Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 8 of 344
Found at i:2939661 original size:48 final size:48
Alignment explanation
Indices: 2939567--2939662 Score: 174
Period size: 48 Copynumber: 2.0 Consensus size: 48
2939557 GACAGTACAT
*
2939567 ACACAAGTTGACTGTGGACCGACAAGCCAGCTTCTATTCAATTTTGAG
1 ACACAAGTTGACTGTGGACCGACAAGCCAGCTTCTATTCAACTTTGAG
*
2939615 ACACAAGTTGACTGTGGACCGACAAGCCAGCTTCTATTCAGCTTTGAG
1 ACACAAGTTGACTGTGGACCGACAAGCCAGCTTCTATTCAACTTTGAG
2939663 TAAAATCTAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (48 bp):
ACACAAGTTGACTGTGGACCGACAAGCCAGCTTCTATTCAACTTTGAG
Found at i:2943247 original size:16 final size:17
Alignment explanation
Indices: 2943226--2943261 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
2943216 AGAAAATTGC
2943226 ATTTATTTT-TAAAACA
1 ATTTATTTTATAAAACA
*
2943242 ATTTATTTTATAAAATA
1 ATTTATTTTATAAAACA
2943259 ATT
1 ATT
2943262 CTTTTAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (17 bp):
ATTTATTTTATAAAACA
Found at i:2945954 original size:16 final size:17
Alignment explanation
Indices: 2945933--2945970 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
2945923 TAGCACGTAA
2945933 AAAAAATTATC-ATGAT
1 AAAAAATTATCAATGAT
* *
2945949 AAAAAATTTTCAATGTT
1 AAAAAATTATCAATGAT
2945966 AAAAA
1 AAAAA
2945971 TCAAATTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 10 0.53
17 9 0.47
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.32
Consensus pattern (17 bp):
AAAAAATTATCAATGAT
Found at i:2954339 original size:2 final size:2
Alignment explanation
Indices: 2954332--2954368 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
2954322 AAGCCAATAA
2954332 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A- AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
2954369 TTTAATTATA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:2959864 original size:12 final size:13
Alignment explanation
Indices: 2959834--2959871 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
2959824 TATCACGTTC
*
2959834 TATCTTTTTCATT
1 TATCTTTTTTATT
2959847 TATCTTTTTTATT
1 TATCTTTTTTATT
*
2959860 T-TCTTCTTTATT
1 TATCTTTTTTATT
2959872 GTTCCAATCT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 10 0.43
13 13 0.57
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.74
Consensus pattern (13 bp):
TATCTTTTTTATT
Found at i:2968938 original size:22 final size:22
Alignment explanation
Indices: 2968905--2968967 Score: 90
Period size: 22 Copynumber: 2.9 Consensus size: 22
2968895 GCAACCATGA
*
2968905 AGCAGCCTCATACCTCCACTAC
1 AGCAGCCCCATACCTCCACTAC
* *
2968927 AGCGGCCCCATACCCCCACTAC
1 AGCAGCCCCATACCTCCACTAC
*
2968949 AGCAGTCCCATACCTCCAC
1 AGCAGCCCCATACCTCCAC
2968968 AGCCCTCGTA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.25, C:0.49, G:0.11, T:0.14
Consensus pattern (22 bp):
AGCAGCCCCATACCTCCACTAC
Found at i:2982345 original size:68 final size:69
Alignment explanation
Indices: 2982181--2982354 Score: 217
Period size: 70 Copynumber: 2.5 Consensus size: 69
2982171 CTTTCCAAGG
* ** *
2982181 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTCCAGGTATTTTTAATTTTG
2982246 TTTT
66 TTTT
** * *
2982250 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACG-CCAGGTATTTTTAGTTTA
1 -AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTCCAGGTATTTTTAATTT-
2982314 TGTTTT
64 TGTTTT
** *
2982320 -AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
2982355 TTTAATTTTT
Statistics
Matches: 92, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
68 32 0.35
69 14 0.15
70 46 0.50
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (69 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTCCAGGTATTTTTAATTTTG
TTTT
Found at i:2982563 original size:148 final size:147
Alignment explanation
Indices: 2982358--2982707 Score: 434
Period size: 148 Copynumber: 2.3 Consensus size: 147
2982348 TAAGCCTTTT
* ** ** *
2982358 AATTTTTGTTTTTCAAAATCAACTCATATTGTTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
1 AATTTCTG-TTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGG
2982423 TAATTTCAATTTCTGTTGTT-AAAAAAAAATCAACTCATATTGCGAGAAATGAGTTAAGCCTCAG
65 TAATTTCAATTTCTGTT-TTCAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTAAGCCTC-G
2982487 G-ACATGCTGAGGTAATTTC
128 GTACATGCTGAGGTAATTTC
* *
2982506 AATTTCTGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGG
* * ** *
2982571 TATTTTCAATTTCTGTTTTCAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGT
65 TAATTTCAATTTCTGTTTTCAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTAAGCCTCGG-
*
2982636 TCACATGCTGAGGTATTTTC
129 T-ACATGCTGAGGTAATTTC
* **
2982656 AATTTCTGTTTTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 AATTTCTG-TTTT----CAAAATCAACTCATATTGCGAGAAATGAGTTGAGC
2982708 TTCAGATTAC
Statistics
Matches: 174, Mismatches: 18, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
147 13 0.07
148 101 0.58
150 25 0.14
151 4 0.02
154 27 0.16
155 4 0.02
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34
Consensus pattern (147 bp):
AATTTCTGTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGT
AATTTCAATTTCTGTTTTCAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTAAGCCTCGGTA
CATGCTGAGGTAATTTC
Found at i:2982658 original size:78 final size:76
Alignment explanation
Indices: 2982372--2982712 Score: 442
Period size: 76 Copynumber: 4.5 Consensus size: 76
2982362 TTTGTTTTTC
**
2982372 AAAATCAACTCATATTGTTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
2982437 GTTGTT-AAAAA
66 GTT-TTCAAAAA
** * *
2982448 AAAATCAACTCATATTGCGAGAAATGAGTTAAGCCTCAGGACATGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
2982513 GTTTTC----A
66 GTTTTCAAAAA
* * ** * * *
2982520 AAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
2982585 GTTTTCAAAAA
66 GTTTTCAAAAA
* * *
2982596 AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCAATT
*
2982660 TCTGTTTTTAAAAA
63 TCTGTTTTCAAAAA
*
2982674 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
2982713 ATTACACACT
Statistics
Matches: 234, Mismatches: 22, Indels: 15
0.86 0.08 0.06
Matches are distributed among these distances:
72 65 0.28
75 3 0.01
76 97 0.41
78 68 0.29
79 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.33
Consensus pattern (76 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
GTTTTCAAAAA
Found at i:2983131 original size:88 final size:87
Alignment explanation
Indices: 2982936--2983181 Score: 289
Period size: 88 Copynumber: 2.8 Consensus size: 87
2982926 TGTTTTAATT
*
2982936 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACGCCGAGGTATTTTCAATTAAGC-
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACA--CCGAGGTATTTTCAATT--TCT
* * *
2983000 CTTTTGATTTCTGTTTTTCAAAAAAA
62 GTTTTCATTTATGTTTTTCAAAAAAA
* * *
2983026 TCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGTCACACCGAGGTATTTTCCATTTCTGTTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACCGAGGTATTTTCAATTTCTGTTT
* *
2983091 TCATTATTATGTTTTT-GAAAGAA
66 TCA-T-TTATGTTTTTCAAAAAAA
** * ** *
2983114 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAATTTCAATTTCTGTTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACCGAGGTATTTTCAATTTCTGTTT
2983179 TCA
66 TCA
2983182 AAATTCAACT
Statistics
Matches: 135, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
86 1 0.01
87 5 0.04
88 81 0.60
89 9 0.07
90 39 0.29
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (87 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACCGAGGTATTTTCAATTTCTGTTT
TCATTTATGTTTTTCAAAAAAA
Found at i:2983298 original size:73 final size:73
Alignment explanation
Indices: 2983103--2983865 Score: 644
Period size: 73 Copynumber: 10.1 Consensus size: 73
2983093 ATTATTATGT
* * *
2983103 TTTTGAAAGAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAATTTC
1 TTTTCAAA-AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
2983168 AATTTCTG-
65 AATTTCTGC
* *
2983176 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTAAGGTATTTTCA
1 TTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
2983241 ATTTCTGC
66 ATTTCTGC
* * * * *
2983249 TTTTCAAAATTCAACTCATATTGCGACAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
1 TTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
2983314 ATTTCTG-
66 ATTTCTGC
* ** *
2983321 TTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTT
1 TTTTC--AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTT
2983386 CAATTTCTGC
64 CAATTTCTGC
**
2983396 TTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTT
1 TTTTC-A-AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTT
*
2983461 CAATTCCTGTTC
64 CAATTTCTG--C
* ** * *
2983473 AATTTATATTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 ---------TTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
* *
2983538 GTAATTTCAATTTCTGT
57 GTATTTTCAATTTCTGC
** ** * ** *
2983555 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGATGTATTTTCA
