Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 79 of 344
Found at i:25986126 original size:22 final size:22
Alignment explanation
Indices: 25986101--25986144 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
25986091 ACACTTGATC
25986101 TTGCTACAACCTTTTGTTTCTT
1 TTGCTACAACCTTTTGTTTCTT
25986123 TTGCTACAACCTTTTGTTTCTT
1 TTGCTACAACCTTTTGTTTCTT
25986145 ACTTCGCCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.14, C:0.23, G:0.09, T:0.55
Consensus pattern (22 bp):
TTGCTACAACCTTTTGTTTCTT
Found at i:25987327 original size:28 final size:28
Alignment explanation
Indices: 25987296--25987368 Score: 101
Period size: 28 Copynumber: 2.6 Consensus size: 28
25987286 GAGTTGTGGT
*
25987296 TTAAAGTTTAGGGATTAGTGGGTAAAGG
1 TTAAAGGTTAGGGATTAGTGGGTAAAGG
* *
25987324 TTAAGGGTTATGGATTAGTGGGTAAAGG
1 TTAAAGGTTAGGGATTAGTGGGTAAAGG
* *
25987352 TTAAGGGTTATGGATTA
1 TTAAAGGTTAGGGATTA
25987369 CGGGTTTAAG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.30, C:0.00, G:0.36, T:0.34
Consensus pattern (28 bp):
TTAAAGGTTAGGGATTAGTGGGTAAAGG
Found at i:25987394 original size:29 final size:27
Alignment explanation
Indices: 25987320--25987413 Score: 116
Period size: 29 Copynumber: 3.3 Consensus size: 27
25987310 TTAGTGGGTA
* *
25987320 AAGGTTAAGGGTTATGGATTAGTGGGTA
1 AAGGTTAAGGGTTATGGATTAG-GGTTT
25987348 AAGGTTAAGGGTTATGGATTACGGGTTT
1 AAGGTTAAGGGTTATGGATTA-GGGTTT
*
25987376 AAGGATTAAGGGTCATGGATTATGGGTTT
1 AAGG-TTAAGGGTTATGGATTA-GGGTTT
25987405 AATGGTTAA
1 AA-GGTTAA
25987414 AGGGATAGGG
Statistics
Matches: 59, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
28 28 0.47
29 29 0.49
30 2 0.03
ACGTcount: A:0.29, C:0.02, G:0.35, T:0.34
Consensus pattern (27 bp):
AAGGTTAAGGGTTATGGATTAGGGTTT
Found at i:25987397 original size:14 final size:14
Alignment explanation
Indices: 25987324--25987403 Score: 72
Period size: 14 Copynumber: 5.6 Consensus size: 14
25987314 TGGGTAAAGG
25987324 TTAAGGGTTATGGA
1 TTAAGGGTTATGGA
* * *
25987338 TTAGTGGGTAAAGG-
1 TTA-AGGGTTATGGA
25987352 TTAAGGGTTATGGA
1 TTAAGGGTTATGGA
* *
25987366 TTACGGGTTTAAGGA
1 TTAAGGG-TTATGGA
*
25987381 TTAAGGGTCATGGA
1 TTAAGGGTTATGGA
*
25987395 TTATGGGTT
1 TTAAGGGTT
25987404 TAATGGTTAA
Statistics
Matches: 50, Mismatches: 13, Indels: 6
0.72 0.19 0.09
Matches are distributed among these distances:
13 7 0.14
14 24 0.48
15 19 0.38
ACGTcount: A:0.26, C:0.03, G:0.36, T:0.35
Consensus pattern (14 bp):
TTAAGGGTTATGGA
Found at i:25987483 original size:7 final size:7
Alignment explanation
Indices: 25987473--25987599 Score: 53
Period size: 7 Copynumber: 17.6 Consensus size: 7
25987463 TGGGAAAGGA
25987473 GTTTATG
1 GTTTATG
25987480 GTTTATG
1 GTTTATG
*
25987487 AGTTAATG
1 -GTTTATG
* *
25987495 TTTTAAG
1 GTTTATG
25987502 GTTTA-G
1 GTTTATG
25987508 AGATTT-TG
1 -G-TTTATG
25987516 GTTTATG
1 GTTTATG
*
25987523 GTTTAAG
1 GTTTATG
* **
25987530 GGTTGGG
1 GTTTATG
*
25987537 GTTTAAG
1 GTTTATG
*
25987544 GTTTAGG
1 GTTTATG
*
25987551 GGTTAGTG
1 GTTTA-TG
* *
25987559 GATTAGG
1 GTTTATG
25987566 GTTTATG
1 GTTTATG
25987573 GTTTCATG
1 GTTT-ATG
*
25987581 ATTTA-G
1 GTTTATG
25987587 GTATTTATG
1 G--TTTATG
25987596 GTTT
1 GTTT
25987600 GGGGTTTAAA
Statistics
Matches: 89, Mismatches: 21, Indels: 20
0.68 0.16 0.15
Matches are distributed among these distances:
6 5 0.06
7 57 0.64
8 25 0.28
9 2 0.02
ACGTcount: A:0.20, C:0.01, G:0.31, T:0.48
Consensus pattern (7 bp):
GTTTATG
Found at i:25987525 original size:21 final size:22
Alignment explanation
Indices: 25987473--25987527 Score: 60
Period size: 21 Copynumber: 2.5 Consensus size: 22
25987463 TGGGAAAGGA
25987473 GTTTATGGTTTATGAGTTAATG
1 GTTTATGGTTTATGAGTTAATG
* * *
25987495 TTTTAAGGTTTA-GAGATT-TTG
1 GTTTATGGTTTATGAG-TTAATG
25987516 GTTTATGGTTTA
1 GTTTATGGTTTA
25987528 AGGGTTGGGG
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
21 15 0.56
22 12 0.44
ACGTcount: A:0.22, C:0.00, G:0.25, T:0.53
Consensus pattern (22 bp):
GTTTATGGTTTATGAGTTAATG
Found at i:25987539 original size:21 final size:21
Alignment explanation
Indices: 25987515--25987554 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
25987505 TAGAGATTTT
*
25987515 GGTTTATGGTTTAAGGGTTGG
1 GGTTTAAGGTTTAAGGGTTGG
*
25987536 GGTTTAAGGTTTAGGGGTT
1 GGTTTAAGGTTTAAGGGTT
25987555 AGTGGATTAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.15, C:0.00, G:0.42, T:0.42
Consensus pattern (21 bp):
GGTTTAAGGTTTAAGGGTTGG
Found at i:25987907 original size:26 final size:27
Alignment explanation
Indices: 25987834--25987908 Score: 109
Period size: 26 Copynumber: 2.9 Consensus size: 27
25987824 AATAATTTAA
*
25987834 AATTTTAAAGATTTCAAA-TTTAGAAT
1 AATTTTCAAGATTTCAAATTTTAGAAT
*
25987860 AAATTTCAAGATTTCAAATTTTA-AAT
1 AATTTTCAAGATTTCAAATTTTAGAAT
*
25987886 AATTTTCAATATTTCAAATTTTA
1 AATTTTCAAGATTTCAAATTTTA
25987909 TCTAATTCTT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 40 0.91
27 4 0.09
ACGTcount: A:0.44, C:0.07, G:0.04, T:0.45
Consensus pattern (27 bp):
AATTTTCAAGATTTCAAATTTTAGAAT
Found at i:25988052 original size:18 final size:17
Alignment explanation
Indices: 25988021--25988055 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
25988011 TAGTTGATTG
*
25988021 TTTTTTAATTTATATTA
1 TTTTTAAATTTATATTA
25988038 TTTTTAAATTATATATTA
1 TTTTTAAATT-TATATTA
25988056 AATAAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
TTTTTAAATTTATATTA
Found at i:25988595 original size:14 final size:14
Alignment explanation
Indices: 25988561--25988599 Score: 62
Period size: 13 Copynumber: 2.9 Consensus size: 14
25988551 ACCATAAGTG
25988561 TTTTTCCCCTAAAA
1 TTTTTCCCCTAAAA
*
25988575 -CTTTCCCCTAAAA
1 TTTTTCCCCTAAAA
25988588 TTTTTCCCCTAA
1 TTTTTCCCCTAA
25988600 CCCTAAAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
13 12 0.55
14 10 0.45
ACGTcount: A:0.26, C:0.33, G:0.00, T:0.41
Consensus pattern (14 bp):
TTTTTCCCCTAAAA
Found at i:25990988 original size:23 final size:23
Alignment explanation
Indices: 25990958--25991007 Score: 91
Period size: 23 Copynumber: 2.2 Consensus size: 23
25990948 AACATTAATC
*
25990958 AAATGTATGAATTGCAGCCCTTT
1 AAATGTATAAATTGCAGCCCTTT
25990981 AAATGTATAAATTGCAGCCCTTT
1 AAATGTATAAATTGCAGCCCTTT
25991004 AAAT
1 AAAT
25991008 AAACTTGAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34
Consensus pattern (23 bp):
AAATGTATAAATTGCAGCCCTTT
Found at i:25991711 original size:241 final size:241
Alignment explanation
Indices: 25991140--25992106 Score: 1812
Period size: 241 Copynumber: 4.0 Consensus size: 241
25991130 ATGAATAAAT
* *
25991140 TTTATTACCATGCAGCTTGCTTGTCTATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
1 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
25991205 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
66 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
25991270 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
131 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
25991335 AAAAAGACTT-AAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
196 AAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
25991380 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
1 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
*
25991445 ATTTTAAATATTTTAAAGGTTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
66 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
*
25991510 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAATGCCACGTATGATGAATCTTAAAAAATTC
131 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
25991575 AAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
196 AAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
25991621 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
1 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
*
25991686 ATTTTAAATATTTTAAAGATTCAAAGTATGTAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
66 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
*
25991751 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAATGCCACGTATGATGAATCTTAAAAAATTC
131 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
25991816 AAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
196 AAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
*
25991862 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAAACTT
1 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
* * * *
25991927 ATTTTAAATATTTTAAATATTCAGAGTATATAGGCTGGAAACCTGACGAGTTGCCTTATATCGAA
66 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
*
25991992 CTATAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
131 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
25992057 AAAAAGACTTG-AAAAAGTTCTATCGAGCTCATTTACTATTGAATA
196 AAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
25992102 TTTAT
1 TTTAT
25992107 ATAACCTTAA
Statistics
Matches: 712, Mismatches: 14, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
240 240 0.34
241 472 0.66
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.33
Consensus pattern (241 bp):
TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
AAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
Found at i:25992074 original size:481 final size:481
Alignment explanation
Indices: 25991140--25992106 Score: 1810
Period size: 481 Copynumber: 2.0 Consensus size: 481
25991130 ATGAATAAAT
*
25991140 TTTATTACCATGCAGCTTGCTTGTCTATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
1 TTTATTACCATGCAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
25991205 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
66 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
25991270 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
131 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
25991335 AAAAAGACTTAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATTACCATGTAGCTTGC
196 AAAAAGACTTAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATTACCATGTAGCTTGC
* *
25991400 TTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGGT
261 TTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAAACTTATTTTAAATATTTTAAAGAT
* * *
25991465 TCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATGGATCC
326 TCAAAGTATATAGGCTGGAAACCTGACGAGTTGCCTTATATCGAACTATAAGATATAATGGATCC
*
25991530 TCCCTAGGTGTAACAATGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTT
391 TCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTT
25991595 CTATCGAGCTCATTTACTATTGAATA
456 CTATCGAGCTCATTTACTATTGAATA
*
25991621 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
1 TTTATTACCATGCAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
*
25991686 ATTTTAAATATTTTAAAGATTCAAAGTATGTAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
66 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
*
25991751 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAATGCCACGTATGATGAATCTTAAAAAATTC
131 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
25991816 AAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATTACCATGTAGCTTG
196 AAAAAGACTT-AAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATTACCATGTAGCTTG
