Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 78 of 344
Found at i:25699597 original size:44 final size:44
Alignment explanation
Indices: 25699486--25699659 Score: 154
Period size: 45 Copynumber: 3.9 Consensus size: 44
25699476 TTATTTATAG
* * *
25699486 CTTCAATCTATTCCACTACAACTTCAGGGAAATAAGATTCTCTAT
1 CTTCAATCTACTCCACTACAACTTCAGGGAGATAAGA-TCTCTAA
* * *
25699531 CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGA-C-CTGACA
1 CTTCAATCTACTCCACTACAACTTCAGGGAGATAAGATCTCT-A-A
* * * *
25699575 CTTCAACCTACTCCACTACAACTTCAGGGAGATAAGGTTTGTAA
1 CTTCAATCTACTCCACTACAACTTCAGGGAGATAAGATCTCTAA
* * * * * *
25699619 TCTTCGATCTATTTCACTGCAACTTCAAGGAGATAAAATCT
1 -CTTCAATCTACTCCACTACAACTTCAGGGAGATAAGATCT
25699660 GACTTCATCG
Statistics
Matches: 102, Mismatches: 22, Indels: 10
0.76 0.16 0.07
Matches are distributed among these distances:
42 2 0.02
43 2 0.02
44 33 0.32
45 64 0.63
46 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.29
Consensus pattern (44 bp):
CTTCAATCTACTCCACTACAACTTCAGGGAGATAAGATCTCTAA
Found at i:25700832 original size:3 final size:3
Alignment explanation
Indices: 25700824--25700868 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
25700814 TCGGCCTCTC
25700824 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
25700869 TTTTAAGGAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
CTT
Found at i:25706670 original size:8 final size:8
Alignment explanation
Indices: 25706652--25706684 Score: 57
Period size: 8 Copynumber: 4.0 Consensus size: 8
25706642 TGAAAATCTA
25706652 ATGCAAATG
1 ATGC-AATG
25706661 ATGCAATG
1 ATGCAATG
25706669 ATGCAATG
1 ATGCAATG
25706677 ATGCAATG
1 ATGCAATG
25706685 CAATACGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 20 0.83
9 4 0.17
ACGTcount: A:0.39, C:0.12, G:0.24, T:0.24
Consensus pattern (8 bp):
ATGCAATG
Found at i:25709125 original size:21 final size:19
Alignment explanation
Indices: 25709100--25709151 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
25709090 TTTAAAAGCA
25709100 ATAAATTATATATAAATAGAT
1 ATAAATTATATAT-AA-AGAT
* * *
25709121 TTAAAATATATATAACGAT
1 ATAAATTATATATAAAGAT
25709140 ATAAATTATATA
1 ATAAATTATATA
25709152 CAAAACAATA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
19 13 0.50
20 2 0.08
21 11 0.42
ACGTcount: A:0.56, C:0.02, G:0.04, T:0.38
Consensus pattern (19 bp):
ATAAATTATATATAAAGAT
Found at i:25709239 original size:14 final size:15
Alignment explanation
Indices: 25709211--25709239 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
25709201 AGTTTAATAT
25709211 AAATAATATATGTAA
1 AAATAATATATGTAA
25709226 AAATAATA-ATGTAA
1 AAATAATATATGTAA
25709240 TATTTGAAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.62, C:0.00, G:0.07, T:0.31
Consensus pattern (15 bp):
AAATAATATATGTAA
Found at i:25710089 original size:10 final size:10
Alignment explanation
Indices: 25710059--25710098 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
25710049 CTCAAACAAT
*
25710059 AAACTCAAAG
1 AAACTTAAAG
*
25710069 AAAACTGAAAG
1 -AAACTTAAAG
25710080 AAACTTAAAG
1 AAACTTAAAG
25710090 AAACTTAAA
1 AAACTTAAA
25710099 TCAGAAATCA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
10 18 0.67
11 9 0.33
ACGTcount: A:0.62, C:0.12, G:0.10, T:0.15
Consensus pattern (10 bp):
AAACTTAAAG
Found at i:25710462 original size:24 final size:24
Alignment explanation
Indices: 25710434--25710496 Score: 101
Period size: 24 Copynumber: 2.6 Consensus size: 24
25710424 ATTTGTTTTA
25710434 TTTGGGTATT-GGGTTATGGGTTTG
1 TTTGGGT-TTAGGGTTATGGGTTTG
25710458 TTTGGGTTTAGGGTTATGGGTTTG
1 TTTGGGTTTAGGGTTATGGGTTTG
*
25710482 TTTTGGTTTAGGGTT
1 TTTGGGTTTAGGGTT
25710497 TAGTTAGTTG
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
23 2 0.05
24 35 0.95
ACGTcount: A:0.08, C:0.00, G:0.40, T:0.52
Consensus pattern (24 bp):
TTTGGGTTTAGGGTTATGGGTTTG
Found at i:25711472 original size:41 final size:41
Alignment explanation
Indices: 25711338--25711532 Score: 232
Period size: 41 Copynumber: 4.8 Consensus size: 41
25711328 AATAGGGTTT
**
25711338 TAGCGGCATTTTTGGTAAAACGCCGCTAAAAA-CAGAGCAA
1 TAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATCAGAGCAA
* * * *
25711378 TAGCGGCGTTTTTTTGTTAAAACACTGCTAAAAAT-AGAGCAA
1 TAGCGGCG--CTTTTGGTAAAACGCCGCTAAAAATCAGAGCAA
** * *
25711420 TAGCGATGCTTTTGGTAAAACGCCGCTAAAAGTCGGAGCAA
1 TAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATCAGAGCAA
* * *
25711461 TAGCTGCGCTTTTGGTAAAACGCCGCTAAAAACCAGAGCAT
1 TAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATCAGAGCAA
*
25711502 TAGCGGCGCTTTTGGTAAAACGCCGTTAAAA
1 TAGCGGCGCTTTTGGTAAAACGCCGCTAAAA
25711533 GTCATATAAC
Statistics
Matches: 130, Mismatches: 21, Indels: 7
0.82 0.13 0.04
Matches are distributed among these distances:
40 27 0.21
41 69 0.53
42 34 0.26
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.24
Consensus pattern (41 bp):
TAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATCAGAGCAA
Found at i:25711630 original size:53 final size:54
Alignment explanation
Indices: 25711545--25711660 Score: 128
Period size: 53 Copynumber: 2.2 Consensus size: 54
25711535 CATATAACCC
* * * * *
25711545 CTAAAACCCTAAACCCTAAAAAATCATGAACACTGATCTATAACCCCTAAAATA
1 CTAAACCCCTAAACCCTAAAAAATCATAAACACTAAACTATAACCCCTAAAACA
* ** *
25711599 CTAAACCCCTGAACCCT-AAAAA-CACTAAACACTAAACTATAACTTCTAAAACC
1 CTAAACCCCTAAACCCTAAAAAATCA-TAAACACTAAACTATAACCCCTAAAACA
25711652 CTAAACCCC
1 CTAAACCCC
25711661 AAAAAACATC
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
52 2 0.04
53 35 0.67
54 15 0.29
ACGTcount: A:0.47, C:0.32, G:0.03, T:0.19
Consensus pattern (54 bp):
CTAAACCCCTAAACCCTAAAAAATCATAAACACTAAACTATAACCCCTAAAACA
Found at i:25711797 original size:7 final size:7
Alignment explanation
Indices: 25711787--25711834 Score: 51
Period size: 7 Copynumber: 6.7 Consensus size: 7
25711777 CGGCTTAATA
25711787 TTTAAGG
1 TTTAAGG
25711794 TTTAAGG
1 TTTAAGG
* *
25711801 TCTATGG
1 TTTAAGG
*
25711808 TTTAGGG
1 TTTAAGG
*
25711815 TTTTATGG
1 -TTTAAGG
25711823 TTTAAGG
1 TTTAAGG
25711830 TTTAA
1 TTTAA
25711835 TGGCCATGGG
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
7 28 0.82
8 6 0.18
ACGTcount: A:0.23, C:0.02, G:0.27, T:0.48
Consensus pattern (7 bp):
TTTAAGG
Found at i:25711823 original size:15 final size:15
Alignment explanation
Indices: 25711787--25711837 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
25711777 CGGCTTAATA
*
25711787 TTTAAGGTTTAAGG-
1 TTTATGGTTTAAGGT
* *
25711801 TCTATGGTTTAGGGT
1 TTTATGGTTTAAGGT
25711816 TTTATGGTTTAAGGT
1 TTTATGGTTTAAGGT
*
25711831 TTAATGG
1 TTTATGG
25711838 CCATGGGTAT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
14 11 0.37
15 19 0.63
ACGTcount: A:0.22, C:0.02, G:0.29, T:0.47
Consensus pattern (15 bp):
TTTATGGTTTAAGGT
Found at i:25712445 original size:8 final size:8
Alignment explanation
Indices: 25712432--25712511 Score: 135
Period size: 8 Copynumber: 10.1 Consensus size: 8
25712422 AAATAAACTC
25712432 AAAAATTA
1 AAAAATTA
25712440 AAAAATTA
1 AAAAATTA
25712448 AAAAATT-
1 AAAAATTA
25712455 AAAAATTA
1 AAAAATTA
25712463 AAAAATTA
1 AAAAATTA
25712471 AAAAATTA
1 AAAAATTA
25712479 AAAAATTA
1 AAAAATTA
25712487 AAAAATTA
1 AAAAATTA
*
25712495 AAAACTTA
1 AAAAATTA
*
25712503 AAAATTTA
1 AAAAATTA
25712511 A
1 A
25712512 TATTTAATAT
Statistics
Matches: 69, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
7 7 0.10
8 62 0.90
ACGTcount: A:0.72, C:0.01, G:0.00, T:0.26
Consensus pattern (8 bp):
AAAAATTA
Found at i:25712518 original size:23 final size:23
Alignment explanation
Indices: 25712432--25712508 Score: 136
Period size: 23 Copynumber: 3.3 Consensus size: 23
25712422 AAATAAACTC
25712432 AAAAATTAAAAAATTAAAAAATT
1 AAAAATTAAAAAATTAAAAAATT
25712455 AAAAATTAAAAAATTAAAAAATT
1 AAAAATTAAAAAATTAAAAAATT
*
25712478 AAAAAATTAAAAAATTAAAAACTT
1 -AAAAATTAAAAAATTAAAAAATT
25712502 AAAAATT
1 AAAAATT
25712509 TAATATTTAA
Statistics
Matches: 52, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
23 30 0.58
24 22 0.42
ACGTcount: A:0.73, C:0.01, G:0.00, T:0.26
Consensus pattern (23 bp):
AAAAATTAAAAAATTAAAAAATT
Found at i:25715434 original size:23 final size:23
Alignment explanation
Indices: 25715404--25715731 Score: 260
Period size: 23 Copynumber: 14.3 Consensus size: 23
25715394 TGGCTGCTGT
25715404 TGTTTAAATGCTGCAAATTGAAG
1 TGTTTAAATGCTGCAAATTGAAG
*
25715427 TGTTTAAATGCTGTAAATTGAAG
1 TGTTTAAATGCTGCAAATTGAAG
* *
25715450 TGTTTAAATGTTGTAAATTGAAG
1 TGTTTAAATGCTGCAAATTGAAG
* *
25715473 TGTTTAAGTACTGCAAATTGAAG
1 TGTTTAAATGCTGCAAATTGAAG
* *
25715496 TGTTTAACTACTGCAAATTGAAG
1 TGTTTAAATGCTGCAAATTGAAG
** *
25715519 TGTTTAGTTGCTGGAAATTG-AG
1 TGTTTAAATGCTGCAAATTGAAG
* *
25715541 ATGTTT-TATCGCTG-TAATTG-AG
1 -TGTTTAAAT-GCTGCAAATTGAAG
* * **
25715563 TTGTATAAATGTTGTTAATTG-AG
1 -TGTTTAAATGCTGCAAATTGAAG
25715586 ATG-TTAAAGTGCTGCAAATTGAAG
1 -TGTTTAAA-TGCTGCAAATTGAAG
*
25715610 TGTTTAAATGCTGTAAATTGAAG
1 TGTTTAAATGCTGCAAATTGAAG
* ** * *
25715633 TGCTTAAATATTGTAAAATGAAG
1 TGTTTAAATGCTGCAAATTGAAG
* *
25715656 TGTTT-TATGAACTACAAATTGAAG
1 TGTTTAAATG--CTGCAAATTGAAG
** *
25715680 TGTTTAGTTGCTGGAAATTG-AG
1 TGTTTAAATGCTGCAAATTGAAG
*
25715702 ATGTTT-TATCGCTGCAAATTGAAG
1 -TGTTTAAAT-GCTGCAAATTGAAG
25715726 TGTTTA
1 TGTTTA
25715732 GTTGCTGGAA
Statistics
Matches: 249, Mismatches: 42, Indels: 27
0.78 0.13 0.08
Matches are distributed among these distances:
22 26 0.10
23 198 0.80
24 23 0.09
25 2 0.01
ACGTcount: A:0.32, C:0.06, G:0.22, T:0.39
Consensus pattern (23 bp):
TGTTTAAATGCTGCAAATTGAAG
Found at i:25715660 original size:114 final size:114
Alignment explanation
Indices: 25715407--25715682 Score: 281
Period size: 114 Copynumber: 2.4 Consensus size: 114
25715397 CTGCTGTTGT
* * * * *
25715407 TTAAATGCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAATGTTGTAAATTGAA
1 TTAAATACTGGAAAATGAAGTGTTT-TATGCTGTAAATTGAAGTGTATAAATGTTGTAAATTGAA
* * *
25715472 GTGTTTAAGTACTGCAAATTGAAGTGTTTAACTACTGCAAATTGAAGTGT
65 GTGTTAAAGTACTGCAAATTGAAGTGTTTAAATACTGCAAATTGAAGTGC
** * * *
25715522 TTAGTTGCTGGAAATTG-AGATGTTTTATCGCTGT-AATTG-AGTTGTATAAATGTTGTTAATTG
1 TTAAATACTGGAAAATGAAG-TGTTTTAT-GCTGTAAATTGAAG-TGTATAAATGTTGTAAATTG
* * *
25715584 -AGATGTTAAAGTGCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGC
63 AAG-TGTTAAAGTACTGCAAATTGAAGTGTTTAAATACTGCAAATTGAAGTGC
* * **
25715636 TTAAATATTGTAAAATGAAGTGTTTTATGAACTACAAATTGAAGTGT
1 TTAAATACTGGAAAATGAAGTGTTTTATG--CTGTAAATTGAAGTGT
25715683 TTAGTTGCTG
Statistics
Matches: 132, Mismatches: 20, Indels: 17
0.78 0.12 0.10
Matches are distributed among these distances:
113 5 0.04
114 89 0.67
115 28 0.21
116 8 0.06
117 2 0.02
ACGTcount: A:0.34, C:0.06, G:0.22, T:0.38
Consensus pattern (114 bp):
TTAAATACTGGAAAATGAAGTGTTTTATGCTGTAAATTGAAGTGTATAAATGTTGTAAATTGAAG
TGTTAAAGTACTGCAAATTGAAGTGTTTAAATACTGCAAATTGAAGTGC
Found at i:25716514 original size:44 final size:43
Alignment explanation
Indices: 25716409--25716571 Score: 218
Period size: 43 Copynumber: 3.8 Consensus size: 43
25716399 TTTCATGACC
* * *
25716409 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGCT
1 TTTAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGGTCACGACT
* *
25716452 TTTAGCGGCGTTTGTGGGAAAAGTACTGCTAAAGGTCACGACTT