1 TTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
* *
2983620 AATTCTAC
66 ATTTCTGC
** *
2983628 -TTTCAAAAAATCAACTCATATTGC-A-AAAGGTGAGTTGAGCCT-TGGCTCACGTGTTGA-GTC
1 TTTTC-AAAAATCAACTCATATTGCGAGAAA--TGAGTTGAGCCTCAAG-ACAC--GTTGAGGT-
*
2983688 ACTTTCAATTTCTGTTTTTATGTC
59 ATTTTCAATTTC--------TG-C
* ** ** * *
2983712 TGTTTTC-TAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTT
1 --TTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTT
*
2983776 CAATTACTG-
64 CAATTTCTGC
* * * ** * * *
2983785 TTTGGCAAAAACCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTATTTTC
1 TTT-TCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
* *
2983850 CATTTCTGT
65 AATTTCTGC
2983859 TTTTCAA
1 TTTTCAA
2983866 TTTATGTTTT
Statistics
Matches: 584, Mismatches: 64, Indels: 84
0.80 0.09 0.11
Matches are distributed among these distances:
71 4 0.01
72 72 0.12
73 233 0.40
74 66 0.11
75 83 0.14
77 1 0.00
83 15 0.03
84 64 0.11
85 33 0.06
86 8 0.01
87 5 0.01
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (73 bp):
TTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
ATTTCTGC
Found at i:2983633 original size:159 final size:159
Alignment explanation
Indices: 2983328--2983620 Score: 464
Period size: 159 Copynumber: 1.9 Consensus size: 159
2983318 CTGTTGTCAA
* *
2983328 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTAATTTCAATTTC
**
2983393 TGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAT
66 TGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTAT
2983458 TTTCAATTCCTGTTCAATTTATATTTTTC
131 TTTCAATTCCTGTTCAATTTATATTTTTC
* * *
2983487 AAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTAATTTCAATTTC
* ** * *
2983552 TGTTTTTC-A-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGATGTAT
66 TGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTAT
2983615 TTTCAA
131 TTTCAA
2983621 ATTCTACTTT
Statistics
Matches: 122, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
157 54 0.44
158 1 0.01
159 67 0.55
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (159 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTAATTTCAATTTC
TGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTAT
TTTCAATTCCTGTTCAATTTATATTTTTC
Found at i:2983754 original size:158 final size:157
Alignment explanation
Indices: 2983555--2983941 Score: 444
Period size: 158 Copynumber: 2.4 Consensus size: 157
2983545 CAATTTCTGT
*
2983555 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGATGTATTTTCA
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTC-
* * * * *
2983620 AATT-CTACTTT-CAAAAAATCAACTCATATTGCAAAAGGTGAGTTGAGCCT-TGGCTCACGTGT
65 AATTACT-CTTTGC-AAAAACCAACTCATACTGCAAAAGGTGAGTTGAGCCTCAGG---ACATGC
*
2983682 TGA-GTCACTTTCAATTTCTGTTTTT-ATGTCTG
125 TGAGGT-ACTTTCAATTTCTGTTTTTAATGTATG
* *
2983714 TTTTC-TAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCA
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCA
* * *
2983778 ATTACTGTTTGGCAAAAACCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGG
66 ATTACTCTTT-GCAAAAACCAACTCATACTGCAAAAGGTGAGTTGAGCCTCAGGACATGCTGAGG
* * *
2983843 TATTTTCCATTTCTGTTTTTCAATTTATG
130 TACTTTCAATTTCTGTTTTT-AATGTATG
* * * * **
2983872 TTTTCAAAAATCAATTCATATTGCTAAAGGTGAGTTGAGCCTCGGCTCGCACGCTAAGGTATTTT
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GGCACGCCGAGGTATTTT
2983937 CAATT
64 CAATT
2983942 TTTCGTTTTT
Statistics
Matches: 197, Mismatches: 21, Indels: 18
0.83 0.09 0.08
Matches are distributed among these distances:
156 24 0.12
157 9 0.05
158 100 0.51
159 43 0.22
161 21 0.11
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (157 bp):
TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCA
ATTACTCTTTGCAAAAACCAACTCATACTGCAAAAGGTGAGTTGAGCCTCAGGACATGCTGAGGT
ACTTTCAATTTCTGTTTTTAATGTATG
Found at i:2983803 original size:231 final size:230
Alignment explanation
Indices: 2983112--2983849 Score: 791
Period size: 231 Copynumber: 3.2 Consensus size: 230
2983102 TTTTTGAAAG
** ** * * *
2983112 AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAATTTCAATTTCT-G
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACCGAGGTATTTTCAAATTCTAC
* * *
2983176 TTTTC-A-AAATTCAACTCATATTGCGAGAAA--TGAGTTGAGCCTCAAGACACGTTAAGGTATT
66 TTTTCAAGAAAATCAACTCATATTGC-A-AAAGGTGAGTTGAGCCTCAAGACACGTTGAGGTACT
* * **
2983237 TTCAATTTCTG--------C--TTTTCAAAATTCAACTCATATTGCGACAAATGAGTTGAGCCTC
129 TTCAATTCCTGTTATTTATCTGTTTTCAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
2983292 AGGACACGCTGAGGTAATTTCAATTTCTG-TTGTCAAAAA
193 AGGACACGCTGAGGTAATTTCAATTTCTGTTTGTC--AAA
** * *
2983331 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTGC
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACCGAGGTATTTTCAAATTCTAC
* * *
2983396 TTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTT
66 TTTTCAAGAAAATCAACTCATATTGCAAAAGGTGAGTTGAGCCTCAAGACACGTTGAGGTACTTT
* *
2983461 CAATTCCTGTTCAATTTATAT-TTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTC
131 CAATTCCTGTT--ATTTATCTGTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
*
2983525 AGGACACGCTGAGGTAATTTCAATTTCTGTTTTTCAAA
193 AGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAA
** * * *
2983563 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGATGTATTTTCAAATTCTAC
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACCGAGGTATTTTCAAATTCTAC
** *
2983628 -TTTCAA-AAAATCAACTCATATTGCAAAAGGTGAGTTGAGCCT-TGGCTCACGTGTTGA-GTCA
66 TTTTCAAGAAAATCAACTCATATTGCAAAAGGTGAGTTGAGCCTCAAG-ACAC--GTTGAGGT-A
* *
2983689 CTTTCAATTTCTGTT-TTTATGTCTGTTTTCTAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
127 CTTTCAATTCCTGTTATTTA--TCTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
* * * * *
2983753 CTCGGGGCACGCTGAGGTATTTTCAATTACTGTTTGGCAAA
190 CTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAA
* * * ** *
2983794 AACCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTATTTTC
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACCGAGGTATTTTC
2983850 CATTTCTGTT
Statistics
Matches: 447, Mismatches: 47, Indels: 38
0.84 0.09 0.07
Matches are distributed among these distances:
219 60 0.13
220 7 0.02
221 1 0.00
222 57 0.13
229 5 0.01
230 37 0.08
231 126 0.28
232 83 0.19
233 63 0.14
234 8 0.02
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (230 bp):
AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACCGAGGTATTTTCAAATTCTAC
TTTTCAAGAAAATCAACTCATATTGCAAAAGGTGAGTTGAGCCTCAAGACACGTTGAGGTACTTT
CAATTCCTGTTATTTATCTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
ACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAA
Found at i:2984838 original size:22 final size:22
Alignment explanation
Indices: 2984809--2984871 Score: 99
Period size: 22 Copynumber: 2.9 Consensus size: 22
2984799 GCAACCATGA
2984809 AGCAGCCCCATACCTCCACTAC
1 AGCAGCCCCATACCTCCACTAC
* *
2984831 AGCGGCCCCATACCCCCACTAC
1 AGCAGCCCCATACCTCCACTAC
*
2984853 AGCAGTCCCATACCTCCAC
1 AGCAGCCCCATACCTCCAC
2984872 AGCCCTCGTA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.25, C:0.51, G:0.11, T:0.13
Consensus pattern (22 bp):
AGCAGCCCCATACCTCCACTAC
Found at i:2990910 original size:6 final size:6
Alignment explanation
Indices: 2990899--2990927 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
2990889 TTTATTTGAG
2990899 TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
2990928 TGGCTATTGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTTA
Found at i:2990912 original size:18 final size:18
Alignment explanation
Indices: 2990889--2990927 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
2990879 TCTACTATAA
2990889 TTTA-TTTGAGTTTTTATT
1 TTTATTTTGA-TTTTTATT
*
2990907 TTTATTTTTATTTTTATT
1 TTTATTTTGATTTTTATT
2990925 TTT
1 TTT
2990928 TGGCTATTGC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.15, C:0.00, G:0.05, T:0.79
Consensus pattern (18 bp):
TTTATTTTGATTTTTATT
Found at i:2991090 original size:29 final size:30
Alignment explanation
Indices: 2991027--2991090 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 30
2991017 ATTTCAAAAC
2991027 TATACATAAACTTTAATTTAATATACAATTG
1 TATACATAAACTTTAATTT-ATATACAATTG
* * *
2991058 TATACATGAACTTTGATTT-TATACAATTT
1 TATACATAAACTTTAATTTATATACAATTG
2991087 TATA
1 TATA
2991091 TATCAAATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
29 13 0.43
31 17 0.57
ACGTcount: A:0.41, C:0.09, G:0.05, T:0.45
Consensus pattern (30 bp):
TATACATAAACTTTAATTTATATACAATTG
Found at i:2991969 original size:32 final size:32
Alignment explanation
Indices: 2991933--2991999 Score: 125
Period size: 32 Copynumber: 2.1 Consensus size: 32
2991923 TGGGTTGGGT
2991933 TTAGATAAAGAGGTTTCATTCATGGTCCAATC
1 TTAGATAAAGAGGTTTCATTCATGGTCCAATC
*
2991965 TTAGATAAAGAGGTTTTATTCATGGTCCAATC
1 TTAGATAAAGAGGTTTCATTCATGGTCCAATC
2991997 TTA
1 TTA
2992000 CTCGAACGTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.37
Consensus pattern (32 bp):
TTAGATAAAGAGGTTTCATTCATGGTCCAATC