*
25991881 CTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAAACTTATTTTAAATATTTTAAATA
260 CTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAAACTTATTTTAAATATTTTAAAGA
*
25991946 TTCAGAGTATATAGGCTGGAAACCTGACGAGTTGCCTTATATCGAACTATAAGATATAATGGATC
325 TTCAAAGTATATAGGCTGGAAACCTGACGAGTTGCCTTATATCGAACTATAAGATATAATGGATC
25992011 CTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTG-AAAAAGT
390 CTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGT
25992075 TCTATCGAGCTCATTTACTATTGAATA
455 TCTATCGAGCTCATTTACTATTGAATA
25992102 TTTAT
1 TTTAT
25992107 ATAACCTTAA
Statistics
Matches: 473, Mismatches: 12, Indels: 2
0.97 0.02 0.00
Matches are distributed among these distances:
481 240 0.51
482 233 0.49
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.33
Consensus pattern (481 bp):
TTTATTACCATGCAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
AAAAAGACTTAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATTACCATGTAGCTTGC
TTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAAACTTATTTTAAATATTTTAAAGAT
TCAAAGTATATAGGCTGGAAACCTGACGAGTTGCCTTATATCGAACTATAAGATATAATGGATCC
TCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTT
CTATCGAGCTCATTTACTATTGAATA
Found at i:25992568 original size:9 final size:9
Alignment explanation
Indices: 25992545--25992672 Score: 121
Period size: 9 Copynumber: 13.6 Consensus size: 9
25992535 ATTGATCATT
*
25992545 ACTTAAATA
1 ACTTACATA
*
25992554 AATTACATA
1 ACTTACATA
25992563 ACTTACATA
1 ACTTACATA
* *
25992572 ACTCATATA
1 ACTTACATA
25992581 ACTTACATA
1 ACTTACATA
*
25992590 ATTTACATAACA
1 ACTTACAT---A
25992602 ACTTACATA
1 ACTTACATA
*
25992611 ACTCACATA
1 ACTTACATA
25992620 ACTTACATA
1 ACTTACATA
*
25992629 ATTTACATA
1 ACTTACATA
*
25992638 ACTCACATA
1 ACTTACATA
*
25992647 ACGTACATAACA
1 ACTTACAT---A
25992659 ACTTACATA
1 ACTTACATA
25992668 ACTTA
1 ACTTA
25992673 ACTAATACAT
Statistics
Matches: 96, Mismatches: 17, Indels: 12
0.77 0.14 0.10
Matches are distributed among these distances:
9 80 0.83
12 16 0.17
ACGTcount: A:0.47, C:0.21, G:0.01, T:0.31
Consensus pattern (9 bp):
ACTTACATA
Found at i:25992614 original size:39 final size:39
Alignment explanation
Indices: 25992562--25992639 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
25992552 TAAATTACAT
*
25992562 AACTTACATAACTCATATAACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
25992601 AACTTACATAACTCACATAACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
25992640 TCACATAACG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (39 bp):
AACTTACATAACTCACATAACTTACATAATTTACATAAC
Found at i:25992639 original size:57 final size:57
Alignment explanation
Indices: 25992558--25992670 Score: 172
Period size: 57 Copynumber: 2.0 Consensus size: 57
25992548 TAAATAAATT
* * **
25992558 ACATAACTTACATAACTCATATAACTTACATAATTTACATAACAACTTACATAACTC
1 ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACTC
* *
25992615 ACATAACTTACATAATTTACATAACTCACATAACGTACATAACAACTTACATAACT
1 ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACT
25992671 TAACTAATAC
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
57 50 1.00
ACGTcount: A:0.46, C:0.23, G:0.01, T:0.30
Consensus pattern (57 bp):
ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACTC
Found at i:25998246 original size:21 final size:21
Alignment explanation
Indices: 25998220--25998267 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
25998210 TCAACTTATA
* *
25998220 GCGGAGGCAGCAGCGCGGGAG
1 GCGGAGGCAGCAACGAGGGAG
25998241 GCGGAGGCAGCAACGAGGGAG
1 GCGGAGGCAGCAACGAGGGAG
25998262 GCGGAG
1 GCGGAG
25998268 CAGAACAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.56, T:0.00
Consensus pattern (21 bp):
GCGGAGGCAGCAACGAGGGAG
Found at i:25999676 original size:14 final size:14
Alignment explanation
Indices: 25999657--25999683 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
25999647 ATCCTAATTA
25999657 GATATCTTGGTTCT
1 GATATCTTGGTTCT
25999671 GATATCTTGGTTC
1 GATATCTTGGTTC
25999684 CATTTTAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.22, T:0.48
Consensus pattern (14 bp):
GATATCTTGGTTCT
Found at i:26004436 original size:16 final size:18
Alignment explanation
Indices: 26004389--26004436 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
26004379 AATTTAAAAT
26004389 TTTTATATATTTTTTAGA
1 TTTTATATATTTTTTAGA
* *
26004407 TTTTATTTACTTTTTA-A
1 TTTTATATATTTTTTAGA
26004424 -TTTATATATTTTT
1 TTTTATATATTTTT
26004437 ATAAAATTCT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
16 11 0.42
17 1 0.04
18 14 0.54
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.71
Consensus pattern (18 bp):
TTTTATATATTTTTTAGA
Found at i:26008004 original size:22 final size:23
Alignment explanation
Indices: 26007979--26008027 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
26007969 ATCCTCTGAG
*
26007979 GAAGGGATAATATGTA-CTT-TGA
1 GAAGGGAAAAT-TGTACCTTATGA
26008001 GAAGGGAAAATTGTACCTTATGA
1 GAAGGGAAAATTGTACCTTATGA
26008024 GAAG
1 GAAG
26008028 ATGATGATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 4 0.17
22 13 0.54
23 7 0.29
ACGTcount: A:0.39, C:0.06, G:0.29, T:0.27
Consensus pattern (23 bp):
GAAGGGAAAATTGTACCTTATGA
Found at i:26016466 original size:29 final size:28
Alignment explanation
Indices: 26016430--26016507 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
26016420 TCATGAGATT
26016430 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
26016460 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
26016487 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
26016508 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:26016869 original size:173 final size:174
Alignment explanation
Indices: 26016460--26016960 Score: 932
Period size: 173 Copynumber: 2.9 Consensus size: 174
26016450 AAATTGTACA
*
26016460 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
26016525 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
26016590 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
26016634 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTGAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
26016699 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
*
26016764 -TTTGGACAGTGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
26016807 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* * *
26016872 TGTGCGAACTCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
26016937 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
26016961 ACCTTGAGTT
Statistics
Matches: 316, Mismatches: 10, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
173 167 0.53
174 149 0.47
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:26023224 original size:48 final size:49
Alignment explanation
Indices: 26023171--26023266 Score: 131
Period size: 49 Copynumber: 2.0 Consensus size: 49
26023161 ATTAAACTCT
* *
26023171 CTCATAACTTATCTCTCA-AGGATGAAATTCATTCAAATAAATTTGACA
1 CTCATAACTAATCTCTCAGAGGATGAAATTCAATCAAATAAATTTGACA
* * * *
26023219 CTCATAACTAATCTCTTAGGGGTTGTAATTCAATCAAATAAATTTGAC
1 CTCATAACTAATCTCTCAGAGGATGAAATTCAATCAAATAAATTTGAC
26023267 TCTCTCAGAA
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
48 16 0.39
49 25 0.61
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.34
Consensus pattern (49 bp):
CTCATAACTAATCTCTCAGAGGATGAAATTCAATCAAATAAATTTGACA
Found at i:26033592 original size:9 final size:9
Alignment explanation
Indices: 26033578--26033602 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
26033568 TTACAATTTC
26033578 CCATAATAT
1 CCATAATAT
26033587 CCATAATAT
1 CCATAATAT
26033596 CCATAAT
1 CCATAAT
26033603 CATAGAAATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.44, C:0.24, G:0.00, T:0.32
Consensus pattern (9 bp):
CCATAATAT
Found at i:26036168 original size:16 final size:16
Alignment explanation
Indices: 26036147--26036217 Score: 88
Period size: 16 Copynumber: 4.4 Consensus size: 16
26036137 GTTTGGTTCA
*
26036147 CTGTAATGGAATAGGG
1 CTGTAATGGAATAGAG
*
26036163 CTGTAATTGAATAGAG
1 CTGTAATGGAATAGAG
* *
26036179 CTGTAATGAAATAGGG
1 CTGTAATGGAATAGAG
* *
26036195 TTGTAATGGACTAGAG
1 CTGTAATGGAATAGAG
26036211 CTGTAAT
1 CTGTAAT
26036218 AAGTAATTCA
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 45 1.00
ACGTcount: A:0.34, C:0.07, G:0.30, T:0.30
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:26036192 original size:32 final size:32
Alignment explanation
Indices: 26036147--26036217 Score: 106
Period size: 32 Copynumber: 2.2 Consensus size: 32
26036137 GTTTGGTTCA
* *
26036147 CTGTAATGGAATAGGGCTGTAATTGAATAGAG
1 CTGTAATGAAATAGGGCTGTAATGGAATAGAG
* *
26036179 CTGTAATGAAATAGGGTTGTAATGGACTAGAG
1 CTGTAATGAAATAGGGCTGTAATGGAATAGAG
26036211 CTGTAAT
1 CTGTAAT
26036218 AAGTAATTCA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.34, C:0.07, G:0.30, T:0.30
Consensus pattern (32 bp):
CTGTAATGAAATAGGGCTGTAATGGAATAGAG
Found at i:26036261 original size:46 final size:44
Alignment explanation
Indices: 26036199--26036292 Score: 116
Period size: 44 Copynumber: 2.1 Consensus size: 44
26036189 ATAGGGTTGT
* * *
26036199 AATGGACTAGAGCTGTAATAAGTAATTCAACTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAAT-AGT-ATTCAACTATTTGGTTGAATGG
***
26036245 AATGGAATAGAACTGTAATAGTATTCTTGTATTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAGTATTCAACTATTTGGTTGAATGG
26036289 AATG
1 AATG
26036293 ATGTTGTAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
44 22 0.52
45 3 0.07
46 17 0.40
ACGTcount: A:0.33, C:0.06, G:0.26, T:0.35
Consensus pattern (44 bp):
AATGGAATAGAACTGTAATAGTATTCAACTATTTGGTTGAATGG
Found at i:26039753 original size:40 final size:40
Alignment explanation
Indices: 26039716--26039901 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
26039706 GCTACTCGTT
* *
26039716 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
26039756 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
26039796 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
26039836 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
26039877 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
26039902 CATCATTCAA
Statistics
Matches: 133, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 3 0.02
40 117 0.88
41 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:26047798 original size:40 final size:40
Alignment explanation
Indices: 26047761--26047946 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
26047751 GCTACTCGTT
* *
26047761 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
26047801 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
26047841 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
26047881 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
26047922 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
26047947 CATCATTCAA
Statistics
Matches: 133, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 3 0.02
40 117 0.88
41 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:26060278 original size:7 final size:7
Alignment explanation