1 TTTAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGGTCACGAC-T
* * * * *
25716496 TTTAGCGGCGTTTGTGGGAAAAACACCGTTACATGTCGCGACT
1 TTTAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGGTCACGACT
*
25716539 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAA
1 TTTAGCGGCGTTTGTGGGAAAAGCACCGCTAAA
25716572 AGCCTAAAAA
Statistics
Matches: 103, Mismatches: 16, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
43 67 0.65
44 36 0.35
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.27
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGGTCACGACT
Found at i:25716570 original size:87 final size:87
Alignment explanation
Indices: 25716409--25716571 Score: 227
Period size: 87 Copynumber: 1.9 Consensus size: 87
25716399 TTTCATGACC
* * * *
25716409 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGCTTTTAGCGGCGTTTGTGGGAAAA
1 TTTAGCGGCGTTTGTGGGAAAAACACCGCTAAAGGTCACGACTTTTAGCGGCGTTTGTGGGAAAA
* *
25716474 GTACTGCTAAAGGTCACGACTT
66 GCACCGCTAAAGGTCACGACTT
* * * *
25716496 TTTAGCGGCGTTTGTGGGAAAAACACCGTTACATGTCGCGACTTTTAGCGGCGTTTGTGGGAAAA
1 TTTAGCGGCGTTTGTGGGAAAAACACCGCTAAAGGTCACGACTTTTAGCGGCGTTTGTGGGAAAA
*
25716561 GCGCCGCTAAA
66 GCACCGCTAAA
25716572 AGCCTAAAAA
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
87 65 1.00
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.27
Consensus pattern (87 bp):
TTTAGCGGCGTTTGTGGGAAAAACACCGCTAAAGGTCACGACTTTTAGCGGCGTTTGTGGGAAAA
GCACCGCTAAAGGTCACGACTT
Found at i:25719490 original size:25 final size:26
Alignment explanation
Indices: 25719438--25719506 Score: 74
Period size: 25 Copynumber: 2.8 Consensus size: 26
25719428 TCACTCTTTC
*
25719438 GAGCT-ATGAACAGTAAGCTCCTCCT
1 GAGCTAATGAACAGTAAGCTCCTACT
* *
25719463 GAGCTAATGGACAGTAAGCT-CTATT
1 GAGCTAATGAACAGTAAGCTCCTACT
*
25719488 GAGCTAA--AACGGTAAGCTC
1 GAGCTAATGAACAGTAAGCTC
25719507 TGACGAGCTG
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
23 9 0.24
25 15 0.41
26 13 0.35
ACGTcount: A:0.32, C:0.22, G:0.23, T:0.23
Consensus pattern (26 bp):
GAGCTAATGAACAGTAAGCTCCTACT
Found at i:25719506 original size:23 final size:23
Alignment explanation
Indices: 25719446--25719551 Score: 81
Period size: 23 Copynumber: 4.4 Consensus size: 23
25719436 TCGAGCTATG
**
25719446 AACAGTAAGCTCCTCCTGAGCTAA
1 AACAGTAAGCT-CTATTGAGCTAA
*
25719470 TGGACAGTAAGCTCTATTGAGCTAA
1 --AACAGTAAGCTCTATTGAGCTAA
* *
25719495 AACGGTAAGCTCTGA-CGAGCTGAA
1 AACAGTAAGCTCT-ATTGAGCT-AA
* *
25719519 AATAGTAAGCTCT-TATGAGCTGA
1 AACAGTAAGCTCTAT-TGAGCTAA
25719542 AACAGTAAGC
1 AACAGTAAGC
25719552 CCCAACGAGT
Statistics
Matches: 65, Mismatches: 11, Indels: 11
0.75 0.13 0.13
Matches are distributed among these distances:
23 26 0.40
24 19 0.29
25 10 0.15
26 10 0.15
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.23
Consensus pattern (23 bp):
AACAGTAAGCTCTATTGAGCTAA
Found at i:25719526 original size:24 final size:24
Alignment explanation
Indices: 25719499--25719588 Score: 101
Period size: 24 Copynumber: 3.8 Consensus size: 24
25719489 AGCTAAAACG
*
25719499 GTAAGCTCTGACGAGCTGAAAATA
1 GTAAGCTCTTACGAGCTGAAAATA
* *
25719523 GTAAGCTCTTATGAGCTG-AAACA
1 GTAAGCTCTTACGAGCTGAAAATA
* ** *
25719546 GTAAGCCCCAACGAGTTGAAAATA
1 GTAAGCTCTTACGAGCTGAAAATA
*
25719570 GTAATCTCTTACGAGCTGA
1 GTAAGCTCTTACGAGCTGA
25719589 TATATCGGTA
Statistics
Matches: 51, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
23 17 0.33
24 34 0.67
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.23
Consensus pattern (24 bp):
GTAAGCTCTTACGAGCTGAAAATA
Found at i:25719529 original size:47 final size:47
Alignment explanation
Indices: 25719475--25719586 Score: 136
Period size: 47 Copynumber: 2.4 Consensus size: 47
25719465 GCTAATGGAC
* * **
25719475 AGTAAGCTC-TATTGAGCTAAAACGGTAAGCTCTGACGAGCTGAAAAT
1 AGTAAGCTCTTA-TGAGCTAAAACAGTAAGCCCCAACGAGCTGAAAAT
* *
25719522 AGTAAGCTCTTATGAGCTGAAACAGTAAGCCCCAACGAGTTGAAAAT
1 AGTAAGCTCTTATGAGCTAAAACAGTAAGCCCCAACGAGCTGAAAAT
* *
25719569 AGTAATCTCTTACGAGCT
1 AGTAAGCTCTTATGAGCT
25719587 GATATATCGG
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
47 54 0.96
48 2 0.04
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (47 bp):
AGTAAGCTCTTATGAGCTAAAACAGTAAGCCCCAACGAGCTGAAAAT
Found at i:25722960 original size:28 final size:28
Alignment explanation
Indices: 25722883--25722960 Score: 68
Period size: 28 Copynumber: 2.8 Consensus size: 28
25722873 GAGACCCCAG
* **
25722883 AGGGT-AAAATGACCAAAATACCCCTAA
1 AGGGTAAAAATGACTATTATACCCCTAA
* *
25722910 AGGGTAAAAATTACTATTCTACCCCTAA
1 AGGGTAAAAATGACTATTATACCCCTAA
* ** *
25722938 TGGGTGGAAATGACTGTTATACC
1 AGGGTAAAAATGACTATTATACC
25722961 TTACAGGTAG
Statistics
Matches: 39, Mismatches: 11, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
27 5 0.13
28 34 0.87
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.24
Consensus pattern (28 bp):
AGGGTAAAAATGACTATTATACCCCTAA
Found at i:25725666 original size:43 final size:44
Alignment explanation
Indices: 25725598--25725726 Score: 147
Period size: 46 Copynumber: 2.9 Consensus size: 44
25725588 CTTTTATTCA
* * *
25725598 TTCACCGGCATT-TCGCCTGCTAGGCTCG-AGGCCTGATATCAT-
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGA-ATAATG
25725640 TTCACCGGCATTATAGCCTGCTAGGCTCGAAAGGCCCGAATAATG
1 TTCACCGGCATTATAGCCTGCTAGGCTCG-AAGGCCCGAATAATG
* * * *
25725685 TCTCACCGGCATAATAGCCTCCTAGGCTCAAAGGCTCGAATA
1 T-TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATA
25725727 TAATACCAGC
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
42 12 0.16
43 15 0.20
44 4 0.05
45 19 0.25
46 25 0.33
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.24
Consensus pattern (44 bp):
TTCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAATG
Found at i:25725775 original size:38 final size:38
Alignment explanation
Indices: 25725724--25725881 Score: 217
Period size: 38 Copynumber: 4.1 Consensus size: 38
25725714 AAAGGCTCGA
* * * *
25725724 ATATAATACCAGCACTAGGCCTACTGGATTTAACCCGG
1 ATATAATACCAGCACAAAGCCTGCGGGATTTAACCCGG
*
25725762 ATATAATACCAGCACAAAGCCTGTGGGATTTAACCCGG
1 ATATAATACCAGCACAAAGCCTGCGGGATTTAACCCGG
*
25725800 ATATATTACCAGCACAAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACAAAGCCTGCGGGATTTAACCCGG
* * *
25725838 TTATATTACCAGCACGAAGCCTGCGGGATTTTAAGCCCGG
1 ATATAATACCAGCACAAAGCCTGCGGGA-TTTAA-CCCGG
25725878 ATAT
1 ATAT
25725882 CATATTTAGA
Statistics
Matches: 108, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
38 95 0.88
39 5 0.05
40 8 0.07
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (38 bp):
ATATAATACCAGCACAAAGCCTGCGGGATTTAACCCGG
Found at i:25734245 original size:27 final size:27
Alignment explanation
Indices: 25734212--25734351 Score: 174
Period size: 27 Copynumber: 5.2 Consensus size: 27
25734202 TGAAATGCCT
*
25734212 TCGATTTGTAGAATTACCATTTTACCC
1 TCGATTTATAGAATTACCATTTTACCC
* *
25734239 TCCATTTATAGAATTACC-TTTCACCC
1 TCGATTTATAGAATTACCATTTTACCC
* * **
25734265 TCGATTTACAAAATTACTGTTTTACCC
1 TCGATTTATAGAATTACCATTTTACCC
*
25734292 TCGATTTATAAAATTACCATTTTACCC
1 TCGATTTATAGAATTACCATTTTACCC
* * *
25734319 TTGATTTACAGAATTACCGTTTTACCC
1 TCGATTTATAGAATTACCATTTTACCC
25734346 TCGATT
1 TCGATT
25734352 GTGAAATTAC
Statistics
Matches: 96, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
26 21 0.22
27 75 0.78
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.41
Consensus pattern (27 bp):
TCGATTTATAGAATTACCATTTTACCC
Found at i:25734341 original size:54 final size:53
Alignment explanation
Indices: 25734212--25734351 Score: 190
Period size: 53 Copynumber: 2.6 Consensus size: 53
25734202 TGAAATGCCT
** * * *
25734212 TCGATTTGTAGAATTACCATTTTACCCTCCATTTATAGAATTACCTTTCACCC
1 TCGATTTACAGAATTACCGTTTTACCCTCGATTTATAAAATTACCTTTCACCC
* * *
25734265 TCGATTTACAAAATTACTGTTTTACCCTCGATTTATAAAATTACCATTTTACCC
1 TCGATTTACAGAATTACCGTTTTACCCTCGATTTATAAAATTACC-TTTCACCC
*
25734319 TTGATTTACAGAATTACCGTTTTACCCTCGATT
1 TCGATTTACAGAATTACCGTTTTACCCTCGATT
25734352 GTGAAATTAC
Statistics
Matches: 75, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
53 38 0.51
54 37 0.49
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.41
Consensus pattern (53 bp):
TCGATTTACAGAATTACCGTTTTACCCTCGATTTATAAAATTACCTTTCACCC
Found at i:25734371 original size:80 final size:79
Alignment explanation
Indices: 25734195--25734371 Score: 203
Period size: 80 Copynumber: 2.2 Consensus size: 79
25734185 TTAGTTTACC
* * * * *
25734195 AAATTACTGAAATGCCTTCGATTTGTAGAATTACCATTTTACCCTCCATTTATAGAATTACCTTT
1 AAATTACTGAAATACCCTCGATTTATAAAATTACCATTTTACCCTCCATTTACAGAATTACCTTT
25734260 CACCCTCGATTTACA
66 CACCCTCGATTTA-A
*** **
25734275 AAATTACTGTTTTACCCTCGATTTATAAAATTACCATTTTACCCTTGATTTACAGAATTACCGTT
1 AAATTACTGAAATACCCTCGATTTATAAAATTACCATTTTACCCTCCATTTACAGAATTACC-TT
* *
25734340 TTACCCTCGATTGT-G
65 TCACCCTCGATT-TAA
*
25734355 AAATTACTAAAATACCC
1 AAATTACTGAAATACCC
25734372 CTGTAGGATA
Statistics
Matches: 79, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
80 65 0.82
81 13 0.16
82 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (79 bp):
AAATTACTGAAATACCCTCGATTTATAAAATTACCATTTTACCCTCCATTTACAGAATTACCTTT
CACCCTCGATTTAA
Found at i:25734522 original size:27 final size:27
Alignment explanation
Indices: 25734350--25734509 Score: 189
Period size: 27 Copynumber: 5.9 Consensus size: 27
25734340 TTACCCTCGA
* *
25734350 TTGTGAAATTACTAAAATACCCCT-GT
1 TTGTAAAATTACCAAAATACCCCTAGT
** *
25734376 AGGATAGAATTACCAAAATACCCCTAGT
1 TTG-TAAAATTACCAAAATACCCCTAGT
*
25734404 TTGTAAAATTACCAAAATACCCTTAGT
1 TTGTAAAATTACCAAAATACCCCTAGT
* *
25734431 TTGTAAAATTACCAAAATACCACTGGT
1 TTGTAAAATTACCAAAATACCCCTAGT
* * *
25734458 TTGTGAAATTACCGAAATA-CCCTCAAT
1 TTGTAAAATTACCAAAATACCCCT-AGT
25734485 TTGTAAAATTACCAAAATACCCCTA
1 TTGTAAAATTACCAAAATACCCCTA
25734510 ATTTACAAAA
Statistics
Matches: 111, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
26 4 0.04
27 100 0.90
28 7 0.06
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTAGT
Found at i:25734584 original size:27 final size:27
Alignment explanation
Indices: 25734511--25734596 Score: 95
Period size: 27 Copynumber: 3.1 Consensus size: 27
25734501 ATACCCCTAA
* *
25734511 TTTACAAAATTATAGAAACACCATTGAC
1 TTTACAAAATTATAGAAATACCATTG-G
25734539 TTT-CTAAAAATTATAGAAATACCATTGG
1 TTTAC--AAAATTATAGAAATACCATTGG
*
25734567 TTTACAAAATTACT-GAAATACCCTTGG
1 TTTACAAAATTA-TAGAAATACCATTGG
25734594 TTT
1 TTT
25734597 GTAGATTTAC
Statistics
Matches: 51, Mismatches: 3, Indels: 9
0.81 0.05 0.14
Matches are distributed among these distances:
27 23 0.45
28 7 0.14
29 21 0.41
ACGTcount: A:0.41, C:0.15, G:0.09, T:0.35
Consensus pattern (27 bp):
TTTACAAAATTATAGAAATACCATTGG
Found at i:25734688 original size:26 final size:25
Alignment explanation
Indices: 25734637--25734708 Score: 67
Period size: 26 Copynumber: 2.8 Consensus size: 25
25734627 AAATGACTAA
25734637 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-ATAGGGT--AAAGACCGT
25734664 AA-AGCCCCTATAGGGTAAAGTACCGT
1 AATA-CCCCTATAGGGTAAAG-ACCGT
* *
25734690 AATACCCCTGTATGGTAAA
1 AATACCCCTATAGGGTAAA
25734709 ATGACGAATA
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
25 4 0.10
26 24 0.62
27 11 0.28
ACGTcount: A:0.39, C:0.22, G:0.18, T:0.21
Consensus pattern (25 bp):
AATACCCCTATAGGGTAAAGACCGT