Found at i:2993064 original size:20 final size:20
Alignment explanation
Indices: 2993041--2993082 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
2993031 TGCTGATGAG
*
2993041 TTTTATATAA-ATTATTTTTA
1 TTTT-TATAACATTAATTTTA
*
2993061 TTTTTTTAACATTAATTTTA
1 TTTTTATAACATTAATTTTA
2993081 TT
1 TT
2993083 ATAGATTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (20 bp):
TTTTTATAACATTAATTTTA
Found at i:2994019 original size:21 final size:20
Alignment explanation
Indices: 2993977--2994020 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 20
2993967 TTTATTCGTG
*
2993977 AAATAATTTTTATAATTTTT
1 AAATAATTTTTATAATTATT
2993997 AAATATATTTTTATTAA-TATT
1 AAATA-ATTTTTA-TAATTATT
2994018 AAA
1 AAA
2994021 CATCAATTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 5 0.24
21 13 0.62
22 3 0.14
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
AAATAATTTTTATAATTATT
Found at i:2994138 original size:42 final size:42
Alignment explanation
Indices: 2994079--2994162 Score: 141
Period size: 42 Copynumber: 2.0 Consensus size: 42
2994069 GTTAAATAGT
* *
2994079 GATTAAATTAAAGAAATAAAAATAGTAATTAAATACAAATGA
1 GATTAAATTAAAGAAATAAAAATACTAATTAAACACAAATGA
*
2994121 GATTAAATTAAAGAAATATAAATACTAATTAAACACAAATGA
1 GATTAAATTAAAGAAATAAAAATACTAATTAAACACAAATGA
2994163 CCAAGTTTGA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.61, C:0.05, G:0.08, T:0.26
Consensus pattern (42 bp):
GATTAAATTAAAGAAATAAAAATACTAATTAAACACAAATGA
Found at i:2994150 original size:21 final size:20
Alignment explanation
Indices: 2994084--2994153 Score: 54
Period size: 21 Copynumber: 3.4 Consensus size: 20
2994074 ATAGTGATTA
*
2994084 AATTAAAGAAATAAAAATAGT
1 AATTAAAGAAATATAAATA-T
* *
2994105 AATTAAATACAA-ATGAGAT-T
1 AATTAAAGA-AATAT-AAATAT
2994125 AAATTAAAGAAATATAAATACT
1 -AATTAAAGAAATATAAATA-T
2994147 AATTAAA
1 AATTAAA
2994154 CACAAATGAC
Statistics
Matches: 38, Mismatches: 5, Indels: 12
0.69 0.09 0.22
Matches are distributed among these distances:
20 6 0.16
21 26 0.68
22 6 0.16
ACGTcount: A:0.63, C:0.03, G:0.07, T:0.27
Consensus pattern (20 bp):
AATTAAAGAAATATAAATAT
Found at i:2996729 original size:27 final size:28
Alignment explanation
Indices: 2996680--2996735 Score: 96
Period size: 27 Copynumber: 2.0 Consensus size: 28
2996670 AATTTTGAAG
*
2996680 ATTATTTTGGTTTTTTTTGAAAGGGGAC
1 ATTATTTTGGATTTTTTTGAAAGGGGAC
2996708 ATTATTTT-GATTTTTTTGAAAGGGGAC
1 ATTATTTTGGATTTTTTTGAAAGGGGAC
2996735 A
1 A
2996736 CTTTGCAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
27 19 0.70
28 8 0.30
ACGTcount: A:0.25, C:0.04, G:0.23, T:0.48
Consensus pattern (28 bp):
ATTATTTTGGATTTTTTTGAAAGGGGAC
Found at i:2996746 original size:26 final size:27
Alignment explanation
Indices: 2996691--2996749 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
2996681 TTATTTTGGT
* ***
2996691 TTTTTTTGAAAGGGGACATTATTTTGA
1 TTTTTTTGAAAGGGGACACTATTGCAA
2996718 TTTTTTTGAAAGGGGACACT-TTGCAA
1 TTTTTTTGAAAGGGGACACTATTGCAA
2996744 TTTTTT
1 TTTTTT
2996750 GAACTATCAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 9 0.32
27 19 0.68
ACGTcount: A:0.24, C:0.07, G:0.20, T:0.49
Consensus pattern (27 bp):
TTTTTTTGAAAGGGGACACTATTGCAA
Found at i:2998471 original size:3 final size:3
Alignment explanation
Indices: 2998463--2998500 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
2998453 TTCATCAACC
2998463 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
2998501 CATTGATTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:3005242 original size:36 final size:36
Alignment explanation
Indices: 3005173--3005242 Score: 106
Period size: 35 Copynumber: 1.9 Consensus size: 36
3005163 TATTTCAAAG
*
3005173 GAGGGGAAAACAGATTGTATTTTGGATGAGGGATTT
1 GAGGGGAAAACAGATTGTATTTTGAATGAGGGATTT
*
3005209 GAGGGG-AAACAGATTGTATTTTGAAATGGGGGAT
1 GAGGGGAAAACAGATTGTATTTTG-AATGAGGGAT
3005243 CGATTGTATT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
35 17 0.55
36 14 0.45
ACGTcount: A:0.31, C:0.03, G:0.37, T:0.29
Consensus pattern (36 bp):
GAGGGGAAAACAGATTGTATTTTGAATGAGGGATTT
Found at i:3012024 original size:32 final size:31
Alignment explanation
Indices: 3011967--3012034 Score: 91
Period size: 32 Copynumber: 2.2 Consensus size: 31
3011957 TAACAAGTTC
* *
3011967 AATTAATTAGTATAAGTTATCAAATTGAATT
1 AATTAATTAATATAAGTTATCAAATTGAAGT
* *
3011998 AATTAATTAATAATAAGTTATTAAATTTAAGT
1 AATTAATTAAT-ATAAGTTATCAAATTGAAGT
3012030 AATTA
1 AATTA
3012035 GTTTTTAAGT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
31 10 0.31
32 22 0.69
ACGTcount: A:0.49, C:0.01, G:0.07, T:0.43
Consensus pattern (31 bp):
AATTAATTAATATAAGTTATCAAATTGAAGT
Found at i:3012037 original size:21 final size:20
Alignment explanation
Indices: 3012004--3012047 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
3011994 AATTAATTAA
3012004 TTAATAATAAGTTATTAAAT
1 TTAATAATAAGTTATTAAAT
* * *
3012024 TTAAGTAATTAGTTTTTAAGT
1 TTAA-TAATAAGTTATTAAAT
3012045 TTA
1 TTA
3012048 TAAGGTTCCA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.41, C:0.00, G:0.09, T:0.50
Consensus pattern (20 bp):
TTAATAATAAGTTATTAAAT
Found at i:3020541 original size:4 final size:4
Alignment explanation
Indices: 3020532--3020569 Score: 76
Period size: 4 Copynumber: 9.5 Consensus size: 4
3020522 TCGTGATATT
3020532 TATG TATG TATG TATG TATG TATG TATG TATG TATG TA
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TA
3020570 GAGTTACCTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 34 1.00
ACGTcount: A:0.26, C:0.00, G:0.24, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:3021309 original size:21 final size:20
Alignment explanation
Indices: 3021281--3021319 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
3021271 TGCCATCCTC
* *
3021281 TAAAATGGGTCAAGTTTTCT
1 TAAAATGGGCCAAATTTTCT
3021301 TAAATATGGGCCAAATTTT
1 TAAA-ATGGGCCAAATTTT
3021320 GTTATTGCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.38
Consensus pattern (20 bp):
TAAAATGGGCCAAATTTTCT
Found at i:3025794 original size:20 final size:20
Alignment explanation
Indices: 3025771--3025817 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
3025761 GGGTTAAGAT
*
3025771 TGAGCTGAATTGAGCTTGAG
1 TGAGCTGAATTGAGCTCGAG
* *
3025791 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAG
3025811 TGAGCTG
1 TGAGCTG
3025818 GAAACGAGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.21, C:0.13, G:0.36, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAG
Found at i:3030366 original size:16 final size:17
Alignment explanation
Indices: 3030333--3030366 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
3030323 TTATTCTCTT
*
3030333 TTCTTTTATCTCTTCTC
1 TTCTTTTATCTATTCTC
3030350 TTCTTTT-TCTATTCTC
1 TTCTTTTATCTATTCTC
3030366 T
1 T
3030367 GTTCTTTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.06, C:0.26, G:0.00, T:0.68
Consensus pattern (17 bp):
TTCTTTTATCTATTCTC
Found at i:3030371 original size:23 final size:24
Alignment explanation
Indices: 3030326--3030371 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
3030316 TTATTCATTA
*
3030326 TTCTCTTTTCTTTTATCTCTTCTC
1 TTCTCTTTTCTATTATCTCTTCTC
* *
3030350 TTCT-TTTTCTATTCTCTGTTCT
1 TTCTCTTTTCTATTATCTCTTCT
3030372 TTAATATTCT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 15 0.79
24 4 0.21
ACGTcount: A:0.04, C:0.26, G:0.02, T:0.67
Consensus pattern (24 bp):
TTCTCTTTTCTATTATCTCTTCTC
Found at i:3058315 original size:14 final size:15
Alignment explanation
Indices: 3058291--3058331 Score: 57
Period size: 14 Copynumber: 2.7 Consensus size: 15
3058281 CATGCAAGTT
*
3058291 TAAAAACTAAATAGA
1 TAAAAACTAAATAAA
3058306 TAAAAA-TAAATAAA
1 TAAAAACTAAATAAA
3058320 TAAATAACTAAA
1 TAAA-AACTAAA
3058332 ATATATATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 11 0.48
15 8 0.35
16 4 0.17
ACGTcount: A:0.71, C:0.05, G:0.02, T:0.22
Consensus pattern (15 bp):
TAAAAACTAAATAAA
Found at i:3060198 original size:28 final size:28
Alignment explanation
Indices: 3060167--3060236 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
3060157 ATATTTTCCT
*
3060167 TCGCACACTTAGTGCTCGA-TAATCAAAC
1 TCGCACACTTAGTGCTC-ATTAACCAAAC
3060195 TCGCACACTTAGTGCTCATTAACCAAAC
1 TCGCACACTTAGTGCTCATTAACCAAAC
**
3060223 TCGCATGCTTAGTG
1 TCGCACACTTAGTG
3060237 AAATTTTCAT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
27 1 0.03
28 37 0.97
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (28 bp):
TCGCACACTTAGTGCTCATTAACCAAAC
Found at i:3091361 original size:25 final size:25
Alignment explanation
Indices: 3091340--3091393 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
3091330 TTTTTTTGTT
3091340 TATATATTAGGGTTAATATTTTTAA
1 TATATATTAGGGTTAATATTTTTAA
*
3091365 TATTTATTAGGGTTAATA--TTTAA
1 TATATATTAGGGTTAATATTTTTAA
3091388 TATATA
1 TATATA
3091394 ATATTACTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
23 10 0.37
25 17 0.63
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.52