Indices: 26060266--26060291 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
26060256 GTTCAAAAAT
26060266 TTTATTA
1 TTTATTA
26060273 TTTATTA
1 TTTATTA
26060280 TTTATTA
1 TTTATTA
26060287 TTTAT
1 TTTAT
26060292 AAGTTAAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (7 bp):
TTTATTA
Found at i:26061256 original size:43 final size:43
Alignment explanation
Indices: 26061195--26061277 Score: 157
Period size: 43 Copynumber: 1.9 Consensus size: 43
26061185 AAATTGAGGG
26061195 GTATAAATTGTGAAGTGAATTAGAATTGAAATATGTGCTAGAC
1 GTATAAATTGTGAAGTGAATTAGAATTGAAATATGTGCTAGAC
*
26061238 GTATAAATTTTGAAGTGAATTAGAATTGAAATATGTGCTA
1 GTATAAATTGTGAAGTGAATTAGAATTGAAATATGTGCTA
26061278 ATGAATAACT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.40, C:0.04, G:0.22, T:0.35
Consensus pattern (43 bp):
GTATAAATTGTGAAGTGAATTAGAATTGAAATATGTGCTAGAC
Found at i:26061779 original size:33 final size:32
Alignment explanation
Indices: 26061720--26061807 Score: 131
Period size: 33 Copynumber: 2.7 Consensus size: 32
26061710 GTGATTAAAT
26061720 ATAAGACCATAACTGGGTATGGAAATCTGATC
1 ATAAGACCATAACTGGGTATGGAAATCTGATC
* *
26061752 ATAAGACCATAGCTGGGCTATGGAAATCTGATG
1 ATAAGACCATAACTGGG-TATGGAAATCTGATC
*
26061785 ATAAGACCATAACTAGGTTATGG
1 ATAAGACCATAACT-GGGTATGG
26061808 CACTATGAGT
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
32 16 0.32
33 32 0.64
34 2 0.04
ACGTcount: A:0.36, C:0.15, G:0.24, T:0.25
Consensus pattern (32 bp):
ATAAGACCATAACTGGGTATGGAAATCTGATC
Found at i:26064546 original size:40 final size:40
Alignment explanation
Indices: 26064463--26064725 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
26064453 TTGAATGCTG
* * * * * *
26064463 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
26064503 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
26064543 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
26064583 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
26064623 TCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
26064663 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
26064702 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
26064726 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:26064745 original size:79 final size:80
Alignment explanation
Indices: 26064502--26064760 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
26064492 AAGTGAATAT
* * * * * * *
26064502 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCAAAGGCAT
** * *
26064566 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
26064582 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCAAAGGCATT
** ** *
26064647 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
26064662 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCAAAGGCATT
* *
26064726 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
26064741 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
26064761 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCAAAGGCATT
CGAACGAGGAGCTAA
Found at i:26072505 original size:40 final size:40
Alignment explanation
Indices: 26072429--26072684 Score: 311
Period size: 40 Copynumber: 6.4 Consensus size: 40
26072419 CTGTCTGGGC
* * * * * *
26072429 TAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGAT
1 TAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGT
* * * *
26072469 TAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGT
1 TAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
26072509 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
1 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
26072549 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
1 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
* *
26072589 TAAGTCCCAAAGGCATTCGTGCGAGTTGTTAAATCCGGGT
1 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
* * * * *
26072629 TATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGC
1 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
*
26072668 TATGTCCCGAAGGCATT
1 TAAGTCCCGAAGGCATT
26072685 TGAACGAGGA
Statistics
Matches: 194, Mismatches: 19, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 151 0.78
41 8 0.04
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
Found at i:26072704 original size:79 final size:80
Alignment explanation
Indices: 26072461--26072719 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
26072451 AAGTGAATAT
* * * * * * *
26072461 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCAAAGGCAT
** * *
26072525 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
26072541 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCAAAGGCATT
** ** *
26072606 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
26072621 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCAAAGGCATT
* *
26072685 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
26072700 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
26072720 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCAAAGGCATT
CGAACGAGGAGCTAA
Found at i:26075951 original size:42 final size:44
Alignment explanation
Indices: 26075905--26075999 Score: 124
Period size: 44 Copynumber: 2.2 Consensus size: 44
26075895 TCCTAGACAG
**
26075905 GGTCTTACACG-AAATCA-AA-TACGATGCCAACATCCCAAATGT
1 GGTCTTACACGTAAATCATAAGT-CGATGCCAACATCCCAAACAT
* *
26075947 GGTCTTACACGTAAATCATAAGTCGATGCCAACGTCCCAGACAT
1 GGTCTTACACGTAAATCATAAGTCGATGCCAACATCCCAAACAT
26075991 GGTCTTACA
1 GGTCTTACA
26076000 TGATAACACA
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
42 11 0.24
43 6 0.13
44 28 0.61
45 1 0.02
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (44 bp):
GGTCTTACACGTAAATCATAAGTCGATGCCAACATCCCAAACAT
Found at i:26085051 original size:16 final size:15
Alignment explanation
Indices: 26085006--26085063 Score: 55
Period size: 16 Copynumber: 3.8 Consensus size: 15
26084996 CATAAATATT
26085006 AAATTAAAATAATATG
1 AAATTAAAATAATA-G
** *
26085022 ATTTTAAAAAAATAG
1 AAATTAAAATAATAG
26085037 AAATTAATAATAATA-
1 AAATTAA-AATAATAG
*
26085052 AACTTAAAATAA
1 AAATTAAAATAA
26085064 ATTTTATAAA
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
14 5 0.15
15 12 0.35
16 17 0.50
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.31
Consensus pattern (15 bp):
AAATTAAAATAATAG
Found at i:26092645 original size:56 final size:57
Alignment explanation
Indices: 26092580--26092694 Score: 144
Period size: 56 Copynumber: 2.0 Consensus size: 57
26092570 TTTATTATTT
* * * *
26092580 ATAAGATTTA-CTAAATTTAAAAATAAGAATTTTAATTTTACTAAAATATTTTATTAA
1 ATAAGATTTATC-AAACTTAAAAATAAGAATTTTAATTTCACTAAAAAAATTTATTAA
* * *
26092637 ATAA-ATTTATCATACTTATAAATAAGAATTTTGATTTCACTAAAAAAATTTATTAA
1 ATAAGATTTATCAAACTTAAAAATAAGAATTTTAATTTCACTAAAAAAATTTATTAA
26092693 AT
1 AT
26092695 GAAGTTATAT
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
56 45 0.90
57 5 0.10
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.43
Consensus pattern (57 bp):
ATAAGATTTATCAAACTTAAAAATAAGAATTTTAATTTCACTAAAAAAATTTATTAA
Found at i:26092714 original size:56 final size:56
Alignment explanation
Indices: 26092600--26092719 Score: 143
Period size: 56 Copynumber: 2.1 Consensus size: 56
26092590 CTAAATTTAA
* * * * * *
26092600 AAATAAGAATTTTAATTTTACTAAAATATTTTATTAAATAAATTTATCATACTTAT
1 AAATAAGAATTTTAATTTCACTAAAAAAATTTATTAAATAAAGTTATCATAATAAT
* *
26092656 AAATAAGAATTTTGATTTCACTAAAAAAATTTATTAAATGAAGTTAT-ATAATAAAT
1 AAATAAGAATTTTAATTTCACTAAAAAAATTTATTAAATAAAGTTATCATAAT-AAT
*
26092712 AAAAAAGA
1 AAATAAGA
26092720 TAAACATTAT
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
55 4 0.07
56 50 0.93
ACGTcount: A:0.52, C:0.04, G:0.05, T:0.39
Consensus pattern (56 bp):
AAATAAGAATTTTAATTTCACTAAAAAAATTTATTAAATAAAGTTATCATAATAAT
Found at i:26095648 original size:35 final size:35
Alignment explanation
Indices: 26095536--26095648 Score: 88
Period size: 35 Copynumber: 3.2 Consensus size: 35
26095526 GTGTTTAGAA
26095536 TGGTTAATATGAGGTATTACATACTTTATGAGCTC
1 TGGTTAATATGAGGTATTACATACTTTATGAGCTC
* * ** * * * *
26095571 TGGTTATTGTTTGGAATGACCGTGGACAGTTT-TG-G-TA
1 TGGTTAATATGAGGTATTA-CAT--AC--TTTATGAGCTC
26095608 TGGTTAATATGAGGTATTACATACTTTATGAGCTC
1 TGGTTAATATGAGGTATTACATACTTTATGAGCTC
26095643 TGGTTA
1 TGGTTA
26095649 TTGTTTGGAA
Statistics
Matches: 54, Mismatches: 16, Indels: 16
0.63 0.19 0.19
Matches are distributed among these distances:
32 3 0.06
33 2 0.04
34 3 0.06
35 20 0.37
36 4 0.07
37 14 0.26
38 3 0.06
39 2 0.04
40 3 0.06
ACGTcount: A:0.25, C:0.10, G:0.25, T:0.41
Consensus pattern (35 bp):
TGGTTAATATGAGGTATTACATACTTTATGAGCTC
Found at i:26095652 original size:72 final size:72
Alignment explanation
Indices: 26095535--26095681 Score: 294
Period size: 72 Copynumber: 2.0 Consensus size: 72
26095525 TGTGTTTAGA
26095535 ATGGTTAATATGAGGTATTACATACTTTATGAGCTCTGGTTATTGTTTGGAATGACCGTGGACAG
1 ATGGTTAATATGAGGTATTACATACTTTATGAGCTCTGGTTATTGTTTGGAATGACCGTGGACAG
26095600 TTTTGGT
66 TTTTGGT
26095607 ATGGTTAATATGAGGTATTACATACTTTATGAGCTCTGGTTATTGTTTGGAATGACCGTGGACAG
1 ATGGTTAATATGAGGTATTACATACTTTATGAGCTCTGGTTATTGTTTGGAATGACCGTGGACAG
26095672 TTTTGGT
66 TTTTGGT
26095679 ATG
1 ATG
26095682 ATTTGTTAGT
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 75 1.00
ACGTcount: A:0.24, C:0.10, G:0.27, T:0.40
Consensus pattern (72 bp):
ATGGTTAATATGAGGTATTACATACTTTATGAGCTCTGGTTATTGTTTGGAATGACCGTGGACAG
TTTTGGT
Found at i:26095811 original size:22 final size:21
Alignment explanation
Indices: 26095757--26095813 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 21
26095747 TATCAAGGTC
*
26095757 TTGTCTTGAAACATAAGCCTCT
1 TTGTCTTGAGACATAA-CCTCT
*
26095779 TTGTCTCGAGACAT-ACACTCAT
1 TTGTCTTGAGACATAAC-CTC-T
26095801 TTGTCTTGAGACA
1 TTGTCTTGAGACA
26095814 CGACAACTTC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 1 0.03
21 4 0.13
22 25 0.83
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.35
Consensus pattern (21 bp):
TTGTCTTGAGACATAACCTCT
Found at i:26105454 original size:19 final size:16
Alignment explanation
Indices: 26105415--26105445 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
26105405 AAATTCGAAA
26105415 AAAAAGAAGAAAAAAT
1 AAAAAGAAGAAAAAAT
26105431 AAAAAGAAGAAAAAA
1 AAAAAGAAGAAAAAA
26105446 AGTTAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.03
Consensus pattern (16 bp):
AAAAAGAAGAAAAAAT
Found at i:26108219 original size:28 final size:29
Alignment explanation
Indices: 26108183--26108247 Score: 69
Period size: 29 Copynumber: 2.3 Consensus size: 29
26108173 AAAGTGATTT
* *
26108183 TTGACAAAAACGTCAATT-AGGGATTAAA
1 TTGAGAAAAACGTAAATTGAGGGATTAAA
** *
26108211 TTGAGAAAAGTGTAAATTGAGGGGTTAAA
1 TTGAGAAAAACGTAAATTGAGGGATTAAA
*
26108240 TTGTGAAA
1 TTGAGAAA
26108248 TAAATAAAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 14 0.47
29 16 0.53
ACGTcount: A:0.43, C:0.05, G:0.25, T:0.28
Consensus pattern (29 bp):
TTGAGAAAAACGTAAATTGAGGGATTAAA
Found at i:26108766 original size:43 final size:44
Alignment explanation
Indices: 26108718--26108843 Score: 166
Period size: 43 Copynumber: 2.9 Consensus size: 44
