Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 80 of 344
Found at i:26328721 original size:48 final size:48
Alignment explanation
Indices: 26328669--26328805 Score: 202
Period size: 48 Copynumber: 2.9 Consensus size: 48
26328659 ATCTATATGT
*
26328669 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATCTAC
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATAC
* **
26328717 GATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCGATATGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATAC
* ** *
26328765 GATCCCATGTAAGACCATCTCCAGGATATGGCATTGGCATC
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
26328806 CTACCATGTG
Statistics
Matches: 80, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 80 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (48 bp):
GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATAC
Found at i:26336653 original size:46 final size:46
Alignment explanation
Indices: 26336586--26336761 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 46
26336576 CGTAACCCGC
* * *
26336586 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
1 CCATAAGTCAACTCGGACTCAACTCAACGAGTTCGGACGTTCACAT
* * * **
26336632 CCATAAGTCAACTCGGACTCAACTCAACGAGTTCAGATG-CCTAGTT
1 CCATAAGTCAACTCGGACTCAACTCAACGAGTTCGGACGTTC-ACAT
* **** * *
26336678 ACATTTCACGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTC-AACTCGGACTCAACTCAACGAGTTCGGACGTTCACAT
*
26336725 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTCAACTCGGACTCAACTCAACGAGTTCGGA
26336762 TGCTCAACCA
Statistics
Matches: 101, Mismatches: 26, Indels: 6
0.76 0.20 0.05
Matches are distributed among these distances:
45 1 0.01
46 68 0.67
47 31 0.31
48 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTCAACTCGGACTCAACTCAACGAGTTCGGACGTTCACAT
Found at i:26336702 original size:93 final size:93
Alignment explanation
Indices: 26336594--26336764 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
26336584 GCCCATAAGT
* *
26336594 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAGTCAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTCAACTCGGACTCAACTCAA
26336659 CGAGTTCAGATGCCTAGTTACATTTCAC
66 CGAGTTCAGATGCCTAGTTACATTTCAC
* * *
26336687 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTCAACTCGGACTCAACTCAA
*
26336752 CGAGTTCGGATGC
66 CGAGTTCAGATGC
26336765 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTCAACTCGGACTCAACTCAA
CGAGTTCAGATGCCTAGTTACATTTCAC
Found at i:26337219 original size:30 final size:30
Alignment explanation
Indices: 26337185--26337244 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
26337175 ATTTAATACG
26337185 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
26337215 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
26337245 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:26344304 original size:93 final size:93
Alignment explanation
Indices: 26344145--26344315 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
26344135 CGCCCTAAGT
* *
26344145 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
26344210 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
26344238 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
26344303 CGAGTTCGGATGC
66 CGAGTTCGGATGC
26344316 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:26344312 original size:46 final size:46
Alignment explanation
Indices: 26344140--26344312 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
26344130 TAACCCGCCC
* * *
26344140 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
26344186 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
26344234 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
26344279 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
26344313 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 61 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:26356546 original size:10 final size:10
Alignment explanation
Indices: 26356531--26356589 Score: 75
Period size: 10 Copynumber: 5.9 Consensus size: 10
26356521 TAATTTTACT
26356531 TTTATCTTTA
1 TTTATCTTTA
*
26356541 TTTATCCTTA
1 TTTATCTTTA
26356551 TTTATCTTTA
1 TTTATCTTTA
*
26356561 ATTATCTTTA
1 TTTATCTTTA
*
26356571 TTTAAT-TTTG
1 TTT-ATCTTTA
26356581 TTTATCTTT
1 TTTATCTTT
26356590 TAGAATTTAA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
9 2 0.05
10 38 0.90
11 2 0.05
ACGTcount: A:0.20, C:0.10, G:0.02, T:0.68
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:26367594 original size:16 final size:16
Alignment explanation
Indices: 26367570--26367600 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26367560 AGTAATAATA
*
26367570 AGAAGAAGAAAAAAAT
1 AGAAAAAGAAAAAAAT
26367586 AGAAAAAGAAAAAAA
1 AGAAAAAGAAAAAAA
26367601 GTGATGTATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.81, C:0.00, G:0.16, T:0.03
Consensus pattern (16 bp):
AGAAAAAGAAAAAAAT
Found at i:26368247 original size:10 final size:10
Alignment explanation
Indices: 26368232--26368290 Score: 75
Period size: 10 Copynumber: 5.9 Consensus size: 10
26368222 AATTTTAGCT
26368232 TTTATCTTTA
1 TTTATCTTTA
*
26368242 TTTATCCTTA
1 TTTATCTTTA
26368252 TTTATCTTTA
1 TTTATCTTTA
*
26368262 ATTATCTTTA
1 TTTATCTTTA
*
26368272 TTTAAT-TGTA
1 TTT-ATCTTTA
26368282 TTTATCTTT
1 TTTATCTTT
26368291 TAGAATTTAA
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
9 2 0.05
10 37 0.90
11 2 0.05
ACGTcount: A:0.22, C:0.10, G:0.02, T:0.66
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:26371489 original size:22 final size:24
Alignment explanation
Indices: 26371461--26371508 Score: 73
Period size: 22 Copynumber: 2.1 Consensus size: 24
26371451 TAATTTTGTT
26371461 CAATTTTAACTT-TTAT-TCAAAA
1 CAATTTTAACTTGTTATATCAAAA
*
26371483 CAATTTTAATTTGTTATATCAAAA
1 CAATTTTAACTTGTTATATCAAAA
26371507 CA
1 CA
26371509 TATTATCAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 11 0.48
23 4 0.17
24 8 0.35
ACGTcount: A:0.42, C:0.12, G:0.02, T:0.44
Consensus pattern (24 bp):
CAATTTTAACTTGTTATATCAAAA
Found at i:26372974 original size:27 final size:27
Alignment explanation
Indices: 26372944--26373121 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
26372934 ATATTGAGTC
* * * *
26372944 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
26372971 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
26372998 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
26373026 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
26373053 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
26373080 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
26373107 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26373122 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:26373083 original size:82 final size:81
Alignment explanation
Indices: 26372965--26373120 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
26372955 TGCTATATAA
* *
26372965 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
26373030 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
26373047 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
26373111 CACTTAGTGC
65 CACTTAGTGC
26373121 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:26387970 original size:12 final size:12
Alignment explanation
Indices: 26387953--26387984 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
26387943 TAATATACAA
26387953 AATAAAGAAAAT
1 AATAAAGAAAAT
26387965 AATAAA-AAAAT
1 AATAAAGAAAAT
26387976 AA-AAAGAAA
1 AATAAAGAAA
26387985 TGCAAATCTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
10 3 0.16
11 10 0.53
12 6 0.32
ACGTcount: A:0.81, C:0.00, G:0.06, T:0.12
Consensus pattern (12 bp):
AATAAAGAAAAT
Found at i:26388860 original size:44 final size:45
Alignment explanation
Indices: 26388792--26389000 Score: 151
Period size: 44 Copynumber: 4.6 Consensus size: 45
26388782 CATGTGATCT
*
26388792 ACTCTACTGTAACTTCAGAGAGATAAGATCTTTTA-TTTTAATCC
1 ACTCCACTGTAACTTCAGAGAGATAAGATCTTTTAGTTTTAATCC
* ** * * *
26388836 ACTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTAAATCT
1 ACTCCACTGTAACTTCAGAGAGATAAGATCTTTTAGTTTTAATCC
* * *
26388880 ACTCCGCTGTAA-TCTCAGAGAG--AAGATCTCTGGCTTCAATTTGATGTAATCT
1 ACTCCACTGTAACT-TCAGAGAGATAAGATCT-T---TT--AGTT--T-TAATCC
* *
26388932 ACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTAATCC
1 ACTCCACTGTAACTTCAGAGAGATAAGATCTTTTAGTTTTAATCC
* * *
26388976 GCTCCACTGTAATTTCAGGGAGATA
1 ACTCCACTGTAACTTCAGAGAGATA
26389001 GGATTACTAT
Statistics
Matches: 128, Mismatches: 22, Indels: 30
0.71 0.12 0.17
Matches are distributed among these distances:
42 4 0.03
43 5 0.04
44 78 0.61
45 1 0.01
47 3 0.02
48 1 0.01
49 2 0.02
50 2 0.02
51 1 0.01
52 23 0.18
53 2 0.02
54 6 0.05
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (45 bp):
ACTCCACTGTAACTTCAGAGAGATAAGATCTTTTAGTTTTAATCC
Found at i:26388934 original size:140 final size:140
Alignment explanation
Indices: 26388769--26389027 Score: 428
Period size: 140 Copynumber: 1.9 Consensus size: 140
26388759 GATAGAATTA
* *
26388769 CTGGCTTCAATGTCATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTTTTATTTTAAT
1 CTGGCTTCAATGTCATGTAATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAAT
26388834 CCACTCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTAAATCTACTCCGCTGTAATCTCAGA
66 CCACTCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTAAATCTACTCCGCTGTAATCTCAGA
26388899 GAGAAGATCT
131 GAGAAGATCT
* *
26388909 CTGGCTTCAATTTGATGTAATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAAT
1 CTGGCTTCAATGTCATGTAATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAAT
* * * * * *
26388974 CCGCTCCACTGTAATTTCAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCT
66 CCACTCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTAAATCTACTCCGCT
26389028 AATATCTCAG
Statistics
Matches: 109, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
140 109 1.00
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.34
Consensus pattern (140 bp):
CTGGCTTCAATGTCATGTAATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAAT
CCACTCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTAAATCTACTCCGCTGTAATCTCAGA
GAGAAGATCT
Found at i:26389159 original size:54 final size:54
Alignment explanation
Indices: 26389096--26389198 Score: 179
Period size: 54 Copynumber: 1.9 Consensus size: 54
26389086 AGATAAGACC
*
26389096 TGATGCGATCTGCTCTGCTGTAACTTCAGAGAAATAAGATCCTTTATTTTAATT
1 TGATGCGATCTACTCTGCTGTAACTTCAGAGAAATAAGATCCTTTATTTTAATT
* *
26389150 TGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCTTTTATTT
1 TGATGCGATCTACTCTGCTGTAACTTCAGAGAAATAAGATCCTTTATTT
26389199 CAATCCGCTC
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 46 1.00
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.39
Consensus pattern (54 bp):
TGATGCGATCTACTCTGCTGTAACTTCAGAGAAATAAGATCCTTTATTTTAATT
Found at i:26389310 original size:44 final size:44
Alignment explanation
Indices: 26389157--26389523 Score: 163
Period size: 44 Copynumber: 8.4 Consensus size: 44
26389147 ATTTGATGCG
** * * * ***
26389157 ATCTACTCTGCTGTAACTTCAGAGAGATAAGATCTTTTATTTCA
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTCTGGCTTCA
** * * ** * **
26389201 ATCCGCTCCACTGTAACTTCAGGGAGATAGGAT-AGTGTCTTTG
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTCTGGCTTCA
* * * **
26389244 ATCTGCTCCGCTGCAATATCAGGGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTCTGGCTTCA
* * * * *
26389288 ATCTGCTCCACTGTAACCTCAGGAAGATAAGATCTGAAAT-TCTTCG
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCT---CTGGCTTCA
* * * * *
26389334 GTCTACTCCACTGTAACCTCAAGGAGATAAGA-C-CT-GATGCG
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTCTGGCTTCA
** * * *** *
26389375 ATCTACTCTGCTGTAACTTCAGAGAGATAAGATC-CTTTATTTTA
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTC-TGGCTTCA
* * * * ** * *
26389419 ATCCACTCCACTGTAACTTTAGGGAGATAGGAT-AGTGTCTTTA
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTCTGGCTTCA
* * * *
26389462 ATCTGCTCCGCTGCAATCTCAGGGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTCTGGCTTCA
* *
26389506 ATCTACTCTACTGCAACC
1 ATCTACTCCACTGTAACC
26389524 GATGGAGGCA
Statistics
Matches: 237, Mismatches: 77, Indels: 18
0.71 0.23 0.05
Matches are distributed among these distances:
41 30 0.13
42 2 0.01
43 61 0.26
44 110 0.46
45 1 0.00
46 32 0.14
47 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (44 bp):
ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTCTGGCTTCA
Found at i:26389623 original size:87 final size:86
Alignment explanation
Indices: 26389515--26389931 Score: 558
Period size: 87 Copynumber: 4.9 Consensus size: 86
26389505 AATCTACTCT
* * *
26389515 ACTGCAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGTTGTTAACGCAGGAAGGCAAGA
1 ACTGCAACCAATGAAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGA
*
26389580 TCTGCTATCTTCAACTAGCTCC
66 TCTGCT-TCTTCAACCAGCTCC
* * * *
26389602 ATTGCAGCCAATGAAGGCAAGGCTTTGTTTTCGATCTGCTTCGTTGTTAATGCAGGAAGGCAAGA
1 ACTGCAACCAATGAAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGA
* *
26389667 TCTGATTCTTTAACCAGCTCC
66 TCTGCTTCTTCAACCAGCTCC
* * * *
26389688 ACTGCAACCAATGAATGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAAGAAGGCCAGA
1 ACTGCAACCAATGAAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGA
* * ** *
26389753 TATGCTACCTTTGACCAGCTTC
66 TCTGCT-TCTTCAACCAGCTCC
* * *
26389775 ACTGCAACCAATGAAGGCAAGG--AT-TTTTCAATCTGCTTCGCTGTTAACGCAGGAAGGCAATA
1 ACTGCAACCAATGAAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGA
26389837 TCTGC-T-TT-AACCAGCTCC
66 TCTGCTTCTTCAACCAGCTCC
*
26389855 ACTGCAACCAATGAAGGCAATGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGA
1 ACTGCAACCAATGAAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGA
*
26389920 TCTTCTTCTTCA
66 TCTGCTTCTTCA
26389932 CCGATCTGTT
Statistics
Matches: 288, Mismatches: 35, Indels: 15
0.85 0.10 0.04
Matches are distributed among these distances:
80 29 0.10
81 2 0.01
82 1 0.00
83 40 0.14
84 38 0.13
85 3 0.01
86 77 0.27
87 98 0.34
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (86 bp):
ACTGCAACCAATGAAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGA
TCTGCTTCTTCAACCAGCTCC
Found at i:26389665 original size:43 final size:42
Alignment explanation
Indices: 26389529--26389665 Score: 111
Period size: 43 Copynumber: 3.2 Consensus size: 42
26389519 CAACCGATGG
26389529 AGGCAAGGCTTTGTTTTCGATCTGCTTCGTTGTTAACGCAGGA
1 AGGCAAGGCTTTGTTTTCGATCTGCTTCGTTGTTAA-GCAGGA
* * * * * * *
26389572 AGGCAA-GATCTGCTATCTTC-AACTAGCTCCATTG--CAGCCAATGA
1 AGGCAAGGCTTTG-T-T-TTCGATCT-GCTTCGTTGTTAAG-C-AGGA
26389616 AGGCAAGGCTTTGTTTTCGATCTGCTTCGTTGTTAATGCAGGA
1 AGGCAAGGCTTTGTTTTCGATCTGCTTCGTTGTTAA-GCAGGA
26389659 AGGCAAG
1 AGGCAAG
26389666 ATCTGATTCT
Statistics
Matches: 69, Mismatches: 14, Indels: 22
0.66 0.13 0.21
Matches are distributed among these distances:
42 15 0.22
43 23 0.33
44 16 0.23
45 15 0.22
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (42 bp):
AGGCAAGGCTTTGTTTTCGATCTGCTTCGTTGTTAAGCAGGA
Found at i:26389888 original size:167 final size:170
Alignment explanation
Indices: 26389515--26389920 Score: 575
Period size: 173 Copynumber: 2.4 Consensus size: 170
26389505 AATCTACTCT
* * *
26389515 ACTGCAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGTTGTTAACGCAGGAAGGCAAGA
1 ACTGCAACCAATGAAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGA
* * * * * * *
26389580 TCTGCTATCTTCAACTAGCTCCATTGCAGCCAATGAAGGCAAGGCTTTGTTTTCGATCTGCTTCG
66 TATGCTACCTTCAACCAGCTCCACTGCAACCAATGAAGGCAAGGC-ATGTTTTCAATCTGCTTCG
* *
26389645 TTGTTAATGCAGGAAGGCAAGATCTGATTCTTTAACCAGCTCC
130 CTGTTAACGCAGGAAGGCAAGATCTG--TCTTTAACCAGCTCC
* * * *
26389688 ACTGCAACCAATGAATGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAAGAAGGCCAGA
1 ACTGCAACCAATGAAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGA
** *
26389753 TATGCTACCTTTGACCAGCTTCACTGCAACCAATGAAGGCAAGG-AT-TTTTCAATCTGCTTCGC
66 TATGCTACCTTCAACCAGCTCCACTGCAACCAATGAAGGCAAGGCATGTTTTCAATCTGCTTCGC
*
26389816 TGTTAACGCAGGAAGGCAATATCTG-CTTTAACCAGCTCC
131 TGTTAACGCAGGAAGGCAAGATCTGTCTTTAACCAGCTCC
*
26389855 ACTGCAACCAATGAAGGCAATGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGA
1 ACTGCAACCAATGAAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGA
26389920 T
66 T
26389921 CTTCTTCTTC
Statistics
Matches: 208, Mismatches: 25, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
167 75 0.36
170 38 0.18
171 1 0.00
173 94 0.45
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (170 bp):
ACTGCAACCAATGAAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGA
TATGCTACCTTCAACCAGCTCCACTGCAACCAATGAAGGCAAGGCATGTTTTCAATCTGCTTCGC
TGTTAACGCAGGAAGGCAAGATCTGTCTTTAACCAGCTCC
Found at i:26392039 original size:8 final size:8
Alignment explanation
Indices: 26392022--26392087 Score: 57
Period size: 8 Copynumber: 8.4 Consensus size: 8
26392012 TATTTTTGAC
26392022 TTTGATTT
1 TTTGATTT
*
26392030 TTTTA-TT
1 TTTGATTT
26392037 TTT-A-TT
1 TTTGATTT
*
26392043 TTTGTTTTCT
1 TTTG-ATT-T
*
26392053 TTTGATAT
1 TTTGATTT
*
26392061 TTTGATAT
1 TTTGATTT
26392069 TTTGATTT
1 TTTGATTT
26392077 TTTGATTT
1 TTTGATTT
26392085 TTT
1 TTT
26392088 TTGAGTCTGA
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
6 6 0.12
7 5 0.10
8 31 0.63
9 2 0.04
10 5 0.10
ACGTcount: A:0.14, C:0.02, G:0.09, T:0.76
Consensus pattern (8 bp):
TTTGATTT
Found at i:26398086 original size:12 final size:13
Alignment explanation
Indices: 26398063--26398091 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
26398053 TCAAAATTTG
26398063 AAAATAATAATAA
1 AAAATAATAATAA
26398076 AAAATAA-AATAA
1 AAAATAATAATAA
26398088 AAAA
1 AAAA
26398092 AGTAAATAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (13 bp):
AAAATAATAATAA
Found at i:26398498 original size:22 final size:23
Alignment explanation
Indices: 26398451--26398502 Score: 56
Period size: 22 Copynumber: 2.3 Consensus size: 23
26398441 TAGTAAAGAT
* *
26398451 AATAATAGTAAAT-AATAATAAT
1 AATAATAATAAATAAATAATAAA
26398473 AATAATAAT-AATAAATAA-ACAA
1 AATAATAATAAATAAATAATA-AA
26398495 AATAATAA
1 AATAATAA
26398503 AGCGACTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
21 4 0.15
22 22 0.85
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (23 bp):
AATAATAATAAATAAATAATAAA
Found at i:26398498 original size:25 final size:25
Alignment explanation
Indices: 26398449--26398502 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
26398439 AATAGTAAAG
* *
26398449 ATAATAATAGTAAATAATAATAATA
1 ATAATAATAATAAATAATAAAAATA
26398474 ATAATAATAATAAATAA-ACAAAATA
1 ATAATAATAATAAATAATA-AAAATA
26398499 ATAA
1 ATAA
26398503 AGCGACTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 1 0.04
25 25 0.96
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.28
Consensus pattern (25 bp):
ATAATAATAATAAATAATAAAAATA
Found at i:26398502 original size:3 final size:3
Alignment explanation
Indices: 26398398--26398486 Score: 81
Period size: 3 Copynumber: 29.3 Consensus size: 3
26398388 AGGTATAAAT
* * * * * * *
26398398 ATA ATG ATA GTA ATA ATA ATA GTA GTA ATA ATA CTA ACA ATA ATA GTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
26398446 A-A GATA ATA ATA GTAA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA -ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA A
26398487 ATAAACAAAA
Statistics
Matches: 69, Mismatches: 14, Indels: 6
0.78 0.16 0.07
Matches are distributed among these distances:
2 1 0.01
3 65 0.94
4 3 0.04
ACGTcount: A:0.60, C:0.02, G:0.08, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:26400058 original size:16 final size:16
Alignment explanation
Indices: 26400037--26400072 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
26400027 GTTTTATATG
*
26400037 TGAATTGATAATGAAA
1 TGAATTAATAATGAAA
*
26400053 TGAATTAATAATGATA
1 TGAATTAATAATGAAA
26400069 TGAA
1 TGAA
26400073 AATTGGTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.17, T:0.33
Consensus pattern (16 bp):
TGAATTAATAATGAAA
Found at i:26400373 original size:17 final size:17
Alignment explanation
Indices: 26400338--26400378 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
26400328 TGCTTCTAAG
*
26400338 AAGCATTTTGCGACAAA
1 AAGCATTTTGAGACAAA
26400355 AAGCACTTTTGAGAC-AA
1 AAGCA-TTTTGAGACAAA
26400372 AAGCATT
1 AAGCATT
26400379 CCTAAACAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 2 0.09
17 12 0.55
18 8 0.36
ACGTcount: A:0.41, C:0.17, G:0.17, T:0.24
Consensus pattern (17 bp):
AAGCATTTTGAGACAAA
Found at i:26400501 original size:17 final size:18
Alignment explanation
Indices: 26400474--26400507 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
26400464 TTTTAGCTTC
26400474 TCCCAAAAAGCACTTTTT
1 TCCCAAAAAGCACTTTTT
26400492 TCCC-AAAAGCACTTTT
1 TCCCAAAAAGCACTTTT
26400508 GAGAAGTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.32, C:0.29, G:0.06, T:0.32
Consensus pattern (18 bp):
TCCCAAAAAGCACTTTTT
Found at i:26405468 original size:29 final size:30
Alignment explanation
Indices: 26405435--26405504 Score: 88
Period size: 29 Copynumber: 2.3 Consensus size: 30
26405425 AAATTAAAAT
*
26405435 TTCATGTATAAAATTGCAGA-AAATCAAAG
1 TTCATGTATAAAATTGCACATAAATCAAAG
* **
26405464 TTCATGTATACAATTGCACATTAAATCGTAG
1 TTCATGTATAAAATTGCACA-TAAATCAAAG
26405495 TTCATGTATA
1 TTCATGTATA
26405505 GTTTTGAGAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 18 0.51
31 17 0.49
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.34
Consensus pattern (30 bp):
TTCATGTATAAAATTGCACATAAATCAAAG
Found at i:26409013 original size:21 final size:21
Alignment explanation
Indices: 26408987--26409031 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
26408977 GGTGGCGACT
* *
26408987 GTGTTGTTGGTGCTTGTGGCG
1 GTGTTGCTGGTGCTGGTGGCG
*
26409008 GTGTTGCTGGTGCTGGTGGTG
1 GTGTTGCTGGTGCTGGTGGCG
26409029 GTG
1 GTG
26409032 GTCGGATTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.00, C:0.09, G:0.51, T:0.40
Consensus pattern (21 bp):
GTGTTGCTGGTGCTGGTGGCG
Found at i:26419323 original size:21 final size:21
Alignment explanation
Indices: 26419297--26419336 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
26419287 TTTTTTTAAA
*
26419297 TTAAAAAATAAATTAATTTTT
1 TTAAAAAATAAATAAATTTTT
*
26419318 TTAAAAAGTAAATAAATTT
1 TTAAAAAATAAATAAATTT
26419337 AAAAGTATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (21 bp):
TTAAAAAATAAATAAATTTTT
Found at i:26419390 original size:16 final size:17
Alignment explanation
Indices: 26419359--26419394 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
26419349 AAAATTTTGA
26419359 AAATAATAAAAAATTAT
1 AAATAATAAAAAATTAT
*
26419376 AAATAA-AAAATATTAT
1 AAATAATAAAAAATTAT
26419392 AAA
1 AAA
26419395 AGTTTTAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (17 bp):
AAATAATAAAAAATTAT
Found at i:26419442 original size:29 final size:29
Alignment explanation
Indices: 26419408--26419467 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
26419398 TTTAAAGTTA
*
26419408 TAAAAATTAAATTAAATTGTGTTTAATTTT
1 TAAAATTTAAATTAAATT-TGTTTAATTTT
* * *
26419438 TAAAATTTTAATTCAATTTTTTTAATTTT
1 TAAAATTTAAATTAAATTTGTTTAATTTT
26419467 T
1 T
26419468 TTAACTTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 11 0.42
30 15 0.58
ACGTcount: A:0.38, C:0.02, G:0.03, T:0.57
Consensus pattern (29 bp):
TAAAATTTAAATTAAATTTGTTTAATTTT
Found at i:26419478 original size:17 final size:16