Consensus pattern (25 bp):
TATATATTAGGGTTAATATTTTTAA
Found at i:3092303 original size:25 final size:24
Alignment explanation
Indices: 3092246--3092301 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
3092236 CTCACAAAAG
*
3092246 ATTTATTT-TTGTTATAATTATTT
1 ATTTATTTATTGTAATAATTATTT
*
3092269 ATTCAGTTTATTGTAATGAATTA-TT
1 ATTTA-TTTATTGTAAT-AATTATTT
3092294 ATTTATTT
1 ATTTATTT
3092302 TAACCAAAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
23 4 0.15
24 6 0.22
25 12 0.44
26 5 0.19
ACGTcount: A:0.29, C:0.02, G:0.07, T:0.62
Consensus pattern (24 bp):
ATTTATTTATTGTAATAATTATTT
Found at i:3095599 original size:23 final size:23
Alignment explanation
Indices: 3095573--3095617 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
3095563 GTTTAATTTC
3095573 TTAAAAAATGATGAAA-TTATAAA
1 TTAAAAAATGAT-AAACTTATAAA
* *
3095596 TTAATACATGATAAACTTATAA
1 TTAAAAAATGATAAACTTATAA
3095618 TTTTTATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 3 0.16
23 16 0.84
ACGTcount: A:0.56, C:0.04, G:0.07, T:0.33
Consensus pattern (23 bp):
TTAAAAAATGATAAACTTATAAA
Found at i:3096425 original size:16 final size:16
Alignment explanation
Indices: 3096404--3096434 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
3096394 TTACTGAAAC
*
3096404 GGAATAGAGTTGTAAA
1 GGAATAGAATTGTAAA
3096420 GGAATAGAATTGTAA
1 GGAATAGAATTGTAA
3096435 TAGATGTTGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.00, G:0.29, T:0.26
Consensus pattern (16 bp):
GGAATAGAATTGTAAA
Found at i:3099402 original size:13 final size:13
Alignment explanation
Indices: 3099384--3099408 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3099374 ACAGAGAAAA
3099384 ATAAATTAATTCG
1 ATAAATTAATTCG
3099397 ATAAATTAATTC
1 ATAAATTAATTC
3099409 ATTTTACCGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.04, T:0.40
Consensus pattern (13 bp):
ATAAATTAATTCG
Found at i:3100605 original size:8 final size:8
Alignment explanation
Indices: 3100592--3100618 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
3100582 TTCATGATTT
3100592 TTTTTTTA
1 TTTTTTTA
3100600 TTTTTTTA
1 TTTTTTTA
3100608 TTTTTTTA
1 TTTTTTTA
3100616 TTT
1 TTT
3100619 AAAGTGAGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (8 bp):
TTTTTTTA
Found at i:3103392 original size:23 final size:21
Alignment explanation
Indices: 3103354--3103400 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 21
3103344 TAAGTCCAAC
3103354 TAAAAATACTAAAAATTAAAGAA
1 TAAAAATACTAAAAA-TAAA-AA
3103377 TAAAAAT-CTAAGAAATAAAAA
1 TAAAAATACTAA-AAATAAAAA
3103398 TAA
1 TAA
3103401 TGTAAAATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 5 0.22
22 8 0.35
23 10 0.43
ACGTcount: A:0.70, C:0.04, G:0.04, T:0.21
Consensus pattern (21 bp):
TAAAAATACTAAAAATAAAAA
Found at i:3106203 original size:24 final size:24
Alignment explanation
Indices: 3106172--3106220 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
3106162 GTGAACAAAA
3106172 TTAGTAGGAGATAGTTGTTGTATT
1 TTAGTAGGAGATAGTTGTTGTATT
3106196 TTAGTAGGAGATAGTTGTTGTATT
1 TTAGTAGGAGATAGTTGTTGTATT
3106220 T
1 T
3106221 CGTCAGCCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.29, T:0.47
Consensus pattern (24 bp):
TTAGTAGGAGATAGTTGTTGTATT
Found at i:3121322 original size:17 final size:18
Alignment explanation
Indices: 3121300--3121340 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
3121290 AATTGCTCGG
3121300 AATTGATAA-AAAACAAA-
1 AATTGATAACAAAA-AAAT
3121317 AATTGA-AACAAAAAAAT
1 AATTGATAACAAAAAAAT
3121334 AATTGAT
1 AATTGAT
3121341 TTAGTTCAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.24
17 16 0.76
ACGTcount: A:0.66, C:0.05, G:0.07, T:0.22
Consensus pattern (18 bp):
AATTGATAACAAAAAAAT
Found at i:3122899 original size:51 final size:51
Alignment explanation
Indices: 3122818--3122934 Score: 184
Period size: 51 Copynumber: 2.3 Consensus size: 51
3122808 CAGATCACAT
3122818 TTATCACTTGTCACTTGTCACTGATCAGATAAGTATAGCT-A-AAGCTACCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGTATAGCTGAGAA--TACCAC
* *
3122869 TTATCACTTGTCACTTGTCACTGATTAGATAAGTGTAGCTGAGAATACCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGTATAGCTGAGAATACCAC
3122920 TTATCACTTGTCACT
1 TTATCACTTGTCACT
3122935 GATCAGAAGT
Statistics
Matches: 62, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
51 59 0.95
52 1 0.02
53 2 0.03
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.34
Consensus pattern (51 bp):
TTATCACTTGTCACTTGTCACTGATCAGATAAGTATAGCTGAGAATACCAC
Found at i:3125459 original size:11 final size:11
Alignment explanation
Indices: 3125443--3125477 Score: 70
Period size: 11 Copynumber: 3.2 Consensus size: 11
3125433 GCATTAACTT
3125443 TTCCATCAATG
1 TTCCATCAATG
3125454 TTCCATCAATG
1 TTCCATCAATG
3125465 TTCCATCAATG
1 TTCCATCAATG
3125476 TT
1 TT
3125478 GGGATGATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.09, T:0.40
Consensus pattern (11 bp):
TTCCATCAATG
Found at i:3132313 original size:21 final size:21
Alignment explanation
Indices: 3132287--3132327 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
3132277 AGACGAGCAA
* *
3132287 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
3132308 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
3132328 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:3135901 original size:14 final size:16
Alignment explanation
Indices: 3135882--3135918 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
3135872 GCATAATAAC
3135882 TTAAA-TAAA-AATTT
1 TTAAATTAAACAATTT
3135896 TTAAATTAAACAATTT
1 TTAAATTAAACAATTT
*
3135912 TTTAATT
1 TTAAATT
3135919 TTTTAAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 5 0.25
15 4 0.20
16 11 0.55
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (16 bp):
TTAAATTAAACAATTT
Found at i:3136227 original size:16 final size:16
Alignment explanation
Indices: 3136193--3136226 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
3136183 AAAAAAGGCA
*
3136193 TTATATCAGATTAATT
1 TTATATCAAATTAATT
3136209 TTATCATCAAATTAATT
1 TTAT-ATCAAATTAATT
3136226 T
1 T
3136227 ACTTTATGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.38, C:0.09, G:0.03, T:0.50
Consensus pattern (16 bp):
TTATATCAAATTAATT
Found at i:3140306 original size:31 final size:34
Alignment explanation
Indices: 3140271--3140343 Score: 82
Period size: 36 Copynumber: 2.2 Consensus size: 34
3140261 ATGAATCAAC
3140271 GTTAAT-TT-GTTCATGTAA-CAAAAGA-AAAAGA
1 GTTAATATTGGTTCATGTAACCAAAA-ACAAAAGA
*
3140302 GTTAATTAATTGGTTCATGTAACCAAAAACAAAATA
1 GTTAA-T-ATTGGTTCATGTAACCAAAAACAAAAGA
3140338 GTTAAT
1 GTTAAT
3140344 GGTTTCAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
31 5 0.14
32 1 0.03
34 2 0.06
35 12 0.34
36 15 0.43
ACGTcount: A:0.47, C:0.08, G:0.14, T:0.32
Consensus pattern (34 bp):
GTTAATATTGGTTCATGTAACCAAAAACAAAAGA
Found at i:3140318 original size:35 final size:36
Alignment explanation
Indices: 3140272--3140343 Score: 103
Period size: 35 Copynumber: 2.0 Consensus size: 36
3140262 TGAATCAACG
*
3140272 TTAATTTGTTCATGTAA-CAAAAGA-AAAAGAGTTAA
1 TTAATTGGTTCATGTAACCAAAA-ACAAAAGAGTTAA
*
3140307 TTAATTGGTTCATGTAACCAAAAACAAAATAGTTAA
1 TTAATTGGTTCATGTAACCAAAAACAAAAGAGTTAA
3140343 T
1 T
3140344 GGTTTCAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
35 17 0.52
36 16 0.48
ACGTcount: A:0.47, C:0.08, G:0.12, T:0.32
Consensus pattern (36 bp):
TTAATTGGTTCATGTAACCAAAAACAAAAGAGTTAA
Found at i:3141920 original size:15 final size:16
Alignment explanation
Indices: 3141900--3141929 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
3141890 ATATTTTAGC
3141900 AAAGAATAA-AATTGA
1 AAAGAATAAGAATTGA
3141915 AAAGAATAAGAATTG
1 AAAGAATAAGAATTG
3141930 TCTAGAATGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.63, C:0.00, G:0.17, T:0.20
Consensus pattern (16 bp):
AAAGAATAAGAATTGA
Found at i:3148864 original size:11 final size:11
Alignment explanation
Indices: 3148848--3148872 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
3148838 ATATCTAGAA
3148848 TTCTCTTCATT
1 TTCTCTTCATT
3148859 TTCTCTTCATT
1 TTCTCTTCATT
3148870 TTC
1 TTC
3148873 ATCAGCTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.28, G:0.00, T:0.64
Consensus pattern (11 bp):
TTCTCTTCATT
Found at i:3149182 original size:18 final size:19
Alignment explanation
Indices: 3149159--3149197 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
3149149 TGGAATTATG
*
3149159 AATTGAAATGTGA-ATTGA
1 AATTGAAATATGAGATTGA
*
3149177 AATTGAGATATGAGATTGA
1 AATTGAAATATGAGATTGA
3149196 AA
1 AA
3149198 GCTTGAACCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.46, C:0.00, G:0.23, T:0.31
Consensus pattern (19 bp):
AATTGAAATATGAGATTGA
Found at i:3150271 original size:11 final size:11
Alignment explanation
Indices: 3150255--3150280 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
3150245 TTTCAGCTGA
3150255 AGAAAATGAAG
1 AGAAAATGAAG
3150266 AGAAAATGAAG
1 AGAAAATGAAG
3150277 AGAA