26108708 GGTTATCGAG
* *
26108718 TTGTGATTACATGTAAGACCATGCCTGAGACATTGGCATCA-TA
1 TTGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCATTA
*
26108761 TTGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCATTA
1 TTGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCATTA
* * * * *
26108805 AT-TGATTTCCTGTAAGACCTTGTCTGGGACAATGGCATC
1 TTGTGATTACATGTAAGACCATGTCTGGGACATTGGCATC
26108844 GACATATGAT
Statistics
Matches: 74, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
43 71 0.96
44 3 0.04
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (44 bp):
TTGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCATTA
Found at i:26110974 original size:29 final size:29
Alignment explanation
Indices: 26110926--26111079 Score: 108
Period size: 29 Copynumber: 5.4 Consensus size: 29
26110916 AAAAAATAAA
*
26110926 AAATTACATTTTGACCCCTAAACTTTTCTT
1 AAATTACATTTT-AACCCTAAACTTTTCTT
*
26110956 AAATTACATTTTAACCCTAAACTTTTCCT
1 AAATTACATTTTAACCCTAAACTTTTCTT
*
26110985 --A-T--A-TTTACCCCTAAAC-TTTCTTT
1 AAATTACATTTTAACCCTAAACTTTTC-TT
* * * * *
26111008 AAATTTCACTTCAACCCTAAAAATTTTTTT
1 AAATTACATTTTAACCCT-AAACTTTTCTT
* * *
26111038 AAATTGCATTTTGACCCTAAA-TTTTCTAA
1 AAATTACATTTTAACCCTAAACTTTTCT-T
*
26111067 AAATTACACTTTA
1 AAATTACATTTTA
26111080 GCCCCAGAAG
Statistics
Matches: 97, Mismatches: 17, Indels: 21
0.72 0.13 0.16
Matches are distributed among these distances:
22 4 0.04
23 13 0.13
24 1 0.01
25 1 0.01
26 2 0.02
27 1 0.01
28 6 0.06
29 35 0.36
30 31 0.32
31 3 0.03
ACGTcount: A:0.34, C:0.21, G:0.02, T:0.43
Consensus pattern (29 bp):
AAATTACATTTTAACCCTAAACTTTTCTT
Found at i:26112575 original size:17 final size:17
Alignment explanation
Indices: 26112550--26112717 Score: 69
Period size: 18 Copynumber: 9.7 Consensus size: 17
26112540 ATAACAAAAA
*
26112550 TTCGGGTTTCAAAAATT
1 TTCGTGTTTCAAAAATT
26112567 TTCGTGTTTTCAAAAATT
1 TTCGTG-TTTCAAAAATT
* ****
26112585 TTCAT-TTTTTTTAATT
1 TTCGTGTTTCAAAAATT
* *
26112601 TCTCGGGTTTCAAAGATT
1 T-TCGTGTTTCAAAAATT
*
26112619 CTCAG-GTTTTCAAAAAATT
1 TTC-GTG-TTTC-AAAAATT
26112638 TT-GTGTTTTC-AAAATAT
1 TTCGTG-TTTCAAAAAT-T
* * **
26112655 CTCGGGTTTCAAAAAAAA
1 TTCGTGTTTC-AAAAATT
* **
26112673 ATCAAGTTTC-AAAATT
1 TTCGTGTTTCAAAAATT
26112689 TTCGTGTTTTC-AAAATT
1 TTCGTG-TTTCAAAAATT
26112706 TTCGTGTTTCAA
1 TTCGTGTTTCAA
26112718 TCGGATCATG
Statistics
Matches: 110, Mismatches: 28, Indels: 26
0.67 0.17 0.16
Matches are distributed among these distances:
16 24 0.22
17 34 0.31
18 41 0.37
19 11 0.10
ACGTcount: A:0.30, C:0.12, G:0.12, T:0.45
Consensus pattern (17 bp):
TTCGTGTTTCAAAAATT
Found at i:26112579 original size:18 final size:18
Alignment explanation
Indices: 26112556--26112714 Score: 77
Period size: 17 Copynumber: 9.1 Consensus size: 18
26112546 AAAATTCGGG
26112556 TTTCAAAAATTTTCGTGT
1 TTTCAAAAATTTTCGTGT
*
26112574 TTTCAAAAATTTTCAT-T
1 TTTCAAAAATTTTCGTGT
*** *
26112591 TTT-TTTAATTTCTCG-GG
1 TTTCAAAAATTT-TCGTGT
* *
26112608 TTTCAAAGATTCTCAG-GT
1 TTTCAAAAATTTTC-GTGT
26112626 TTTCAAAAAATTTT-GTGT
1 TTTC-AAAAATTTTCGTGT
* *
26112644 TTTC-AAAATATCTCG-GG
1 TTTCAAAAAT-TTTCGTGT
*** **
26112661 TTTCAAAAAAAAATCAAG-
1 TTTC-AAAAATTTTCGTGT
26112679 TTTC-AAAATTTTCGTGT
1 TTTCAAAAATTTTCGTGT
26112696 TTTC-AAAATTTTCGTGT
1 TTTCAAAAATTTTCGTGT
26112713 TT
1 TT
26112715 CAATCGGATC
Statistics
Matches: 104, Mismatches: 25, Indels: 25
0.68 0.16 0.16
Matches are distributed among these distances:
16 17 0.16
17 38 0.37
18 37 0.36
19 12 0.12
ACGTcount: A:0.30, C:0.12, G:0.11, T:0.47
Consensus pattern (18 bp):
TTTCAAAAATTTTCGTGT
Found at i:26116865 original size:93 final size:93
Alignment explanation
Indices: 26116706--26116877 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
26116696 GGATGGTTGA
* * * *
26116706 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCCCGAACTCGTTGAGT
26116771 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
26116799 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCCCGAACTCGTTGAGT
26116864 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
26116878 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:26116882 original size:46 final size:46
Alignment explanation
Indices: 26116710--26116882 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
26116700 GGTTGAGCAT
* * * *
26116710 CCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGC
* * *
26116756 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-A-ATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAAC---GC
*
26116801 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGC
* *
26116849 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTAT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT
26116883 GGGCGGGTTA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
45 3 0.03
46 61 0.57
47 27 0.25
48 4 0.04
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGC
Found at i:26127308 original size:91 final size:86
Alignment explanation
Indices: 26127159--26127649 Score: 373
Period size: 78 Copynumber: 5.9 Consensus size: 86
26127149 TCTGTTTTTC
* * * *
26127159 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCGAGCCACATGCCGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCG-GTCACACGCTGAGGTATTTTCAATT
* *
26127224 TTTGTTTTTTAATTTCTACTTTTCAA
65 TTTGTTTTTCAA-TT-TA--TGTCAA
* *
26127250 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCATCAGGTCACACGCTGAGATATTTTC-ATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATC-GGTCACACGCTGAGGTATTTTCAATT
* *
26127314 TTCT-ATTTTCAATTTATGTGAA
65 TT-TGTTTTTCAATTTATGTCAA
* * * *
26127336 AAAAGATTAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCACACACTGAGGTATTTTCAAT
1 AAAA-ATCAACTCATATTGCGAGAGGTGAGTTGAG-CATCGGTCACACGCTGAGGTATTTTCAAT
*
26127401 TTCTG--------TTT-T-TCAA
64 TTTTGTTTTTCAATTTATGTCAA
* * *
26127414 AAAAATCAACTCATGTTGCGAGAGGTGAGTTGAGCCTCGGGTCACATG-TCGAGGTATTTTTCAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATC-GGTCACACGCT-GAGGTA-TTTTCAA
*
26127478 TTTATG----TC----T-T-TCAA
63 TTTTTGTTTTTCAATTTATGTCAA
* *
26127492 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGGC-TCGGGTCACACGCAGAGGTATTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGA-GCATC-GGTCACACGCTGAGGTATTTTCAAT
26127556 TTCTT-TTTTTC-A---A----AA
64 TT-TTGTTTTTCAATTTATGTCAA
* * *
26127571 AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGTCACATGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATC-GGTCACACGCTGAGGTATTTTCAATT
26127636 TTCTGCTTTTTCAA
65 TT-TG-TTTTTCAA
26127650 AGATCAATTC
Statistics
Matches: 340, Mismatches: 35, Indels: 59
0.78 0.08 0.14
Matches are distributed among these distances:
76 3 0.01
77 51 0.15
78 77 0.23
79 64 0.19
80 3 0.01
81 8 0.02
82 1 0.00
86 8 0.02
87 49 0.14
88 8 0.02
89 2 0.01
90 11 0.03
91 54 0.16
92 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (86 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCGGTCACACGCTGAGGTATTTTCAATTT
TTGTTTTTCAATTTATGTCAA
Found at i:26127441 original size:77 final size:77
Alignment explanation
Indices: 26127229--26127725 Score: 489
Period size: 77 Copynumber: 6.3 Consensus size: 77
26127219 CAATTTTTGT
* ** * * *
26127229 TTTTTAATTTCTACTTTTCAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCATCAGGTCA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCA
*
26127294 CACGCTGAGATA
66 CACGCTGAGGTA
** * *
26127306 TTTTCATTTTCTATTTTCAATTTATGTGAAAAAAGATTAACTCATATTGCGAGAGGTGAGTTGAG
1 TTTTCA------A-TTTCTGTTT-T-TCAAAAAA-ATCAACTCATATTGCGAGAGGTGAGTTGAG
* *
26127371 CCTTGGGTCACACACTGAGGTA
56 CCTCGGGTCACACGCTGAGGTA
*
26127393 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATGTTGCGAGAGGTGAGTTGAGCCTCGGGTCA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCA
*
26127458 CATG-TCGAGGTA
66 CACGCT-GAGGTA
* * * *
26127470 TTTTTCAATTTATGTCTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGGCTCGGGTC
1 -TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTC
*
26127535 ACACGCAGAGGTA
65 ACACGCTGAGGTA
* * *
26127548 TTTTCAATTTCTTTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGT
1 TTTTCAATTTCTGTTTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT
*
26127613 CACATGCTGAGGTA
64 CACACGCTGAGGTA
* * * * * * *
26127627 TTTTCAATTTTCTGCTTTTTC--AAAGATCAATTCATAATCCAAGAGGTGAGTTGAACTTCGGGT
1 TTTTCAA-TTTCTG-TTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT
* * *
26127690 CGCATC-CCGAGCTA
64 CACA-CGCTGAGGTA
*
26127704 TTTTCAATTTTTTGTTTTTCAA
1 TTTTCAA-TTTCTGTTTTTCAA
26127726 TAAAGAATAA
Statistics
Matches: 350, Mismatches: 50, Indels: 39
0.80 0.11 0.09
Matches are distributed among these distances:
76 7 0.02
77 121 0.35
78 76 0.22
79 60 0.17
80 12 0.03
81 7 0.02
83 1 0.00
84 7 0.02
85 1 0.00
86 7 0.02
87 51 0.15
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.35
Consensus pattern (77 bp):
TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCA
CACGCTGAGGTA
Found at i:26127551 original size:155 final size:156
Alignment explanation
Indices: 26127334--26127725 Score: 474
Period size: 157 Copynumber: 2.5 Consensus size: 156
26127324 AATTTATGTG
* * * *
26127334 AAAAAAGATTAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCACACACTGAGGTATTTTCA
1 AAAAAAGATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACACACAGAGGTATTTTCA
* * *
26127399 ATTTCTGTTTTTC-AAAAAAATCAACTCATGTTGCGAGAGGTGAGTTGAGCCTCGGGTCACATG-
66 ATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGTCACATGC
26127462 TCGAGGTATTTTTCAATTTATGTCTTTC
131 T-GAGGTA-TTTTCAATTTATGTCTTTC
* *
26127490 AAAAAA-ATCAACTCATATTACGAGAGGTGAGTTGAGGCTCGGGTCACACGCAGAGGTATTTTCA
1 AAAAAAGATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACACACAGAGGTATTTTCA
*
26127554 ATTTCTTTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGTCACATG
66 ATTTCTGTTTTTC-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGTCACATG
* *
26127619 CTGAGGTATTTTCAATTTTCTGCTTTTTC
130 CTGAGGTATTTTCAA-TTTATG-TCTTTC
* * * * * * * * *
26127648 ---AAAGATCAATTCATAATCCAAGAGGTGAGTTGAACTTCGGGTCGCATC-CCGAGCTATTTTC
1 AAAAAAGATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACA-CACAGAGGTATTTTC
*
26127709 AATTTTTTGTTTTTCAA
65 AA-TTTCTGTTTTTCAA
26127726 TAAAGAATAA
Statistics
Matches: 204, Mismatches: 24, Indels: 16
0.84 0.10 0.07
Matches are distributed among these distances:
155 67 0.33
156 62 0.30
157 69 0.34
158 6 0.03
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (156 bp):
AAAAAAGATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACACACAGAGGTATTTTCA
ATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGTCACATGC
TGAGGTATTTTCAATTTATGTCTTTC
Found at i:26127674 original size:234 final size:235
Alignment explanation
Indices: 26127244--26127713 Score: 581
Period size: 234 Copynumber: 2.0 Consensus size: 235
26127234 AATTTCTACT
* *
26127244 TTTCAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCATCAGGTCACACGCTGAGATATTT
1 TTTCAAAAAAATCAACTCATATTACAAGAGGTGAGTTGAGCATCAGGTCACACGCAGAGATATTT
* * * * *
26127309 TCATTTTCTATTTTCAATTTATGTGAAAAAAGATTAACTCATATTGCGAGAGGTGAGTTGAGCCT