Found at i:25735593 original size:24 final size:25
Alignment explanation
Indices: 25735522--25735588 Score: 107
Period size: 25 Copynumber: 2.7 Consensus size: 25
25735512 AGGAAGTGCT
* * *
25735522 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
25735547 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
25735572 AAAAGGGCTTTGCCCCA
1 AAAAGGGCTTTGCCCCA
25735589 ATTATTAAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.22
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:25735598 original size:24 final size:25
Alignment explanation
Indices: 25735522--25735598 Score: 93
Period size: 25 Copynumber: 3.1 Consensus size: 25
25735512 AGGAAGTGCT
* * * *
25735522 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGATTATCA
*
25735547 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGATTATCA
*
25735572 AAAAGGGCTTTGCCCCA-ATTATTA
1 AAAAGGGCTTTGCCCCAGATTATCA
25735596 AAA
1 AAA
25735599 GAGGCTAGGC
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
24 8 0.17
25 39 0.83
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGATTATCA
Found at i:25735909 original size:29 final size:28
Alignment explanation
Indices: 25735875--25735929 Score: 83
Period size: 29 Copynumber: 1.9 Consensus size: 28
25735865 AGACTGAATT
* *
25735875 AGGGCTTAGGCCCATACTGCTACTGTTTA
1 AGGGCTAAGGCCCAGACTG-TACTGTTTA
25735904 AGGGCTAAGGCCCAGACTGTACTGTT
1 AGGGCTAAGGCCCAGACTGTACTGTT
25735930 ACTAAATAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 7 0.29
29 17 0.71
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.27
Consensus pattern (28 bp):
AGGGCTAAGGCCCAGACTGTACTGTTTA
Found at i:25738095 original size:26 final size:27
Alignment explanation
Indices: 25738036--25738099 Score: 85
Period size: 26 Copynumber: 2.4 Consensus size: 27
25738026 ATTACTAAAG
* *
25738036 TACCCTTGATTTATAGAATCACTATTT
1 TACCCTCGATTTACAGAATCACTATTT
* *
25738063 TACCCTCGATTTACA-AATTACTGTTT
1 TACCCTCGATTTACAGAATCACTATTT
25738089 TACCCTCGATT
1 TACCCTCGATT
25738100 GTGAAATTAC
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
26 20 0.61
27 13 0.39
ACGTcount: A:0.27, C:0.23, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATCACTATTT
Found at i:25738161 original size:27 final size:27
Alignment explanation
Indices: 25738131--25738254 Score: 110
Period size: 27 Copynumber: 4.6 Consensus size: 27
25738121 TATAGGGTAG
25738131 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * * *
25738158 AATTACCAAAATATCACTGGTTTCTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
25738185 AATTACCGAAATA-CCCTCAATTTGTGA
1 AATTACCAAAATACCCCT-AGTTTGTAA
**
25738212 AATTACCAAAATACCCCT-GATTTACAA
1 AATTACCAAAATACCCCTAG-TTTGTAA
25738239 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
25738255 TTGACTTTTT
Statistics
Matches: 78, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
26 5 0.06
27 69 0.88
28 4 0.05
ACGTcount: A:0.41, C:0.23, G:0.08, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:25738242 original size:54 final size:55
Alignment explanation
Indices: 25738131--25738311 Score: 149
Period size: 54 Copynumber: 3.3 Consensus size: 55
25738121 TATAGGGTAG
* * * * *
25738131 AATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATATCACTGGTTTCTGA
1 AATTACCGAAATACCCTCTAATTTGTAAAATTACCAAAATACCACTGATTTCTAA
* *
25738185 AATTACCGAAATACCCTC-AATTTGTGAAATTACCAAAATACCCCTGATTTAC-AA
1 AATTACCGAAATACCCTCTAATTTGTAAAATTACCAAAATACCACTGATTT-CTAA
* * * * * *
25738239 AATTACAGAAATACCCT-TGACTTTTTAAAAATTA-TAGAAATACCATTGGTTTAC-AA
1 AATTACCGAAATACCCTCT-AATTTGT-AAAATTACCA-AAATACCACTGATTT-CTAA
*
25738295 AATTACTGAAATACCCT
1 AATTACCGAAATACCCT
25738312 TGGTTTGTAG
Statistics
Matches: 105, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
54 59 0.56
55 8 0.08
56 38 0.36
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (55 bp):
AATTACCGAAATACCCTCTAATTTGTAAAATTACCAAAATACCACTGATTTCTAA
Found at i:25738305 original size:27 final size:27
Alignment explanation
Indices: 25738211--25738317 Score: 101
Period size: 27 Copynumber: 3.9 Consensus size: 27
25738201 TCAATTTGTG
** * *
25738211 AAATTACCAAAATACCCCTGATTTACA
1 AAATTACTGAAATACCCTTGGTTTACA
* *
25738238 AAATTACAGAAATACCCTTGACTTTTTA-A
1 AAATTACTGAAATACCCTTG---GTTTACA
*
25738267 AAATTA-TAGAAATACCATTGGTTTACA
1 AAATTACT-GAAATACCCTTGGTTTACA
25738294 AAATTACTGAAATACCCTTGGTTT
1 AAATTACTGAAATACCCTTGGTTT
25738318 GTAGATTTAC
Statistics
Matches: 66, Mismatches: 8, Indels: 12
0.77 0.09 0.14
Matches are distributed among these distances:
26 4 0.06
27 39 0.59
28 1 0.02
29 18 0.27
30 4 0.06
ACGTcount: A:0.41, C:0.18, G:0.08, T:0.33
Consensus pattern (27 bp):
AAATTACTGAAATACCCTTGGTTTACA
Found at i:25738435 original size:27 final size:26
Alignment explanation
Indices: 25738358--25738435 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 26
25738348 AAATGACTAA
* *
25738358 AATACCCCTAATAGGTAAAAAGACCGT
1 AATACCCCTTAT-GGTAAAATGACCGT
* *
25738385 AA-AGCCCCTATAGGGTAAAGTGACCGT
1 AATA-CCCCT-TATGGTAAAATGACCGT
25738412 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCT-TATGGTAAAATGAC
25738436 GAATATGCCC
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
26 1 0.02
27 38 0.93
28 2 0.05
ACGTcount: A:0.38, C:0.22, G:0.19, T:0.21
Consensus pattern (26 bp):
AATACCCCTTATGGTAAAATGACCGT
Found at i:25739266 original size:25 final size:25
Alignment explanation
Indices: 25739228--25739297 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
25739218 AGGAAGTGCT
*
25739228 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
25739253 AAAAGGGCTTTGCCCCAGTTTATCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
25739278 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
25739298 ATTAAAAGAG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:25739310 original size:24 final size:24
Alignment explanation
Indices: 25739228--25739342 Score: 106
Period size: 25 Copynumber: 4.5 Consensus size: 24
25739218 AGGAAGTGCT
*
25739228 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTATGCCCCAGTTTA-TG
*
25739253 AAAAGGGCTTTGCCCCAGTTTATCG
1 AAAAGGGCTATGCCCCAGTTTAT-G
* *
25739278 AAAAGGGCTTTGCCCCAG-TTATT
1 AAAAGGGCTATGCCCCAGTTTATG
*
25739301 AAAAGAGGCTAGGCCTCCAGTTATATG
1 AAAAG-GGCTATGCC-CCAGTT-TATG
*
25739328 ATAAAGTAGCTATGC
1 A-AAAG-GGCTATGC
25739343 TGCCAGTGGA
Statistics
Matches: 75, Mismatches: 9, Indels: 9
0.81 0.10 0.10
Matches are distributed among these distances:
23 5 0.07
24 11 0.15
25 44 0.59
26 1 0.01
27 4 0.05
28 10 0.13
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (24 bp):
AAAAGGGCTATGCCCCAGTTTATG
Found at i:25740509 original size:15 final size:15
Alignment explanation
Indices: 25740489--25740517 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
25740479 TTAGATCACT
25740489 ATGTTTTGTATTGGG
1 ATGTTTTGTATTGGG
25740504 ATGTTTTGTATTGG
1 ATGTTTTGTATTGG
25740518 CATTTTTGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.00, G:0.31, T:0.55
Consensus pattern (15 bp):
ATGTTTTGTATTGGG
Found at i:25741166 original size:86 final size:85
Alignment explanation
Indices: 25741069--25741225 Score: 219
Period size: 86 Copynumber: 1.8 Consensus size: 85
25741059 TTTCGACATG
* * *
25741069 TGATTTTGTGTAAGACCAC-ATCTGGGACGTTGGCATCGAT-TTGAGATTTACGTGTAAGACCAT
1 TGATTTTGTGTAAGACC-CTATCTGGGACATTGGCATCGATATT-AGA-TTACATGTAAGACCAC
25741132 GTCTGGGACATCGACATCGTATT
63 GTCTGGGACATCGACATCGTATT
* * *
25741155 TGATTTTGTGTAAGACCCTGTCTGGGACATTGGCATCGATATTTGATTACATGTAAGACCACGTT
1 TGATTTTGTGTAAGACCCTATCTGGGACATTGGCATCGATATTAGATTACATGTAAGACCACGTC
25741220 TGGGAC
66 TGGGAC
25741226 GTTGGCATTG
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
85 23 0.37
86 38 0.60
87 2 0.03
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.33
Consensus pattern (85 bp):
TGATTTTGTGTAAGACCCTATCTGGGACATTGGCATCGATATTAGATTACATGTAAGACCACGTC
TGGGACATCGACATCGTATT
Found at i:25741199 original size:43 final size:43
Alignment explanation
Indices: 25741069--25741233 Score: 174
Period size: 43 Copynumber: 3.8 Consensus size: 43
25741059 TTTCGACATG
* * *
25741069 TGATTTTGTGTAAGACCACATCTGGGACGTTGGCATCGAT-TT
1 TGATTTCGTGTAAGACCACGTCTGGGACATTGGCATCGATATT
* * * *
25741111 GAGATTTACGTGTAAGACCATGTCTGGGACATCGACATCG-TATT
1 -TGATTT-CGTGTAAGACCACGTCTGGGACATTGGCATCGATATT
*
25741155 TGATTTTGTGTAAGACC-CTGTCTGGGACATTGGCATCGATATT
1 TGATTTCGTGTAAGACCAC-GTCTGGGACATTGGCATCGATATT
* * * *
25741198 TGATTACATGTAAGACCACGTTTGGGACGTTGGCAT
1 TGATTTCGTGTAAGACCACGTCTGGGACATTGGCAT
25741234 TGTACGAGCT
Statistics
Matches: 100, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
42 27 0.27
43 44 0.44
44 29 0.29
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (43 bp):
TGATTTCGTGTAAGACCACGTCTGGGACATTGGCATCGATATT
Found at i:25749411 original size:17 final size:17
Alignment explanation
Indices: 25749389--25749423 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
25749379 TTGATTTAAG
*
25749389 TCATTTATTTTTCTTAT
1 TCATTTATTTTTATTAT
25749406 TCATTTATTTTTATTAT
1 TCATTTATTTTTATTAT
25749423 T
1 T
25749424 TAAATTCTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.20, C:0.09, G:0.00, T:0.71
Consensus pattern (17 bp):
TCATTTATTTTTATTAT
Found at i:25749790 original size:6 final size:6
Alignment explanation
Indices: 25749779--25749803 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
25749769 TTAATTTTTG
25749779 TTTATT TTTATT TTTATT TTTATT T
1 TTTATT TTTATT TTTATT TTTATT T
25749804 CAAGTCGGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTATT
Found at i:25751932 original size:108 final size:108
Alignment explanation
Indices: 25751743--25751959 Score: 434
Period size: 108 Copynumber: 2.0 Consensus size: 108
25751733 TTACAACCTA
25751743 TGGGTTATATCCCCTTCGGTAAGTCCACAAGTCCTACATTGATTTGCACTTTAGAGAATCCATCT
1 TGGGTTATATCCCCTTCGGTAAGTCCACAAGTCCTACATTGATTTGCACTTTAGAGAATCCATCT
25751808 TAAATTTCATAGTTGTTTCAAATGTGAGTGGTTCACCATTTTC
66 TAAATTTCATAGTTGTTTCAAATGTGAGTGGTTCACCATTTTC
25751851 TGGGTTATATCCCCTTCGGTAAGTCCACAAGTCCTACATTGATTTGCACTTTAGAGAATCCATCT
1 TGGGTTATATCCCCTTCGGTAAGTCCACAAGTCCTACATTGATTTGCACTTTAGAGAATCCATCT
25751916 TAAATTTCATAGTTGTTTCAAATGTGAGTGGTTCACCATTTTC
66 TAAATTTCATAGTTGTTTCAAATGTGAGTGGTTCACCATTTTC
25751959 T
1 T
25751960 CATTTGAAAG
Statistics
Matches: 109, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
108 109 1.00
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (108 bp):
TGGGTTATATCCCCTTCGGTAAGTCCACAAGTCCTACATTGATTTGCACTTTAGAGAATCCATCT
TAAATTTCATAGTTGTTTCAAATGTGAGTGGTTCACCATTTTC
Found at i:25758011 original size:27 final size:27
Alignment explanation
Indices: 25757981--25758158 Score: 148
Period size: 27 Copynumber: 6.6 Consensus size: 27
25757971 ATATTGAGTC
* *
25757981 CGCACACTCAGTGCTATATAAGCAACT
1 CGCACACTTAGTGCTACATAAGCAACT
* * *
25758008 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAAGCAACT
25758035 CGCACACTTAGTGCTACAT-AGTCAAACT
1 CGCACACTTAGTGCTACATAAG-C-AACT
** * *
25758063 CGCACACTTAGTGCCGCAT-GGTCAATT
1 CGCACACTTAGTGCTACATAAG-CAACT
** **
25758090 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAAGCAACT
* *
25758117 CGCACACTTAGTGCAACAT-AGTCAAAT
1 CGCACACTTAGTGCTACATAAG-CAACT
25758144 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
25758159 GTACAATTTA
Statistics