1 AGAA
3150281 TTCTAGATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.65, C:0.00, G:0.27, T:0.08
Consensus pattern (11 bp):
AGAAAATGAAG
Found at i:3151323 original size:21 final size:21
Alignment explanation
Indices: 3151286--3151381 Score: 120
Period size: 21 Copynumber: 4.5 Consensus size: 21
3151276 AGGCGCTTTA
3151286 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTA--TCAGGCACCTCG
*
3151309 CGTGTCGTATCAGGCACCTCG
1 TGTGTCGTATCAGGCACCTCG
3151330 TGTGTCGTATCAGGCACCTCG
1 TGTGTCGTATCAGGCACCTCG
* * * **
3151351 TGTGTCGTTTTAGGCACTTTA
1 TGTGTCGTATCAGGCACCTCG
3151372 TGTGTCGTAT
1 TGTGTCGTAT
3151382 ACTGATCAGG
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
21 57 0.88
23 8 0.12
ACGTcount: A:0.14, C:0.24, G:0.27, T:0.35
Consensus pattern (21 bp):
TGTGTCGTATCAGGCACCTCG
Found at i:3156890 original size:30 final size:31
Alignment explanation
Indices: 3156820--3156883 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
3156810 TTTTAATTAG
* *
3156820 AAAA-AATAAAATTATATTTTTATCTCTCTA
1 AAAATAATAAAATTATAATTTAATCTCTCTA
* *
3156850 AAAATAATAAAATTTTAATTTAATCT-TTTA
1 AAAATAATAAAATTATAATTTAATCTCTCTA
3156880 AAAA
1 AAAA
3156884 CTATAAAGAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 11 0.38
31 18 0.62
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (31 bp):
AAAATAATAAAATTATAATTTAATCTCTCTA
Found at i:3158300 original size:2 final size:2
Alignment explanation
Indices: 3158293--3158317 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
3158283 CACATGCTTT
3158293 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
3158318 TTTCTAGATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:3158411 original size:16 final size:17
Alignment explanation
Indices: 3158388--3158422 Score: 56
Period size: 15 Copynumber: 2.2 Consensus size: 17
3158378 CCATGAAATA
3158388 AATTTTTTTT-ATAA-G
1 AATTTTTTTTAATAATG
3158403 AATTTTTTTTAATAATG
1 AATTTTTTTTAATAATG
3158420 AAT
1 AAT
3158423 CAATATCAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 10 0.56
16 4 0.22
17 4 0.22
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (17 bp):
AATTTTTTTTAATAATG
Found at i:3159922 original size:48 final size:48
Alignment explanation
Indices: 3159843--3159936 Score: 138
Period size: 48 Copynumber: 2.0 Consensus size: 48
3159833 AGGGAATTCC
* *
3159843 GTTGAATCCTTTATTGTTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
1 GTTGAATCCATTATTGGTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
3159891 GTTGAATCCATTATTGGTG-GAAGTT-AGGCTGACTTAGGCGTTTTTA
1 GTTGAATCCATTATTGGTGCG-AGTTGA-GCTGACTTAGGCGTTTTTA
3159937 AGCTAAGAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
47 2 0.05
48 40 0.95
ACGTcount: A:0.19, C:0.13, G:0.28, T:0.40
Consensus pattern (48 bp):
GTTGAATCCATTATTGGTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
Found at i:3162438 original size:48 final size:48
Alignment explanation
Indices: 3162359--3162452 Score: 138
Period size: 48 Copynumber: 2.0 Consensus size: 48
3162349 AGGGAATTCT
* *
3162359 GTTGAATCCTTTATTGTTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
1 GTTGAATCCATTATTGGTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
3162407 GTTGAATCCATTATTGGTG-GAAGTT-AGGCTGACTTAGGCGTTTTTA
1 GTTGAATCCATTATTGGTGCG-AGTTGA-GCTGACTTAGGCGTTTTTA
3162453 AGCCAAGAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
47 2 0.05
48 40 0.95
ACGTcount: A:0.19, C:0.13, G:0.28, T:0.40
Consensus pattern (48 bp):
GTTGAATCCATTATTGGTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
Found at i:3168871 original size:28 final size:28
Alignment explanation
Indices: 3168831--3168886 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
3168821 CCTACTTTGC
3168831 ACTTGTTTTTGTTTGTGCATCTTCCTAG
1 ACTTGTTTTTGTTTGTGCATCTTCCTAG
3168859 ACTTGTTTTTGTTTGTGCATCTTCCTAG
1 ACTTGTTTTTGTTTGTGCATCTTCCTAG
3168887 CAATTTGCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.11, C:0.18, G:0.18, T:0.54
Consensus pattern (28 bp):
ACTTGTTTTTGTTTGTGCATCTTCCTAG
Found at i:3168893 original size:24 final size:26
Alignment explanation
Indices: 3168838--3168893 Score: 62
Period size: 28 Copynumber: 2.2 Consensus size: 26
3168828 TGCACTTGTT
**
3168838 TTTGTTTGTGCATCTTCCTAGACTTGTT
1 TTTGTTTGTGCATCTTCCTAGAC-T-AA
3168866 TTTGTTTGTGCATCTTCCTAG-C-AA
1 TTTGTTTGTGCATCTTCCTAGACTAA
3168890 TTTG
1 TTTG
3168894 CTTTTTTTGG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 4 0.15
27 1 0.04
28 21 0.81
ACGTcount: A:0.12, C:0.18, G:0.18, T:0.52
Consensus pattern (26 bp):
TTTGTTTGTGCATCTTCCTAGACTAA
Found at i:3175259 original size:13 final size:13
Alignment explanation
Indices: 3175241--3175291 Score: 59
Period size: 13 Copynumber: 3.7 Consensus size: 13
3175231 AATAGGAAGA
3175241 TATTATTT-TGTTT
1 TATTATTTAT-TTT
3175254 TATTATTTATTTT
1 TATTATTTATTTT
3175267 TATTTTATTTATTTT
1 TA--TTATTTATTTT
3175282 TATTAATTTA
1 TATT-ATTTA
3175292 GGTTAGACTA
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
13 15 0.44
14 6 0.18
15 13 0.38
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.75
Consensus pattern (13 bp):
TATTATTTATTTT
Found at i:3175276 original size:15 final size:15
Alignment explanation
Indices: 3175256--3175285 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
3175246 TTTTGTTTTA
3175256 TTATTTATTTTTATT
1 TTATTTATTTTTATT
3175271 TTATTTATTTTTATT
1 TTATTTATTTTTATT
3175286 AATTTAGGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (15 bp):
TTATTTATTTTTATT
Found at i:3177467 original size:24 final size:24
Alignment explanation
Indices: 3177440--3177486 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
3177430 TATACTTCAT
3177440 CTCTTTCCCTTCACTTTCTCATTA
1 CTCTTTCCCTTCACTTTCTCATTA
* * *
3177464 CTCTTTTCCTTCTCTTTTTCATT
1 CTCTTTCCCTTCACTTTCTCATT
3177487 TGTTTTCTCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.09, C:0.34, G:0.00, T:0.57
Consensus pattern (24 bp):
CTCTTTCCCTTCACTTTCTCATTA
Found at i:3178272 original size:30 final size:31
Alignment explanation
Indices: 3178174--3178272 Score: 85
Period size: 31 Copynumber: 3.2 Consensus size: 31
3178164 GGGGCTAACT
* * *
3178174 AAAATTTTTAAAAACTTT-ATAGGTTTTAGTG
1 AAAATTTTCAAAAATTTTGGTAGGTTTTA-TG
* * * *
3178205 AGAATTTTCAAAAATTTTGGTAGGTCTAATT
1 AAAATTTTCAAAAATTTTGGTAGGTTTTATG
* * *
3178236 ACAATTTTCAAAATTTTTTG-AGGTTTTATG
1 AAAATTTTCAAAAATTTTGGTAGGTTTTATG
3178266 AAAATTT
1 AAAATTT
3178273 ATAAAAAAAA
Statistics
Matches: 53, Mismatches: 14, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
30 13 0.25
31 33 0.62
32 7 0.13
ACGTcount: A:0.36, C:0.05, G:0.13, T:0.45
Consensus pattern (31 bp):
AAAATTTTCAAAAATTTTGGTAGGTTTTATG
Found at i:3178842 original size:9 final size:9
Alignment explanation
Indices: 3178824--3178864 Score: 55
Period size: 9 Copynumber: 4.6 Consensus size: 9
3178814 ATAAGTATAA
3178824 AATTAACCG
1 AATTAACCG
*
3178833 AATTACCCG
1 AATTAACCG
* *
3178842 AATTACCCA
1 AATTAACCG
3178851 AATTAACCG
1 AATTAACCG
3178860 AATTA
1 AATTA
3178865 TTTGTATAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.44, C:0.24, G:0.07, T:0.24
Consensus pattern (9 bp):
AATTAACCG
Found at i:3191247 original size:67 final size:67
Alignment explanation
Indices: 3191119--3191250 Score: 164
Period size: 66 Copynumber: 2.0 Consensus size: 67
3191109 TTTTTAAAAA
* **
3191119 TTTTGAAGGTTTTAATGAGAATTTTCAAACAATTTTGTATGTTTAACTAAAACTTTCAAAAAATG
1 TTTTGAAGGTTTTAATGAGAATTTTCAAACAATTTTGTAGGGCTAACTAAAACTTTCAAAAAATG
3191184 TT
66 TT
* *
3191186 TTTTGAAAGG-TTTAATGAGAA-TTTCAAA-AATTTTG-AGCGGGCTAATTAAAATTTTCAAAAA
1 TTTTG-AAGGTTTTAATGAGAATTTTCAAACAATTTTGTA--GGGCTAACTAAAACTTTCAAAAA
3191247 ATGT
63 ATGT
3191251 ATAATAAAAA
Statistics
Matches: 57, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
64 1 0.02
65 7 0.12
66 29 0.51
67 16 0.28
68 4 0.07
ACGTcount: A:0.39, C:0.07, G:0.14, T:0.40
Consensus pattern (67 bp):
TTTTGAAGGTTTTAATGAGAATTTTCAAACAATTTTGTAGGGCTAACTAAAACTTTCAAAAAATG
TT
Found at i:3212825 original size:30 final size:31
Alignment explanation
Indices: 3212763--3212835 Score: 139
Period size: 31 Copynumber: 2.4 Consensus size: 31
3212753 CTATAATTTC
3212763 TTTCATTTTTAAGGGATTAAAAATATTTTTT
1 TTTCATTTTTAAGGGATTAAAAATATTTTTT
3212794 TTTCATTTTTAAGGGATTAAAAATA-TTTTT
1 TTTCATTTTTAAGGGATTAAAAATATTTTTT
3212824 TTTCATTTTTAA
1 TTTCATTTTTAA
3212836 AAATTAAAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
30 17 0.40
31 25 0.60
ACGTcount: A:0.32, C:0.04, G:0.08, T:0.56
Consensus pattern (31 bp):
TTTCATTTTTAAGGGATTAAAAATATTTTTT
Found at i:3233933 original size:6 final size:6
Alignment explanation
Indices: 3233922--3233973 Score: 79
Period size: 6 Copynumber: 8.7 Consensus size: 6
3233912 TTGTCAAGGC
*
3233922 TGATTT TGATTT TGATTT TGGTTT TCG-TTT TGATTT TGATTT TGATTT
1 TGATTT TGATTT TGATTT TGATTT T-GATTT TGATTT TGATTT TGATTT
3233970 TGAT
1 TGAT
3233974 AGCTGAAAGA
Statistics