66 TCAATTTCTATTTT--ATTCA---GAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCT
** ** * *
26127374 TGGGTCACACACTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATGTTGCGAGAGG
126 CAGGTCACACACTGAGGTATTTTCAATTTCTGTTTTTC-AAAAAATCAACTCATAATCCAAGAGG
* ** *
26127439 TGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTTCAATTTATGTC
190 TGAGTTGAACCTCGGGTCACATCCCGAGCTA-TTTTCAATTTATGTC
* * *
26127486 TTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGGC-TCGGGTCACACGCAGAGGTATT
1 TTTCAAAAAAATCAACTCATATTACAAGAGGTGAGTTGA-GCATCAGGTCACACGCAGAGATATT
26127550 TTCAATTTCT-TTTT-TTCA-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGG
65 TTCAATTTCTATTTTATTCAGAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGG
** * *
26127612 TCACATGCTGAGGTATTTTCAATTTTCTGCTTTTTC-AAAGATCAATTCATAATCCAAGAGGTGA
130 TCACACACTGAGGTATTTTCAA-TTTCTG-TTTTTCAAAAAATCAACTCATAATCCAAGAGGTGA
* *
26127676 GTTGAACTTCGGGTCGCATCCCGAGCTATTTTCAATTT
193 GTTGAACCTCGGGTCACATCCCGAGCTATTTTCAATTT
26127714 TTTGTTTTTC
Statistics
Matches: 199, Mismatches: 26, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
233 10 0.05
234 103 0.52
235 6 0.03
236 6 0.03
238 3 0.02
241 4 0.02
242 65 0.33
243 2 0.01
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.34
Consensus pattern (235 bp):
TTTCAAAAAAATCAACTCATATTACAAGAGGTGAGTTGAGCATCAGGTCACACGCAGAGATATTT
TCAATTTCTATTTTATTCAGAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGT
CACACACTGAGGTATTTTCAATTTCTGTTTTTCAAAAAATCAACTCATAATCCAAGAGGTGAGTT
GAACCTCGGGTCACATCCCGAGCTATTTTCAATTTATGTC
Found at i:26127949 original size:30 final size:29
Alignment explanation
Indices: 26127913--26127999 Score: 122
Period size: 30 Copynumber: 3.0 Consensus size: 29
26127903 GAAAAATAAA
26127913 AAATTATATTTTGACCCATAAACTTTTCTT
1 AAATTATATTTTGACCC-TAAACTTTTCTT
*
26127943 AAATTATATTTTGACCCCTAAACTTTTATT
1 AAATTATATTTTGA-CCCTAAACTTTTCTT
**
26127973 AAATTGCATTTTGACCCTAAA-TTTTCT
1 AAATTATATTTTGACCCTAAACTTTTCT
26128000 AAAAATTACA
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
28 5 0.10
29 7 0.13
30 37 0.71
31 3 0.06
ACGTcount: A:0.32, C:0.17, G:0.05, T:0.46
Consensus pattern (29 bp):
AAATTATATTTTGACCCTAAACTTTTCTT
Found at i:26128005 original size:29 final size:29
Alignment explanation
Indices: 26127911--26128007 Score: 99
Period size: 30 Copynumber: 3.3 Consensus size: 29
26127901 TTGAAAAATA
26127911 AAAAATTATATTTTGACCCATAAACTTTTCT
1 AAAAATTATATTTTGACCC-TAAA-TTTTCT
* *
26127942 -TAAATTATATTTTGACCCCTAAACTTT-T
1 AAAAATTATATTTTGA-CCCTAAATTTTCT
* **
26127970 ATTAAATTGCATTTTGACCCTAAATTTTCT
1 A-AAAATTATATTTTGACCCTAAATTTTCT
26128000 AAAAATTA
1 AAAAATTA
26128008 CACTTTAGCC
Statistics
Matches: 55, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
28 1 0.02
29 18 0.33
30 33 0.60
31 3 0.05
ACGTcount: A:0.37, C:0.15, G:0.04, T:0.43
Consensus pattern (29 bp):
AAAAATTATATTTTGACCCTAAATTTTCT
Found at i:26129486 original size:17 final size:17
Alignment explanation
Indices: 26129466--26129567 Score: 55
Period size: 18 Copynumber: 5.9 Consensus size: 17
26129456 TATAAAAAAA
26129466 TTCGGGTTTCAAAAATT
1 TTCGGGTTTCAAAAATT
* ****
26129483 TTC-GTTTTTTTTAATT
1 TTCGGGTTTCAAAAATT
*
26129499 TCTCGGGTTTCAAAGATT
1 T-TCGGGTTTCAAAAATT
* *
26129517 CTCAGGTTTTCAAAAATT
1 TTC-GGGTTTCAAAAATT
* *
26129535 TTTGTGTTTTC-AAAATCT
1 TTCG-GGTTTCAAAAAT-T
*
26129553 CTCGGGTTTCAAAAA
1 TTCGGGTTTCAAAAA
26129568 AAATTCGAGT
Statistics
Matches: 60, Mismatches: 19, Indels: 11
0.67 0.21 0.12
Matches are distributed among these distances:
16 9 0.15
17 18 0.30
18 33 0.55
ACGTcount: A:0.25, C:0.14, G:0.15, T:0.46
Consensus pattern (17 bp):
TTCGGGTTTCAAAAATT
Found at i:26129561 original size:18 final size:16
Alignment explanation
Indices: 26129498--26129566 Score: 57
Period size: 17 Copynumber: 4.0 Consensus size: 16
26129488 TTTTTTTAAT
26129498 TTCTCGGGTTTCAAAGA
1 TTCTCGGGTTTCAAA-A
*
26129515 TTCTCAGGTTTTCAAAAA
1 TTCTC-GGGTTTC-AAAA
* * *
26129533 TTTTTGTGTTTTCAAAA
1 TTCTCG-GGTTTCAAAA
26129550 TCTCTCGGGTTTCAAAA
1 T-TCTCGGGTTTCAAAA
26129567 AAAATTCGAG
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
17 20 0.48
18 19 0.45
19 3 0.07
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.42
Consensus pattern (16 bp):
TTCTCGGGTTTCAAAA
Found at i:26129564 original size:53 final size:49
Alignment explanation
Indices: 26129460--26129615 Score: 145
Period size: 52 Copynumber: 3.0 Consensus size: 49
26129450 TTTCTTTATA
* * ** *
26129460 AAAAAATTCGGGTTTCAAAAATTTTCGTTTTTTTTAATTTCTCGGGTTTC
1 AAAAAATTCGAGTTTCAAAAATTTTTG-TTTTTCAAAATTCTCGGGTTTC
* *
26129510 -AAAGATTCTCAGGTTTTCAAAAATTTTTGTGTTTTCAAAATCTCTCGGGTTTC
1 AAAAAATTC-GA-G-TTTCAAAAATTTTTGT-TTTTCAAAAT-TCTCGGGTTTC
*
26129563 AAAAAAAATTCGAGTTTC-AAAATTTTTGTTTTTTCAAAATTCTCGTGTTTC
1 --AAAAAATTCGAGTTTCAAAAATTTTTG-TTTTTCAAAATTCTCGGGTTTC
26129614 AA
1 AA
26129616 TCAGATCATG
Statistics
Matches: 87, Mismatches: 10, Indels: 19
0.75 0.09 0.16
Matches are distributed among these distances:
49 9 0.10
51 12 0.14
52 41 0.47
53 16 0.18
54 1 0.01
55 1 0.01
56 7 0.08
ACGTcount: A:0.29, C:0.13, G:0.13, T:0.45
Consensus pattern (49 bp):
AAAAAATTCGAGTTTCAAAAATTTTTGTTTTTCAAAATTCTCGGGTTTC
Found at i:26129567 original size:18 final size:17
Alignment explanation
Indices: 26129498--26129567 Score: 61
Period size: 18 Copynumber: 4.0 Consensus size: 17
26129488 TTTTTTTAAT
*
26129498 TTCTCGGGTTTCAAAGA
1 TTCTCGGGTTTCAAAAA
*
26129515 TTCTCAGGTTTTCAAAAA
1 TTCTC-GGGTTTCAAAAA
* * *
26129533 TTTTTGTGTTTTC-AAAA
1 TTCTCG-GGTTTCAAAAA
26129550 TCTCTCGGGTTTCAAAAA
1 T-TCTCGGGTTTCAAAAA
26129568 AAATTCGAGT
Statistics
Matches: 42, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
17 16 0.38
18 26 0.62
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (17 bp):
TTCTCGGGTTTCAAAAA
Found at i:26130467 original size:25 final size:25
Alignment explanation
Indices: 26130429--26130488 Score: 70
Period size: 24 Copynumber: 2.4 Consensus size: 25
26130419 ATAAAGTGGG
*
26130429 TTATATATTATTTTTA-TAATATTATA
1 TTAT-TATGATTTTTATTAAT-TTATA
26130455 -TATTATGATTTTTATTAATTTATA
1 TTATTATGATTTTTATTAATTTATA
*
26130479 TTTTTATGAT
1 TTATTATGAT
26130489 AATATTAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
24 15 0.50
25 15 0.50
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.63
Consensus pattern (25 bp):
TTATTATGATTTTTATTAATTTATA
Found at i:26130470 original size:19 final size:18
Alignment explanation
Indices: 26130429--26130495 Score: 57
Period size: 21 Copynumber: 3.6 Consensus size: 18
26130419 ATAAAGTGGG
*
26130429 TTATATATTATTTTTATAATA
1 TTATATATTATATTT-T--TA
26130450 TTATATATTATGATTTTTA
1 TTATATATTAT-ATTTTTA
26130469 TTA-AT-TTATATTTTTA
1 TTATATATTATATTTTTA
*
26130485 TGATAATATTA
1 TTAT-ATATTA
26130496 AAAATGTTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
16 9 0.22
17 4 0.10
18 4 0.10
19 8 0.20
21 12 0.30
22 3 0.08
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (18 bp):
TTATATATTATATTTTTA
Found at i:26132189 original size:30 final size:32
Alignment explanation
Indices: 26132139--26132198 Score: 81
Period size: 30 Copynumber: 1.9 Consensus size: 32
26132129 TTTTTATTTT
26132139 TATACTTTATTATATATTTTT-TGAATTTTTGA
1 TATACTTTATTATATATTTTTAT-AATTTTTGA
*
26132171 TATA-TTTA-TATTTATTTTTATAATTTTT
1 TATACTTTATTATATATTTTTATAATTTTT
26132199 TAAAATTGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
30 17 0.65
31 5 0.19
32 4 0.15
ACGTcount: A:0.28, C:0.02, G:0.03, T:0.67
Consensus pattern (32 bp):
TATACTTTATTATATATTTTTATAATTTTTGA
Found at i:26137430 original size:35 final size:35
Alignment explanation
Indices: 26137390--26137462 Score: 137
Period size: 35 Copynumber: 2.1 Consensus size: 35
26137380 TTGATTGTTA
26137390 AACATTTTACCTTATATTATCTGTTTGTTAATGCT
1 AACATTTTACCTTATATTATCTGTTTGTTAATGCT
*
26137425 AACATTTTACCTTATATTTTCTGTTTGTTAATGCT
1 AACATTTTACCTTATATTATCTGTTTGTTAATGCT
26137460 AAC
1 AAC
26137463 TATCTTTGTA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.26, C:0.15, G:0.08, T:0.51
Consensus pattern (35 bp):
AACATTTTACCTTATATTATCTGTTTGTTAATGCT
Found at i:26139089 original size:13 final size:13
Alignment explanation
Indices: 26139071--26139096 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26139061 ATATTTCTCA
26139071 TATAGATATTATG
1 TATAGATATTATG
26139084 TATAGATATTATG
1 TATAGATATTATG
26139097 CAAAGGTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.46
Consensus pattern (13 bp):
TATAGATATTATG
Found at i:26139413 original size:21 final size:21
Alignment explanation
Indices: 26139374--26139413 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
26139364 AATAATATTA
* * *
26139374 TATATTATAATTTTTTTAATT
1 TATATAATAATTATATTAATT
26139395 TATATAATAATTATATTAA
1 TATATAATAATTATATTAA
26139414 GAATATTATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
TATATAATAATTATATTAATT
Found at i:26139466 original size:58 final size:58
Alignment explanation
Indices: 26139392--26139537 Score: 188
Period size: 58 Copynumber: 2.5 Consensus size: 58
26139382 AATTTTTTTA
* *
26139392 ATTTATATAATAATTATATTAAGAATATTATTAAATTGCATATTA-TTTTATTAAATTAT
1 ATTTA-ATAATAATTATATTAA-AATATGATTAAATTACATATTATTTTTATTAAATTAT
* **
26139451 ATTTAATAATAATTATGTTAAAATATGATTAAATTATTTATTATTTTTATTAAATTAT
1 ATTTAATAATAATTATATTAAAATATGATTAAATTACATATTATTTTTATTAAATTAT
* *
26139509 TTTTAATAATAATCT-TATTAAAATTTGAT
1 ATTTAATAATAAT-TATATTAAAATATGAT
26139538 AATAATAACA
Statistics
Matches: 77, Mismatches: 8, Indels: 5
0.86 0.09 0.06
Matches are distributed among these distances:
57 18 0.23
58 53 0.69
59 6 0.08
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.52
Consensus pattern (58 bp):
ATTTAATAATAATTATATTAAAATATGATTAAATTACATATTATTTTTATTAAATTAT
Found at i:26148563 original size:26 final size:26
Alignment explanation
Indices: 26148527--26148583 Score: 105
Period size: 26 Copynumber: 2.2 Consensus size: 26
26148517 AAGAAAAGAG
26148527 AAAGGATTTCATAAACCTTGAACGCT
1 AAAGGATTTCATAAACCTTGAACGCT
26148553 AAAGGATTTCATAAACCTTGAACGCT
1 AAAGGATTTCATAAACCTTGAACGCT
*
26148579 CAAGG
1 AAAGG
26148584 TTCAAGGAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.39, C:0.19, G:0.18, T:0.25
Consensus pattern (26 bp):
AAAGGATTTCATAAACCTTGAACGCT
Found at i:26149129 original size:12 final size:12
Alignment explanation
Indices: 26149112--26149136 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26149102 AACAACTAGA
26149112 ATATATAAATTT
1 ATATATAAATTT
26149124 ATATATAAATTT
1 ATATATAAATTT
26149136 A
1 A
26149137 CCTGTAATCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
ATATATAAATTT
Found at i:26158885 original size:25 final size:26
Alignment explanation
Indices: 26158847--26158895 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
26158837 TTTATTGATG
*
26158847 TTTGTATTTTAATGGATGGTTCAAAT
1 TTTGTATTGTAATGGATGGTTCAAAT
26158873 TTTGT-TTGTAATGGATGGTTCAA
1 TTTGTATTGTAATGGATGGTTCAA
26158896 TTTATGGACA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 17 0.77
26 5 0.23
ACGTcount: A:0.24, C:0.04, G:0.22, T:0.49
Consensus pattern (26 bp):