Alignment explanation
Indices: 26419456--26419503 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 16
26419446 TAATTCAATT
26419456 TTTTTAATTTTTTTAA
1 TTTTTAATTTTTTTAA
*
26419472 CTTTTTAATATCTTTTTTA
1 -TTTTTAAT-T-TTTTTAA
26419491 TTTTTATATTTTT
1 TTTTTA-ATTTTT
26419504 AAATAAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 11 0.41
18 8 0.30
19 8 0.30
ACGTcount: A:0.21, C:0.04, G:0.00, T:0.75
Consensus pattern (16 bp):
TTTTTAATTTTTTTAA
Found at i:26419522 original size:18 final size:20
Alignment explanation
Indices: 26419499--26419538 Score: 66
Period size: 18 Copynumber: 2.1 Consensus size: 20
26419489 TATTTTTATA
26419499 TTTTTAAA-TAAAAA-TAAT
1 TTTTTAAACTAAAAATTAAT
26419517 TTTTTAAACTAAAAATTAAT
1 TTTTTAAACTAAAAATTAAT
26419537 TT
1 TT
26419539 CCAAATCTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 8 0.40
19 6 0.30
20 6 0.30
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (20 bp):
TTTTTAAACTAAAAATTAAT
Found at i:26422061 original size:47 final size:48
Alignment explanation
Indices: 26421915--26422135 Score: 264
Period size: 48 Copynumber: 4.6 Consensus size: 48
26421905 TGAGATCCTA
* *** * ** * *
26421915 TGTAAGACCATGTCTGGGACATGGCATTGGCACCCGAGATAAGAGCAAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGC-GTTGATATGTGTGCTAG
*
26421964 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCTAG
**
26422012 TGTAAGATGATGTCTGGGACATGG-ATCGGCGTTGATATGTGTGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCTAG
* * *
26422059 TGTAAGACCATGTCTGGGACATGGCATCGACGATGATATGTGTGCTAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCTAG
* * *
26422107 TGTAAGACCATGTTTAGGACATGACATCG
1 TGTAAGACCATGTCTGGGACATGGCATCG
26422136 ACACCGATAT
Statistics
Matches: 151, Mismatches: 20, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
47 44 0.29
48 77 0.51
49 30 0.20
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCTAG
Found at i:26428607 original size:40 final size:40
Alignment explanation
Indices: 26428445--26428600 Score: 217
Period size: 40 Copynumber: 3.9 Consensus size: 40
26428435 TATTCGGATG
26428445 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
26428485 A-ATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACC
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
26428525 A-AATCCGGGCTAAGTCCCGAAGGCATTGGTGTGAGTTACT
1 ATAA-CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
26428565 ATAACCGAGCTATGTCCCGAAGGCATTTGAGCGAGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
26428601 AGCTATATCC
Statistics
Matches: 102, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 99 0.97
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:26433289 original size:11 final size:12
Alignment explanation
Indices: 26433273--26433302 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
26433263 ACTTTGGGTA
26433273 AGAAATGAAG-T
1 AGAAATGAAGCT
26433284 AGAAATGAAGCT
1 AGAAATGAAGCT
26433296 AGAAATG
1 AGAAATG
26433303 GCTTCATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 10 0.56
12 8 0.44
ACGTcount: A:0.53, C:0.03, G:0.27, T:0.17
Consensus pattern (12 bp):
AGAAATGAAGCT
Found at i:26442562 original size:40 final size:40
Alignment explanation
Indices: 26442479--26442664 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
26442469 TTGAATGATG
* * * *
26442479 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
26442519 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26442559 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26442599 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
26442640 -CTGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26442665 AACGAGTAGC
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 121 0.92
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26442671 original size:80 final size:79
Alignment explanation
Indices: 26442532--26442697 Score: 219
Period size: 80 Copynumber: 2.1 Consensus size: 79
26442522 GGACTAAGAT
* **
26442532 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCT
*
26442596 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAATC
* *
26442612 CCGAAGGCATTTGTGCGAGTTACTATAA-CTGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCT
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCT
* *
26442676 ATATCCGGTTAAATT
65 AAATCCGGTTAAATC
26442691 CCGAAGG
1 CCGAAGG
26442698 TACGTGATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
79 16 0.21
80 58 0.76
81 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAATC
Found at i:26450607 original size:40 final size:40
Alignment explanation
Indices: 26450524--26450709 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
26450514 TTGAATGATG
* * * *
26450524 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
26450564 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26450604 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26450644 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
26450685 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26450710 AACGAGTAGC
Statistics
Matches: 133, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 1 0.01
40 122 0.92
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26450716 original size:80 final size:79
Alignment explanation
Indices: 26450577--26450742 Score: 228
Period size: 80 Copynumber: 2.1 Consensus size: 79
26450567 GGACTAAGAT
* **
26450577 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCT
*
26450641 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAATC
*
26450657 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCT
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCT
* *
26450721 ATATCCGGTTAAATT
65 AAATCCGGTTAAATC
26450736 CCGAAGG
1 CCGAAGG
26450743 TACGTGATTT
Statistics
Matches: 77, Mismatches: 7, Indels: 5
0.87 0.08 0.06
Matches are distributed among these distances:
79 16 0.21
80 59 0.77
81 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAATC
Found at i:26454159 original size:16 final size:16
Alignment explanation
Indices: 26454138--26454207 Score: 88
Period size: 16 Copynumber: 4.4 Consensus size: 16
26454128 TGAATTACTT
*
26454138 ATTACAGCTCTAGTCC
1 ATTACAGCTCTATTCC
* * *
26454154 ATTACAACCCTATTTC
1 ATTACAGCTCTATTCC
*
26454170 ATTACAGCTCTATTCA
1 ATTACAGCTCTATTCC
26454186 ATTACAGC-CTATTCC
1 ATTACAGCTCTATTCC
26454201 ATTACAG
1 ATTACAG
26454208 TGAACCAAAC
Statistics
Matches: 45, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
15 13 0.29
16 32 0.71
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.34
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:26454204 original size:31 final size:32
Alignment explanation
Indices: 26454138--26454207 Score: 97
Period size: 32 Copynumber: 2.2 Consensus size: 32
26454128 TGAATTACTT
* *
26454138 ATTACAGCTCTAGTCCATTACAACCCTATTTC
1 ATTACAGCTCTAGTCAATTACAACCCTATTCC
* *
26454170 ATTACAGCTCTATTCAATTAC-AGCCTATTCC
1 ATTACAGCTCTAGTCAATTACAACCCTATTCC
26454201 ATTACAG
1 ATTACAG
26454208 TGAACCAAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 15 0.44
32 19 0.56
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.34
Consensus pattern (32 bp):
ATTACAGCTCTAGTCAATTACAACCCTATTCC
Found at i:26456732 original size:9 final size:9
Alignment explanation
Indices: 26456718--26456742 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
26456708 TGATTCTATG
26456718 ATTATGGAT
1 ATTATGGAT
26456727 ATTATGGAT
1 ATTATGGAT
26456736 ATTATGG
1 ATTATGG
26456743 GAATTGTAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.24, T:0.44
Consensus pattern (9 bp):
ATTATGGAT
Found at i:26462149 original size:22 final size:22
Alignment explanation
Indices: 26462124--26462168 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
26462114 AGGTAGAGTA
26462124 TGTGCACCGAAAGATTTAGAAC
1 TGTGCACCGAAAGATTTAGAAC
**
26462146 TGTGCATTGAAAGATTTAGAAC
1 TGTGCACCGAAAGATTTAGAAC
26462168 T
1 T
26462169 AGTACAGAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.36, C:0.13, G:0.22, T:0.29
Consensus pattern (22 bp):
TGTGCACCGAAAGATTTAGAAC
Found at i:26489127 original size:17 final size:17
Alignment explanation
Indices: 26489105--26489137 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
26489095 CCAAGTTAAG
26489105 GACATCAAAATGATAAT
1 GACATCAAAATGATAAT
26489122 GACATCAAAATGATAA
1 GACATCAAAATGATAA
26489138 GGACCTCTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.55, C:0.12, G:0.12, T:0.21
Consensus pattern (17 bp):
GACATCAAAATGATAAT
Found at i:26496060 original size:13 final size:13
Alignment explanation
Indices: 26496039--26496078 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
26496029 AAAGTAATCG
*
26496039 CACACGGGCGTTT
1 CACACGGGCGTGT
*
26496052 CACATGGGCGTGT
1 CACACGGGCGTGT
*
26496065 CACACGGGTGTGT
1 CACACGGGCGTGT
26496078 C
1 C
26496079 CTTGCCGAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.15, C:0.28, G:0.35, T:0.23
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:26503036 original size:63 final size:64
Alignment explanation
Indices: 26502824--26503037 Score: 189
Period size: 67 Copynumber: 3.2 Consensus size: 64
26502814 GATGTATACA
* * * *
26502824 ATGTGTACAAGAGAGCTACGAGACATTATGAGGTAGCTAGGTCGCAT-AGGTGATACTATGTGTA
1 ATGTATACAAGAGAGCTACGAG--A-TA-GAAGTAGCTAAGTCACATGA-GTGATACTATGTGTA
26502888 CACC
61 CACC
* * ** * * * * *
26502892 ATGTATACAAGAGAGCTACGAGATAGATGTAGCTAGGTTGCATGTGTGGTTCTAGGTGAAGGACA
1 ATGTATACAAGAGAGCTACGAGATAGAAGTAGCTAAGTCACATGAGTGATACTA--TG-TGTACA
26502957 CC
63 CC
* * *
26502959 ATGTAAACAAGAGAGCTATGAGATA-AAGTGGCTAAGTCACATGAGTGATACTATGTGTACACC
1 ATGTATACAAGAGAGCTACGAGATAGAAGTAGCTAAGTCACATGAGTGATACTATGTGTACACC
*
26503022 ATGTGTACAAGAGAGC
1 ATGTATACAAGAGAGC
26503038 CAAAATTATG
Statistics
Matches: 120, Mismatches: 22, Indels: 13
0.77 0.14 0.08
Matches are distributed among these distances:
63 20 0.17
64 25 0.21
65 2 0.02
66 23 0.19
67 29 0.24
68 21 0.17
ACGTcount: A:0.33, C:0.14, G:0.28, T:0.24
Consensus pattern (64 bp):
ATGTATACAAGAGAGCTACGAGATAGAAGTAGCTAAGTCACATGAGTGATACTATGTGTACACC
Found at i:26509866 original size:30 final size:30
Alignment explanation
Indices: 26509830--26509891 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
26509820 AGCATGAGAT
26509830 TGAATGATGTATGGAAAGAAATGCTTGATA
1 TGAATGATGTATGGAAAGAAATGCTTGATA
* *
26509860 TGAATGATGTTTGGAAAGAAATGTTTGATA
1 TGAATGATGTATGGAAAGAAATGCTTGATA
26509890 TG
1 TG
26509892 CTTTTGACAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.37, C:0.02, G:0.27, T:0.34
Consensus pattern (30 bp):
TGAATGATGTATGGAAAGAAATGCTTGATA
Found at i:26525177 original size:24 final size:24
Alignment explanation
Indices: 26525142--26525317 Score: 208
Period size: 24 Copynumber: 7.0 Consensus size: 24
26525132 ACTTAGCACC
26525142 ATGCCATGGACTTATTTCACTTAG
1 ATGCCATGGACTTATTTCACTTAG
*
26525166 ATACCATGGACTTATTTCACTTAG
1 ATGCCATGGACTTATTTCACTTAG
*
26525190 ATGCCATGGACTTATTTCATTTAG
1 ATGCCATGGACTTATTTCACTTAG
* *
26525214 CACATTGCCATGGGCTTATTTCATTTAG
1 ---A-TGCCATGGACTTATTTCACTTAG
*
26525242 ATGCCATGGTCTTATTTCACTTAG
1 ATGCCATGGACTTATTTCACTTAG
* *
26525266 CATATTGTCATAGACTTATTTCACTTAG
1 ---A-TGCCATGGACTTATTTCACTTAG
*
26525294 ATGCCATGGTCTTATTTCACTTAG
1 ATGCCATGGACTTATTTCACTTAG
26525318 CACAATTTCA
Statistics
Matches: 132, Mismatches: 12, Indels: 16
0.82 0.08 0.10
Matches are distributed among these distances:
24 86 0.65
25 2 0.02
27 2 0.02
28 42 0.32
ACGTcount: A:0.24, C:0.20, G:0.15, T:0.40
Consensus pattern (24 bp):
ATGCCATGGACTTATTTCACTTAG
Found at i:26525216 original size:76 final size:77
Alignment explanation
Indices: 26525130--26525317 Score: 233