Matches: 43, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
5 1 0.02
6 41 0.95
7 1 0.02
ACGTcount: A:0.13, C:0.02, G:0.19, T:0.65
Consensus pattern (6 bp):
TGATTT
Found at i:3235916 original size:13 final size:13
Alignment explanation
Indices: 3235900--3235929 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
3235890 AGTACTTCTG
3235900 AAAAGCGTTATGA
1 AAAAGCGTTATGA
*
3235913 AAAAGTGTTATGA
1 AAAAGCGTTATGA
3235926 AAAA
1 AAAA
3235930 ATATTTTTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.53, C:0.03, G:0.20, T:0.23
Consensus pattern (13 bp):
AAAAGCGTTATGA
Found at i:3235944 original size:13 final size:13
Alignment explanation
Indices: 3235928--3235952 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3235918 TGTTATGAAA
3235928 AAATATTTTTGAG
1 AAATATTTTTGAG
3235941 AAATATTTTTGA
1 AAATATTTTTGA
3235953 AAAGTTTGGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
AAATATTTTTGAG
Found at i:3241594 original size:10 final size:11
Alignment explanation
Indices: 3241566--3241600 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
3241556 TTTTTAATAA
*
3241566 TTTAAAGGTTT
1 TTTAAAGATTT
3241577 TTTAAAGATTT
1 TTTAAAGATTT
3241588 TTT-AAGATTT
1 TTTAAAGATTT
3241598 TTT
1 TTT
3241601 TTTCACAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 10 0.43
11 13 0.57
ACGTcount: A:0.29, C:0.00, G:0.11, T:0.60
Consensus pattern (11 bp):
TTTAAAGATTT
Found at i:3241973 original size:15 final size:17
Alignment explanation
Indices: 3241952--3241992 Score: 52
Period size: 15 Copynumber: 2.5 Consensus size: 17
3241942 AATTATTCAA
3241952 AAAATTATAAAAAT-AT
1 AAAATTATAAAAATAAT
3241968 -AAATTACT-AAAATAAT
1 AAAATTA-TAAAAATAAT
3241984 AAAATTATA
1 AAAATTATA
3241993 TTTTGAGGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 7
0.75 0.00 0.25
Matches are distributed among these distances:
15 11 0.52
16 4 0.19
17 6 0.29
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (17 bp):
AAAATTATAAAAATAAT
Found at i:3242400 original size:15 final size:17
Alignment explanation
Indices: 3242368--3242408 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
3242358 TAATAAAAAT
3242368 ATAATTTTATAGTTTTA
1 ATAATTTTATAGTTTTA
3242385 ATAA-TTTATA-TTTTA
1 ATAATTTTATAGTTTTA
*
3242400 ATATTTTTA
1 ATAATTTTA
3242409 AAAATTTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 8 0.36
16 10 0.45
17 4 0.18
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (17 bp):
ATAATTTTATAGTTTTA
Found at i:3242405 original size:14 final size:15
Alignment explanation
Indices: 3242369--3242405 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
3242359 AATAAAAATA
3242369 TAAT-TTTATAGTTT
1 TAATATTTATAGTTT
3242383 TAATAATTTATA-TTT
1 TAAT-ATTTATAGTTT
3242398 TAATATTT
1 TAATATTT
3242406 TTAAAAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
14 8 0.38
15 7 0.33
16 6 0.29
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (15 bp):
TAATATTTATAGTTT
Found at i:3242408 original size:16 final size:16
Alignment explanation
Indices: 3242371--3242406 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
3242361 TAAAAATATA
3242371 ATTTTATAGTTTTAAT
1 ATTTTATAGTTTTAAT
*
3242387 AATTTATA-TTTTAAT
1 ATTTTATAGTTTTAAT
3242402 ATTTT
1 ATTTT
3242407 TAAAAATTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
15 11 0.61
16 7 0.39
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (16 bp):
ATTTTATAGTTTTAAT
Found at i:3242414 original size:24 final size:22
Alignment explanation
Indices: 3242361--3242417 Score: 69
Period size: 24 Copynumber: 2.5 Consensus size: 22
3242351 TTTATAATAA
*
3242361 TAAAAATATAATTTTATAGTTT
1 TAAAAATTTAATTTTATAGTTT
* *
3242383 TAATAATTTATATTTTAATATTTT
1 TAAAAATTTA-ATTTT-ATAGTTT
3242407 TAAAAATTTAA
1 TAAAAATTTAA
3242418 ATTAAATATT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
22 8 0.28
23 6 0.21
24 15 0.52
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.53
Consensus pattern (22 bp):
TAAAAATTTAATTTTATAGTTT
Found at i:3242425 original size:23 final size:24
Alignment explanation
Indices: 3242380--3242428 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
3242370 AATTTTATAG
* * *
3242380 TTTTAATAATTTATATTTTAATAT
1 TTTTAAAAATTTATAATTAAATAT
3242404 TTTTAAAAATTTA-AATTAAATAT
1 TTTTAAAAATTTATAATTAAATAT
3242427 TT
1 TT
3242429 ATTATTTTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 10 0.45
24 12 0.55
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (24 bp):
TTTTAAAAATTTATAATTAAATAT
Found at i:3242446 original size:29 final size:29
Alignment explanation
Indices: 3242394--3242468 Score: 82
Period size: 30 Copynumber: 2.6 Consensus size: 29
3242384 AATAATTTAT
* * *
3242394 ATTTTAATATTTTTAAAAATTTAAAT-TAA
1 ATTTTATTATTTTTAAAAGTTAAAATAT-A
3242423 ATATTTATTATTTTTAAAAGTTAAAATATA
1 AT-TTTATTATTTTTAAAAGTTAAAATATA
3242453 ATTTTATT-TTTATTAA
1 ATTTTATTATTT-TTAA
3242469 TTTAAAATTT
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
28 3 0.08
29 12 0.30
30 24 0.60
31 1 0.03
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (29 bp):
ATTTTATTATTTTTAAAAGTTAAAATATA
Found at i:3243861 original size:15 final size:15
Alignment explanation
Indices: 3243841--3243897 Score: 80
Period size: 15 Copynumber: 3.8 Consensus size: 15
3243831 TTGGCCAAAA
3243841 ACCGCTGGTTCTGCT
1 ACCGCTGGTTCTGCT
*
3243856 ACCGCTGGTTTTGCT
1 ACCGCTGGTTCTGCT
*
3243871 ATCGCTGGTT-TAGCT
1 ACCGCTGGTTCT-GCT
3243886 ACCGCTGGTTCT
1 ACCGCTGGTTCT
3243898 TCTAATGACC
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
14 1 0.03
15 35 0.95
16 1 0.03
ACGTcount: A:0.09, C:0.28, G:0.26, T:0.37
Consensus pattern (15 bp):
ACCGCTGGTTCTGCT
Found at i:3251424 original size:42 final size:43
Alignment explanation
Indices: 3251365--3251459 Score: 147
Period size: 42 Copynumber: 2.2 Consensus size: 43
3251355 AATGATGATA
* *
3251365 TAAAATTATACAAATATAAATTATTTTA-TTTTATATATCTTT
1 TAAAATTAAAAAAATATAAATTATTTTATTTTTATATATCTTT
* *
3251407 TAAAATTAAAAAAATATAAATTATTTTATTTTTGTATGTCTTT
1 TAAAATTAAAAAAATATAAATTATTTTATTTTTATATATCTTT
3251450 TAAAATTAAA
1 TAAAATTAAA
3251460 GGAAACAATC
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
42 26 0.54
43 22 0.46
ACGTcount: A:0.45, C:0.03, G:0.02, T:0.49
Consensus pattern (43 bp):
TAAAATTAAAAAAATATAAATTATTTTATTTTTATATATCTTT
Found at i:3255711 original size:11 final size:11
Alignment explanation
Indices: 3255691--3255720 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
3255681 CTGTGTGTTC
3255691 TTTA-TTTTAT
1 TTTATTTTTAT
3255701 TTTATTTTTAT
1 TTTATTTTTAT
3255712 TTTATTTTT
1 TTTATTTTT
3255721 CACAACTTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.21
11 15 0.79
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (11 bp):
TTTATTTTTAT
Found at i:3262124 original size:6 final size:6
Alignment explanation
Indices: 3262115--3262156 Score: 66
Period size: 6 Copynumber: 6.8 Consensus size: 6
3262105 AAAATTCCAA
*
3262115 TTTTTC TTTTTC TTTTTC TTTTTTC TTTTTC TTTTTA TTTTT
1 TTTTTC TTTTTC TTTTTC -TTTTTC TTTTTC TTTTTC TTTTT
3262157 TGCGGTGGCC
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
6 28 0.82
7 6 0.18
ACGTcount: A:0.02, C:0.12, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTTC
Found at i:3262137 original size:13 final size:13
Alignment explanation
Indices: 3262115--3262150 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
3262105 AAAATTCCAA
3262115 TTTTTC-TTTTTC
1 TTTTTCTTTTTTC
3262127 TTTTTCTTTTTTC
1 TTTTTCTTTTTTC
3262140 TTTTTCTTTTT
1 TTTTTCTTTTT
3262151 ATTTTTTGCG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 6 0.26
13 17 0.74
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (13 bp):
TTTTTCTTTTTTC
Found at i:3262139 original size:19 final size:19
Alignment explanation
Indices: 3262115--3262157 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
3262105 AAAATTCCAA
*
3262115 TTTTTCTTTTTCTTTTTCT
1 TTTTTCTTTTTCTTTTTAT
3262134 TTTTTCTTTTTCTTTTTAT
1 TTTTTCTTTTTCTTTTTAT
3262153 TTTTT
1 TTTTT
3262158 GCGGTGGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.02, C:0.12, G:0.00, T:0.86
Consensus pattern (19 bp):
TTTTTCTTTTTCTTTTTAT
Found at i:3262156 original size:13 final size:12
Alignment explanation
Indices: 3262115--3262157 Score: 59
Period size: 13 Copynumber: 3.4 Consensus size: 12
3262105 AAAATTCCAA
*
3262115 TTTTTCTTTTTC
1 TTTTTCTTTTTT
3262127 TTTTTCTTTTTT
1 TTTTTCTTTTTT
3262139 CTTTTTCTTTTTAT
1 -TTTTTCTTTTT-T
3262153 TTTTT
1 TTTTT
3262158 GCGGTGGCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
12 11 0.39
13 16 0.57
14 1 0.04
ACGTcount: A:0.02, C:0.12, G:0.00, T:0.86
Consensus pattern (12 bp):
TTTTTCTTTTTT
Found at i:3269204 original size:20 final size:20
Alignment explanation
Indices: 3269167--3269206 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
3269157 CTTAATTATT
3269167 AAAATGTAAAAAATTATAAA
1 AAAATGTAAAAAATTATAAA
3269187 AAAAT-TAAAAAATATATAAA
1 AAAATGTAAAAAAT-TATAAA