TTTGTATTGTAATGGATGGTTCAAAT
Found at i:26161257 original size:26 final size:26
Alignment explanation
Indices: 26161227--26161322 Score: 111
Period size: 26 Copynumber: 3.7 Consensus size: 26
26161217 AAAAATAGTA
26161227 AAATTACCAAAATACCCTTGTAGGGT
1 AAATTACCAAAATACCCTTGTAGGGT
** *
26161253 AAATTACTGAAATACCCTTATAGGGT
1 AAATTACCAAAATACCCTTGTAGGGT
* ** *
26161279 AAATTACCGAAATAATCTTGTAGTGT
1 AAATTACCAAAATACCCTTGTAGGGT
*
26161305 AAAATGACCAAAATACCC
1 -AAATTACCAAAATACCC
26161323 CTAAAGGGTA
Statistics
Matches: 57, Mismatches: 12, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
26 44 0.77
27 13 0.23
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.27
Consensus pattern (26 bp):
AAATTACCAAAATACCCTTGTAGGGT
Found at i:26161283 original size:52 final size:53
Alignment explanation
Indices: 26161227--26161334 Score: 128
Period size: 53 Copynumber: 2.1 Consensus size: 53
26161217 AAAAATAGTA
* * ** * *
26161227 AAATTACCAAAATACCCTTGTAGGGT-AAATTACTGAAATACCCTTATAGGGT
1 AAATTACCAAAATAACCTTGTAGGGTAAAATGACCAAAATACCCCTAAAGGGT
* * *
26161279 AAATTACCGAAATAATCTTGTAGTGTAAAATGACCAAAATACCCCTAAAGGGT
1 AAATTACCAAAATAACCTTGTAGGGTAAAATGACCAAAATACCCCTAAAGGGT
26161332 AAA
1 AAA
26161335 GTGACTGTTT
Statistics
Matches: 46, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
52 22 0.48
53 24 0.52
ACGTcount: A:0.43, C:0.17, G:0.15, T:0.26
Consensus pattern (53 bp):
AAATTACCAAAATAACCTTGTAGGGTAAAATGACCAAAATACCCCTAAAGGGT
Found at i:26162597 original size:46 final size:46
Alignment explanation
Indices: 26162458--26162598 Score: 123
Period size: 46 Copynumber: 3.1 Consensus size: 46
26162448 TCTTAATCTC
26162458 TTGTTCTCTGTCAATAACATCTTATTTTCTAGCATTATTCCATCAA
1 TTGTTCTCTGTCAATAACATCTTATTTTCTAGCATTATTCCATCAA
* * * * * * * *
26162504 TTGTGCATCTGT-AA-CAC-CCCTA---ACTAGTATCCATTTCCGGATTAA
1 TTGTTC-TCTGTCAATAACATCTTATTTTCTAGCAT-TA-TTCC--ATCAA
26162549 TTGTTCTCTGTCAATAACATCTTATTTTCTAGCATTATTCCATCAA
1 TTGTTCTCTGTCAATAACATCTTATTTTCTAGCATTATTCCATCAA
26162595 TTGT
1 TTGT
26162599 GCATCTGTAA
Statistics
Matches: 68, Mismatches: 16, Indels: 22
0.64 0.15 0.21
Matches are distributed among these distances:
41 6 0.09
42 1 0.01
43 4 0.06
44 8 0.12
45 13 0.19
46 17 0.25
47 8 0.12
48 4 0.06
49 1 0.01
50 6 0.09
ACGTcount: A:0.26, C:0.23, G:0.09, T:0.43
Consensus pattern (46 bp):
TTGTTCTCTGTCAATAACATCTTATTTTCTAGCATTATTCCATCAA
Found at i:26162613 original size:91 final size:91
Alignment explanation
Indices: 26162458--26162639 Score: 346
Period size: 91 Copynumber: 2.0 Consensus size: 91
26162448 TCTTAATCTC
26162458 TTGTTCTCTGTCAATAACATCTTATTTTCTAGCATTATTCCATCAATTGTGCATCTGTAACACCC
1 TTGTTCTCTGTCAATAACATCTTATTTTCTAGCATTATTCCATCAATTGTGCATCTGTAACACCC
* *
26162523 CTAACTAGTATCCATTTCCGGATTAA
66 CTAACCAGTATCCATTTCCAGATTAA
26162549 TTGTTCTCTGTCAATAACATCTTATTTTCTAGCATTATTCCATCAATTGTGCATCTGTAACACCC
1 TTGTTCTCTGTCAATAACATCTTATTTTCTAGCATTATTCCATCAATTGTGCATCTGTAACACCC
26162614 CTAACCAGTATCCATTTCCAGATTAA
66 CTAACCAGTATCCATTTCCAGATTAA
26162640 GGTTACGAGG
Statistics
Matches: 89, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
91 89 1.00
ACGTcount: A:0.27, C:0.25, G:0.09, T:0.39
Consensus pattern (91 bp):
TTGTTCTCTGTCAATAACATCTTATTTTCTAGCATTATTCCATCAATTGTGCATCTGTAACACCC
CTAACCAGTATCCATTTCCAGATTAA
Found at i:26168122 original size:23 final size:23
Alignment explanation
Indices: 26168095--26168139 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
26168085 AAATGGATTA
* *
26168095 GAAAACCTAAA-AGAAAACTAAG
1 GAAAAACTAAAGAAAAAACTAAG
26168117 GAAAAACTAAAGAAAAAACTAAG
1 GAAAAACTAAAGAAAAAACTAAG
26168140 ATAATGTGGC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.67, C:0.11, G:0.13, T:0.09
Consensus pattern (23 bp):
GAAAAACTAAAGAAAAAACTAAG
Found at i:26170023 original size:21 final size:20
Alignment explanation
Indices: 26169992--26170032 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
26169982 TAAAATGTTA
26169992 TTAATATATTTTTATATAAAAT
1 TTAATATA-TTTTAT-TAAAAT
26170014 TTAA-ATATTTTATTAAAAT
1 TTAATATATTTTATTAAAAT
26170033 AAATCTTAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.32
20 6 0.32
21 3 0.16
22 4 0.21
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (20 bp):
TTAATATATTTTATTAAAAT
Found at i:26176921 original size:16 final size:16
Alignment explanation
Indices: 26176853--26176921 Score: 52
Period size: 17 Copynumber: 4.2 Consensus size: 16
26176843 AAAATAATAT
*
26176853 TATTTTAATAGATTTAA
1 TATTTTATTA-ATTTAA
* *
26176870 TATTTAATTAAATTTAT
1 TATTTTATT-AATTTAA
* *
26176887 TATTTATCTTAA--TAG
1 TATTT-TATTAATTTAA
26176902 TATTTTATTAATTTAA
1 TATTTTATTAATTTAA
26176918 TATT
1 TATT
26176922 AAAATGATTA
Statistics
Matches: 40, Mismatches: 8, Indels: 9
0.70 0.14 0.16
Matches are distributed among these distances:
14 5 0.12
15 7 0.17
16 6 0.15
17 19 0.47
18 3 0.08
ACGTcount: A:0.38, C:0.01, G:0.03, T:0.58
Consensus pattern (16 bp):
TATTTTATTAATTTAA
Found at i:26178990 original size:32 final size:32
Alignment explanation
Indices: 26178923--26179003 Score: 90
Period size: 32 Copynumber: 2.5 Consensus size: 32
26178913 TAAGGTCTAG
* * *
26178923 GCCATTTTGGGTTGTGTGGGCTAGACGGATAA
1 GCCATTTTGGGTCGTGTGAGCCAGACGGATAA
* * *
26178955 GCCATTTTGGGTCGTGTGAGCCATACGGGTGA
1 GCCATTTTGGGTCGTGTGAGCCAGACGGATAA
* *
26178987 GCCATTTTAGGCCGTGT
1 GCCATTTTGGGTCGTGT
26179004 AGGCCACACA
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 41 1.00
ACGTcount: A:0.16, C:0.17, G:0.36, T:0.31
Consensus pattern (32 bp):
GCCATTTTGGGTCGTGTGAGCCAGACGGATAA
Found at i:26187258 original size:14 final size:15
Alignment explanation
Indices: 26187239--26187267 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
26187229 AACTAAAACC
26187239 ATAAATCG-ATAATT
1 ATAAATCGTATAATT
26187253 ATAAATCGTATAATT
1 ATAAATCGTATAATT
26187268 CCAAAAACTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.38
Consensus pattern (15 bp):
ATAAATCGTATAATT
Found at i:26196802 original size:23 final size:24
Alignment explanation
Indices: 26196755--26196847 Score: 82
Period size: 24 Copynumber: 3.9 Consensus size: 24
26196745 TTCTTGTTAC
* **
26196755 ATGGCTCTTTGTGAGCTTCTTGAT
1 ATGGCTCTTTATGAGCTTCCCGAT
*
26196779 A-GGCTCTTCATGAGCTTCCCGAT
1 ATGGCTCTTTATGAGCTTCCCGAT
** ** *
26196802 ATGATTCTTTATGAAATTCTCGATT
1 ATGGCTCTTTATGAGCTTCCCGA-T
26196827 ATGGCTC-TTATGAGCTTCCCG
1 ATGGCTCTTTATGAGCTTCCCG
26196848 TTATATAACC
Statistics
Matches: 52, Mismatches: 15, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
23 19 0.37
24 27 0.52
25 6 0.12
ACGTcount: A:0.18, C:0.22, G:0.20, T:0.40
Consensus pattern (24 bp):
ATGGCTCTTTATGAGCTTCCCGAT
Found at i:26200250 original size:74 final size:75
Alignment explanation
Indices: 26200165--26200318 Score: 265
Period size: 74 Copynumber: 2.1 Consensus size: 75
26200155 AGAAAAAAAT
* *
26200165 ACTTTAGTATAATAAATTTGAATAGTTAAGTTACTTATTTAAGTCC-CAAATTATTCTTTTTGAA
1 ACTTTAATATAATAAATTTGAATAGTTAAGTTACTTATTTAAGTCCTAAAATTATTCTTTTTGAA
26200229 TTTTTTATTA
66 TTTTTTATTA
*
26200239 ACTTTAATATAATAAATTTGAATCGTTAAGTTACTTATTTAAGTCCTAAAATTATTCTTTTTGAA
1 ACTTTAATATAATAAATTTGAATAGTTAAGTTACTTATTTAAGTCCTAAAATTATTCTTTTTGAA
*
26200304 TTTTTTGTTA
66 TTTTTTATTA
26200314 ACTTT
1 ACTTT
26200319 TTCTATATAT
Statistics
Matches: 75, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
74 44 0.59
75 31 0.41
ACGTcount: A:0.33, C:0.08, G:0.08, T:0.51
Consensus pattern (75 bp):
ACTTTAATATAATAAATTTGAATAGTTAAGTTACTTATTTAAGTCCTAAAATTATTCTTTTTGAA
TTTTTTATTA
Found at i:26204260 original size:28 final size:27
Alignment explanation
Indices: 26204229--26204314 Score: 63
Period size: 29 Copynumber: 3.1 Consensus size: 27
26204219 TAATTTTAAA
26204229 ATATTTAAAATATTTAAATATTAATATC
1 ATATTTAAAATATTTAAATATTAATA-C
*
26204257 ATATATTATAAT-TTTCAATAGTATTAATAC
1 ATAT-TTAAAATATTT-AA-A-TATTAATAC
* * *
26204287 TTATTT-AATTATTTATAT-TTAATA-
1 ATATTTAAAATATTTAAATATTAATAC
26204311 ATAT
1 ATAT
26204315 AATAAATTAT
Statistics
Matches: 47, Mismatches: 6, Indels: 14
0.70 0.09 0.21
Matches are distributed among these distances:
24 3 0.06
25 6 0.13
26 1 0.02
27 1 0.02
28 10 0.21
29 13 0.28
30 5 0.11
31 8 0.17
ACGTcount: A:0.44, C:0.03, G:0.01, T:0.51
Consensus pattern (27 bp):
ATATTTAAAATATTTAAATATTAATAC
Found at i:26205924 original size:146 final size:146
Alignment explanation
Indices: 26205660--26205950 Score: 555
Period size: 146 Copynumber: 2.0 Consensus size: 146
26205650 TATATATGAT
26205660 GCTAATACAACAAGTAATATGTGAAAATACATTAATGTGACATGTGATTTACTAATTTTAACGCA
1 GCTAATACAACAAGTAATATGTGAAAATACATTAATGTGACATGTGATTTACTAATTTTAACGCA
26205725 CATATATAAGGTTTAATATATGATAGCTCAATTATCACTATTGTGACACTTGTAGTGCAGTTAAA
66 CATATATAAGGTTTAATATATGATAGCTCAATTATCACTATTGTGACACTTGTAGTGCAGTTAAA
26205790 TGGTATCCGATAAGCG
131 TGGTATCCGATAAGCG
*
26205806 GCTAATACAACAAGTAATATGTGAAAATACATTAATGTGACATGTGATTTACTAATTTTAATGCA
1 GCTAATACAACAAGTAATATGTGAAAATACATTAATGTGACATGTGATTTACTAATTTTAACGCA
* *
26205871 CATATATAAGGTTTAATATATGATAGCTCAATTATCACTATTGTGGCCCTTGTAGTGCAGTTAAA
66 CATATATAAGGTTTAATATATGATAGCTCAATTATCACTATTGTGACACTTGTAGTGCAGTTAAA
26205936 TGGTATCCGATAAGC
131 TGGTATCCGATAAGC
26205951 ATATATTATG
Statistics
Matches: 142, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
146 142 1.00
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.34
Consensus pattern (146 bp):
GCTAATACAACAAGTAATATGTGAAAATACATTAATGTGACATGTGATTTACTAATTTTAACGCA
CATATATAAGGTTTAATATATGATAGCTCAATTATCACTATTGTGACACTTGTAGTGCAGTTAAA
TGGTATCCGATAAGCG
Found at i:26213236 original size:12 final size:11
Alignment explanation
Indices: 26213209--26213241 Score: 50
Period size: 10 Copynumber: 3.0 Consensus size: 11
26213199 TAATTTTTTA
26213209 ATTTTAAAAA-
1 ATTTTAAAAAT
26213219 ATTTTAAAAATT
1 ATTTTAAAAA-T
26213231 ATTTTAAAAAT
1 ATTTTAAAAAT
26213242 CATAAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 10 0.48
11 1 0.05
12 10 0.48
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (11 bp):
ATTTTAAAAAT
Found at i:26213241 original size:21 final size:22
Alignment explanation
Indices: 26213209--26213254 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
26213199 TAATTTTTTA
**
26213209 ATTTTAAAAAATTTTAAAAATT
1 ATTTTAAAAAATCATAAAAATT
26213231 ATTTT-AAAAATCATAAAAATT
1 ATTTTAAAAAATCATAAAAATT
26213252 ATT
1 ATT
26213255 AAAAACCTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.43
Consensus pattern (22 bp):
ATTTTAAAAAATCATAAAAATT
Found at i:26217332 original size:7 final size:7
Alignment explanation
Indices: 26217317--26217345 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
26217307 TTGTATTTAT
26217317 AAAAA-A
1 AAAAAGA
26217323 AAAAAGA
1 AAAAAGA
26217330 AAAAAGA
1 AAAAAGA
26217337 AAAAAGA
1 AAAAAGA
26217344 AA
1 AA
26217346 TCCAATAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 5 0.23
7 17 0.77
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (7 bp):
AAAAAGA
Found at i:26218108 original size:29 final size:30
Alignment explanation
Indices: 26218070--26218127 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
26218060 TACATTTTGT