Period size: 76 Copynumber: 2.5 Consensus size: 77
26525120 GGGAAATTTC
26525130 TCACTTAGCACCATGCCATGGACTTATTTCACTTAGATACCATGGACTTATTTCACTTAG-A-TG
1 TCACTTAGCA-CATGCCATGGACTTATTTCACTTAGATACCATGGACTTATTTCACTTAGAATTG
*
26525193 CCATGGACTTATT
65 CCATAGACTTATT
* * * * *
26525206 TCATTTAGCACATTGCCATGGGCTTATTTCATTTAGATGCCATGGTCTTATTTCACTTAGCATAT
1 TCACTTAGCACA-TGCCATGGACTTATTTCACTTAGATACCATGGACTTATTTCACTTAG-A-AT
*
26525271 TGTCATAGACTTATT
63 TGCCATAGACTTATT
*
26525286 TCACTTAG---ATGCCATGGTCTTATTTCACTTAG
1 TCACTTAGCACATGCCATGGACTTATTTCACTTAG
26525318 CACAATTTCA
Statistics
Matches: 97, Mismatches: 10, Indels: 10
0.83 0.09 0.09
Matches are distributed among these distances:
75 2 0.02
76 73 0.75
77 1 0.01
79 1 0.01
80 20 0.21
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.39
Consensus pattern (77 bp):
TCACTTAGCACATGCCATGGACTTATTTCACTTAGATACCATGGACTTATTTCACTTAGAATTGC
CATAGACTTATT
Found at i:26525329 original size:52 final size:51
Alignment explanation
Indices: 26525142--26525319 Score: 236
Period size: 52 Copynumber: 3.5 Consensus size: 51
26525132 ACTTAGCACC
* *
26525142 ATGCCATGGACTTATTTCACTTAG--A-TACCATGGACTTATTTCACTTAG
1 ATGCCATGGACTTATTTCACTTAGCAATTGCCATAGACTTATTTCACTTAG
* * * *
26525190 ATGCCATGGACTTATTTCATTTAGCACATTGCCATGGGCTTATTTCATTTAG
1 ATGCCATGGACTTATTTCACTTAGCA-ATTGCCATAGACTTATTTCACTTAG
* *
26525242 ATGCCATGGTCTTATTTCACTTAGCATATTGTCATAGACTTATTTCACTTAG
1 ATGCCATGGACTTATTTCACTTAGCA-ATTGCCATAGACTTATTTCACTTAG
*
26525294 ATGCCATGGTCTTATTTCACTTAGCA
1 ATGCCATGGACTTATTTCACTTAGCA
26525320 CAATTTCATA
Statistics
Matches: 115, Mismatches: 11, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
48 23 0.20
51 1 0.01
52 91 0.79
ACGTcount: A:0.25, C:0.20, G:0.15, T:0.40
Consensus pattern (51 bp):
ATGCCATGGACTTATTTCACTTAGCAATTGCCATAGACTTATTTCACTTAG
Found at i:26533183 original size:37 final size:37
Alignment explanation
Indices: 26533123--26533200 Score: 111
Period size: 37 Copynumber: 2.1 Consensus size: 37
26533113 TATTACGAAG
* * *
26533123 TCTTACCCGGACATAATCTCCACACGAAGTTATCGGA
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
* *
26533160 TCTTACCCGGACAAAATCCCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
26533197 TCTT
1 TCTT
26533201 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
Found at i:26533446 original size:49 final size:47
Alignment explanation
Indices: 26533319--26533688 Score: 650
Period size: 47 Copynumber: 7.8 Consensus size: 47
26533309 CCCTTCGGGA
* * * *
26533319 CTTATCACATTTATACACTTTCACATCCATCACATTGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26533366 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26533413 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26533462 CTTATCACATATATATACACTTTCACATTCATCACATCCGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26533511 CTTATCACATATATACACTTTCATATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26533558 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26533605 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26533652 CTTATCACATATATACACTTTCACATTCATCACATCG
1 CTTATCACATATATACACTTTCACATTCATCACATCG
26533689 AATCCTAAAT
Statistics
Matches: 313, Mismatches: 8, Indels: 4
0.96 0.02 0.01
Matches are distributed among these distances:
47 218 0.70
49 95 0.30
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26537616 original size:40 final size:40
Alignment explanation
Indices: 26537584--26537935 Score: 569
Period size: 40 Copynumber: 8.8 Consensus size: 40
26537574 CCAGCATGAT
* * * *
26537584 TGCTCTTCGAGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
26537624 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
26537664 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
26537704 TGCTCCTCGGGACTTAGCCCAGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
26537744 TGCTCTTCGGAACTTAGCCCGAATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
26537784 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
26537824 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
26537864 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
26537904 TGCTCTTCGAGACTTAGCTCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
26537936 CTCAATTCTC
Statistics
Matches: 290, Mismatches: 22, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 290 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:26539211 original size:37 final size:37
Alignment explanation
Indices: 26539151--26539228 Score: 111
Period size: 37 Copynumber: 2.1 Consensus size: 37
26539141 TATTACGAAG
* * *
26539151 TCTTACCCGGACATAATCTCCACACGAAGTTATCGGA
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
* *
26539188 TCTTACCCGGACAAAATCCCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
26539225 TCTT
1 TCTT
26539229 TAGAGCTCAG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
Found at i:26539473 original size:49 final size:47
Alignment explanation
Indices: 26539347--26539669 Score: 538
Period size: 47 Copynumber: 6.8 Consensus size: 47
26539337 CCCTTCGGGA
* * * * * *
26539347 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCTAATAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26539394 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26539441 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26539490 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26539539 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26539586 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26539633 CTTATCACATATATACACTTTCACATTCATCACATCG
1 CTTATCACATATATACACTTTCACATTCATCACATCG
26539670 AATCCTAAAT
Statistics
Matches: 264, Mismatches: 10, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 169 0.64
49 95 0.36
ACGTcount: A:0.31, C:0.29, G:0.07, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26539551 original size:96 final size:94
Alignment explanation
Indices: 26539347--26539669 Score: 538
Period size: 96 Copynumber: 3.4 Consensus size: 94
26539337 CCCTTCGGGA
* * * * * *
26539347 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCTAATAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
26539412 TTTCACATTCATCACATCAGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
26539441 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
26539506 ACACTTTCACATTCATCACATCGGCCATTAGGC
62 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
26539539 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
26539604 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
26539633 CTTATCACATATATACACTTTCACATTCATCACATCG
1 CTTATCACATATATACACTTTCACATTCATCACATCG
26539670 AATCCTAAAT
Statistics
Matches: 217, Mismatches: 8, Indels: 8
0.93 0.03 0.03
Matches are distributed among these distances:
94 84 0.39
96 87 0.40
98 46 0.21
ACGTcount: A:0.31, C:0.29, G:0.07, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:26551989 original size:33 final size:33
Alignment explanation
Indices: 26551947--26552013 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
26551937 AAACACACAC
26551947 AAAGTAAGATTTCAAAAGCTTAATAAGCCATAT
1 AAAGTAAGATTTCAAAAGCTTAATAAGCCATAT
26551980 AAAGTAAGATTTCAAAAGCTTAATAAGCCATAT
1 AAAGTAAGATTTCAAAAGCTTAATAAGCCATAT
26552013 A
1 A
26552014 TAAATAAACT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.49, C:0.12, G:0.12, T:0.27
Consensus pattern (33 bp):
AAAGTAAGATTTCAAAAGCTTAATAAGCCATAT
Found at i:26552402 original size:43 final size:42
Alignment explanation
Indices: 26552345--26552426 Score: 119
Period size: 43 Copynumber: 1.9 Consensus size: 42
26552335 AATGCCAACG
* * * *
26552345 TCCCAGACATGGTCTTACATGTAATCAAATATTGATGCCACTA
1 TCCCAGACAGGGTCTTACACGAAATCAAATA-CGATGCCACTA
26552388 TCCCAGACAGGGTCTTACACGAAATCAAATACGATGCCA
1 TCCCAGACAGGGTCTTACACGAAATCAAATACGATGCCA
26552427 ACGTCCAGAC
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
42 7 0.20
43 28 0.80
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (42 bp):
TCCCAGACAGGGTCTTACACGAAATCAAATACGATGCCACTA
Found at i:26554026 original size:41 final size:41
Alignment explanation
Indices: 26553914--26554026 Score: 127
Period size: 41 Copynumber: 2.7 Consensus size: 41
26553904 CACTATACCA
* * * *
26553914 ATGCCATATCCCATATATGGTCTTACATGGGATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACA-CGAATATCATATCG
* * *
26553956 ATGCCAATAGCCTAGCTATGGTCTTACACGAATATCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAATATCATATCG
* *
26553998 ATGTCATATCCCAGATTTGGTCTTACACG
1 ATGCCATATCCCAGATATGGTCTTACACG
26554027 TAATCTCAAA
Statistics
Matches: 58, Mismatches: 12, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
41 20 0.34
42 20 0.34
43 18 0.31
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACACGAATATCATATCG
Found at i:26561411 original size:43 final size:42
Alignment explanation
Indices: 26561336--26561445 Score: 134
Period size: 43 Copynumber: 2.6 Consensus size: 42
26561326 ATACCAATGT
* * *
26561336 CATATCCCAGATATGGTCTTACATGGGATCTCATATCGATGC
1 CATAGCCCAGATATGGTCTTACACGAGATCTCATATCGATGC
*
26561378 CAATAGCCCAGCTATGGTCTTACACGA-AGTCTCATATCGATGC
1 C-ATAGCCCAGATATGGTCTTACACGAGA-TCTCATATCGATGC
*
26561421 CATATCCC-GAATATGGTCTTACACG
1 CATAGCCCAG-ATATGGTCTTACACG
26561446 TAATCTTAAC
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
41 1 0.02
42 22 0.37
43 36 0.61
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.28
Consensus pattern (42 bp):
CATAGCCCAGATATGGTCTTACACGAGATCTCATATCGATGC
Found at i:26564658 original size:27 final size:27
Alignment explanation
Indices: 26564607--26564768 Score: 189
Period size: 27 Copynumber: 6.0 Consensus size: 27
26564597 ACAAAGGGGT
* * * * *
26564607 AAAATAGTCATCTTACCATAAAAGGGT
1 AAAACAGTCATTTTACCACATAAGGGC
* * *
26564634 AAAATAATCATTTTATCACATAAGGGC
1 AAAACAGTCATTTTACCACATAAGGGC
*
26564661 AAAACAGTCATTTTACCACATACGGGC
1 AAAACAGTCATTTTACCACATAAGGGC
* *
26564688 AAAACAGCCATTTTACCTCATAAGGGC
1 AAAACAGTCATTTTACCACATAAGGGC
*
26564715 AAAACAGTCATTTTACCTCATAAGGGC
1 AAAACAGTCATTTTACCACATAAGGGC
* * *
26564742 AAAATAGTCATTTCACTACATAAGGGC
1 AAAACAGTCATTTTACCACATAAGGGC
26564769 TGTAGAAGGC
Statistics
Matches: 117, Mismatches: 18, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 117 1.00
ACGTcount: A:0.40, C:0.20, G:0.14, T:0.25
Consensus pattern (27 bp):
AAAACAGTCATTTTACCACATAAGGGC
Found at i:26565945 original size:17 final size:17
Alignment explanation
Indices: 26565763--26565976 Score: 97
Period size: 17 Copynumber: 12.7 Consensus size: 17
26565753 TAATTTAATC
*
26565763 TATTATTATTATTTATTA
1 TATTATTATTA-TTACTA
* *
26565781 TAGTACTATTATTATCT-
1 TATTATTATTATTA-CTA
* *
26565798 T-CTATTATCATTAC--
1 TATTATTATTATTACTA
* *
26565812 TATTATTATTCTTGCTA
1 TATTATTATTATTACTA
**
26565829 TTATTTATTATCGTTA-T-
1 -TA-TTATTATTATTACTA
26565846 TATTATTCA-TATTA-T-
1 TATTATT-ATTATTACTA
* *
26565861 TATTATTATGTTTTACCA
1 TATTATTAT-TATTACTA
*
26565879 T-TTATTATTATTATTA
1 TATTATTATTATTACTA
*
26565895 TTATTATTATTATTATTA
1 -TATTATTATTATTACTA
* * *
26565913 CTACTACTACTATTACTA
1 -TATTATTATTATTACTA
*
26565931 TATTGTTATTATTACTA
1 TATTATTATTATTACTA
* *
26565948 TCTTATTATCATTACTA
1 TATTATTATTATTACTA
* *
26565965 TACTATTTTTAT
1 TATTATTATTAT
26565977 CGATTACTCT
Statistics
Matches: 147, Mismatches: 36, Indels: 27
0.70 0.17 0.13
Matches are distributed among these distances:
14 2 0.01
15 26 0.18
16 21 0.14
17 47 0.32
18 42 0.29
19 9 0.06
ACGTcount: A:0.29, C:0.10, G:0.02, T:0.58
Consensus pattern (17 bp):
TATTATTATTATTACTA
Found at i:26565956 original size:3 final size:3
Alignment explanation
Indices: 26565763--26565944 Score: 111
Period size: 3 Copynumber: 59.7 Consensus size: 3
26565753 TAATTTAATC
* * *