Matches: 124, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
26 1 0.01
27 99 0.80
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAAGCAACT
Found at i:25758120 original size:82 final size:81
Alignment explanation
Indices: 25758007--25758157 Score: 232
Period size: 82 Copynumber: 1.9 Consensus size: 81
25757997 TATAAGCAAC
* *
25758007 TCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 TCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCACACTT
25758072 AGTGCCGCATGGTCAAT
65 AGTGCCGCATGGTCAAT
* **
25758089 TCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCACACTT
1 TCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTT
25758153 AGTGC
65 AGTGC
25758158 TGTACAATTT
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 16 0.25
82 47 0.75
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (81 bp):
TCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
GTGCCGCATGGTCAAT
Found at i:25760839 original size:28 final size:28
Alignment explanation
Indices: 25760797--25760911 Score: 140
Period size: 28 Copynumber: 4.1 Consensus size: 28
25760787 CATGACTATA
**
25760797 AAAGTGATTGGGCCTGACAGGCCATATG
1 AAAGTGATTGGGCCTGATGGGCCATATG
* *
25760825 AAAGTGATTGCGCCTGATGGGCTATATG
1 AAAGTGATTGGGCCTGATGGGCCATATG
* *
25760853 AATGTGATTGGGCCCGATGGGCCATATG
1 AAAGTGATTGGGCCTGATGGGCCATATG
* * *
25760881 AATGAGATTGGGCCTAAATGGGCCATATG
1 AAAGTGATTGGGCCT-GATGGGCCATATG
25760910 AA
1 AA
25760912 TGAATATAGA
Statistics
Matches: 75, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
28 61 0.81
29 14 0.19
ACGTcount: A:0.28, C:0.16, G:0.32, T:0.24
Consensus pattern (28 bp):
AAAGTGATTGGGCCTGATGGGCCATATG
Found at i:25763693 original size:28 final size:28
Alignment explanation
Indices: 25763662--25763733 Score: 144
Period size: 28 Copynumber: 2.6 Consensus size: 28
25763652 GAGTGTGATT
25763662 TGGGCCTAATGGGCCACATAAATGTAAA
1 TGGGCCTAATGGGCCACATAAATGTAAA
25763690 TGGGCCTAATGGGCCACATAAATGTAAA
1 TGGGCCTAATGGGCCACATAAATGTAAA
25763718 TGGGCCTAATGGGCCA
1 TGGGCCTAATGGGCCA
25763734 TATGAAAGAG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.32, C:0.19, G:0.28, T:0.21
Consensus pattern (28 bp):
TGGGCCTAATGGGCCACATAAATGTAAA
Found at i:25764800 original size:39 final size:38
Alignment explanation
Indices: 25764737--25764909 Score: 220
Period size: 39 Copynumber: 4.4 Consensus size: 38
25764727 GAAGCCAGCG
* * * * *
25764737 GGACTTTAGCCCGGACATATTTCCAGCACGTAGCCTGC
1 GGACTTAAGTCCGGATATAATTCCAGCACATAGCCTGC
* *
25764775 GGATCTTAAGTTCGGTTATAATTCCAGCACATAGCCTGC
1 GGA-CTTAAGTCCGGATATAATTCCAGCACATAGCCTGC
*
25764814 GGACCTTAAGTCCGGATATAATTCCAGCACATAGCTTGC
1 GGA-CTTAAGTCCGGATATAATTCCAGCACATAGCCTGC
* *
25764853 AGACTCTAAGTCCGGATATAATTCCAGCACATAGCCTGT
1 GGACT-TAAGTCCGGATATAATTCCAGCACATAGCCTGC
25764892 GGACTCTAAGTCCGGATA
1 GGACT-TAAGTCCGGATA
25764910 AACATCACTG
Statistics
Matches: 118, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
38 5 0.04
39 113 0.96
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (38 bp):
GGACTTAAGTCCGGATATAATTCCAGCACATAGCCTGC
Found at i:25770347 original size:51 final size:49
Alignment explanation
Indices: 25770217--25770461 Score: 301
Period size: 49 Copynumber: 4.9 Consensus size: 49
25770207 TCAATTGTGA
* **
25770217 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* * * *
25770266 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA-TT
* * **
25770316 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* *
25770366 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* * * * *
25770416 GGCCGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGATA
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
25770462 GCTTTGGCTA
Statistics
Matches: 168, Mismatches: 26, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
49 80 0.48
50 49 0.29
51 39 0.23
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (49 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
Found at i:25777456 original size:28 final size:28
Alignment explanation
Indices: 25777416--25777527 Score: 109
Period size: 28 Copynumber: 4.0 Consensus size: 28
25777406 CATGACTGTT
*
25777416 AATGTGATTTGGGCCTAGT-GGCCATATG
1 AATGTGA-TTGGGCCTAATGGGCCATATG
* *
25777444 AATGTGATTTGGGCCTAATGGGCCACATA
1 AATGTGA-TTGGGCCTAATGGGCCATATG
* * *
25777473 AATGTGAATGTGCCTAATGGGCAATATG
1 AATGTGATTGGGCCTAATGGGCCATATG
* * * *
25777501 AAAGAGATTAGGCCTAGTGGGCCATAT
1 AATGTGATTGGGCCTAATGGGCCATAT
25777528 ATAGGTACGT
Statistics
Matches: 68, Mismatches: 15, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
28 54 0.79
29 14 0.21
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.28
Consensus pattern (28 bp):
AATGTGATTGGGCCTAATGGGCCATATG
Found at i:25782071 original size:28 final size:28
Alignment explanation
Indices: 25782038--25782140 Score: 116
Period size: 28 Copynumber: 3.7 Consensus size: 28
25782028 ATTGCATGAC
* *
25782038 TATGAAAGTGATTAGGCCTGACGGGCCA
1 TATGAAAGTGATTGGGCCTGATGGGCCA
* * *
25782066 TATGAAATTAATTGGGCCTAATGGGCCA
1 TATGAAAGTGATTGGGCCTGATGGGCCA
* *
25782094 TATGAATGTGATTGGGCCCGATGGGCCA
1 TATGAAAGTGATTGGGCCTGATGGGCCA
* * *
25782122 AATGAATGAGATTGGGCCT
1 TATGAAAGTGATTGGGCCT
25782141 AAAGGGGCCA
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 62 1.00
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.25
Consensus pattern (28 bp):
TATGAAAGTGATTGGGCCTGATGGGCCA
Found at i:25782105 original size:56 final size:57
Alignment explanation
Indices: 25782038--25782158 Score: 147
Period size: 56 Copynumber: 2.1 Consensus size: 57
25782028 ATTGCATGAC
* * * * *
25782038 TATGAAAGTGATTAGGCCTGACGGGCCATATGAAATTA-ATTGGGCCT-AATGGGCCA
1 TATGAATGTGATTAGGCCCGACGGGCCAAATG-AATGAGATTGGGCCTAAAGGGGCCA
* *
25782094 TATGAATGTGATTGGGCCCGATGGGCCAAATGAATGAGATTGGGCCTAAAGGGGCCA
1 TATGAATGTGATTAGGCCCGACGGGCCAAATGAATGAGATTGGGCCTAAAGGGGCCA
*
25782151 AATGAATG
1 TATGAATG
25782159 AGTATGGATC
Statistics
Matches: 55, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
55 4 0.07
56 36 0.65
57 15 0.27
ACGTcount: A:0.31, C:0.15, G:0.31, T:0.23
Consensus pattern (57 bp):
TATGAATGTGATTAGGCCCGACGGGCCAAATGAATGAGATTGGGCCTAAAGGGGCCA
Found at i:25782157 original size:29 final size:28
Alignment explanation
Indices: 25782076--25782160 Score: 116
Period size: 28 Copynumber: 3.0 Consensus size: 28
25782066 TATGAAATTA
* *
25782076 ATTGGGCCTAATGGGCCATATGAATGTG
1 ATTGGGCCTAATGGGCCAAATGAATGAG
**
25782104 ATTGGGCCCGATGGGCCAAATGAATGAG
1 ATTGGGCCTAATGGGCCAAATGAATGAG
*
25782132 ATTGGGCCTAAAGGGGCCAAATGAATGAG
1 ATTGGGCCT-AATGGGCCAAATGAATGAG
25782161 TATGGATCTG
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
28 32 0.65
29 17 0.35
ACGTcount: A:0.29, C:0.15, G:0.34, T:0.21
Consensus pattern (28 bp):
ATTGGGCCTAATGGGCCAAATGAATGAG
Found at i:25784047 original size:27 final size:27
Alignment explanation
Indices: 25784016--25784220 Score: 207
Period size: 27 Copynumber: 7.6 Consensus size: 27
25784006 TAAATTGTAC
*
25784016 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
25784043 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
25784069 ATGCACTAAGTGTGCGAAATGAATATG-
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
25784096 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
25784124 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
25784152 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * * *
25784179 AGCACTAAGTGTGTGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
25784206 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
25784221 GACTCAATAT
Statistics
Matches: 154, Mismatches: 21, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
27 131 0.85
28 23 0.15
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:25799337 original size:44 final size:44
Alignment explanation
Indices: 25799270--25799385 Score: 114
Period size: 42 Copynumber: 2.7 Consensus size: 44
25799260 ATTCTACGTA
* ** *
25799270 TAAGACCAGATCTATGACGTTAGCATCGACT-TCT-ATTTTGCGTG
1 TAAGACCATATCTGGGACATTAGCATCGACTATCTGATTTT--GTG
*
25799314 TAAGACCATGTCTGGGACATTAGCATCG--TATCTGATTTTGTG
1 TAAGACCATATCTGGGACATTAGCATCGACTATCTGATTTTGTG
* * *
25799356 TAAGACCCTATCTGGGACAGTGGCATCGAC
1 TAAGACCATATCTGGGACATTAGCATCGAC
25799386 GTTTGATTAC
Statistics
Matches: 59, Mismatches: 9, Indels: 8
0.78 0.12 0.11
Matches are distributed among these distances:
42 28 0.47
43 3 0.05
44 28 0.47
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (44 bp):
TAAGACCATATCTGGGACATTAGCATCGACTATCTGATTTTGTG
Found at i:25802371 original size:39 final size:39
Alignment explanation
Indices: 25802301--25802498 Score: 265
Period size: 39 Copynumber: 5.1 Consensus size: 39
25802291 CCAGAAAGCA
25802301 TGCGGGACTTTAAGCCCGGATATAATACCAGCATAAA-GCC
1 TGCGGGAC-TT-AGCCCGGATATAATACCAGCATAAATGCC
*
25802341 TGCGGGACTTTAGCTCGGATATAATACCAGCATAAATGCC
1 TGCGGGAC-TTAGCCCGGATATAATACCAGCATAAATGCC
* * * *
25802381 TTCGGGACTTAGCCCGGATATAACACTAGCACAAATGCC
1 TGCGGGACTTAGCCCGGATATAATACCAGCATAAATGCC
* * * *
25802420 TTCGGGACTTAGCCTGGATATAACACCAGCACAAATGCC
1 TGCGGGACTTAGCCCGGATATAATACCAGCATAAATGCC
*
25802459 TTCGGGACTTAGCCCGGATATAATACCAGCATAAA-GCC
1 TGCGGGACTTAGCCCGGATATAATACCAGCATAAATGCC
25802497 TG
1 TG
25802499 TGGACCTCAT
Statistics
Matches: 145, Mismatches: 12, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
38 4 0.03
39 120 0.83
40 21 0.14
ACGTcount: A:0.31, C:0.26, G:0.22, T:0.22
Consensus pattern (39 bp):
TGCGGGACTTAGCCCGGATATAATACCAGCATAAATGCC
Found at i:25816436 original size:42 final size:44
Alignment explanation
Indices: 25816354--25816439 Score: 115
Period size: 42 Copynumber: 2.0 Consensus size: 44
25816344 TAAGTTTGGA
*
25816354 ACATTGGCATCGATTTGAGATTTACGTGCAAGACCATGTCTGGG
1 ACATTGGCATCGATATGAGATTTACGTGCAAGACCATGTCTGGG
* *
25816398 ACATTGGCATC-ATAT-ATGATTT-CGTGTAAGACCCTGTCTGGG
1 ACATTGGCATCGATATGA-GATTTACGTGCAAGACCATGTCTGGG
25816440 GTAGTAGTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
42 19 0.50
43 8 0.21
44 11 0.29
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (44 bp):
ACATTGGCATCGATATGAGATTTACGTGCAAGACCATGTCTGGG
Found at i:25823004 original size:46 final size:47
Alignment explanation
Indices: 25822903--25823029 Score: 134
Period size: 46 Copynumber: 2.7 Consensus size: 47
25822893 AATCAATAAG
* **
25822903 TACCAATACCATGGCCTATAGCCAAATCAAGGTAACTTATCCCAGGG
1 TACCTATACCATGGCCTATAGCCAAATCAAGGTAACTTATCCCAGAA
* * *
25822950 TACCTATACCATGGCC-ATAGTCAAATCAAGGTAACTCT-TCTCTGAA
1 TACCTATACCATGGCCTATAGCCAAATCAAGGTAACT-TATCCCAGAA
* * *
25822996 TACTTATACCATGGCCCGA-AGCAAAATCAAGGTA
1 TACCTATACCATGG-CCTATAGCCAAATCAAGGTA
25823030 TCACTCGCAC
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
46 36 0.53
47 31 0.46
48 1 0.01
ACGTcount: A:0.35, C:0.26, G:0.16, T:0.24
Consensus pattern (47 bp):
TACCTATACCATGGCCTATAGCCAAATCAAGGTAACTTATCCCAGAA
Found at i:25823273 original size:17 final size:19
Alignment explanation
Indices: 25823231--25823274 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
25823221 ATGAAATTTT
*
25823231 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
25823250 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
25823268 AA-TATTA
1 AATTATTA
25823275 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:25830860 original size:29 final size:29