*
26218070 TTAAACAAGCTC-TAATACTATT-TTTTTAG
1 TTAAACAAGCCCTTAAT-CTATTATTTTTAG
*
26218099 TTAAATAAGCCCTTAATCTATTATTTTTA
1 TTAAACAAGCCCTTAATCTATTATTTTTA
26218128 CCCATGAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 15 0.60
30 10 0.40
ACGTcount: A:0.34, C:0.14, G:0.05, T:0.47
Consensus pattern (30 bp):
TTAAACAAGCCCTTAATCTATTATTTTTAG
Found at i:26218328 original size:19 final size:20
Alignment explanation
Indices: 26218289--26218329 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
26218279 ATAACACACA
26218289 TAATCACTCTTTTGAAAATTC
1 TAATCACTCTTTT-AAAATTC
*
26218310 TAATTACTCTTTT-AAATTC
1 TAATCACTCTTTTAAAATTC
26218329 T
1 T
26218330 TTTTAGTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 7 0.37
21 12 0.63
ACGTcount: A:0.32, C:0.17, G:0.02, T:0.49
Consensus pattern (20 bp):
TAATCACTCTTTTAAAATTC
Found at i:26219398 original size:246 final size:246
Alignment explanation
Indices: 26218946--26219413 Score: 642
Period size: 246 Copynumber: 1.9 Consensus size: 246
26218936 AACTGAATTA
* * * *
26218946 AAAACATAATTAAAATATAATGAAAAATTTTAAAAAATTAAAAATCATAAAATAATTTTTTTTAA
1 AAAACATAATCAAAATATAATGAAAAATTTAAAAAAATTAAAAACCATAAAATAATTTTTTTAAA
* * * *
26219011 AAATTAAGAATTTTCGACTTTCTAACTGATTTTTTAGGTCGAAATGGTTATAGTTATTTCCAATT
66 AAATTAAGAATTTTCCAATTTCTAACTAATTTTTCAGGTCGAAATGGTTATAGTTATTTCCAATT
* * * *
26219076 ATAGTTTATATGGCACTGGTTCGACATCCAATTCTCAATTCAACCAATTTAATCAATCAATCCTA
131 ATAATTTATATGGCACTGGTTCGACATCCAATTCTCAATTCAACCAATTCAATCAATCAACCCGA
*
26219141 TCTGATTTAGACAATATTGATGATAATTTAAAAATTATTTAAAAACATGAT
196 TCTGATTTAGACAATATTAATGATAATTTAAAAATTATTTAAAAACATGAT
*
26219192 AAAA-ATAATCAAAATATAATGAAAAATTTAAAAATAATTTAAAAACCATAAAATCA-TTTTTTA
1 AAAACATAATCAAAATATAATGAAAAATTTAAAAA-AA-TTAAAAACCATAAAATAATTTTTTTA
* * *
26219255 AAAAATTAAG-ATTTTCCAATTT-TATTACTAATTTTTCAGTTTGAAATGGTTATAGTTATTTTC
64 AAAAATTAAGAATTTTCCAATTTCTA--ACTAATTTTTCAGGTCGAAATGGTTATAGTTATTTCC
* * *
26219318 AATTATAATTTATATGGCA-TCGGTT-GAACATTCAATTCTCGATTCAACCAATTCAATTAATCA
127 AATTATAATTTATATGGCACT-GGTTCG-ACATCCAATTCTCAATTCAACCAATTCAATCAATCA
* *
26219381 ACCCGGTCTGGTTTAGACAATATTAATGATAAT
190 ACCCGATCTGATTTAGACAATATTAATGATAAT
26219414 CATTTATCAT
Statistics
Matches: 194, Mismatches: 22, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
244 2 0.01
245 40 0.21
246 136 0.70
247 16 0.08
ACGTcount: A:0.42, C:0.11, G:0.09, T:0.38
Consensus pattern (246 bp):
AAAACATAATCAAAATATAATGAAAAATTTAAAAAAATTAAAAACCATAAAATAATTTTTTTAAA
AAATTAAGAATTTTCCAATTTCTAACTAATTTTTCAGGTCGAAATGGTTATAGTTATTTCCAATT
ATAATTTATATGGCACTGGTTCGACATCCAATTCTCAATTCAACCAATTCAATCAATCAACCCGA
TCTGATTTAGACAATATTAATGATAATTTAAAAATTATTTAAAAACATGAT
Found at i:26220286 original size:19 final size:19
Alignment explanation
Indices: 26220262--26220299 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
26220252 CTTTGCCAAC
*
26220262 AATTAATTAATTTTAAAAA
1 AATTAAATAATTTTAAAAA
*
26220281 AATTAAATATTTTTAAAAA
1 AATTAAATAATTTTAAAAA
26220300 GTATAAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
AATTAAATAATTTTAAAAA
Found at i:26222688 original size:21 final size:21
Alignment explanation
Indices: 26222662--26222709 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
26222652 TCTTGGATGG
*
26222662 TCTCTTCAAACCACCATCCTT
1 TCTCTTCAAACCACCACCCTT
*
26222683 TCTCTTCAAACCTCCACCCTT
1 TCTCTTCAAACCACCACCCTT
*
26222704 TTTCTT
1 TCTCTT
26222710 TTCTGAAGCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.19, C:0.42, G:0.00, T:0.40
Consensus pattern (21 bp):
TCTCTTCAAACCACCACCCTT
Found at i:26223120 original size:22 final size:21
Alignment explanation
Indices: 26223091--26223135 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 21
26223081 CCAGACCGAT
26223091 AACCCAACCTATCCACGATCC
1 AACCCAACCTATCCACGATCC
*
26223112 AACCACAACCTATTCACGATCC
1 AACC-CAACCTATCCACGATCC
26223134 AA
1 AA
26223136 ACAGTCAACC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.38, C:0.42, G:0.04, T:0.16
Consensus pattern (21 bp):
AACCCAACCTATCCACGATCC
Found at i:26226043 original size:12 final size:12
Alignment explanation
Indices: 26226020--26226071 Score: 50
Period size: 13 Copynumber: 4.0 Consensus size: 12
26226010 AACAATTTGC
*
26226020 CCTTTTTCTTTTT
1 CCTTTTT-TTTCT
26226033 CCTTTTATTTTCT
1 CCTTTT-TTTTCT
26226046 CTCTTCTTTTTTCT
1 C-CTT-TTTTTTCT
*
26226060 CCTTTTTCTTCT
1 CCTTTTTTTTCT
26226072 TCTAGTAGCC
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
12 7 0.21
13 14 0.41
14 11 0.32
15 2 0.06
ACGTcount: A:0.02, C:0.27, G:0.00, T:0.71
Consensus pattern (12 bp):
CCTTTTTTTTCT
Found at i:26226444 original size:15 final size:14
Alignment explanation
Indices: 26226425--26226472 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
26226415 AATTTAGTGT
26226425 TAAAAAATTAAATA
1 TAAAAAATTAAATA
26226439 TAAAAAATATAAATA
1 TAAAAAAT-TAAATA
* *
26226454 T-TAAATTTAAATTA
1 TAAAAAATTAAA-TA
26226468 TAAAA
1 TAAAA
26226473 TTCGTTTTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
13 4 0.14
14 15 0.54
15 9 0.32
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (14 bp):
TAAAAAATTAAATA
Found at i:26228308 original size:42 final size:42
Alignment explanation
Indices: 26228207--26228321 Score: 126
Period size: 43 Copynumber: 2.7 Consensus size: 42
26228197 AGATATCGTG
* *
26228207 TAAGACCGTGTCTGGGACATAGGCCTCGATTGAGATTTACGTA
1 TAAGACCATGTCTGGGACATAGGCATCGATT-AGATTTACGTA
* * *
26228250 TAAGACCATGTGTGGGACATCGGCATCGTATCT-GATTT-TGTA
1 TAAGACCATGTCTGGGACATAGGCATCG-AT-TAGATTTACGTA
* *
26228292 TAAGACCTTGTCTGGGACAGAGGCATCGAT
1 TAAGACCATGTCTGGGACATAGGCATCGAT
26228322 ATTGAATTAC
Statistics
Matches: 61, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
41 2 0.03
42 27 0.44
43 29 0.48
44 2 0.03
45 1 0.02
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (42 bp):
TAAGACCATGTCTGGGACATAGGCATCGATTAGATTTACGTA
Found at i:26242779 original size:28 final size:28
Alignment explanation
Indices: 26242747--26242909 Score: 143
Period size: 28 Copynumber: 5.8 Consensus size: 28
26242737 ACTCTACAAG
* *
26242747 GACTACCTTTCAAGTAAGAGTCCACATA
1 GACTATCTTTCAAGCAAGAGTCCACATA
* * * *
26242775 AACTATCTCTCAAGCAAGAGTGCACATT
1 GACTATCTTTCAAGCAAGAGTCCACATA
**
26242803 GACTATCTTTCAAGCAAGAGTCTGCATA
1 GACTATCTTTCAAGCAAGAGTCCACATA
* **
26242831 GACTATCTTTCAAACAAGAGTCTGCAT-
1 GACTATCTTTCAAGCAAGAGTCCACATA
* * *
26242858 GTACAATCTTTCAAACAAGAGTTCACAT-
1 G-ACTATCTTTCAAGCAAGAGTCCACATA
*
26242886 GAACTAT-TCTTCAAGCAACAGTCC
1 G-ACTATCT-TTCAAGCAAGAGTCC
26242910 GCAAGAACTA
Statistics
Matches: 111, Mismatches: 22, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
27 2 0.02
28 109 0.98
ACGTcount: A:0.35, C:0.24, G:0.14, T:0.27
Consensus pattern (28 bp):
GACTATCTTTCAAGCAAGAGTCCACATA
Found at i:26245506 original size:14 final size:14
Alignment explanation
Indices: 26245487--26245572 Score: 100
Period size: 14 Copynumber: 6.1 Consensus size: 14
26245477 AATCTGCATT
26245487 TATGAATTCACATG
1 TATGAATTCACATG
* * *
26245501 TATGAATTCGCCTA
1 TATGAATTCACATG
*
26245515 TATGGATTCACATG
1 TATGAATTCACATG
*
26245529 TATGAATTCGCATG
1 TATGAATTCACATG
* *
26245543 TATGAATCCACATC
1 TATGAATTCACATG
*
26245557 TATGAATCCACATG
1 TATGAATTCACATG
26245571 TA
1 TA
26245573 AGAGTCCGTA
Statistics
Matches: 59, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
14 59 1.00
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.34
Consensus pattern (14 bp):
TATGAATTCACATG
Found at i:26247738 original size:35 final size:35
Alignment explanation
Indices: 26247692--26247763 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
26247682 TGATGACCAT
26247692 GTGATGTATGCCATAATGAATGCTTGATTAAAAAA
1 GTGATGTATGCCATAATGAATGCTTGATTAAAAAA
26247727 GTGATGTATGCCATAATGAATGCTTGATTAAAAAA
1 GTGATGTATGCCATAATGAATGCTTGATTAAAAAA
26247762 GT
1 GT
26247764 TCATATGCTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.39, C:0.08, G:0.21, T:0.32
Consensus pattern (35 bp):
GTGATGTATGCCATAATGAATGCTTGATTAAAAAA
Found at i:26251165 original size:20 final size:20
Alignment explanation
Indices: 26251140--26251181 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
26251130 TATTTTTCCT
26251140 AAACTTTCTAAATTGTTTCA
1 AAACTTTCTAAATTGTTTCA
26251160 AAACTTTCTAAATTGTTTCA
1 AAACTTTCTAAATTGTTTCA
26251180 AA
1 AA
26251182 TTGGTCTCGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.38, C:0.14, G:0.05, T:0.43
Consensus pattern (20 bp):
AAACTTTCTAAATTGTTTCA
Found at i:26255316 original size:13 final size:13
Alignment explanation
Indices: 26255298--26255328 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
26255288 AAATCAGATC
26255298 TTTACTACTCATT
1 TTTACTACTCATT
26255311 TTTACTACTCATT
1 TTTACTACTCATT
26255324 TTTAC
1 TTTAC
26255329 AACTTTTACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.23, C:0.23, G:0.00, T:0.55
Consensus pattern (13 bp):
TTTACTACTCATT
Found at i:26257046 original size:46 final size:47
Alignment explanation
Indices: 26256996--26257173 Score: 227
Period size: 47 Copynumber: 3.8 Consensus size: 47
26256986 ATAATTTCAC
* *
26256996 CCATAATGAACTCGGAACGCAACTCAACGAGCTCGGGTG-TTCACAT
1 CCATAATGAACTCGGAACGCAACTCAACGAGTTCGGATGCTTCACAT
* *
26257042 CCATAATGAACTCGGAACACAACTCAACGAGTTCGGATGCTT-GCAT
1 CCATAATGAACTCGGAACGCAACTCAACGAGTTCGGATGCTTCACAT
* * *
26257088 CCATAAGTGAACTCAGAATGCAACTCAACGAGTTCGGATGCTTCATAAT
1 CCATAA-TGAACTCGGAACGCAACTCAACGAGTTCGGATGCTTCA-CAT
* * *
26257137 TC-TCATGAACTCGGAATGCAACTCAACGAGTTCGGAT
1 CCATAATGAACTCGGAACGCAACTCAACGAGTTCGGAT
26257174 CTCAATTTCC
Statistics
Matches: 116, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
46 45 0.39
47 66 0.57
48 2 0.02
49 3 0.03
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.22
Consensus pattern (47 bp):
CCATAATGAACTCGGAACGCAACTCAACGAGTTCGGATGCTTCACAT
Found at i:26260318 original size:48 final size:48
Alignment explanation
Indices: 26260194--26260431 Score: 257
Period size: 48 Copynumber: 4.9 Consensus size: 48
26260184 AAAAGGGTAA
* *
26260194 AATGCCGATGCCATGTCCCGGACATGGTCTTACACTGGCTCTCAT-AC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAAC
* * *
26260241 ATTGGTGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAAC
1 A---ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAAC
* * **
26260292 AATGCCGATGCCATGGT-CCAAACATGGTCTTACACTGGCT-AGTATATT
1 AATGCCGATGCCAT-GTCCCAGACATGGTCTTACACTGGCTCA-CATAAC
* * ** *
26260340 GATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTTCGTAAC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAAC
* * *
26260388 AATGCTGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACA
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACA
26260432 CATAACCCTA
Statistics
Matches: 155, Mismatches: 28, Indels: 15
0.78 0.14 0.08
Matches are distributed among these distances:
47 4 0.03
48 107 0.69
49 2 0.01
50 39 0.25
51 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (48 bp):
AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAAC
Found at i:26260378 original size:96 final size:96
Alignment explanation
Indices: 26260194--26260434 Score: 333