26565763 TAT TAT TAT TATT TAT TA- TAG TAC TAT TAT TAT CT-T CTAT TAT CAT
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT -TAT -TAT TAT TAT
* * ** **
26565809 TAC TAT TAT TAT TCT TGC TAT TATT TAT TAT CGT TAT TAT TAT TCA-
1 TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT T-AT
* * *
26565855 TAT TAT TAT TAT TAT GTTT TAC CATT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT -TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT
* * * * * *
26565902 TAT TAT TAT TAC TAC TAC TAC TAT TAC TA- TAT TGT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
26565945 CTATCTTATT
Statistics
Matches: 143, Mismatches: 26, Indels: 20
0.76 0.14 0.11
Matches are distributed among these distances:
2 5 0.03
3 126 0.88
4 12 0.08
ACGTcount: A:0.30, C:0.09, G:0.03, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:26565984 original size:21 final size:22
Alignment explanation
Indices: 26565943--26565984 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
26565933 TTGTTATTAT
26565943 TACTATCTTATTATCATTACTA
1 TACTATCTTATTATCATTACTA
26565965 TACTAT-TT-TTATCGATTACT
1 TACTATCTTATTATC-ATTACT
26565985 CTTCAAATAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.26
21 8 0.42
22 6 0.32
ACGTcount: A:0.29, C:0.17, G:0.02, T:0.52
Consensus pattern (22 bp):
TACTATCTTATTATCATTACTA
Found at i:26572191 original size:50 final size:50
Alignment explanation
Indices: 26572025--26572365 Score: 489
Period size: 48 Copynumber: 6.9 Consensus size: 50
26572015 TTGATGCATA
*
26572025 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA-A-GTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
*
26572073 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG--A-A-ATATATATATG
* *
26572127 AGATATGTATATGTGGTAAAGCTGAATGGTTAATGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
*
26572177 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
**
26572225 AGATATGCGTATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTGAAATATATATATG
* * *
26572275 AGATATGTATATGTGGTAAAGTCGAATGGCTAGTGTG-AA-ATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
*
26572323 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
26572366 GTAGGCGATG
Statistics
Matches: 264, Mismatches: 17, Indels: 22
0.87 0.06 0.07
Matches are distributed among these distances:
47 1 0.00
48 121 0.46
49 8 0.03
50 88 0.33
51 3 0.01
52 4 0.02
53 1 0.00
54 38 0.14
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (50 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
Found at i:26572384 original size:98 final size:98
Alignment explanation
Indices: 26572025--26572365 Score: 508
Period size: 98 Copynumber: 3.4 Consensus size: 98
26572015 TTGATGCATA
*
26572025 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA-A-GTATGAGATATGTATATGTG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTG
* *
26572088 GTAAAGCCGAATGGCTAATGCGAAATATATATATATATG
66 GTAAAGCCGAATGGCTAATGTG----A-A-ATATGTATG
* *
26572127 AGATATGTATATGTGGTAAAGCTGAATGGTTAATGTGAAATATATATATGAGATATGTATATGTG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTG
26572192 GTAAAGCCGAATGGCTAATGTGAAATATGTATG
66 GTAAAGCCGAATGGCTAATGTGAAATATGTATG
**
26572225 AGATATGCGTATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTGAAATATATATATGAGATATGTATATGT
* *
26572289 GGTAAAGTCGAATGGCTAGTGTGAAATATGTATG
65 GGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
26572323 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
26572366 GTAGGCGATG
Statistics
Matches: 222, Mismatches: 13, Indels: 12
0.90 0.05 0.05
Matches are distributed among these distances:
97 1 0.00
98 137 0.62
99 2 0.01
100 1 0.00
102 40 0.18
103 1 0.00
104 40 0.18
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (98 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTG
GTAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:26572623 original size:37 final size:37
Alignment explanation
Indices: 26572515--26572623 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
26572505 GGAAATATAT
*
26572515 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
26572552 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
26572589 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
26572624 CATCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:26583965 original size:40 final size:40
Alignment explanation
Indices: 26583802--26584184 Score: 434
Period size: 40 Copynumber: 9.6 Consensus size: 40
26583792 TTGAATGCTG
* * * * * *
26583802 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
26583842 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
* * * * *
26583882 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
26583922 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
26583962 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
26584002 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
26584042 TCCGGGTTAAGTTCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
26584082 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
26584122 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
26584161 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
26584185 TGAACGAGGA
Statistics
Matches: 303, Mismatches: 33, Indels: 15
0.86 0.09 0.04
Matches are distributed among these distances:
39 43 0.14
40 244 0.81
41 16 0.05
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:26590337 original size:40 final size:40
Alignment explanation
Indices: 26590254--26590556 Score: 387
Period size: 40 Copynumber: 7.6 Consensus size: 40
26590244 TTGAATGCTG
* * * * * *
26590254 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
26590294 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
26590334 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
26590374 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
26590414 TCCGGGTTAAGTTCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
26590454 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
26590494 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * * *
26590533 ACCGGGCTATGTCCCAAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
26590557 TGAACGAGGA
Statistics
Matches: 238, Mismatches: 22, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 34 0.14
40 196 0.82
41 8 0.03
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:26592040 original size:49 final size:49
Alignment explanation
Indices: 26591986--26592084 Score: 155
Period size: 49 Copynumber: 2.0 Consensus size: 49
26591976 CAAGAAACAC
*
26591986 ATTTATCAAACATATCCC-ACCCAAAAAGTGACCAACATTTCTGAAAGAA
1 ATTTATCAAACATATCCCTACCC-AAAAGTGACAAACATTTCTGAAAGAA
* *
26592035 ATTTATCAAACATATCCCTTCCCAAAATTGACAAACATTTCTGAAAGAA
1 ATTTATCAAACATATCCCTACCCAAAAGTGACAAACATTTCTGAAAGAA
26592084 A
1 A
26592085 GTCGGATACA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
49 43 0.93
50 3 0.07
ACGTcount: A:0.44, C:0.23, G:0.07, T:0.25
Consensus pattern (49 bp):
ATTTATCAAACATATCCCTACCCAAAAGTGACAAACATTTCTGAAAGAA
Found at i:26594745 original size:18 final size:20
Alignment explanation
Indices: 26594700--26594736 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
26594690 AGAAGAATTA
*
26594700 TTATTCTAAGAAAATAAAAT
1 TTATACTAAGAAAATAAAAT
26594720 TTATACTAAG-AAATAAA
1 TTATACTAAGAAAATAAA
26594737 TTCTAACTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.57, C:0.05, G:0.05, T:0.32
Consensus pattern (20 bp):
TTATACTAAGAAAATAAAAT
Found at i:26596229 original size:19 final size:19
Alignment explanation
Indices: 26596205--26596248 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
26596195 TAAAAGCAAC
26596205 ACAACATCAACCCAAATAA
1 ACAACATCAACCCAAATAA
* **
26596224 ACAACATGATTCCAAATAA
1 ACAACATCAACCCAAATAA
26596243 ACAACA
1 ACAACA
26596249 AAAATAATAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.57, C:0.27, G:0.02, T:0.14
Consensus pattern (19 bp):
ACAACATCAACCCAAATAA
Found at i:26599085 original size:90 final size:91
Alignment explanation
Indices: 26598903--26599074 Score: 276
Period size: 90 Copynumber: 1.9 Consensus size: 91
26598893 TAGGTATAGC
* * *
26598903 AGCATAAATTAAACAAAAAAAAAGTATGTTAAACTACATTTTAAACTTTAAAGTTAGTTAATTGC
1 AGCATAAATTAAACAAAAAAAAAGTATGTTAAACTACAGTTTAAAATTTAAAGTTAGTTAATTGA
26598968 AGCCTAAATTAATATAATAGTACAAT
66 AGCCTAAATTAATATAATAGTACAAT
* *
26598994 AGCATAAATTAAAC-AAAAAAAAGTTTGTTAAGCTATC-GTTTAAAATTTAAAGTTAGTTAATTG
1 AGCATAAATTAAACAAAAAAAAAGTATGTTAAACTA-CAGTTTAAAATTTAAAGTTAGTTAATTG
26599057 AAGCCTAAATTAATATAA
65 AAGCCTAAATTAATATAA
26599075 ATATATAATA
Statistics
Matches: 75, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
90 60 0.80
91 15 0.20
ACGTcount: A:0.49, C:0.09, G:0.10, T:0.33
Consensus pattern (91 bp):
AGCATAAATTAAACAAAAAAAAAGTATGTTAAACTACAGTTTAAAATTTAAAGTTAGTTAATTGA
AGCCTAAATTAATATAATAGTACAAT
Found at i:26599099 original size:90 final size:89
Alignment explanation
Indices: 26598906--26599099 Score: 241
Period size: 90 Copynumber: 2.1 Consensus size: 89
26598896 GTATAGCAGC
* * * *
26598906 ATAAATTAAACAAAAAAAAAGTATGTTAAACTACATTTTAAACTTTAAAGTTAGTTAATTGCAGC
1 ATAAAGTAAAC-AAAAAAAAGTATGTTAAACTACAGTTTAAAATTTAAAGTTAGTTAATTGAAGC
26598971 CTAAATTAATATAATAGTACAATAG
65 CTAAATTAATATAATAGTACAATAG
* * *
26598996 CATAAATTAAACAAAAAAAAGTTTGTTAAGCTATC-GTTTAAAATTTAAAGTTAGTTAATTGAAG
1 -ATAAAGTAAACAAAAAAAAGTATGTTAAACTA-CAGTTTAAAATTTAAAGTTAGTTAATTGAAG
*
26599060 CCTAAATTAATATAAATA-TATAATAG
64 CCTAAATTAATAT-AATAGTACAATAG
26599086 -TACAAGTACAACAA
1 ATA-AAGTA-AACAA
26599100 CATAAATTAA
Statistics
Matches: 92, Mismatches: 7, Indels: 9
0.85 0.06 0.08
Matches are distributed among these distances:
88 2 0.02
89 4 0.04
90 70 0.76
91 16 0.17
ACGTcount: A:0.50, C:0.09, G:0.09, T:0.32
Consensus pattern (89 bp):
ATAAAGTAAACAAAAAAAAGTATGTTAAACTACAGTTTAAAATTTAAAGTTAGTTAATTGAAGCC
TAAATTAATATAATAGTACAATAG
Found at i:26599340 original size:17 final size:17
Alignment explanation
Indices: 26599318--26599350 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
26599308 TTTTCTCTAA
26599318 TAATATTACATTATTAC
1 TAATATTACATTATTAC
26599335 TAATATTACATTATTA
1 TAATATTACATTATTA
26599351 GTTTGGGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.48
Consensus pattern (17 bp):
TAATATTACATTATTAC
Found at i:26599996 original size:23 final size:21
Alignment explanation
Indices: 26599968--26600010 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 21
26599958 GGATTTGGGT
26599968 TTGGGCAAATAAGTCTTTGGGGC
1 TTGGGCAAATAAG-C-TTGGGGC
*
26599991 TTGGGCAGATAAGCTTGGGG
1 TTGGGCAAATAAGCTTGGGG
26600011 AAGTAGGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 6 0.32
22 1 0.05
23 12 0.63
ACGTcount: A:0.21, C:0.12, G:0.40, T:0.28
Consensus pattern (21 bp):
TTGGGCAAATAAGCTTGGGGC
Found at i:26603533 original size:3 final size:3
Alignment explanation
Indices: 26603527--26603559 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
26603517 ATAATAATAA
26603527 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
26603560 AGTTCATGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:26610381 original size:34 final size:34
Alignment explanation
Indices: 26610338--26610402 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 34
26610328 AAAGGCAGCC
26610338 AAAAAGAAAAACAAAAATACAAAA-AATAAAAAAG
1 AAAAAGAAAAACAAAAATA-AAAACAATAAAAAAG
* *
26610372 AAAAAGAAAAATAAGAATAAAAACAATAAAA
1 AAAAAGAAAAACAAAAATAAAAACAATAAAA
26610403 CAAATGTCAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 4 0.14
34 24 0.86
ACGTcount: A:0.82, C:0.05, G:0.06, T:0.08
Consensus pattern (34 bp):
AAAAAGAAAAACAAAAATAAAAACAATAAAAAAG
Found at i:26610949 original size:22 final size:21