Alignment explanation
Indices: 25830815--25830890 Score: 125
Period size: 29 Copynumber: 2.6 Consensus size: 29
25830805 TATATATGTG
25830815 AATTATCGAGCACTAAGTGTGCAAAGTAA
1 AATTATCGAGCACTAAGTGTGCAAAGTAA
* *
25830844 AATTATCGAGCATTAAGTGTGCGAAGTAA
1 AATTATCGAGCACTAAGTGTGCAAAGTAA
*
25830873 AACTATCGAGCACTAAGT
1 AATTATCGAGCACTAAGT
25830891 CTGCTATCTC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.39, C:0.14, G:0.21, T:0.25
Consensus pattern (29 bp):
AATTATCGAGCACTAAGTGTGCAAAGTAA
Found at i:25848910 original size:29 final size:29
Alignment explanation
Indices: 25848865--25848944 Score: 133
Period size: 29 Copynumber: 2.8 Consensus size: 29
25848855 TATATATGTG
25848865 AATTATCGAGCACTAAGTGTGCAAAGTAA
1 AATTATCGAGCACTAAGTGTGCAAAGTAA
* *
25848894 AATTATCGAGCATTAAGTGTGCGAAGTAA
1 AATTATCGAGCACTAAGTGTGCAAAGTAA
*
25848923 AACTATCGAGCACTAAGTGTGC
1 AATTATCGAGCACTAAGTGTGC
25848945 TATCTCATTG
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 47 1.00
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.25
Consensus pattern (29 bp):
AATTATCGAGCACTAAGTGTGCAAAGTAA
Found at i:25857282 original size:42 final size:42
Alignment explanation
Indices: 25857180--25857328 Score: 144
Period size: 40 Copynumber: 3.6 Consensus size: 42
25857170 TTTTATCAAA
* * ** *
25857180 TCACCAGCATT-TAGCCTGCTAGGTTTTAAACCCGA-ATTCA-
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATA-TCAT
** *
25857220 TCACCGGCACGA-AGCCTGCTAGGCTGGAAGCCCGATATCAT
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATCAT
* * *
25857261 TCACCGGCATTATAGCCTGCTAGGCCCGAAGCCTGATATTAT
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATCAT
*
25857303 CTCACCGGCATTAGAGCCTGCTAGGC
1 -TCACCGGCATTATAGCCTGCTAGGC
25857329 CCAAAGCCTG
Statistics
Matches: 90, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
40 30 0.33
41 11 0.12
42 25 0.28
43 24 0.27
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.23
Consensus pattern (42 bp):
TCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATCAT
Found at i:25857322 original size:43 final size:42
Alignment explanation
Indices: 25857232--25857341 Score: 157
Period size: 43 Copynumber: 2.6 Consensus size: 42
25857222 ACCGGCACGA
** * *
25857232 AGCCTGCTAGGCTGGAAGCCCGATATCATTCACCGGCATTAT
1 AGCCTGCTAGGCCCGAAGCCTGATATCATTCACCGGCATTAG
*
25857274 AGCCTGCTAGGCCCGAAGCCTGATATTATCTCACCGGCATTAG
1 AGCCTGCTAGGCCCGAAGCCTGATATCAT-TCACCGGCATTAG
*
25857317 AGCCTGCTAGGCCCAAAGCCTGATA
1 AGCCTGCTAGGCCCGAAGCCTGATA
25857342 ATATTATTCA
Statistics
Matches: 61, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
42 25 0.41
43 36 0.59
ACGTcount: A:0.25, C:0.30, G:0.24, T:0.22
Consensus pattern (42 bp):
AGCCTGCTAGGCCCGAAGCCTGATATCATTCACCGGCATTAG
Found at i:25859292 original size:14 final size:15
Alignment explanation
Indices: 25859263--25859292 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
25859253 CAAAATTTAG
25859263 ACATGATACTTTCAC
1 ACATGATACTTTCAC
25859278 ACATGATAC-TTCAC
1 ACATGATACTTTCAC
25859292 A
1 A
25859293 AATAATAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (15 bp):
ACATGATACTTTCAC
Found at i:25868563 original size:5 final size:6
Alignment explanation
Indices: 25868548--25868582 Score: 54
Period size: 6 Copynumber: 5.8 Consensus size: 6
25868538 TTTAGCCATT
25868548 TTTTTA TTTTTA TTTTTA -TTTTA TTTTTAA TTTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTT-A TTTTT
25868583 CTTAAATTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
5 5 0.19
6 16 0.59
7 6 0.22
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTTA
Found at i:25868563 original size:12 final size:12
Alignment explanation
Indices: 25868548--25868582 Score: 54
Period size: 11 Copynumber: 2.9 Consensus size: 12
25868538 TTTAGCCATT
25868548 TTTTTATTTTTA
1 TTTTTATTTTTA
25868560 TTTTTA-TTTTA
1 TTTTTATTTTTA
25868571 TTTTTAATTTTT
1 TTTTT-ATTTTT
25868583 CTTAAATTAC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 10 0.48
12 7 0.33
13 4 0.19
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (12 bp):
TTTTTATTTTTA
Found at i:25868571 original size:17 final size:18
Alignment explanation
Indices: 25868549--25868582 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
25868539 TTAGCCATTT
25868549 TTTTATTTTT-ATTTTTA
1 TTTTATTTTTAATTTTTA
25868566 TTTTATTTTTAATTTTT
1 TTTTATTTTTAATTTTT
25868583 CTTAAATTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (18 bp):
TTTTATTTTTAATTTTTA
Found at i:25870576 original size:20 final size:20
Alignment explanation
Indices: 25870543--25870591 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
25870533 CTGACTAATT
* * *
25870543 GACACAGGCGTGTTGGATTG
1 GACACGGGCATGTTAGATTG
25870563 GACACGGGCATGTTAGATTG
1 GACACGGGCATGTTAGATTG
*
25870583 GAAACGGGC
1 GACACGGGC
25870592 GTGGGAGAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.24, C:0.16, G:0.39, T:0.20
Consensus pattern (20 bp):
GACACGGGCATGTTAGATTG
Found at i:25872291 original size:20 final size:19
Alignment explanation
Indices: 25872262--25872304 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
25872252 ATCCTGAATA
* *
25872262 ATTGACACGGGCGTGTTGG
1 ATTGACACGGACATGTTGG
25872281 ATTGCACACGGACATGTTGG
1 ATTG-ACACGGACATGTTGG
25872301 ATTG
1 ATTG
25872305 GACGCAGGCG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 4 0.19
20 17 0.81
ACGTcount: A:0.21, C:0.16, G:0.35, T:0.28
Consensus pattern (19 bp):
ATTGACACGGACATGTTGG
Found at i:25890671 original size:46 final size:46
Alignment explanation
Indices: 25890610--25890777 Score: 187
Period size: 46 Copynumber: 3.6 Consensus size: 46
25890600 CGAGGCCAAT
* *
25890610 GCATGTCCCAAACATGTCTTACTCTGGCACTCATAATATGGCTGAA
1 GCATGTCCCAAACATGTCTTACACTGGCACTCATAATATGGCCGAA
* * * * * * *
25890656 GCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTAGAT-GCCGAT
1 GCATGTCCCAAACATGTCTTACACTGGCACTCAT-AATATGGCCGAA
* *
25890702 GCCATGT-CCAACACATGATCTTACACTGGCTCTCATAATGTGGCCGAA
1 G-CATGTCCCAA-ACATG-TCTTACACTGGCACTCATAATATGGCCGAA
25890750 GCATGTCCCAAACATGTCTTACACTGGC
1 GCATGTCCCAAACATGTCTTACACTGGC
25890778 GCACAAATCT
Statistics
Matches: 99, Mismatches: 17, Indels: 12
0.77 0.13 0.09
Matches are distributed among these distances:
46 49 0.49
47 25 0.25
48 25 0.25
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (46 bp):
GCATGTCCCAAACATGTCTTACACTGGCACTCATAATATGGCCGAA
Found at i:25894427 original size:48 final size:45
Alignment explanation
Indices: 25894364--25894769 Score: 137
Period size: 47 Copynumber: 8.8 Consensus size: 45
25894354 TGGGTTATGT
* *
25894364 GAGA-GCTAGTATAAGACCATGTCTGGGACATGGCATCGGTATTGA
1 GAGAGGCTAGTGTAAGA-CATGTCTGGGACATGGCATCGGCATTGA
* * * * **
25894409 GACGAGGGCTAGTGTAAGACGTGTTTGGGACATACGTCAGCCACATT-A
1 GA-GA-GGCTAGTGTAAGACATGTCTGGGACAT--GGCATCGGCATTGA
* * * *
25894457 TGATA-GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTAGA
1 -GAGAGGCTAGTGTAAGA-CATGTCTGGGACATGGCATCGGCATTGA
* *
25894503 GATGAGTGCTAGTGTAAGACATGTCTGGGGCAT-GCATCAGCCACATT-A
1 GA-GAG-GCTAGTGTAAGACATGTCTGGGACATGGCATC-G--GCATTGA
* *
25894551 TGATA-GCCAGTGTAAGACCATGTCTGGGAC---G-AT--GC---GA
1 -GAGAGGCTAGTGTAAGA-CATGTCTGGGACATGGCATCGGCATTGA
* *
25894588 GATGAGTGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGA
1 GA-GAG-GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCATTGA
* * ** * *
25894634 TGATGATAGCCAGCATAAGACGTGTCTGGGACAT-GCATCAGCACGTAT-A
1 -GA-GA-GGCTAGTGTAAGACATGTCTGGGACATGGCATCGGCA--T-TGA
* * * * *
25894683 CACGAGATCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGA
1 GA-GAG-GCTAGTGTAAGA-CATGTCTGGGACATGGCATCGGCATTGA
* * *
25894731 TGGAGATAGCCAGCGTAAGACCATGTCTGGGACATGGCA
1 --GAGA-GGCTAGTGTAAGA-CATGTCTGGGACATGGCA
25894770 GCAGCAACTT
Statistics
Matches: 265, Mismatches: 56, Indels: 76
0.67 0.14 0.19
Matches are distributed among these distances:
36 2 0.01
37 2 0.01
38 12 0.05
39 12 0.05
40 1 0.00
41 2 0.01
43 2 0.01
44 2 0.01
45 11 0.04
46 33 0.12
47 83 0.31
48 39 0.15
49 56 0.21
50 8 0.03
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (45 bp):
GAGAGGCTAGTGTAAGACATGTCTGGGACATGGCATCGGCATTGA
Found at i:25894485 original size:47 final size:46
Alignment explanation
Indices: 25894419--25894766 Score: 216
Period size: 47 Copynumber: 7.5 Consensus size: 46
25894409 GACGAGGGCT
* * * *
25894419 AGTGTAAGACGTGTTTGGGACATACGTCAGCCACATTATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGATAGCC
* * * * *
25894465 AGTGTAAGACCATGTCTGGGACATGGCATCGGCGTAGA-GATGAGT-GCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGC-CACATTATGA-TAGCC
*
25894513 AGTGTAAGACATGTCTGGGGCATGCATCAGCCACATTATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGATAGCC
* * * *
25894559 AGTGTAAGACCATGTCTGGGAC--G-AT--GCGAGATGA-G-T-GCT
1 AGTGTAAGA-CATGTCTGGGACATGCATCAGCCACATTATGATAGCC
* * *
25894598 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATTATGATAGCC
** * * * * * *
25894645 AGCATAAGACGTGTCTGGGACATGCATCAG-CACGTATACACGAGATCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC--AT-TATGATAGCC
* * * *
25894693 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGATGGA-GATAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCAC-AT-TATGATAGCC
*
25894742 AGCGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
25894767 GCAGCAGCAA
Statistics
Matches: 232, Mismatches: 49, Indels: 40
0.72 0.15 0.12
Matches are distributed among these distances:
38 12 0.05
39 11 0.05
40 2 0.01
41 3 0.01
42 6 0.03
43 2 0.01
44 6 0.03
45 5 0.02
46 34 0.15
47 66 0.28
48 33 0.14
49 41 0.18
50 9 0.04
51 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGATAGCC
Found at i:25894543 original size:94 final size:95
Alignment explanation
Indices: 25894375--25894769 Score: 406
Period size: 94 Copynumber: 4.3 Consensus size: 95
25894365 AGAGCTAGTA
** * * * *
25894375 TAAGACCATGTCTGGGACATGGCATCGGTATTGAGACGAGGGCTAGTGTAAGACGTGTTTGGGAC
1 TAAGACCATGTCTGGGACATGGCATCGGCGTAGAGACGAGTGCTAGTGTAAGACATGTCTGGGAC
* * * *
25894440 ATACGTCAGCCAC-ATTATGATAGCCAGTG
66 ATGCATCAGCCACGATGATGATAGCCAGCG
* *
25894469 TAAGACCATGTCTGGGACATGGCATCGGCGTAGAGATGAGTGCTAGTGTAAGACATGTCTGGGGC
1 TAAGACCATGTCTGGGACATGGCATCGGCGTAGAGACGAGTGCTAGTGTAAGACATGTCTGGGAC
* *
25894534 ATGCATCAGCCAC-ATTATGATAGCCAGTG
66 ATGCATCAGCCACGATGATGATAGCCAGCG
*
25894563 TAAGACCATGTCTGGGAC---G-AT--GC---GAGATGAGTGCTAGTGTAAGACATGTCTGGGAC
1 TAAGACCATGTCTGGGACATGGCATCGGCGTAGAGACGAGTGCTAGTGTAAGACATGTCTGGGAC
* * *
25894619 ATGCATCGGCCTCGATGATGATAGCCAGCA
66 ATGCATCAGCCACGATGATGATAGCCAGCG
* * * * *
25894649 TAAGA-CGTGTCTGGGACAT-GCATCAGCACGTATACACGAGAT-CTAGTGTAAGACCATGTTTG
1 TAAGACCATGTCTGGGACATGGCATC-G-GCGTAGAGACGAG-TGCTAGTGTAAGA-CATGTCTG
* *
25894711 GGACATGGCATCGGCCTCGATGGA-GATAGCCAGCG
62 GGACAT-GCATCAGCCACGAT-GATGATAGCCAGCG
25894746 TAAGACCATGTCTGGGACATGGCA
1 TAAGACCATGTCTGGGACATGGCA
25894770 GCAGCAACTT
Statistics
Matches: 260, Mismatches: 24, Indels: 29
0.83 0.08 0.09
Matches are distributed among these distances:
85 54 0.21
86 18 0.07
87 1 0.00
88 4 0.02
90 2 0.01
91 1 0.00
92 1 0.00
94 102 0.39
95 16 0.06
96 14 0.05
97 29 0.11
98 15 0.06
99 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.23
Consensus pattern (95 bp):
TAAGACCATGTCTGGGACATGGCATCGGCGTAGAGACGAGTGCTAGTGTAAGACATGTCTGGGAC