Period size: 96 Copynumber: 2.5 Consensus size: 96
26260184 AAAAGGGTAA
** * *
26260194 AATGCCGATGCCAT-GTCCCGGACATGGTCTTACACTGGCTCTCATACATTGGTGTCGATGCCAT
1 AATGCCGATGCCATGGT-CCAAACATGGTCTTACACTGG--CTCATACATTGATGCCGATGCCAT
26260258 GTCCCAGACATGGTCTTACACTAGCTCACATAAC
63 GTCCCAGACATGGTCTTACACTAGCTCACATAAC
*
26260292 AATGCCGATGCCATGGTCCAAACATGGTCTTACACTGGCT-AGTATATTGATGCCGATGCCATGT
1 AATGCCGATGCCATGGTCCAAACATGGTCTTACACTGGCTCA-TACATTGATGCCGATGCCATGT
** *
26260356 CCCAGACATGGTCTTACACTAGCTTTCGTAAC
65 CCCAGACATGGTCTTACACTAGCTCACATAAC
* * *
26260388 AATGCTGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACACAT
1 AATGCCGATGCCATGGTCCAAACATGGTCTTACACTGGCTCATACAT
26260435 AACCCTAGTA
Statistics
Matches: 128, Mismatches: 12, Indels: 8
0.86 0.08 0.05
Matches are distributed among these distances:
95 1 0.01
96 91 0.71
97 1 0.01
98 33 0.26
99 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (96 bp):
AATGCCGATGCCATGGTCCAAACATGGTCTTACACTGGCTCATACATTGATGCCGATGCCATGTC
CCAGACATGGTCTTACACTAGCTCACATAAC
Found at i:26263885 original size:28 final size:28
Alignment explanation
Indices: 26263845--26263933 Score: 160
Period size: 28 Copynumber: 3.2 Consensus size: 28
26263835 ATGTACTAGA
26263845 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
26263873 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
* *
26263901 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATTACCATT
26263929 ATACC
1 ATACC
26263934 TCTAGGGTTG
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 59 1.00
ACGTcount: A:0.35, C:0.26, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATTACCATT
Found at i:26264084 original size:28 final size:29
Alignment explanation
Indices: 26264044--26264105 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 29
26264034 GGAAGCGTCT
* *
26264044 TGGTGGCTATGCCACAAATTATCTGT-TC
1 TGGTGGCCATGCCACAAAATATCTGTATC
*
26264072 TGGTGGCCCTGCCACAAAATATCTGTATC
1 TGGTGGCCATGCCACAAAATATCTGTATC
26264101 TGGTG
1 TGGTG
26264106 ACTCTGTCAC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 23 0.77
29 7 0.23
ACGTcount: A:0.21, C:0.23, G:0.24, T:0.32
Consensus pattern (29 bp):
TGGTGGCCATGCCACAAAATATCTGTATC
Found at i:26264116 original size:29 final size:28
Alignment explanation
Indices: 26264053--26264116 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 28
26264043 TTGGTGGCTA
* *
26264053 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACCC
*
26264081 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACCC
*
26264110 TGTCACA
1 TGCCACA
26264117 TTTTCTGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 16 0.52
29 15 0.48
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACCC
Found at i:26266374 original size:13 final size:13
Alignment explanation
Indices: 26266356--26266380 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26266346 GAGCCATCAA
26266356 CAAAGGAACGAAG
1 CAAAGGAACGAAG
26266369 CAAAGGAACGAA
1 CAAAGGAACGAA
26266381 AGAGCCTCGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.16, G:0.28, T:0.00
Consensus pattern (13 bp):
CAAAGGAACGAAG
Found at i:26269432 original size:21 final size:21
Alignment explanation
Indices: 26269402--26269443 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
26269392 GATACCTAGT
26269402 AAAAGATATTGATACTTTTTG
1 AAAAGATATTGATACTTTTTG
* *
26269423 AAAAGGTATTGATATTTTTTG
1 AAAAGATATTGATACTTTTTG
26269444 TCATTGTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.36, C:0.02, G:0.17, T:0.45
Consensus pattern (21 bp):
AAAAGATATTGATACTTTTTG
Found at i:26274998 original size:52 final size:52
Alignment explanation
Indices: 26274936--26275041 Score: 212
Period size: 52 Copynumber: 2.0 Consensus size: 52
26274926 ATCAGTCGAC
26274936 TTTGAAAATGGTGCCTTATGAGGCATTATACGGACGTAAGTGCCAAACACCT
1 TTTGAAAATGGTGCCTTATGAGGCATTATACGGACGTAAGTGCCAAACACCT
26274988 TTTGAAAATGGTGCCTTATGAGGCATTATACGGACGTAAGTGCCAAACACCT
1 TTTGAAAATGGTGCCTTATGAGGCATTATACGGACGTAAGTGCCAAACACCT
26275040 TT
1 TT
26275042 GTATTGGACA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 54 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (52 bp):
TTTGAAAATGGTGCCTTATGAGGCATTATACGGACGTAAGTGCCAAACACCT
Found at i:26276333 original size:13 final size:13
Alignment explanation
Indices: 26276317--26276347 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
26276307 GTGATTTTTA
26276317 AAATGAGTAGTAG
1 AAATGAGTAGTAG
26276330 AAATGAGTAGTAG
1 AAATGAGTAGTAG
26276343 AAATG
1 AAATG
26276348 TGAAATAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.48, C:0.00, G:0.29, T:0.23
Consensus pattern (13 bp):
AAATGAGTAGTAG
Found at i:26288464 original size:48 final size:47
Alignment explanation
Indices: 26288290--26288469 Score: 127
Period size: 48 Copynumber: 3.9 Consensus size: 47
26288280 GTTATGTGTA
* * * * *
26288290 ATCCCATGTAAGACCATGTCCAGGACATGGCTTTGGCATCGATATGTA
1 ATCCCATGTAAGACCATATCCGGGACATGGCATTGGCATCCA-ATGTG
** * * ** *
26288338 ATTTCGTGTAAGACCATAGCTAGG-C-T---ATCGGCATCTCAATGTG
1 ATCCCATGTAAGACCATATCCGGGACATGGCATTGGCATC-CAATGTG
* * *
26288381 ATCCCATGTAAGGCCATGTCTGGGACATGGCATTGGCATCCATATGTG
1 ATCCCATGTAAGACCATATCCGGGACATGGCATTGGCATCCA-ATGTG
* * * *
26288429 ATCCCATGTAAGACTATATCCGGGATATGGTATTGGTATCC
1 ATCCCATGTAAGACCATATCCGGGACATGGCATTGGCATCC
26288470 TACCATGTGT
Statistics
Matches: 100, Mismatches: 25, Indels: 14
0.72 0.18 0.10
Matches are distributed among these distances:
43 28 0.28
44 2 0.02
45 1 0.01
46 1 0.01
47 3 0.03
48 65 0.65
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.29
Consensus pattern (47 bp):
ATCCCATGTAAGACCATATCCGGGACATGGCATTGGCATCCAATGTG
Found at i:26296288 original size:30 final size:30
Alignment explanation
Indices: 26296252--26296311 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
26296242 ATTTAATATG
*
26296252 AACTTTTGCA-AAGTTACATTTTTGCCCCTA
1 AACTTTTGCATAA-TTACACTTTTGCCCCTA
26296282 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTTGCATAATTACACTTTTGCCCCTA
26296312 GGCTCGAGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 26 0.93
31 2 0.07
ACGTcount: A:0.27, C:0.25, G:0.08, T:0.40
Consensus pattern (30 bp):
AACTTTTGCATAATTACACTTTTGCCCCTA
Found at i:26300160 original size:55 final size:55
Alignment explanation
Indices: 26300091--26300209 Score: 132
Period size: 55 Copynumber: 2.2 Consensus size: 55
26300081 GCCAAAACAG
* * * * *
26300091 CACGGGCGTGCGACATGCCCGT-TCCTTGAACCCGTGACTGAACCTGTCAAATTAA
1 CACGGGCGTACGACACGCCCGTGT-CTAGAACCCGTGACCGAACCTATCAAATTAA
* * * *
26300146 CACGGGCGTACGACACGCTCGTGTCTAGCACCCGTGGCCGAACCTATTAAATTAA
1 CACGGGCGTACGACACGCCCGTGTCTAGAACCCGTGACCGAACCTATCAAATTAA
*
26300201 CACAGGCGT
1 CACGGGCGT
26300210 GGGCCCATAT
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
55 52 0.98
56 1 0.02
ACGTcount: A:0.24, C:0.31, G:0.24, T:0.20
Consensus pattern (55 bp):
CACGGGCGTACGACACGCCCGTGTCTAGAACCCGTGACCGAACCTATCAAATTAA
Found at i:26302985 original size:29 final size:30
Alignment explanation
Indices: 26302941--26303000 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 30
26302931 TCCCCGAGCC
26302941 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
26302971 TAGGGG-AAAATTGTAATTTTGTAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
26303000 T
1 T
26303001 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 20 0.77
30 6 0.23
ACGTcount: A:0.40, C:0.03, G:0.25, T:0.32
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:26303778 original size:67 final size:64
Alignment explanation
Indices: 26303659--26303808 Score: 160
Period size: 67 Copynumber: 2.3 Consensus size: 64
26303649 ATACAGATAG
* * * *
26303659 TATGTAGCTAGGTCACATGTATGGTGCTAAGTGCACATCATGTGTACAAGAGAGCTACAAGACAT
1 TATGTAGCTAGGTCGCATGGATGATGCTAAGTGCACACCATGTGTACAAGAGAGCTAC--GACA-
26303724 TA
63 TA
* * * **
26303726 TGATGTAGCTAGGTCGCATGGGTGAT-CTATGTGTACACCATGTAG-ACAAGAGAGCTACGGGAT
1 T-ATGTAGCTAGGTCGCATGGATGATGCTAAGTGCACACCATGT-GTACAAGAGAGCTACGACAT
26303789 A
64 A
26303790 TATGTAGCTAGGTCGCATG
1 TATGTAGCTAGGTCGCATG
26303809 TGTAGTACTA
Statistics
Matches: 72, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
63 18 0.25
64 3 0.04
65 2 0.03
67 28 0.39
68 21 0.29
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.27
Consensus pattern (64 bp):
TATGTAGCTAGGTCGCATGGATGATGCTAAGTGCACACCATGTGTACAAGAGAGCTACGACATA
Found at i:26303929 original size:49 final size:50
Alignment explanation
Indices: 26303798--26303944 Score: 224
Period size: 50 Copynumber: 3.0 Consensus size: 50
26303788 TATATGTAGC
*
26303798 TAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAAT
1 TAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAAT
* * *
26303848 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAAT
1 TAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAAT
* * *
26303898 T-GGTCGCATGTGTAGTACTAAGTGCAAGCTACTATGCGTACCAGATA
1 TAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
26303945 GTTTGGCTAC
Statistics
Matches: 87, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
49 40 0.46
50 47 0.54
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (50 bp):
TAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAAT
Found at i:26305805 original size:12 final size:13
Alignment explanation
Indices: 26305786--26305821 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
26305776 ATGTTTAAAA
26305786 ACTTTTATTTTTT
1 ACTTTTATTTTTT
*
26305799 A-TTTTATGTTTT
1 ACTTTTATTTTTT
26305811 ACTTTTATTTT
1 ACTTTTATTTT
26305822 ATTTTAAGAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
12 11 0.55
13 9 0.45
ACGTcount: A:0.17, C:0.06, G:0.03, T:0.75
Consensus pattern (13 bp):
ACTTTTATTTTTT
Found at i:26313666 original size:38 final size:38
Alignment explanation
Indices: 26313578--26313743 Score: 197
Period size: 38 Copynumber: 4.3 Consensus size: 38
26313568 AAACCCAAAC
* * *
26313578 ATAACACCAGCACGAAGCCTACGGGACTTTAAACTCAGAT
1 ATAATACCAGCACGAAGCCTACGGGA-TTT-AACCCGGAT
* *
26313618 ATAATACCAGCACTAGGCCTACGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTACGGGATTTAACCCGGAT
* * *
26313656 ATAATACCAGCACGGAGCCTGCAGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTACGGGATTTAACCCGGAT
* ** *
26313694 ATATTACCAGCACGAAGCCTGTGGGATTTAACCTGGAT
1 ATAATACCAGCACGAAGCCTACGGGATTTAACCCGGAT
*
26313732 ATAATTCCAGCA
1 ATAATACCAGCA
26313744 TATAGCCTGC
Statistics
Matches: 109, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
38 83 0.76
39 3 0.03
40 23 0.21
ACGTcount: A:0.33, C:0.25, G:0.20, T:0.21
Consensus pattern (38 bp):
ATAATACCAGCACGAAGCCTACGGGATTTAACCCGGAT
Found at i:26327105 original size:19 final size:19
Alignment explanation
Indices: 26327083--26327121 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
26327073 ACCTGCCAAG
26327083 ATAAAGAAAAAGTA-AATTA
1 ATAAAGAAAAA-TAGAATTA
*
26327102 ATAAATAAAAATAGAATTA
1 ATAAAGAAAAATAGAATTA
26327121 A
1 A
26327122 ATTAAATTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 2 0.11
19 16 0.89
ACGTcount: A:0.69, C:0.00, G:0.08, T:0.23
Consensus pattern (19 bp):
ATAAAGAAAAATAGAATTA
Done.