Alignment explanation
Indices: 26610917--26610978 Score: 81
Period size: 22 Copynumber: 2.9 Consensus size: 21
26610907 TGAGAAAAAA
26610917 AATCAAAAAATTAAAAAAATC
1 AATCAAAAAATTAAAAAAATC
* *
26610938 AATCAAAAAAATCAAAAAAATT
1 AATC-AAAAAATTAAAAAAATC
26610960 AAT-AAAAAATTAATAAAAA
1 AATCAAAAAATTAA-AAAAA
26610979 GAGAAAAAGA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 9 0.25
21 9 0.25
22 18 0.50
ACGTcount: A:0.74, C:0.06, G:0.00, T:0.19
Consensus pattern (21 bp):
AATCAAAAAATTAAAAAAATC
Found at i:26612551 original size:44 final size:46
Alignment explanation
Indices: 26612503--26612605 Score: 108
Period size: 44 Copynumber: 2.3 Consensus size: 46
26612493 AGCCATCAGC
* ** *
26612503 CTTATCTCT-CTCAGGTAGCAA-GAGAGCAGGTTGAAGATTATAG-T
1 CTTATCTCTCCTAAGGTAGCAAGGA-AGCAGACTAAAGATTATAGAT
* *
26612547 CTTAT-TTTCCTAAGGTAGCAAGGAAGCAGACTAAAGATTGTAGAT
1 CTTATCTCTCCTAAGGTAGCAAGGAAGCAGACTAAAGATTATAGAT
26612592 CTTATCTC-CCTAAG
1 CTTATCTCTCCTAAG
26612606 TAGTAGTGGA
Statistics
Matches: 48, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
43 2 0.04
44 31 0.65
45 14 0.29
46 1 0.02
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.30
Consensus pattern (46 bp):
CTTATCTCTCCTAAGGTAGCAAGGAAGCAGACTAAAGATTATAGAT
Found at i:26612617 original size:177 final size:177
Alignment explanation
Indices: 26612243--26613502 Score: 1659
Period size: 177 Copynumber: 7.1 Consensus size: 177
26612233 TCAGACTTTG
* * * * * **
26612243 TCTCCCTAAATAGTAGTGGAGCAAATCGGAAG-CGACAAATCTTATCTTCCTAAGGTAGTAGGGG
1 TCTCCCTAAGTAGTAGTGGAGCAGATC-GAAGATGGCGAATCTTATCTTCCCGAGGTAGTAGGGG
* ** * * *
26612307 AGCAGATTTTAGCTATTAGCCTTATCTTTCTGAGGTAGTAAGAGAGTAGGTTGAAGA-TGTAGTC
65 AGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTC
* * ** * *
26612371 TTATCTTCCTAAGATAGCAATAAAGCAGACTGAGGATTGTAGATCTTA
130 TTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGATTGTAGATCTTA
* * * * *
26612419 TCTCCCTAAGCAGTAGTGGAGCAGA-CAGAATATGGCGAATCTTATCTTCCTGAGGTATTAAGGG
1 TCTCCCTAAGTAGTAGTGGAGCAGATC-GAAGATGGCGAATCTTATCTTCCCGAGGTAGTAGGGG
* * * *
26612483 AGTAGATTTTAGCCATCAGCCTTATCTCTCTCAGGTAGCAAGAGAGCAGGTTGAAGATTATAGTC
65 AGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTC
* *
26612548 TTATTTTCCTAAGGTAGCAAGGAAGCAGACTAAAGATTGTAGATCTTA
130 TTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGATTGTAGATCTTA
** * *
26612596 TCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTTCGATGTAGCAGGGGA
1 TCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCGAGGTAGTAGGGGA
* *
26612661 GCATATTTTAGCCACCAGTCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTCT
66 GCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTCT
* *
26612726 TATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTATAGATCTTA
131 TATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGATTGTAGATCTTA
* * * **
26612773 TCTCCCTAAGTAGTAGTGAAACAGATCGAAGATAGCGAATCTTATCTTCCCGAGGTAACAGGGGA
1 TCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCGAGGTAGTAGGGGA
*
26612838 GCAGATTTTAGCCACCAGCCTTATCTCTTTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTCT
66 GCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTCT
* * *
26612903 TATCTTCCTGAGGTAGCAAGGAAGCAGACTGATGATTTTAGATCTTA
131 TATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGATTGTAGATCTTA
* * * * * *
26612950 TCTCCCTAAGTAGTAGTGAAACAGATCAAAGATAGCGAATCTCATCTTCCCGAGGTAGTAGGGAA
1 TCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCGAGGTAGTAGGGGA
* *
26613015 GCAGATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGGAAGAGAGCAGGTTGAAGATTGTAGTCT
66 GCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTCT
*
26613080 TATCTTCCTGAGGTAACAAGGAAGCAGACTAAAGATTGTAGATCTTA
131 TATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGATTGTAGATCTTA
* *
26613127 TCTCCTTAAGTAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCGAGGTAGCAGGGGA
1 TCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCGAGGTAGTAGGGGA
* * * *
26613192 GCAGATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTAAAAATTGTAGTCA
66 GCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTCT
* *
26613257 TATCTTCCTGAGGTAGCAAAGAAGCAGACT-GAGAATTGTAGATCTTA
131 TATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAG-ATTGTAGATCTTA
* * * * *
26613304 TCTTCCTAAGCAGTAGTTGAGCAGATCGAAGACGGTGAATCTTATCTTCCCGAGGTAGTAGGGGA
1 TCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCGAGGTAGTAGGGGA
* * * * * * *** *
26613369 ACAGATTTTAGTCACTAGCCTTATCTC-CTTGAGGTAGCAAGGGAGAAAGCCAAAGATTTTAGTC
66 GCAGATTTTAGCCACCAGCCTTATCTCTC-TGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTC
* * * *
26613433 TTATCTTCCTAAGGTAGCAGGGAAGCAGA-TAGAAGGTTGAAGATCTTA
130 TTATCTTCCTGAGGTAGCAAGGAAGCAGACTA-AAGATTGTAGATCTTA
* *
26613481 TCTCCCTGAGTTTGTAGTGGAG
1 TCTCCCTAAG-TAGTAGTGGAG
26613503 TAGACTGAAA
Statistics
Matches: 963, Mismatches: 113, Indels: 14
0.88 0.10 0.01
Matches are distributed among these distances:
175 4 0.00
176 102 0.11
177 846 0.88
178 11 0.01
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (177 bp):
TCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCGAGGTAGTAGGGGA
GCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTCT
TATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGATTGTAGATCTTA
Found at i:26612725 original size:44 final size:45
Alignment explanation
Indices: 26612677--26613310 Score: 240
Period size: 44 Copynumber: 14.3 Consensus size: 45
26612667 TTTAGCCACC
*
26612677 AGTCTTATCTCT-CTGAGGTAGCAA-GAGAGCAGGTTGAAGATTGT
1 AGTCTTATCTCTCCTGAGGTAGCAAGGA-AGCAGATTGAAGATTGT
* *
26612721 AGTCTTATCT-TCCTGAGGTAGCAAGGAAGCAGACTGAAGATTAT
1 AGTCTTATCTCTCCTGAGGTAGCAAGGAAGCAGATTGAAGATTGT
* * * * * *
26612765 AGATCTTATCTC-CCT-AAGTAG-TAGTGAAACAGATCGAAGATAGCG
1 AG-TCTTATCTCTCCTGAGGTAGCAAG-GAAGCAGATTGAAGATTG-T
* * * * * ** *****
26612810 AATCTTATCT-TCCCGAGGTAACAGGGGAGCAGATTTTAGCCACC
1 AGTCTTATCTCTCCTGAGGTAGCAAGGAAGCAGATTGAAGATTGT
* * *
26612854 AGCCTTATCTCT-TTGAGGTAGCAA-GAGAGCAGGTTGAAGATTGT
1 AGTCTTATCTCTCCTGAGGTAGCAAGGA-AGCAGATTGAAGATTGT
* * *
26612898 AGTCTTATCT-TCCTGAGGTAGCAAGGAAGCAGACTGATGATTTT
1 AGTCTTATCTCTCCTGAGGTAGCAAGGAAGCAGATTGAAGATTGT
* * * ** * *
26612942 AGATCTTATCTC-CCT-AAGTAG-TAGTGAAACAGATCAAAGATAGCG
1 AG-TCTTATCTCTCCTGAGGTAGCAAG-GAAGCAGATTGAAGATTG-T
* * * * * ** *****
26612987 AATCTCATCT-TCCCGAGGTAGTAGGGAAGCAGATTTTAGCCACC
1 AGTCTTATCTCTCCTGAGGTAGCAAGGAAGCAGATTGAAGATTGT
* * * *
26613031 AGCCTTATCTCT-CTAAGGTAGGAA-GAGAGCAGGTTGAAGATTGT
1 AGTCTTATCTCTCCTGAGGTAGCAAGGA-AGCAGATTGAAGATTGT
* * *
26613075 AGTCTTATCT-TCCTGAGGTAACAAGGAAGCAGACTAAAGATTGT
1 AGTCTTATCTCTCCTGAGGTAGCAAGGAAGCAGATTGAAGATTGT
* * * * * * *
26613119 AGATCTTA--TCTCCTTAAGTAG-TAGTGGAGCAGATCGAAGATGGCG
1 AG-TCTTATCTCTCCTGAGGTAGCAAG-GAAGCAGATTGAAGATTG-T
* * * * ** *****
26613164 AATCTTATCT-TCCCGAGGTAGCAGGGGAGCAGATTTTAGCCACC
1 AGTCTTATCTCTCCTGAGGTAGCAAGGAAGCAGATTGAAGATTGT
* * * * *
26613208 AGCCTTATCTCT-CTAAGGTAGCAA-GAGAGCAGGTTAAAAATTGT
1 AGTCTTATCTCTCCTGAGGTAGCAAGGA-AGCAGATTGAAGATTGT
* * *
26613252 AGTCATATCT-TCCTGAGGTAGCAAAGAAGCAGACTG-AGAATTGT
1 AGTCTTATCTCTCCTGAGGTAGCAAGGAAGCAGATTGAAG-ATTGT
26613296 AGATCTTATCT-TCCT
1 AG-TCTTATCTCTCCT
26613311 AAGCAGTAGT
Statistics
Matches: 413, Mismatches: 140, Indels: 73
0.66 0.22 0.12
Matches are distributed among these distances:
43 16 0.04
44 292 0.71
45 101 0.24
46 4 0.01
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (45 bp):
AGTCTTATCTCTCCTGAGGTAGCAAGGAAGCAGATTGAAGATTGT
Found at i:26623077 original size:40 final size:40
Alignment explanation
Indices: 26623017--26623200 Score: 221
Period size: 40 Copynumber: 4.6 Consensus size: 40
26623007 TATTCGAATG
*
26623017 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * *
26623057 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * * *
26623097 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
* *
26623137 ATATCCGGGCTAAG-TCCCAAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
26623177 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
26623201 CTTGTGCGAG
Statistics
Matches: 124, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 1 0.01
40 120 0.97
41 3 0.02
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:26623150 original size:80 final size:80
Alignment explanation
Indices: 26623017--26623200 Score: 246
Period size: 80 Copynumber: 2.3 Consensus size: 80
26623007 TATTCGAATG
* * * *
26623017 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAG-TCCCAAAGGC
* *
26623081 ATTTGTGCGAGTTG-CT
65 ATTTATGCGAG-TGACC
* * *
26623097 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCAAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCAAAGGCA
*
26623162 TTTATGCTAGTGACC
66 TTTATGCGAGTGACC
26623177 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
26623201 CTTGTGCGAG
Statistics
Matches: 91, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
79 3 0.03
80 88 0.97
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCAAAGGCA
TTTATGCGAGTGACC
Found at i:26624856 original size:19 final size:19
Alignment explanation
Indices: 26624832--26624869 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
26624822 TTTGGCCTAT
26624832 TTTCTCCATT-TTTGGCTCG
1 TTTCT-CATTCTTTGGCTCG
26624851 TTTCTCATTCCTTTGGCTC
1 TTTCTCATT-CTTTGGCTC
26624870 TCCTATGCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.05, C:0.29, G:0.13, T:0.53
Consensus pattern (19 bp):
TTTCTCATTCTTTGGCTCG
Found at i:26628278 original size:121 final size:120
Alignment explanation
Indices: 26628084--26628306 Score: 313
Period size: 119 Copynumber: 1.9 Consensus size: 120
26628074 CACAATAACA
* * * *
26628084 ATGAGAATGAGAATAGAAATGTAATGGGTATGAGGTTTTCTTAATCTCAACTTAACACGGAATGT
1 ATGAGAATAAGAATAGAAATGTAATGGGTATGAGGTGTTCCTAATCTCAACTTAACACGAAATGT
*
26628149 ATGATAACTAACCT-AGAATGCAAATTAAATGATAGACATTGGCATGGTAATAGT
66 ATGATAACTAACCTAAGAATACAAATTAAATGATAGACATTGGCATGGTAATAGT
* * * ** * *
26628203 ATGAGAATAAGCATAGTAATGTCATGGGTATGAGGTGTTCCTAATAACTTGATTTAACATGAAAT
1 ATGAGAATAAGAATAGAAATGTAATGGGTATGAGGTGTTCCTAAT--CTCAACTTAACACGAAAT
26628268 GTATGATAACTAACCTAAGAATACAAATTAAATGATAGA
64 GTATGATAACTAACCTAAGAATACAAATTAAATGATAGA
26628307 AAAATGAAAA
Statistics
Matches: 89, Mismatches: 12, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
119 39 0.44
121 29 0.33
122 21 0.24
ACGTcount: A:0.41, C:0.10, G:0.20, T:0.30
Consensus pattern (120 bp):
ATGAGAATAAGAATAGAAATGTAATGGGTATGAGGTGTTCCTAATCTCAACTTAACACGAAATGT
ATGATAACTAACCTAAGAATACAAATTAAATGATAGACATTGGCATGGTAATAGT
Found at i:26631020 original size:40 final size:40
Alignment explanation
Indices: 26630941--26631158 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 40
26630931 AAACCAAGTA
* * *
26630941 CCTTCGGAATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
26630980 CCTTCGGGACTTAGCCCGGTTATAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
26631020 CCTTCGGGACTTAGCCCGGGA-ATAGTCACTCGTACAAATG
1 CCTTCGGGACTTAGCCC-GGATATAGTAACTCGCACAAATG
26631060 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
26631100 CCTTCGGGACTTAGCCCGGAAATAGTCACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
26631140 CCTTCGGGACTTGGCCCGG
1 CCTTCGGGACTTAGCCCGG
26631159 TTATCATTCG
Statistics
Matches: 161, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
39 16 0.10
40 143 0.89
41 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:26631073 original size:80 final size:80
Alignment explanation
Indices: 26630941--26631162 Score: 340
Period size: 80 Copynumber: 2.8 Consensus size: 80
26630931 AAACCAAGTA
* * * *
26630941 CCTTCGGAATTTAG-CCGGATATAG-CTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATA
1 CCTTCGGGACTTAGCCCGGAAATAGTC-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATA
26631004 ATAACTCGCACAAATG
65 ATAACTCGCACAAATG
* * * *
26631020 CCTTCGGGACTTAGCCCGGGAATAGTCACTCGTACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGAAATAGTCACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAA
26631085 TAACTCGCACAAATG
66 TAACTCGCACAAATG
*
26631100 CCTTCGGGACTTAGCCCGGAAATAGTCACTCGCACAAATGCCTTCGGGACTTGGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGAAATAGTCACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
26631163 CATTCGAATA
Statistics
Matches: 129, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
79 12 0.09
80 116 0.90
81 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGAAATAGTCACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAA
TAACTCGCACAAATG
Found at i:26643676 original size:41 final size:41
Alignment explanation
Indices: 26643619--26643703 Score: 161
Period size: 41 Copynumber: 2.1 Consensus size: 41
26643609 TATCTTGCAA
*
26643619 AGAAAGTTGTTGAAATCCATCTTCCATGACTACCAAATCCT
1 AGAAAGTTGTTGAAATCCATCTTCCATAACTACCAAATCCT
26643660 AGAAAGTTGTTGAAATCCATCTTCCATAACTACCAAATCCT
1 AGAAAGTTGTTGAAATCCATCTTCCATAACTACCAAATCCT
26643701 AGA
1 AGA
26643704 CCTGTCCCAA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.36, C:0.24, G:0.12, T:0.28
Consensus pattern (41 bp):
AGAAAGTTGTTGAAATCCATCTTCCATAACTACCAAATCCT
Found at i:26648213 original size:21 final size:22
Alignment explanation
Indices: 26648189--26648239 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 22
26648179 TTAATTATTA
26648189 AAATATAAAAA-TTATAAATAT
1 AAATATAAAAATTTATAAATAT
* *
26648210 AAATATAAAAATTTATATATTT
1 AAATATAAAAATTTATAAATAT
26648232 AAA-ATAAA
1 AAATATAAA
26648240 TTTCAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
21 16 0.59
22 11 0.41
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (22 bp):
AAATATAAAAATTTATAAATAT
Found at i:26648285 original size:33 final size:33
Alignment explanation
Indices: 26648201--26648291 Score: 89
Period size: 33 Copynumber: 2.7 Consensus size: 33
26648191 ATATAAAAAT
*
26648201 TATAAATA-TAAATATAAA-AATTTATATATTTAA
1 TATAAATATTAAATA-AAATAA-TTATATACTTAA
* *
26648234 AATAAAT-TTCAAAAAAAATAATTATATACTTAA
1 TATAAATATT-AAATAAAATAATTATATACTTAA
*
26648267 TATAAATATTACATAAAATATATTA
1 TATAAATATTAAATAAAATA-ATTA
26648292 GAGTATAAAT
Statistics
Matches: 47, Mismatches: 6, Indels: 9
0.76 0.10 0.15
Matches are distributed among these distances:
33 35 0.74
34 12 0.26
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.38
Consensus pattern (33 bp):
TATAAATATTAAATAAAATAATTATATACTTAA
Found at i:26663252 original size:119 final size:119
Alignment explanation
Indices: 26663041--26663279 Score: 478
Period size: 119 Copynumber: 2.0 Consensus size: 119
26663031 GCCTCTGTCC
26663041 CTTGAGTCATTTCACTCTCAGTAGTTGTTCCAATGGTAGAACTTTCTATCTCCGTTTGCTTGTTG
1 CTTGAGTCATTTCACTCTCAGTAGTTGTTCCAATGGTAGAACTTTCTATCTCCGTTTGCTTGTTG
26663106 GATCTCTTATTTCCAGTGAAGACTATTTTAACCATGGTGTTACTGGATATTTAA
66 GATCTCTTATTTCCAGTGAAGACTATTTTAACCATGGTGTTACTGGATATTTAA
26663160 CTTGAGTCATTTCACTCTCAGTAGTTGTTCCAATGGTAGAACTTTCTATCTCCGTTTGCTTGTTG
1 CTTGAGTCATTTCACTCTCAGTAGTTGTTCCAATGGTAGAACTTTCTATCTCCGTTTGCTTGTTG
26663225 GATCTCTTATTTCCAGTGAAGACTATTTTAACCATGGTGTTACTGGATATTTAA
66 GATCTCTTATTTCCAGTGAAGACTATTTTAACCATGGTGTTACTGGATATTTAA
26663279 C
1 C
26663280 CTAGCTTTGA
Statistics
Matches: 120, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
119 120 1.00
ACGTcount: A:0.22, C:0.19, G:0.18, T:0.42
Consensus pattern (119 bp):
CTTGAGTCATTTCACTCTCAGTAGTTGTTCCAATGGTAGAACTTTCTATCTCCGTTTGCTTGTTG
GATCTCTTATTTCCAGTGAAGACTATTTTAACCATGGTGTTACTGGATATTTAA
Found at i:26665320 original size:26 final size:26
Alignment explanation
Indices: 26665273--26665341 Score: 66
Period size: 26 Copynumber: 2.7 Consensus size: 26
26665263 TCTCATCCCT
* ** *
26665273 ATTTTACCCCTAACAAAATTTTGAAA
1 ATTTTACCCTTAGTAAATTTTTGAAA
* **
26665299 ATTTTATCCTTAGTAAATTTTTGACG
1 ATTTTACCCTTAGTAAATTTTTGAAA
*
26665325 ATTTTACCCTTGGTAAA
1 ATTTTACCCTTAGTAAA
26665342 ATTTCAAGAA
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.33, C:0.16, G:0.09, T:0.42
Consensus pattern (26 bp):
ATTTTACCCTTAGTAAATTTTTGAAA
Found at i:26671249 original size:25 final size:25
Alignment explanation
Indices: 26671221--26671268 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
26671211 AAGTTTAAAA
26671221 TGAAAATACTGGAGATAGTATATTT
1 TGAAAATACTGGAGATAGTATATTT
* * * *
26671246 TGAAACTATTGTAGGTAGTATAT
1 TGAAAATACTGGAGATAGTATAT
26671269 GGTGAAAACA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.38, C:0.04, G:0.21, T:0.38
Consensus pattern (25 bp):
TGAAAATACTGGAGATAGTATATTT
Found at i:26676366 original size:22 final size:22
Alignment explanation
Indices: 26676341--26676383 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
26676331 TCCCATATCT
*
26676341 TTTTATT-TTTGTTTTCAAAATA
1 TTTTATTCTTT-TTTTAAAAATA
*
26676363 TTTTCTTCTTTTTTTAAAAAT
1 TTTTATTCTTTTTTTAAAAAT
26676384 TCCCAAGGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.26, C:0.07, G:0.02, T:0.65
Consensus pattern (22 bp):
TTTTATTCTTTTTTTAAAAATA
Found at i:26678429 original size:12 final size:12
Alignment explanation
Indices: 26678412--26678441 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
26678402 CTCCAATTTT
26678412 CACACGACCTAG
1 CACACGACCTAG
*
26678424 CACACGACCTGG
1 CACACGACCTAG
26678436 CACACG
1 CACACG
26678442 GGCGTGTGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.30, C:0.43, G:0.20, T:0.07
Consensus pattern (12 bp):
CACACGACCTAG
Found at i:26682341 original size:43 final size:44
Alignment explanation
Indices: 26682292--26682448 Score: 187
Period size: 43 Copynumber: 3.6 Consensus size: 44
26682282 GATTGTTGGG
*
26682292 ATGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCGTAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
26682336 -TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGT-T
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * * * * * *
26682378 ATATGATTTA-GTGTAAGACCCTATTTGGGACAGTGGCATTG-AT
1 ATGTGA-TTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* *
26682421 ATGTGATAACATGTAAGACCATATCTGG
1 ATGTGATTACATGTAAGACCATGTCTGG
26682449 TATATGGCAT
Statistics
Matches: 96, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
42 3 0.03
43 90 0.94
44 3 0.03
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (44 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
Found at i:26684568 original size:56 final size:56
Alignment explanation
Indices: 26684482--26684601 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
26684472 ACAAGGGATG
26684482 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
26684538 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
26684594 ATGGGCAA
1 ATGGGCAA
26684602 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:26685438 original size:40 final size:40
Alignment explanation
Indices: 26685354--26685578 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
26685344 TCGAATGATG
* * * * *
26685354 TCCGGGCTAAGTCCCGAAGG-TTTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
26685394 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26685434 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26685473 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26685513 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
26685554 -CTGGGCTATGTCCCAAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26685579 AACGAGTAGC
Statistics
Matches: 162, Mismatches: 18, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
39 34 0.21
40 118 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26685585 original size:80 final size:79
Alignment explanation
Indices: 26685393--26685611 Score: 239
Period size: 79 Copynumber: 2.8 Consensus size: 79
26685383 AAGTGACCAT
* * * *
26685393 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CCCGAAGGCAT
1 ATCCGGGCTAAG-TCCCAAAGGCATTTGTGCGAG-TACTAAATCCGGGTTAAGTCCCGAAGGCAT
26685456 TGGTGCGAGTTACTAA
64 TGGTGCGAGTTACTAA
* *
26685472 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCAAAGGCATTTGTGCGAG-TACTAAATCCGGGTTAAGTCCCGAAGGCATT
*
26685537 TGTGCGAGTTACTATA
65 GGTGCGAGTTACTA-A
* * ** * * *
26685553 A-CTGGGCTATGTCCCAAAGGCATTTGAACGAGTAGCTATATCC-GGTTAAATTCCGAAGG
1 ATCCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTA-CTAAATCCGGGTTAAGTCCCGAAGG
26685612 TACGTGATTT
Statistics
Matches: 121, Mismatches: 15, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
78 1 0.01
79 61 0.50
80 57 0.47
81 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
ATCCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTACTAAATCCGGGTTAAGTCCCGAAGGCATTG
GTGCGAGTTACTAA
Found at i:26692523 original size:39 final size:40
Alignment explanation
Indices: 26692479--26692647 Score: 180
Period size: 39 Copynumber: 4.3 Consensus size: 40
26692469 TCCTCGTTCA
* * * *
26692479 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACG
* * * *
26692518 CATGCCTTCGGGACGTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACG
* *
26692558 AATGCCTTC-GAACTTAACCCGGCTTTAATAACTCACACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACG
* * * * *
26692597 AATGCCCTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACG
*
26692637 AAGGCCTTCGG
1 AATGCCTTCGG
26692648 ATCTTAGTCC
Statistics
Matches: 106, Mismatches: 22, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
39 65 0.61
40 41 0.39
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACG
Found at i:26692608 original size:79 final size:79
Alignment explanation
Indices: 26692479--26692648 Score: 207
Period size: 79 Copynumber: 2.2 Consensus size: 79
26692469 TCCTCGTTCA
* * * * * *
26692479 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACCATGCCTTCGGGACGTAACCCGGATT
1 AATGCCTTCGGAACATAACCCGGCTTTAATAACTCACACAATGCCCTCGGGACGTAACCCGGATT
26692544 TAACAACTCGCACG
66 TAACAACTCGCACG
* *
26692558 AATGCCTTC-GAACTTAACCCGGCTTTAATAACTCACACGAATGCCCTCGGGACTTAACCCGGAT
1 AATGCCTTCGGAACATAACCCGGCTTTAATAACTCACAC-AATGCCCTCGGGACGTAACCCGGAT
** * *
26692622 TTAGTATCTCGCACA
65 TTAACAACTCGCACG
*
26692637 AAGGCCTTCGGA
1 AATGCCTTCGGA
26692649 TCTTAGTCCG
Statistics
Matches: 76, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
78 24 0.32
79 50 0.66
80 2 0.03
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (79 bp):
AATGCCTTCGGAACATAACCCGGCTTTAATAACTCACACAATGCCCTCGGGACGTAACCCGGATT
TAACAACTCGCACG
Found at i:26694306 original size:43 final size:41
Alignment explanation
Indices: 26694256--26694432 Score: 160
Period size: 43 Copynumber: 4.2 Consensus size: 41
26694246 ATAGCATTTC
26694256 TGATATGTGTTCTTGTGTAAGACCACGTCTGGGACATTGGCAT
1 TGATATGTGTTC--GTGTAAGACCACGTCTGGGACATTGGCAT
* * *
26694299 CGATATGTGGTTACGTGTAAGACCAAGTTCTTGGACATTGGCAT
1 TGATATGT-GTT-CGTGTAAGACCACG-TCTGGGACATTGGCAT
* ** **
26694343 TG-TATTTGATTCGTGTAAGACCTTGTCTGGGACGGTGGCAT
1 TGATATGTG-TTCGTGTAAGACCACGTCTGGGACATTGGCAT
* * * *
26694384 TGATATGTGATGGCATGTAAAACCACGTCTGGGACGTTGGCAT
1 TGATATGTG-T-TCGTGTAAGACCACGTCTGGGACATTGGCAT
26694427 TG-TATG
1 TGATATG
26694433 ATATGTGTGC
Statistics
Matches: 111, Mismatches: 17, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
41 15 0.14
42 24 0.22
43 52 0.47
44 19 0.17
45 1 0.01
ACGTcount: A:0.22, C:0.15, G:0.29, T:0.33
Consensus pattern (41 bp):
TGATATGTGTTCGTGTAAGACCACGTCTGGGACATTGGCAT
Found at i:26709123 original size:24 final size:24
Alignment explanation
Indices: 26709086--26709239 Score: 227
Period size: 24 Copynumber: 6.4 Consensus size: 24
26709076 CTGGAGGTCT
*
26709086 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