ATGCATCAGCCACGATGATGATAGCCAGCG
Found at i:25894660 original size:85 final size:87
Alignment explanation
Indices: 25894500--25894766 Score: 294
Period size: 85 Copynumber: 3.0 Consensus size: 87
25894490 GCATCGGCGT
* * * * *
25894500 AGAGATGAGTGCTAGTGTAAGACATGTCTGGGGCATGCATCAGCCAC-ATTATGATAGCCAGTGT
1 AGAGATGAGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGATAGCCAGCGT
25894564 AAGACCATGTCTGGGACGATG-C
66 AAGACCATGTCTGGGAC-ATGAC
*
25894586 -GAGATGAGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGATAGCCAGCAT
1 AGAGATGAGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGATAGCCAGCGT
*
25894650 AAGA-CGTGTCTGGGACATGCATC
66 AAGACCATGTCTGGGACATG-A-C
*
25894673 AGCACGTATACACGAGAT-CTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGATGGA-G
1 AG-A-G-AT----GAG-TGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAT-GATG
25894736 ATAGCCAGCGTAAGACCATGTCTGGGACATG
55 ATAGCCAGCGTAAGACCATGTCTGGGACATG
25894767 GCAGCAGCAA
Statistics
Matches: 154, Mismatches: 10, Indels: 22
0.83 0.05 0.12
Matches are distributed among these distances:
84 3 0.02
85 54 0.35
86 18 0.12
87 1 0.01
88 1 0.01
89 1 0.01
90 1 0.01
91 2 0.01
95 14 0.09
96 14 0.09
97 29 0.19
98 16 0.10
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.22
Consensus pattern (87 bp):
AGAGATGAGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGATAGCCAGCGT
AAGACCATGTCTGGGACATGAC
Found at i:25894731 original size:97 final size:97
Alignment explanation
Indices: 25894596--25894775 Score: 276
Period size: 97 Copynumber: 1.9 Consensus size: 97
25894586 GAGATGAGTG
*
25894596 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAT-GATGATAGCCAGCATAAGA-CGTGT
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGGA-GATAGCCAGCATAAGACCATGT
*
25894659 CTGGGACAT-GCATCAGCACGTATACACGAGAT
65 CTGGGACATGGCAGCAGCACGTATACACGAGAT
* *
25894691 CTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGATGGAGATAGCCAGCGTAAGACCATG
1 CTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGATGGAGATAGCCAGCATAAGACCATG
25894756 TCTGGGACATGGCAGCAGCA
64 TCTGGGACATGGCAGCAGCA
25894776 ACTTAACCCA
Statistics
Matches: 76, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
95 11 0.14
96 13 0.17
97 29 0.38
98 15 0.20
99 8 0.11
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.21
Consensus pattern (97 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGGAGATAGCCAGCATAAGACCATGTC
TGGGACATGGCAGCAGCACGTATACACGAGAT
Found at i:25894769 original size:49 final size:47
Alignment explanation
Indices: 25894601--25894766 Score: 165
Period size: 49 Copynumber: 3.4 Consensus size: 47
25894591 GAGTGCTAGT
*
25894601 GTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGATAGCCAGC
1 GTAAGACATGTCTGGGACATGCATCGGCCTCGATGACGATAGCCAGC
* * * * * * * * *
25894648 ATAAGACGTGTCTGGGACATGCATCAG-CACGTATACACGAGATCTAGT
1 GTAAGACATGTCTGGGACATGCATCGGCCTCG-AT-GACGATAGCCAGC
*
25894696 GTAAGACCATGTTTGGGACATGGCATCGGCCTCGATGGA-GATAGCCAGC
1 GTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAT-GACGATAGCCAGC
25894745 GTAAGACCATGTCTGGGACATG
1 GTAAGA-CATGTCTGGGACATG
25894767 GCAGCAGCAA
Statistics
Matches: 92, Mismatches: 22, Indels: 9
0.75 0.18 0.07
Matches are distributed among these distances:
46 3 0.03
47 26 0.28
48 13 0.14
49 38 0.41
50 9 0.10
51 3 0.03
ACGTcount: A:0.27, C:0.22, G:0.30, T:0.22
Consensus pattern (47 bp):
GTAAGACATGTCTGGGACATGCATCGGCCTCGATGACGATAGCCAGC
Found at i:25895632 original size:55 final size:54
Alignment explanation
Indices: 25895517--25895633 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 54
25895507 CTTAAACTTT
* * *
25895517 TAAA-TCAGTATTGTCCACGGTTAGGCCACACGGGCATGTGCCATAGCCATGTC
1 TAAAGTCAGTATTGCCCACGGGTAGGCCACACGGGCATGTGCCATAGCCATGCC
* * * * *
25895570 TATAAGTCATTATTGCCCACGGGTAGGCCACACGGGCGTGTGTCATGGCCGTGCCC
1 TA-AAGTCAGTATTGCCCACGGGTAGGCCACACGGGCATGTGCCATAGCCATG-CC
25895626 TAAAGTCA
1 TAAAGTCA
25895634 CTATCGCACA
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
53 2 0.04
54 2 0.04
55 46 0.87
56 3 0.06
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.24
Consensus pattern (54 bp):
TAAAGTCAGTATTGCCCACGGGTAGGCCACACGGGCATGTGCCATAGCCATGCC
Found at i:25896337 original size:12 final size:12
Alignment explanation
Indices: 25896320--25896344 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
25896310 GTAGTCATAA
25896320 TACTATATAGTT
1 TACTATATAGTT
25896332 TACTATATAGTT
1 TACTATATAGTT
25896344 T
1 T
25896345 CATTTTTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.08, T:0.52
Consensus pattern (12 bp):
TACTATATAGTT
Found at i:25899691 original size:27 final size:27
Alignment explanation
Indices: 25899660--25899837 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
25899650 TAAATTGTAC
25899660 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
25899687 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
25899713 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
25899741 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
25899769 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
25899796 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
25899823 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
25899838 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:25899774 original size:82 final size:81
Alignment explanation
Indices: 25899661--25899816 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
25899651 AAATTGTACA
* *
25899661 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
25899725 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
25899742 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
25899807 TGCGAGTTGA
65 TGCGAATTGA
25899817 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:25899828 original size:82 final size:81
Alignment explanation
Indices: 25899657--25899837 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
25899647 GATTAAATTG
* *
25899657 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
25899722 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
25899738 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
25899802 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
25899820 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
25899838 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:25907874 original size:27 final size:27
Alignment explanation
Indices: 25907843--25908020 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
25907833 TAAATTGTAC
25907843 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
25907870 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
25907896 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
25907924 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
25907952 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
25907979 AGCACTAAGTGTGTGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
25908006 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
25908021 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 104 0.81
28 25 0.19
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:25907984 original size:82 final size:81
Alignment explanation
Indices: 25907842--25907991 Score: 230
Period size: 82 Copynumber: 1.8 Consensus size: 81
25907832 TTAAATTGTA
* *
25907842 CAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGT
1 CAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGT
25907907 GTGCGAATTGACCATG
66 GTGCGAATTGACCATG
** *
25907923 CAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAA
1 CAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAA
25907987 GTGTG
64 GTGTG
25907992 TGAGTTGATT
Statistics
Matches: 62, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 18 0.29
82 44 0.71
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (81 bp):
CAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGT
GTGCGAATTGACCATG
Found at i:25908010 original size:82 final size:81
Alignment explanation
Indices: 25907840--25908020 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
25907830 GATTAAATTG
* *
25907840 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
25907905 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* ** *
25907921 TGCAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* * **
25907985 AAGTGTGTGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
25908003 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
25908021 GACTCAATAT
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 19 0.22
82 66 0.78
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:25909484 original size:19 final size:19
Alignment explanation
Indices: 25909456--25909494 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
25909446 CAGATTGAAC
*
25909456 CTTAGGAATAGTCAGGATA
1 CTTAGAAATAGTCAGGATA
*
25909475 CTTAGAAATAGTTAGGATA
1 CTTAGAAATAGTCAGGATA
25909494 C
1 C
25909495 AAGTGACATG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.10, G:0.23, T:0.28
Consensus pattern (19 bp):
CTTAGAAATAGTCAGGATA
Found at i:25909542 original size:21 final size:20
Alignment explanation
Indices: 25909518--25909594 Score: 55
Period size: 21 Copynumber: 3.5 Consensus size: 20
25909508 TTAGGAATTA
25909518 TTGTGATCTGAACTCATTGAG
1 TTGTGATCTGAACTCA-TGAG
* ** *
25909539 TTGTGGTCTGAGTTCATGATAT
1 TTGTGATCTGAACTCATG--AG
25909561 TTGTGACATCTGAACTCACTGAG
1 TTGTG--ATCTGAACTCA-TGAG
*
25909584 TTGTGGTCTGA
1 TTGTGATCTGA
25909595 GTTCATGATT
Statistics
Matches: 42, Mismatches: 9, Indels: 10
0.69 0.15 0.16
Matches are distributed among these distances:
20 2 0.05
21 18 0.43
22 6 0.14
23 6 0.14
24 8 0.19
25 2 0.05
ACGTcount: A:0.21, C:0.14, G:0.26, T:0.39
Consensus pattern (20 bp):
TTGTGATCTGAACTCATGAG
Found at i:25909613 original size:45 final size:45
Alignment explanation
Indices: 25909523--25909613 Score: 148
Period size: 45 Copynumber: 2.0 Consensus size: 45
25909513 AATTATTGTG
* *
25909523 ATCTGAACTCATTGAGTTGTGGTCTGAGTTCATGATATTTGTGAC
1 ATCTGAACTCACTGAGTTGTGGTCTGAGTTCATGATATTTATGAC
25909568 ATCTGAACTCACTGAGTTGTGGTCTGAGTTCATGAT-TTATATGAC
1 ATCTGAACTCACTGAGTTGTGGTCTGAGTTCATGATATT-TATGAC
25909613 A
1 A
25909614 CATGTTTTGA
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
44 2 0.05
45 41 0.95
ACGTcount: A:0.24, C:0.14, G:0.23, T:0.38
Consensus pattern (45 bp):
ATCTGAACTCACTGAGTTGTGGTCTGAGTTCATGATATTTATGAC
Found at i:25917307 original size:10 final size:10
Alignment explanation
Indices: 25917292--25917324 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
25917282 AGTTTGAACC
25917292 TTAGGAATAG
1 TTAGGAATAG
*
25917302 TTAGG-ATAC
1 TTAGGAATAG
25917311 TTAGGAATAG
1 TTAGGAATAG
25917321 TTAG
1 TTAG
25917325 ATGCAAGTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
9 8 0.40
10 12 0.60
ACGTcount: A:0.36, C:0.03, G:0.27, T:0.33
Consensus pattern (10 bp):
TTAGGAATAG
Found at i:25917414 original size:45 final size:45
Alignment explanation
Indices: 25917362--25917447 Score: 136
Period size: 45 Copynumber: 1.9 Consensus size: 45
25917352 TTGTGATTTG
** *
25917362 AACTCATTGAGTTGTGGTCTGTGTTCATGATATTTGTGACATCTA
1 AACTCATTGAGTTGTGGTCTAAGTTCATGATATATGTGACATCTA
*
25917407 AACTCATTGAGTTGTGGTCTAAGTTCATGATGTATGTGACA
1 AACTCATTGAGTTGTGGTCTAAGTTCATGATATATGTGACA
