTCTCATATT
1 TTTTCATATT
24637441 GAGGCTTTTG
Statistics
Matches: 56, Mismatches: 11, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
58 15 0.27
59 41 0.73
ACGTcount: A:0.27, C:0.15, G:0.11, T:0.47
Consensus pattern (59 bp):
TTTTCATATTACGGATTCAACTTTTTTTTTTGCAAGTTAGACCCTAAACTTGACAATTA
Found at i:24638112 original size:67 final size:67
Alignment explanation
Indices: 24638023--24638163 Score: 264
Period size: 67 Copynumber: 2.1 Consensus size: 67
24638013 CACTAACTCC
* *
24638023 AATCAATATGCACAAATATTTTTATATATATTAGATTTGCGAGATATTATTTGTTTAAAACATTA
1 AATCCATATCCACAAATATTTTTATATATATTAGATTTGCGAGATATTATTTGTTTAAAACATTA
24638088 GT
66 GT
24638090 AATCCATATCCACAAATATTTTTATATATATTAGATTTGCGAGATATTATTTGTTTAAAACATTA
1 AATCCATATCCACAAATATTTTTATATATATTAGATTTGCGAGATATTATTTGTTTAAAACATTA
24638155 GT
66 GT
24638157 AATCCAT
1 AATCCAT
24638164 CTATATTTTA
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 72 1.00
ACGTcount: A:0.38, C:0.10, G:0.09, T:0.43
Consensus pattern (67 bp):
AATCCATATCCACAAATATTTTTATATATATTAGATTTGCGAGATATTATTTGTTTAAAACATTA
GT
Found at i:24649235 original size:34 final size:34
Alignment explanation
Indices: 24649151--24649236 Score: 145
Period size: 36 Copynumber: 2.5 Consensus size: 34
24649141 ATTCAATACA
24649151 AATATTAGTTAAGTATATAATCTGCCAAAGTCAT
1 AATATTAGTTAAGTATATAATCTGCCAAAGTCAT
*
24649185 ACTATTATAGTTAAGTATATAATCTGCCAAAGTCAT
1 AATA-T-TAGTTAAGTATATAATCTGCCAAAGTCAT
24649221 AATATTAGTTAAGTAT
1 AATATTAGTTAAGTAT
24649237 CAAACCTGGT
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
34 14 0.29
35 2 0.04
36 32 0.67
ACGTcount: A:0.41, C:0.10, G:0.12, T:0.37
Consensus pattern (34 bp):
AATATTAGTTAAGTATATAATCTGCCAAAGTCAT
Found at i:24650624 original size:7 final size:7
Alignment explanation
Indices: 24650612--24650637 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
24650602 AGAAATGGAA
24650612 AAAAAAT
1 AAAAAAT
24650619 AAAAAAT
1 AAAAAAT
24650626 AAAAAAT
1 AAAAAAT
24650633 AAAAA
1 AAAAA
24650638 GAAGAAGAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAAAT
Found at i:24654285 original size:27 final size:27
Alignment explanation
Indices: 24654255--24654432 Score: 171
Period size: 27 Copynumber: 6.6 Consensus size: 27
24654245 ATATTGAGCC
* *
24654255 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
24654282 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
24654309 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
24654337 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
24654364 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
24654391 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
24654418 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
24654433 GTACAATTTA
Statistics
Matches: 127, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
27 102 0.80
28 25 0.20
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:24654394 original size:82 final size:81
Alignment explanation
Indices: 24654276--24654431 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
24654266 TGCTATATAA
* * *
24654276 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTC-GAATCGCA
24654341 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
24654358 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCA
24654422 CACTTAGTGC
65 CACTTAGTGC
24654432 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 19 0.29
82 47 0.71
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:24662329 original size:27 final size:27
Alignment explanation
Indices: 24662299--24662476 Score: 171
Period size: 27 Copynumber: 6.6 Consensus size: 27
24662289 ATATTGAGCC
* *
24662299 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
24662326 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
24662353 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
24662381 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
24662408 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
24662435 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
24662462 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
24662477 GTACAATTTA
Statistics
Matches: 127, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
27 102 0.80
28 25 0.20
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:24662438 original size:82 final size:81
Alignment explanation
Indices: 24662320--24662475 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
24662310 TGCTATATAA
* * *
24662320 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTC-GAATCGCA
24662385 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
24662402 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCA
24662466 CACTTAGTGC
65 CACTTAGTGC
24662476 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 19 0.29
82 47 0.71
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:24670115 original size:27 final size:27
Alignment explanation
Indices: 24670075--24670173 Score: 126
Period size: 27 Copynumber: 3.6 Consensus size: 27
24670065 AGGAAGCGTC
*
24670075 CTGGTGGCTATGCCACAAATATCTGAT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* *
24670102 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* *
24670129 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAAATATCTG-AT
* *
24670157 CTGGTGACTCTGTCACA
1 CTGGTGGCTCTGCCACA
24670174 TCTGTTTTGT
Statistics
Matches: 61, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 46 0.75
28 15 0.25
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.33
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAAATATCTGAT
Found at i:24678021 original size:27 final size:27
Alignment explanation
Indices: 24677981--24678092 Score: 118
Period size: 27 Copynumber: 4.1 Consensus size: 27
24677971 AGGAGGCGTC
* *
24677981 CTGGTGGCTATGCCATAAATATCTGAT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* *
24678008 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* *
24678035 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAAATATCTG-AT
* * * *
24678063 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAAATATCTGAT
24678089 CTGG
1 CTGG
24678093 CAGCCGTGCT
Statistics
Matches: 73, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
26 5 0.07
27 53 0.73
28 15 0.21
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAAATATCTGAT
Found at i:24678085 original size:54 final size:54
Alignment explanation
Indices: 24677981--24678092 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
24677971 AGGAGGCGTC
* *
24677981 CTGGTGGCTATGCCATAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * * *
24678035 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
24678089 CTGG
1 CTGG
24678093 CAGCCGTGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:24722668 original size:6 final size:6
Alignment explanation
Indices: 24722652--24722701 Score: 57
Period size: 6 Copynumber: 8.3 Consensus size: 6
24722642 TTAATACAAC
* * *
24722652 AAAAT- AAAATA AAAATA AGTAAGA CAAATA AAAATA AAAATA AAAATA
1 AAAATA AAAATA AAAATA A-AAATA AAAATA AAAATA AAAATA AAAATA
24722700 AA
1 AA
24722702 TATCTAACCT
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
5 5 0.14
6 29 0.78
7 3 0.08
ACGTcount: A:0.78, C:0.02, G:0.04, T:0.16
Consensus pattern (6 bp):
AAAATA
Done.