3269207 GTTTCGCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (20 bp):
AAAATGTAAAAAATTATAAA
Found at i:3272949 original size:42 final size:41
Alignment explanation
Indices: 3272901--3273022 Score: 174
Period size: 42 Copynumber: 2.9 Consensus size: 41
3272891 ACGTCAGAAT
3272901 TCGGTTTGTCCCTT-GAGAGCCTGGGTGATTGAAATGCAGTA
1 TCGGTTTGT-CCTTGGAGAGCCTGGGTGATTGAAATGCAGTA
*
3272942 TCTGGTTTGTCCTTGGAGAGCCTGGGCGATTGAAATGCAGTA
1 TC-GGTTTGTCCTTGGAGAGCCTGGGTGATTGAAATGCAGTA
* * *
3272984 TCGGATTTGTCCTTGGAGAGCCTAGGTGGTTCAAATGCA
1 TCGG-TTTGTCCTTGGAGAGCCTGGGTGATTGAAATGCA
3273023 CCATCAGATT
Statistics
Matches: 73, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
41 8 0.11
42 65 0.89
ACGTcount: A:0.20, C:0.17, G:0.32, T:0.31
Consensus pattern (41 bp):
TCGGTTTGTCCTTGGAGAGCCTGGGTGATTGAAATGCAGTA
Found at i:3279928 original size:30 final size:31
Alignment explanation
Indices: 3279879--3279938 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 31
3279869 AGTCGAAATT
3279879 AAATTAAATTAATATTTTTATAATTTTTAAA
1 AAATTAAATTAATATTTTTATAATTTTTAAA
*
3279910 AAATTAAATTAA-ATTTTTATTATTTTTAA
1 AAATTAAATTAATATTTTTATAATTTTTAA
3279939 GAGGTAAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
30 16 0.57
31 12 0.43
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (31 bp):
AAATTAAATTAATATTTTTATAATTTTTAAA
Found at i:3281031 original size:22 final size:21
Alignment explanation
Indices: 3280998--3281051 Score: 63
Period size: 21 Copynumber: 2.4 Consensus size: 21
3280988 ACTTTATGTT
*
3280998 ATTTTTTATAAACTTTATATATA
1 ATTTTTTA-AAA-TATATATATA
*
3281021 GATTTTTTAAAATATATTTATA
1 -ATTTTTTAAAATATATATATA
3281043 ATTTTTTAA
1 ATTTTTTAA
3281052 TTATTTGTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 9 0.32
22 8 0.29
23 3 0.11
24 8 0.29
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (21 bp):
ATTTTTTAAAATATATATATA
Found at i:3281056 original size:18 final size:20
Alignment explanation
Indices: 3281012--3281057 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
3281002 TTTATAAACT
*
3281012 TTATATATAGATTTTTTAAAA
1 TTATTTATAGATTTTTT-AAA
3281033 TATATTTATA-ATTTTTT-AA
1 T-TATTTATAGATTTTTTAAA
3281052 TTATTT
1 TTATTT
3281058 GTTGATATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
18 5 0.22
19 3 0.13
21 8 0.35
22 7 0.30
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (20 bp):
TTATTTATAGATTTTTTAAA
Found at i:3282279 original size:13 final size:14
Alignment explanation
Indices: 3282261--3282294 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
3282251 AATTTGATTG
3282261 AAAAAAATACAAA-
1 AAAAAAATACAAAC
*
3282274 AAAAAAATAGAAAC
1 AAAAAAATACAAAC
3282288 AAAAAAA
1 AAAAAAA
3282295 ATCCAAAGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.85, C:0.06, G:0.03, T:0.06
Consensus pattern (14 bp):
AAAAAAATACAAAC
Found at i:3286903 original size:84 final size:84
Alignment explanation
Indices: 3286812--3286980 Score: 266
Period size: 84 Copynumber: 2.0 Consensus size: 84
3286802 CTATCTTTTT
* * * * *
3286812 TTCCCTTATTCGCCTCATAAGTTAACAATTATCATTTTTTTAAAAGTTTTTCAGTAAAATATCTT
1 TTCCCTTATTCACCTCACAAGTTAACAAATATCATTTTTCTAAAAGATTTTCAGTAAAATATCTT
*
3286877 TGATTCTGTATGTAAGTGA
66 TGATTCTATATGTAAGTGA
* *
3286896 TTCCCTTATTTACCTCACAGGTTAACAAATATCATTTTTCTAAAAGATTTTCAGTAAAATATCTT
1 TTCCCTTATTCACCTCACAAGTTAACAAATATCATTTTTCTAAAAGATTTTCAGTAAAATATCTT
3286961 TGATTCTATATGTAAGTGA
66 TGATTCTATATGTAAGTGA
3286980 T
1 T
3286981 GGTTAGAATT
Statistics
Matches: 77, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
84 77 1.00
ACGTcount: A:0.31, C:0.15, G:0.10, T:0.44
Consensus pattern (84 bp):
TTCCCTTATTCACCTCACAAGTTAACAAATATCATTTTTCTAAAAGATTTTCAGTAAAATATCTT
TGATTCTATATGTAAGTGA
Found at i:3299425 original size:15 final size:15
Alignment explanation
Indices: 3299405--3299437 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
3299395 AGTAATTAAG
3299405 AAAACTTAGTTCATT
1 AAAACTTAGTTCATT
3299420 AAAACTTAGTTCATT
1 AAAACTTAGTTCATT
3299435 AAA
1 AAA
3299438 TGTAATACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.45, C:0.12, G:0.06, T:0.36
Consensus pattern (15 bp):
AAAACTTAGTTCATT
Found at i:3300454 original size:468 final size:469
Alignment explanation
Indices: 3299569--3300482 Score: 1394
Period size: 468 Copynumber: 1.9 Consensus size: 469
3299559 CTATAACAGA
*
3299569 AATTATATTATAATTTTTAATAGTCTAAATCTTTATAATTTTTAAAAGATTAAATTAAAATTATC
1 AATTATATTATAATTTTTAATAGTCTAAATCTTTATAACTTTTAAAAGATTAAATTAAAATTATC
* * * * **
3299634 ATTTTTATGGAGGGTAAAGTCCAATTTTATTTTTACTAATTTAAAATTTTAAAATTTCTAAAGAA
66 ATTTTTAAGGAGGATAAACTACAATTTTACCTTTACTAATTTAAAATTTTAAAATTTCTAAAGAA
*
3299699 AATAAATGAACAATTTTTACTTGTCCATTTTTTTGCCATGGAATATTATGTTTCTTTTCTCAAAA
131 AATAAATGAACAATTTTTACTTGTCCATTTTTTTGCCATAGAATATTATGTTTCTTTTCTC--AA
* * * *
3299764 AAAAAATGCAAAACATAGAGAAAAAGGGATGTTGCTTTCATATCTACTAAACCTGTTATAGCTAC
194 AAAAAATGCAAAACACAGAGAAAAAGGGATGTTGCTTTCATATCAACTAAACCTGCTATAACTAC
* *
3299829 AGTAGGAAAGAATGAACCAACTAAAAAGTAAAACCAAAGAAATTCTTCCAAAAGAGAAGGTGAGA
259 AGTAGGAAAGAATGAACCAACT---AAG-AAAACCAAAGAAATCCCTCCAAAAGAGAAGGTGAGA
* *
3299894 ATCATTCAATAAAATATTAACAAAATCCAACAATATAAGAATAAAGTCCCTAAAACCTATGACTT
320 ATCATTCAATAAAATATCAACAAAATCCAACAATATAAGAATAAAGTCCCTAAAACCTACGACTT
3299959 TGATTGATGGACCTATGCAACACATTCCACTACACGTGTTGATGGTCAATAGGGGCAAAATTGAA
385 TGATTGATGGACCTATGCAACACATTCCACTACACGTGTTGATGGTCAATAGGGGCAAAATTGAA
3300024 AAAAAAGTTTAGCGAGTCGG
450 AAAAAAGTTTAGCGAGTCGG
*
3300044 AATTATATTATAATTTTTAATAGTCTAAATCTTTATAACTTTTAAGAGATTAAATTAAAAATTTA
1 AATTATATTATAATTTTTAATAGTCTAAATCTTTATAACTTTTAAAAGATTAAATT-AAAA-TTA
3300109 TCATTTTTAAAGG-GGATAAACTACAATTTTACCTTTACTAATTTAAAATTTTAAAATTTCTAAA
64 TCATTTTT-AAGGAGGATAAACTACAATTTTACCTTTACTAATTTAAAATTTTAAAATTTCTAAA
*
3300173 GAAACTAAATGAACAATTTTTACTTGTCCATTTTTTTTTGCCATAGAATATTATGTTTCTTTTCT
128 GAAAATAAATGAACAATTTTTACTTGTCCA--TTTTTTTGCCATAGAATATTATGTTTCTTTTCT
** *
3300238 C-AAAAAAATGCAAAACACAGAGAAAATTGTATGTTGC-TTCATATCAACTAAACCTGCTATAAC
191 CAAAAAAAATGCAAAACACAGAGAAAAAGGGATGTTGCTTTCATATCAACTAAACCTGCTATAAC
* *
3300301 TATAGTAGGAGAGAATGAACCAACT-A-AAAA-CAAAGAAATCCCTCCAAAAGAGAAGGTGAGAA
256 TACAGTAGGAAAGAATGAACCAACTAAGAAAACCAAAGAAATCCCTCCAAAAGAGAAGGTGAGAA
* * * *
3300363 TCATAT-AGTGAAATATCAACAAAA-CCTAATAATGTAAGAATAAAGTCCCTAAAACCTACGACT
321 TCAT-TCAATAAAATATCAACAAAATCC-AACAATATAAGAATAAAGTCCCTAAAACCTACGACT
* *
3300426 TTGATTGATGGACCTATGCGACACATTCCACTACATGTGTTGATGGTCAATAGGGGC
384 TTGATTGATGGACCTATGCAACACATTCCACTACACGTGTTGATGGTCAATAGGGGC
3300483 TATAATGACC
Statistics
Matches: 403, Mismatches: 29, Indels: 21
0.89 0.06 0.05
Matches are distributed among these distances:
467 2 0.00
468 137 0.34
469 5 0.01
471 1 0.00
475 100 0.25
476 36 0.09
477 86 0.21
478 3 0.01
479 33 0.08
ACGTcount: A:0.41, C:0.13, G:0.13, T:0.33
Consensus pattern (469 bp):
AATTATATTATAATTTTTAATAGTCTAAATCTTTATAACTTTTAAAAGATTAAATTAAAATTATC
ATTTTTAAGGAGGATAAACTACAATTTTACCTTTACTAATTTAAAATTTTAAAATTTCTAAAGAA
AATAAATGAACAATTTTTACTTGTCCATTTTTTTGCCATAGAATATTATGTTTCTTTTCTCAAAA
AAAATGCAAAACACAGAGAAAAAGGGATGTTGCTTTCATATCAACTAAACCTGCTATAACTACAG
TAGGAAAGAATGAACCAACTAAGAAAACCAAAGAAATCCCTCCAAAAGAGAAGGTGAGAATCATT
CAATAAAATATCAACAAAATCCAACAATATAAGAATAAAGTCCCTAAAACCTACGACTTTGATTG
ATGGACCTATGCAACACATTCCACTACACGTGTTGATGGTCAATAGGGGCAAAATTGAAAAAAAA
GTTTAGCGAGTCGG
Found at i:3300829 original size:23 final size:23
Alignment explanation
Indices: 3300803--3300847 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
3300793 AAAAAAAACA
3300803 AAAGCA-AAAACATAAAGTAGAAC
1 AAAGCACAAAACA-AAAGTAGAAC
* *
3300826 AAAGGACAAAACAGAAGTAGAA
1 AAAGCACAAAACAAAAGTAGAA
3300848 AATAGAACAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.64, C:0.11, G:0.18, T:0.07
Consensus pattern (23 bp):
AAAGCACAAAACAAAAGTAGAAC
Found at i:3304626 original size:15 final size:15
Alignment explanation
Indices: 3304601--3304638 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
3304591 CATGACAAAA
3304601 ATAAAAA-AGAACATT
1 ATAAAAATAGAA-ATT
3304616 -TAAAAATAGAAATT
1 ATAAAAATAGAAATT
3304630 ATAAAAATA
1 ATAAAAATA
3304639 TATATATGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
14 9 0.43
15 12 0.57
ACGTcount: A:0.68, C:0.03, G:0.05, T:0.24
Consensus pattern (15 bp):
ATAAAAATAGAAATT
Found at i:3306825 original size:48 final size:48
Alignment explanation
Indices: 3306770--3306866 Score: 194
Period size: 48 Copynumber: 2.0 Consensus size: 48
3306760 AGACTATGAG
3306770 CCCAAGTATTATAAGGTCGATGTTAATTATGCAAATAGAAAAAATTTT
1 CCCAAGTATTATAAGGTCGATGTTAATTATGCAAATAGAAAAAATTTT
3306818 CCCAAGTATTATAAGGTCGATGTTAATTATGCAAATAGAAAAAATTTT
1 CCCAAGTATTATAAGGTCGATGTTAATTATGCAAATAGAAAAAATTTT
3306866 C
1 C
3306867 TTACACATAT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.41, C:0.11, G:0.14, T:0.33
Consensus pattern (48 bp):
CCCAAGTATTATAAGGTCGATGTTAATTATGCAAATAGAAAAAATTTT
Found at i:3311813 original size:26 final size:25