25917448 CATGTTTTGG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.24, C:0.13, G:0.23, T:0.40
Consensus pattern (45 bp):
AACTCATTGAGTTGTGGTCTAAGTTCATGATATATGTGACATCTA
Found at i:25917669 original size:27 final size:27
Alignment explanation
Indices: 25917602--25917670 Score: 84
Period size: 27 Copynumber: 2.6 Consensus size: 27
25917592 AGCATTGGGC
* * *
25917602 AAAACAGTCATTTCACCTCACAAGGGT
1 AAAACAGTCATTTTACCCCACAAGGGA
* *
25917629 AAAACGGTCATTTTACCCCATAAGGGA
1 AAAACAGTCATTTTACCCCACAAGGGA
*
25917656 AAAATAGTCATTTTA
1 AAAACAGTCATTTTA
25917671 TTAATCTCGG
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.26
Consensus pattern (27 bp):
AAAACAGTCATTTTACCCCACAAGGGA
Found at i:25922360 original size:18 final size:17
Alignment explanation
Indices: 25922330--25922363 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
25922320 TTTTGGGCCG
*
25922330 TGTGGGCCGCACGGGCA
1 TGTGGGCCACACGGGCA
25922347 TGTGGGCCTACACGGGC
1 TGTGGGCC-ACACGGGC
25922364 TGACAATATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.12, C:0.29, G:0.44, T:0.15
Consensus pattern (17 bp):
TGTGGGCCACACGGGCA
Found at i:25932951 original size:41 final size:41
Alignment explanation
Indices: 25932906--25933193 Score: 315
Period size: 41 Copynumber: 7.0 Consensus size: 41
25932896 AGAATAATGA
* *
25932906 TGAATTGCACATACGTGCCCCTGTTTATACTTCGGTACCCT
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
** ** *
25932947 TGAATTGCATGTATATGCCCCTGTTTGTACTTCAGTACCCC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * * *
25932988 TGAATTACACATAGGTGCCCCTATTTGTACTTTGGTACCCC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * * *
25933029 AGAATTGCACATACATGCCCCTTTTTGTACTTCGATACCCC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
** * * ** *
25933070 TGAATTGCACATATATGCCCCTCTTTGTTCTTCAATGCCCC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * * *
25933111 TAAATTGCACATATGTGCCCCTATTTGTACTTCGGTACCCT
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * *
25933152 TAAATTGCACATCCGTGCCCTTGTTTGTACTTCGGTACCCC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
25933193 T
1 T
25933194 AGATGTACTT
Statistics
Matches: 206, Mismatches: 41, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 206 1.00
ACGTcount: A:0.20, C:0.29, G:0.15, T:0.35
Consensus pattern (41 bp):
TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
Found at i:25933111 original size:123 final size:124
Alignment explanation
Indices: 25932907--25933193 Score: 391
Period size: 123 Copynumber: 2.3 Consensus size: 124
25932897 GAATAATGAT
* * * ** *
25932907 GAATTGCACATACGTGCCCCTGTTTATACTTCGGTACCCTTGAATTGCATGTATATGCCCCTGTT
1 GAATTGCACATACGTGCCCCTTTTTGTACTTCGGTACCCCTGAATTGCACATATATGCCCCTCTT
* * *
25932972 TGTACTTCAGTACCCCTGAATTACACATAGGTGCCCCTATTTGTACTTTGGTACCC-CA
66 TGTACTTCAATACCCCTAAATTACACATAGGTGCCCCTATTTGTACTTCGGTACCCTCA
* *
25933030 GAATTGCACATACATGCCCCTTTTTGTACTTCGATACCCCTGAATTGCACATATATGCCCCTCTT
1 GAATTGCACATACGTGCCCCTTTTTGTACTTCGGTACCCCTGAATTGCACATATATGCCCCTCTT
* * * * *
25933095 TGTTCTTCAATGCCCCTAAATTGCACATATGTGCCCCTATTTGTACTTCGGTACCCTTA
66 TGTACTTCAATACCCCTAAATTACACATAGGTGCCCCTATTTGTACTTCGGTACCCTCA
*
25933154 -AATTGCACATCCGTG-CCCTTGTTTGTACTTCGGTACCCCT
1 GAATTGCACATACGTGCCCCTT-TTTGTACTTCGGTACCCCT
25933194 AGATGTACTT
Statistics
Matches: 143, Mismatches: 19, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
122 5 0.03
123 137 0.96
124 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.15, T:0.35
Consensus pattern (124 bp):
GAATTGCACATACGTGCCCCTTTTTGTACTTCGGTACCCCTGAATTGCACATATATGCCCCTCTT
TGTACTTCAATACCCCTAAATTACACATAGGTGCCCCTATTTGTACTTCGGTACCCTCA
Found at i:25937324 original size:13 final size:14
Alignment explanation
Indices: 25937306--25937365 Score: 58
Period size: 13 Copynumber: 4.5 Consensus size: 14
25937296 TATTTAAAAA
25937306 TTATTTTCTGTG-T
1 TTATTTTCTGTGAT
25937319 TTATTTTCTGTGAAT
1 TTATTTTCTGTG-AT
25937334 TTA-TTTCTGTGA-
1 TTATTTTCTGTGAT
*
25937346 -AATTTTC-GTGAT
1 TTATTTTCTGTGAT
25937358 TTAATTTT
1 TT-ATTTT
25937366 GTCGTTTGAG
Statistics
Matches: 39, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
11 5 0.13
12 4 0.10
13 13 0.33
14 13 0.33
15 4 0.10
ACGTcount: A:0.18, C:0.07, G:0.13, T:0.62
Consensus pattern (14 bp):
TTATTTTCTGTGAT
Found at i:25937350 original size:15 final size:15
Alignment explanation
Indices: 25937306--25937346 Score: 61
Period size: 13 Copynumber: 2.9 Consensus size: 15
25937296 TATTTAAAAA
25937306 TTATTTTCTGTG--T
1 TTATTTTCTGTGAAT
25937319 TTATTTTCTGTGAAT
1 TTATTTTCTGTGAAT
25937334 TTA-TTTCTGTGAA
1 TTATTTTCTGTGAA
25937347 ATTTTCGTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
13 12 0.46
14 10 0.38
15 4 0.15
ACGTcount: A:0.17, C:0.07, G:0.15, T:0.61
Consensus pattern (15 bp):
TTATTTTCTGTGAAT
Found at i:25945439 original size:14 final size:15
Alignment explanation
Indices: 25945401--25945441 Score: 52
Period size: 13 Copynumber: 2.9 Consensus size: 15
25945391 TATTTAAAAA
25945401 TTATTTTCTGTG--T
1 TTATTTTCTGTGAAT
*
25945414 TTATTTTTTGTGAAT
1 TTATTTTCTGTGAAT
25945429 TTA-TTTCTGTGAA
1 TTATTTTCTGTGAA
25945442 ATTTTCGTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 11 0.46
14 9 0.38
15 4 0.17
ACGTcount: A:0.17, C:0.05, G:0.15, T:0.63
Consensus pattern (15 bp):
TTATTTTCTGTGAAT
Found at i:25947515 original size:25 final size:27
Alignment explanation
Indices: 25947478--25947531 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 27
25947468 TCAAACATGC
25947478 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
* **
25947504 ATTTCGGT-AATTTTGCACCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
25947530 AT
1 AT
25947532 AACAGTAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.37
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACACCTAGGGGT
Found at i:25947539 original size:26 final size:27
Alignment explanation
Indices: 25947495--25947570 Score: 82
Period size: 26 Copynumber: 2.8 Consensus size: 27
25947485 TCAATTTAAC
* *
25947495 CCTAGGGGTATTTCGGTAATTTTGC-A
1 CCTAGGGGTATTACAGTAATTTTGCAA
* *
25947521 CCTAGGGGTATAACAGTAATTTTTCATA
1 CCTAGGGGTATTACAGTAATTTTGCA-A
* *
25947549 CATAGGGGTATTATAGTAATTT
1 CCTAGGGGTATTACAGTAATTT
25947571 AGCTGTTTTT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 21 0.51
28 20 0.49
ACGTcount: A:0.28, C:0.12, G:0.22, T:0.38
Consensus pattern (27 bp):
CCTAGGGGTATTACAGTAATTTTGCAA
Found at i:25949048 original size:26 final size:26
Alignment explanation
Indices: 25949017--25949124 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
25949007 TCAAATGCCC
*
25949017 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
25949043 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
25949069 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
25949095 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
25949121 ATCA
1 ATCA
25949125 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:25952792 original size:46 final size:46
Alignment explanation
Indices: 25952725--25952899 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
25952715 TGTAACCCGC
25952725 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
25952771 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCACAT
* * * * * * *
25952821 CTC-T---CGAACTCAGACTCAACTCAACGAGTTTGGACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
*
25952864 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
25952900 ATGCCCAAAT
Statistics
Matches: 108, Mismatches: 10, Indels: 22
0.77 0.07 0.16
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 1 0.01
46 62 0.57
47 25 0.23
48 1 0.01
49 1 0.01
50 6 0.06
51 4 0.04
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
Found at i:25952841 original size:93 final size:93
Alignment explanation
Indices: 25952733--25952904 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
25952723 GCCCATAAGT
* * *
25952733 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
25952798 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * *
25952826 GAACTCAGACTCAACTCAACGAGTTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
*
25952891 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
25952905 CAAATATCCT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:25958273 original size:27 final size:27
Alignment explanation
Indices: 25958234--25958294 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
25958224 AATTTTGTGC
* * *
25958234 AAGA-TATATATATATAATATGATGTT
1 AAGAGTATACATATAAAATATAATGTT
25958260 AAGAGTATACATATAAAATATAATGTT
1 AAGAGTATACATATAAAATATAATGTT
*
25958287 AAAAGTAT
1 AAGAGTAT
25958295 GTATGCATAG
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
26 4 0.13
27 26 0.87
ACGTcount: A:0.51, C:0.02, G:0.11, T:0.36
Consensus pattern (27 bp):
AAGAGTATACATATAAAATATAATGTT
Found at i:25958777 original size:27 final size:28
Alignment explanation
Indices: 25958729--25958795 Score: 75
Period size: 27 Copynumber: 2.4 Consensus size: 28
25958719 AAATATATAT
25958729 AATA-ATAAATATAACAACAATATTGAA
1 AATACATAAATATAACAACAATATTGAA
* * *
25958756 AATACATATATATAAC-ATAATATTTAA
1 AATACATAAATATAACAACAATATTGAA
*
25958783 AAGACATACAATA
1 AATACATA-AATA
25958796 AATACATTTA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
27 20 0.61
28 13 0.39
ACGTcount: A:0.60, C:0.09, G:0.03, T:0.28
Consensus pattern (28 bp):
AATACATAAATATAACAACAATATTGAA
Found at i:25960263 original size:44 final size:44
Alignment explanation
Indices: 25960178--25960283 Score: 115
Period size: 44 Copynumber: 2.4 Consensus size: 44
25960168 GATATATGTC
* * *
25960178 TTGTAGCTTTAATCTACTTCAATGTAACTTCAAAGATATGAGAT
1 TTGTAGCTTTAATCTGCTTCAATGCAACTTCAAAGAGATGAGAT
* * * *
25960222 TTGTAGCTTTGATCTGCTTCCATGCAGCTTCAGAA-AGATGAGGT
1 TTGTAGCTTTAATCTGCTTCAATGCAACTTCA-AAGAGATGAGAT
**
25960266 TTACAGCTTTAATCTGCT
1 TTGTAGCTTTAATCTGCT
25960284 CTTCTATCGC
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
44 49 0.96
45 2 0.04
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (44 bp):
TTGTAGCTTTAATCTGCTTCAATGCAACTTCAAAGAGATGAGAT
Found at i:25960605 original size:55 final size:55
Alignment explanation
Indices: 25960488--25960692 Score: 308
Period size: 55 Copynumber: 3.8 Consensus size: 55
25960478 GCGATCTTGA
* * * *
25960488 GCTCAACTCATTTCTCGCAATATGAATTGACTCTTT-AAAAATAGATATTAAAAG
1 GCTCAACTCACTTCTCGCAATATGAGTTGACTTTTTGAAAAATAGAAATTAAAAG
*
25960542 GCTCAACTCACATCTCGCAATATGAGTTGACTTTTTGAAAAATAGAAATTAAAAG
1 GCTCAACTCACTTCTCGCAATATGAGTTGACTTTTTGAAAAATAGAAATTAAAAG
* *
25960597 GCTCAACTCA-TCTCTTGCAATATGAGTTGACTTTTTGAAAAACAGAAATTAAAAG
1 GCTCAACTCACT-TCTCGCAATATGAGTTGACTTTTTGAAAAATAGAAATTAAAAG
*
25960652 GCTCAACTCACTTCTCGTAATATGAGTTGA-TTTTTGAAAAA
1 GCTCAACTCACTTCTCGCAATATGAGTTGACTTTTTGAAAAA
25960693 CATAAATTGA
Statistics
Matches: 138, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
54 43 0.31
55 94 0.68
56 1 0.01
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.32
Consensus pattern (55 bp):
GCTCAACTCACTTCTCGCAATATGAGTTGACTTTTTGAAAAATAGAAATTAAAAG
Found at i:25960799 original size:86 final size:85
Alignment explanation
Indices: 25960650--25961232 Score: 361
Period size: 86 Copynumber: 6.8 Consensus size: 85
25960640 AGAAATTAAA
* * * *