* *
26709111 AGCCCTTTTAATAATTGGGGTATA
1 AGCCCTTTTAATAACTGGGGCATA
*
26709135 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* **
26709159 AGCCCTTTTAATCACTATGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
26709183 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
26709207 AGCCCTTTTAATCACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
26709231 AGCCCTTTT
1 AGCCCTTTT
26709240 GCACTTCCTC
Statistics
Matches: 115, Mismatches: 14, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
24 111 0.97
25 4 0.03
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.32
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:26709320 original size:11 final size:11
Alignment explanation
Indices: 26709289--26709346 Score: 61
Period size: 11 Copynumber: 5.6 Consensus size: 11
26709279 TTATGAATAC
26709289 ATCATGTGCAT
1 ATCATGTGCAT
*
26709300 ATCA--TACAT
1 ATCATGTGCAT
26709309 ATCATGTGCAT
1 ATCATGTGCAT
*
26709320 ATCA--TACAT
1 ATCATGTGCAT
*
26709329 GTCATGTGCAT
1 ATCATGTGCAT
26709340 ATCATGT
1 ATCATGT
26709347 ATACCATGTT
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
9 15 0.41
11 22 0.59
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:26709355 original size:20 final size:20
Alignment explanation
Indices: 26709289--26709344 Score: 103
Period size: 20 Copynumber: 2.8 Consensus size: 20
26709279 TTATGAATAC
26709289 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
26709309 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
26709329 GTCATGTGCATATCAT
1 ATCATGTGCATATCAT
26709345 GTATACCATG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:26712303 original size:48 final size:49
Alignment explanation
Indices: 26712230--26712350 Score: 140
Period size: 48 Copynumber: 2.5 Consensus size: 49
26712220 GCCGTATACT
**
26712230 AGATATGGTCTTACA-TGAAATCACATACCAA-GACCGACGCCATATCCC
1 AGATATGGTCTTACACTGGCATCACATACCAATG-CCGACGCCATATCCC
* * *
26712278 AGATATGGTCTTACACTGGCA-CACATATCAATGCCGATGCCATGTCCC
1 AGATATGGTCTTACACTGGCATCACATACCAATGCCGACGCCATATCCC
* *
26712326 AAACATGGTCTTACACTGGCTATCA
1 AGATATGGTCTTACACTGGC-ATCA
26712351 TATCAACGTT
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
48 55 0.89
49 5 0.08
50 2 0.03
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (49 bp):
AGATATGGTCTTACACTGGCATCACATACCAATGCCGACGCCATATCCC
Found at i:26712353 original size:48 final size:49
Alignment explanation
Indices: 26712263--26712394 Score: 160
Period size: 48 Copynumber: 2.7 Consensus size: 49
26712253 CATACCAAGA
* * * *
26712263 CCGACGCCATATCCCAGATATGGTCTTACACTGGC-ACACATATCAATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTACACATATCAACG
* *
26712311 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTA-TCATATCAACG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTACACATATCAACG
** * *
26712359 TTGATACCATGTCCCAGACATGGCCTTACACTGGCT
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCT
26712395 CTCACTAATC
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
48 71 0.99
49 1 0.01
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.25
Consensus pattern (49 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTACACATATCAACG
Found at i:26719943 original size:56 final size:55
Alignment explanation
Indices: 26719883--26719987 Score: 133
Period size: 55 Copynumber: 1.9 Consensus size: 55
26719873 GTAGGGTATA
* *
26719883 CTGACTTATGCAACATGGCCA-AGTCACAAGCCCGTGTGCT-AGGCCATGTGCCATTT
1 CTGACTTATACAACATGG-CAGA-TCACAAGCCCATGTG-TGAGGCCATGTGCCATTT
* *
26719939 CTGACTTATACCACATGGCAGATCACATGCCCATGTGTGAGGCCATGTG
1 CTGACTTATACAACATGGCAGATCACAAGCCCATGTGTGAGGCCATGTG
26719988 GAGCATACTG
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
54 1 0.02
55 25 0.58
56 17 0.40
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (55 bp):
CTGACTTATACAACATGGCAGATCACAAGCCCATGTGTGAGGCCATGTGCCATTT
Found at i:26719999 original size:56 final size:55
Alignment explanation
Indices: 26719880--26720001 Score: 124
Period size: 56 Copynumber: 2.2 Consensus size: 55
26719870 ACTGTAGGGT
* *
26719880 ATACTGACTTATGCAACATGGCCAAGTCACAAGCCCGTGTGCTAGGCCATGTGCC
1 ATACTGACTTATACAACATGGCCAAGTCACAAGCCCATGTGCTAGGCCATGTGCC
* * * *
26719935 ATTTCTGACTTATACCACATGG-C-AGATCACATGCCCATGTG-TGAGGCCATGTGGAGC
1 A-TACTGACTTATACAACATGGCCAAG-TCACAAGCCCATGTGCT-AGGCCATGT-G-CC
26719992 ATACTGACTT
1 ATACTGACTT
26720002 CAATTCCATT
Statistics
Matches: 55, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
54 3 0.05
55 24 0.44
56 26 0.47
57 2 0.04
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (55 bp):
ATACTGACTTATACAACATGGCCAAGTCACAAGCCCATGTGCTAGGCCATGTGCC
Found at i:26721018 original size:23 final size:23
Alignment explanation
Indices: 26720964--26721117 Score: 125
Period size: 23 Copynumber: 6.6 Consensus size: 23
26720954 TCGAGCCATG
*
26720964 AACAGTAAGCTCCTCTTGAGCT-A
1 AACAGTAAGCT-CTATTGAGCTGA
* *
26720987 ATGATCAGTAAACTCTATTGAACTGA
1 A--A-CAGTAAGCTCTATTGAGCTGA
*
26721013 AACAGTAAGCTCTATTGAGCTAA
1 AACAGTAAGCTCTATTGAGCTGA
* *
26721036 AACGGTAAGCTCTATCGAGCTG-
1 AACAGTAAGCTCTATTGAGCTGA
* * * *
26721058 AAGAGTAACCTC-ATACGAGCTAA
1 AACAGTAAGCTCTAT-TGAGCTGA
* *
26721081 AACGGTAAGCTCTAATGAGCTGAA
1 AACAGTAAGCTCTATTGAGCTG-A
26721105 AACAGTAAGCTCT
1 AACAGTAAGCTCT
26721118 TACGAGCTGG
Statistics
Matches: 103, Mismatches: 20, Indels: 15
0.75 0.14 0.11
Matches are distributed among these distances:
21 2 0.02
22 15 0.15
23 52 0.50
24 15 0.15
25 9 0.09
26 10 0.10
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.24
Consensus pattern (23 bp):
AACAGTAAGCTCTATTGAGCTGA
Found at i:26723312 original size:43 final size:43
Alignment explanation
Indices: 26723263--26723368 Score: 113
Period size: 43 Copynumber: 2.5 Consensus size: 43
26723253 TCCCATATAT
* ** * * *
26723263 GGTCTTACATGTTATCACATATTGATGCCACTGTCCTAGACAG
1 GGTCTTACATGTAATCACATAACGATGCCAATGTCCCAAACAG
* * * * *
26723306 GGTCTTACACGAAATCATATAACGATGCTAATGTCCCAAACAT
1 GGTCTTACATGTAATCACATAACGATGCCAATGTCCCAAACAG
26723349 GGTCTTACATGTAATCACAT
1 GGTCTTACATGTAATCACAT
26723369 CTCAATAACC
Statistics
Matches: 49, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
43 49 1.00
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (43 bp):
GGTCTTACATGTAATCACATAACGATGCCAATGTCCCAAACAG
Found at i:26735831 original size:121 final size:121
Alignment explanation
Indices: 26735617--26735979 Score: 717
Period size: 121 Copynumber: 3.0 Consensus size: 121
26735607 CTAAGATCTA
*
26735617 GTAAAGCTTACTCGTGTCATTTCTTTAATTTATTTGTAGATTACATTTTGTAGAAATCGGGCGAT
1 GTAAAGCTTACTCGTGTCATTTCTTTAATTTCTTTGTAGATTACATTTTGTAGAAATCGGGCGAT
26735682 TGGATCAACTCGAAGAATCACACTCTCTAAAGATATTTTGGTAGTTTTTGAATTTT
66 TGGATCAACTCGAAGAATCACACTCTCTAAAGATATTTTGGTAGTTTTTGAATTTT
26735738 GTAAAGCTTACTCGTGTCATTTCTTTAATTTCTTTGTAGATTACATTTTGTAGAAATCGGGCGAT
1 GTAAAGCTTACTCGTGTCATTTCTTTAATTTCTTTGTAGATTACATTTTGTAGAAATCGGGCGAT
26735803 TGGATCAACTCGAAGAATCACACTCTCTAAAGATATTTTGGTAGTTTTTGAATTTT
66 TGGATCAACTCGAAGAATCACACTCTCTAAAGATATTTTGGTAGTTTTTGAATTTT
26735859 GTAAAGCTTACTCGTGTCATTTCTTTAATTTCTTTGTAGATTACATTTTGTAGAAATCGGGCGAT
1 GTAAAGCTTACTCGTGTCATTTCTTTAATTTCTTTGTAGATTACATTTTGTAGAAATCGGGCGAT
26735924 TGGATCAACTCGAAGAATCACACTCTCTAAAGATATTTTGGTAGTTTTTGAATTTT
66 TGGATCAACTCGAAGAATCACACTCTCTAAAGATATTTTGGTAGTTTTTGAATTTT
26735980 TTCTTTTGGG
Statistics
Matches: 241, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
121 241 1.00
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (121 bp):
GTAAAGCTTACTCGTGTCATTTCTTTAATTTCTTTGTAGATTACATTTTGTAGAAATCGGGCGAT
TGGATCAACTCGAAGAATCACACTCTCTAAAGATATTTTGGTAGTTTTTGAATTTT
Found at i:26737913 original size:40 final size:40
Alignment explanation
Indices: 26737858--26737974 Score: 191
Period size: 40 Copynumber: 3.0 Consensus size: 40
26737848 CTGGAAAAAA
26737858 TATAACC-GGTTAAGTCCCGAAGGCATTAGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTAGTGCGGGTTAT
* *
26737897 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGTGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTAGTGCGGGTTAT
* *
26737937 TATAACCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTAGTGCGGGTT
26737975 GTTACATCCG
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
39 7 0.10
40 65 0.90
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTAGTGCGGGTTAT
Found at i:26739882 original size:49 final size:49
Alignment explanation
Indices: 26739708--26740117 Score: 660
Period size: 49 Copynumber: 8.6 Consensus size: 49
26739698 CCCTTCGGGA
* * * * *
26739708 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
26739755 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26739802 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26739849 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26739898 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26739947 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCACTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26739994 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26740043 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26740092 CTTATCACATATATATACA--TTCACAT
1 CTTATCACATATATATACACTTTCACAT
26740118 CACAATTATC
Statistics
Matches: 343, Mismatches: 14, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 141 0.41
49 201 0.59
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26739905 original size:96 final size:94
Alignment explanation
Indices: 26739708--26740117 Score: 631
Period size: 96 Copynumber: 4.3 Consensus size: 94
26739698 CCCTTCGGGA
* * * * * * * *
26739708 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
26739773 TTTCACATTCATCACATCGGCTATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
26739802 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
26739867 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
26739898 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
26739963 ACTTTCACATTCATCACATCGGCCACTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
26739994 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
*
26740059 ACACTTTCACATTCATCACATCGGCCATTCGGC
62 ACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26740092 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
26740118 CACAATTATC
Statistics
Matches: 296, Mismatches: 14, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
94 47 0.16
96 157 0.53
98 92 0.31
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:26739980 original size:145 final size:145
Alignment explanation
Indices: 26739708--26740117 Score: 684
Period size: 145 Copynumber: 2.9 Consensus size: 145
26739698 CCCTTCGGGA
* * * * * * *
26739708 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
26739769 ACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCA
66 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
*
26739834 CATCGGCCATTAGGC
131 CATCGGCCACTAGGC
26739849 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
26739914 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
66 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
26739979 CATCGGCCACTAGGC
131 CATCGGCCACTAGGC
26739994 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
* * *
26740059 ACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATATACATTCACAT
66 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
26740118 CACAATTATC
Statistics
Matches: 253, Mismatches: 12, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
141 10 0.04
142 1 0.00
143 37 0.15
145 205 0.81
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (145 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
CATCGGCCACTAGGC
Done.