Alignment explanation
Indices: 3311771--3311820 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 25
3311761 TGCAGTTTGG
*
3311771 TACATAAAGTTTGATTTTGGTTCAT
1 TACATAAACTTTGATTTTGGTTCAT
3311796 TACATAAAACTTTGATTTTGGTTCA
1 TACAT-AAACTTTGATTTTGGTTCA
3311821 ATTTTATACA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.30, C:0.10, G:0.14, T:0.46
Consensus pattern (25 bp):
TACATAAACTTTGATTTTGGTTCAT
Found at i:3315087 original size:20 final size:21
Alignment explanation
Indices: 3315048--3315087 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
3315038 AATTAATTAT
*
3315048 GATATTATTGATTTAGTGTATA
1 GATATTATTGA-TCAGTGTATA
3315070 GATATTATTG-TCAGTGTA
1 GATATTATTGATCAGTGTA
3315088 GGAGATCGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
22 10 0.59
ACGTcount: A:0.30, C:0.03, G:0.20, T:0.47
Consensus pattern (21 bp):
GATATTATTGATCAGTGTATA
Found at i:3315693 original size:21 final size:23
Alignment explanation
Indices: 3315662--3315713 Score: 74
Period size: 22 Copynumber: 2.3 Consensus size: 23
3315652 GCTTCGCCTC
3315662 TGATTCTTTTA-TA-ATATGATAT
1 TGATT-TTTTATTACATATGATAT
3315684 TGATTTTTTATTACATATGATAT
1 TGATTTTTTATTACATATGATAT
3315707 TG-TTTTT
1 TGATTTTT
3315714 ATGAGAGTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
21 5 0.18
22 12 0.43
23 11 0.39
ACGTcount: A:0.27, C:0.04, G:0.10, T:0.60
Consensus pattern (23 bp):
TGATTTTTTATTACATATGATAT
Found at i:3315714 original size:21 final size:21
Alignment explanation
Indices: 3315668--3315715 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
3315658 CCTCTGATTC
3315668 TTTTA-TAATATGATATTGATT
1 TTTTATTAATATGATATTGA-T
3315689 TTTTATTACATATGATATTG-T
1 TTTTATTA-ATATGATATTGAT
3315710 TTTTAT
1 TTTTAT
3315716 GAGAGTTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
21 12 0.48
22 2 0.08
23 11 0.44
ACGTcount: A:0.29, C:0.02, G:0.08, T:0.60
Consensus pattern (21 bp):
TTTTATTAATATGATATTGAT
Found at i:3315853 original size:22 final size:20
Alignment explanation
Indices: 3315815--3315856 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 20
3315805 TAATATTCTG
*
3315815 TAAATTAATTATTTTTAAAT
1 TAAATTAATTAATTTTAAAT
3315835 TAAATATAACTTAATTTTAAAT
1 TAAAT-TAA-TTAATTTTAAAT
3315857 ACTAAAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 5 0.26
21 3 0.16
22 11 0.58
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (20 bp):
TAAATTAATTAATTTTAAAT
Found at i:3318906 original size:13 final size:14
Alignment explanation
Indices: 3318890--3318925 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
3318880 CAATCTCATA
3318890 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
3318903 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
3318916 TCTC-ATTTCA
1 TCTCAATTTCA
3318926 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:3318915 original size:18 final size:19
Alignment explanation
Indices: 3318877--3318917 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
3318867 TGGTTCATGT
3318877 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
3318896 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
3318914 TTTC
1 TTTC
3318918 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:3319107 original size:39 final size:38
Alignment explanation
Indices: 3319040--3319174 Score: 101
Period size: 39 Copynumber: 3.4 Consensus size: 38
3319030 ACCAATATGG
* * *
3319040 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATATTTGA
1 CACCCAGTGCCTCATCGGCTAG-CCGAAGAAATATTTGA
* * * *
3319079 CACCCAGTGTCTCATCGGCCTAGCCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-CTAGCCGAAGAAATATTTGA
* * * * *
3319117 TACCCAGTACCTCATCGAATCTATCCGAAGAAATATAGTGA
1 CACCCAGTGCCTCATCG--GCTAGCCGAAGAAATAT-TTGA
*
3319158 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
3319175 ACTCGAGGTC
Statistics
Matches: 73, Mismatches: 18, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGCTAGCCGAAGAAATATTTGA
Found at i:3320759 original size:5 final size:5
Alignment explanation
Indices: 3320749--3320799 Score: 75
Period size: 5 Copynumber: 10.0 Consensus size: 5
3320739 TTACTTATTT
* *
3320749 ATATA ATATA ATATA ATATA ATATA CTATA ATATA ATAATA ATTTA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA AT-ATA ATATA ATATA
3320800 TATTTTTTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
5 36 0.88
6 5 0.12
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (5 bp):
ATATA
Found at i:3325178 original size:13 final size:14
Alignment explanation
Indices: 3325162--3325197 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
3325152 CAATCTCATA
3325162 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
3325175 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
3325188 TCTC-ATTTCA
1 TCTCAATTTCA
3325198 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:3325187 original size:18 final size:19
Alignment explanation
Indices: 3325149--3325189 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
3325139 TGGTTCATGT
3325149 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
3325168 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
3325186 TTTC
1 TTTC
3325190 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:3327032 original size:5 final size:5
Alignment explanation
Indices: 3327022--3327066 Score: 63
Period size: 5 Copynumber: 8.6 Consensus size: 5
3327012 TTACTTATTT
*
3327022 ATATA ATATA ATATAA TATATA ATATA ATATA CTATA ATATA ATA
1 ATATA ATATA ATAT-A -ATATA ATATA ATATA ATATA ATATA ATA
3327067 ATTTAATATA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
5 30 0.83
6 2 0.06
7 4 0.11
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:3330345 original size:3 final size:3
Alignment explanation
Indices: 3330330--3330363 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
3330320 AGGAACTATT
* *
3330330 CTG CTG TTG CTG CTG CTG CGG CTG CTG CTG CTG C
1 CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG C
3330364 GGAAAGTGAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.32, G:0.35, T:0.32
Consensus pattern (3 bp):
CTG
Found at i:3330364 original size:15 final size:15
Alignment explanation
Indices: 3330337--3330365 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
3330327 ATTCTGCTGT
3330337 TGCTGCTGCTGCGGC
1 TGCTGCTGCTGCGGC
3330352 TGCTGCTGCTGCGG
1 TGCTGCTGCTGCGG
3330366 AAAGTGATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.00, C:0.31, G:0.41, T:0.28
Consensus pattern (15 bp):
TGCTGCTGCTGCGGC
Found at i:3330398 original size:15 final size:15
Alignment explanation
Indices: 3330380--3330419 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
3330370 TGATGAGGAG
*
3330380 GAGGGTGAGGAAAGC
1 GAGGGAGAGGAAAGC
*
3330395 GAGGGAGAGGAAAGT
1 GAGGGAGAGGAAAGC
*
3330410 GAAGGAGAGG
1 GAGGGAGAGG
3330420 GAGAGGAGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.38, C:0.03, G:0.55, T:0.05
Consensus pattern (15 bp):
GAGGGAGAGGAAAGC
Found at i:3330419 original size:21 final size:21
Alignment explanation
Indices: 3330395--3330435 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
3330385 TGAGGAAAGC
*
3330395 GAGGGAGAGGAAAGTGAAGGA
1 GAGGGAGAGGAAAGGGAAGGA
*
3330416 GAGGGAGAGGAGAGGGAAGG
1 GAGGGAGAGGAAAGGGAAGG
3330436 GATGAAGAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.39, C:0.00, G:0.59, T:0.02
Consensus pattern (21 bp):
GAGGGAGAGGAAAGGGAAGGA
Found at i:3333168 original size:24 final size:24
Alignment explanation
Indices: 3333120--3333168 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
3333110 TTTATGGGGT
* * **
3333120 TAGAGTCTAAGCTTTCTTTGGCCC
1 TAGAGTCCAAGCTTTATTTCCCCC
3333144 TAGAGTCCAAGCTTTATTTCCCCC
1 TAGAGTCCAAGCTTTATTTCCCCC
3333168 T
1 T
3333169 GTGGAGACGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.18, C:0.29, G:0.16, T:0.37
Consensus pattern (24 bp):
TAGAGTCCAAGCTTTATTTCCCCC
Found at i:3333917 original size:60 final size:61
Alignment explanation
Indices: 3333810--3333931 Score: 237
Period size: 61 Copynumber: 2.0 Consensus size: 61
3333800 GTTCGAGGGT
3333810 GTTCTTTTTTCTGTTTCTTTTTGTTCACTGCCCAAATTGGGCGTTCATATGTCCATGCTTG
1 GTTCTTTTTTCTGTTTCTTTTTGTTCACTGCCCAAATTGGGCGTTCATATGTCCATGCTTG
3333871 GTTCTTTTTTCTGTTTCTTTTTGTTCACTGCCC-AATTGGGCGTTCATATGTCCATGCTTG
1 GTTCTTTTTTCTGTTTCTTTTTGTTCACTGCCCAAATTGGGCGTTCATATGTCCATGCTTG
3333931 G
1 G
3333932 ACCTTTGTTT
Statistics
Matches: 61, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
60 28 0.46
61 33 0.54
ACGTcount: A:0.11, C:0.21, G:0.19, T:0.49
Consensus pattern (61 bp):
GTTCTTTTTTCTGTTTCTTTTTGTTCACTGCCCAAATTGGGCGTTCATATGTCCATGCTTG
Found at i:3336899 original size:3 final size:3
Alignment explanation
Indices: 3336893--3336932 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
3336883 AAAAACAAAA
*
3336893 TAT TAT TAA TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
3336933 TTGCATGATA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Done.