25960650 AGGCTCAACTCACTTCTCGTAATATGAGTTGATTTTTGAAAAACATAAATTGAAAACAGAAATT-
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATT-AAAACAGAAATTG
*
25960714 AAAATTACCTCAGCGTGCCCCG
65 AAAA-TACCTCAGCGTGCCACG
* *
25960736 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGGAAAAATAGAAATTAAAGACAAAAATTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTAAA-ACAGAAATTG
*
25960801 AAAATACCTCAGCGTGCCATG
65 AAAATACCTCAGCGTGCCACG
25960822 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAT-G-AATTAAAACAGAAATTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA-ATAGAAATTAAAACAGAAATT-
** * *** *
25960885 GAAGAATAGAAATTGAAAATACCTCAGCG
64 GAA-AAT---ACCTCAGCGT-GC-CA-CG
* * * * *
25960914 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG--AAA-AG-CA--GAAACAG
1 AG-GCT----C-AA-CTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTAAAACAG
* *
25960973 AAATT-AAAATTACCTCAGCATGTCC-TG
59 AAATTGAAAA-TACCTCAGCGTG-CCACG
*
25961000 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAACAT--AAATTGAAAGAACAGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-T-TTTTGAAAAATAGAAATT--AA-AACAGAA
* * *
25961063 ATTGGAAATACCTCAGTATGTG-AACCG
61 ATTGAAAATACCTCAG--CGTGCCA-CG
* ** * * * *
25961090 AGGTTCAACTCATATCTCGCAATGTGAGTTAATTTTT------TTG--A--AAAACAGAAATTAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTAAAACAGAAATTGA
* * *
25961145 AATTACCTCAGCATGCCCCG
66 AAATACCTCAGCGTGCCACG
* * * *
25961165 AGGATCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAGTATAAATTAAAAACAGAAATT-
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATT-AAAACAGAAATTG
25961229 AAAA
65 AAAA
25961233 GGCTCAACTC
Statistics
Matches: 384, Mismatches: 62, Indels: 103
0.70 0.11 0.19
Matches are distributed among these distances:
75 35 0.09
77 20 0.05
78 2 0.01
79 24 0.06
80 2 0.01
81 7 0.02
82 2 0.01
83 4 0.01
84 8 0.02
85 18 0.05
86 128 0.33
87 7 0.02
88 23 0.06
89 14 0.04
90 31 0.08
91 4 0.01
92 5 0.01
93 2 0.01
94 11 0.03
96 3 0.01
97 3 0.01
98 1 0.00
99 30 0.08
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (85 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTAAAACAGAAATTGA
AAATACCTCAGCGTGCCACG
Found at i:25961023 original size:79 final size:78
Alignment explanation
Indices: 25960892--25961207 Score: 302
Period size: 79 Copynumber: 3.9 Consensus size: 78
25960882 TTGGAAGAAT
*
25960892 AGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
25960957 TGAAAAGCAGAAAC
66 TGAAAAG-AGAAAC
25960971 AGAAATT-AAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTC
1 AGAAATTGAAAA-TACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-T-
*
25961035 TTTTGAAACATAAATTGAAAGAAC
63 TTTTG----A-AAA--GAGA-AAC
* * * ** * *
25961059 AGAAATTGGAAATACCTCAGTATGTGAACC-GAGGTTCAACTCATATCTCGCAATGTGAGTTAAT
1 AGAAATTGAAAATACCTCAGCATGT---CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
** *
25961123 TTTT---TTGAAAAAC
63 TTTTGAAAAGAGAAAC
* * * *
25961136 AGAAATT-AAAATTACCTCAGCATGCCCCGAGGATCAACTCACCTCTCACAATATGAGTTGATTT
1 AGAAATTGAAAA-TACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
25961200 TTGAAAAG
65 TTGAAAAG
25961208 TATAAATTAA
Statistics
Matches: 195, Mismatches: 22, Indels: 41
0.76 0.09 0.16
Matches are distributed among these distances:
74 2 0.01
75 32 0.16
76 3 0.02
77 21 0.11
78 9 0.05
79 55 0.28
80 1 0.01
81 5 0.03
85 1 0.01
86 3 0.02
87 2 0.01
88 27 0.14
89 4 0.02
90 28 0.14
91 2 0.01
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (78 bp):
AGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
TGAAAAGAGAAAC
Found at i:25966564 original size:37 final size:37
Alignment explanation
Indices: 25966514--25966592 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
25966504 TTATTACGAA
* * *
25966514 GTCTTACCCGGACATAATCTCCACAAGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACAAGAAGTCATCGG
* *
25966551 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACAAGAAGTCATCGG
25966588 GTCTT
1 GTCTT
25966593 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACAAGAAGTCATCGG
Found at i:25966789 original size:47 final size:47
Alignment explanation
Indices: 25966711--25967133 Score: 650
Period size: 47 Copynumber: 8.8 Consensus size: 47
25966701 CCCTTCGGGA
* * * * *
25966711 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCA-TTAGGC
* *
25966758 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25966805 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25966852 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25966899 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATATAAGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACAT----C------GGCCATTAGGC
*
25966956 CTTATCACATATATACACTTTCACATTCATCACATCGGCCGTTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25967003 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25967050 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25967097 CTTATCACATATATACACTTTCACATTCATCACATCG
1 CTTATCACATATATACACTTTCACATTCATCACATCG
25967134 AATCCTAAAT
Statistics
Matches: 350, Mismatches: 15, Indels: 22
0.90 0.04 0.06
Matches are distributed among these distances:
46 2 0.01
47 300 0.86
51 1 0.00
53 1 0.00
57 46 0.13
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:25967039 original size:198 final size:198
Alignment explanation
Indices: 25966762--25967133 Score: 735
Period size: 198 Copynumber: 1.9 Consensus size: 198
25966752 CTCAGCCCTG
25966762 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
25966827 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTTATCACATCGGCC
66 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTTATCACATCGGCC
25966892 ATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATATAAGGCCATTAGGCC
131 ATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATATAAGGCCATTAGGCC
25966957 TTA
196 TTA
*
25966960 TCACATATATACACTTTCACATTCATCACATCGGCCGTTAGGCCTTATCACATATATACACTTTC
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
25967025 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTTATCACATCGGCC
66 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTTATCACATCGGCC
25967090 ATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
131 ATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
25967134 AATCCTAAAT
Statistics
Matches: 173, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
198 173 1.00
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.32
Consensus pattern (198 bp):
TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTTATCACATCGGCC
ATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATATAAGGCCATTAGGCC
TTA
Found at i:25967068 original size:151 final size:141
Alignment explanation
Indices: 25966711--25967133 Score: 650
Period size: 151 Copynumber: 2.9 Consensus size: 141
25966701 CCCTTCGGGA
* * * * * * *
25966711 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCA-GCCCTGTCACATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCA-TTAGGCCTTATCACATATATACA
25966775 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
65 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
25966840 CGGCCATTAGGC
130 CGGCCATTAGGC
*
25966852 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
25966917 TTTCACATTCATCACATCGGCCATATAAGGCCATTAGGCCTTATCACATATATACACTTTCACAT
66 TTTCACATTCATCACAT----C------GGCCATTAGGCCTTATCACATATATACACTTTCACAT
*
25966982 TCATCACATCGGCCGTTAGGC
121 TCATCACATCGGCCATTAGGC
25967003 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
25967068 TTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
25967133 G
131 G
25967134 AATCCTAAAT
Statistics
Matches: 260, Mismatches: 11, Indels: 22
0.89 0.04 0.08
Matches are distributed among these distances:
140 2 0.01
141 119 0.46
145 1 0.00
147 1 0.00
151 137 0.53
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:25970397 original size:27 final size:27
Alignment explanation
Indices: 25970366--25970543 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
25970356 TAAATTGTAC
25970366 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
25970393 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
25970419 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
25970447 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
25970475 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
25970502 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
25970529 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
25970544 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:25970480 original size:82 final size:81
Alignment explanation
Indices: 25970367--25970522 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
25970357 AAATTGTACA
* *
25970367 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
25970431 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
25970448 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
25970513 TGCGAGTTGA
65 TGCGAATTGA
25970523 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:25970534 original size:82 final size:81
Alignment explanation
Indices: 25970363--25970543 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
25970353 GATTAAATTG
* *
25970363 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
25970428 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
25970444 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
25970508 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
25970526 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
25970544 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:25978477 original size:27 final size:27
Alignment explanation
Indices: 25978446--25978623 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
25978436 TAAATTGTAC
25978446 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
25978473 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
25978499 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
25978527 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
25978555 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
25978582 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
25978609 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
25978624 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:25978560 original size:82 final size:81
Alignment explanation
Indices: 25978447--25978602 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
25978437 AAATTGTACA
* *
25978447 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
25978511 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
25978528 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
25978593 TGCGAGTTGA
65 TGCGAATTGA
25978603 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:25978614 original size:82 final size:81
Alignment explanation
Indices: 25978443--25978623 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
25978433 GATTAAATTG
* *
25978443 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
25978508 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
25978524 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
25978588 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
25978606 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
25978624 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Done.