Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 81 of 344
Found at i:26743495 original size:40 final size:40
Alignment explanation
Indices: 26743438--26743718 Score: 359
Period size: 40 Copynumber: 7.0 Consensus size: 40
26743428 CGAATACACG
* * * * *
26743438 TCACCAGCATGATTGCTCTTCGGGACCTAGCCTGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * * ** *
26743478 ACACCAGCACGAATGCTCTTCGAGG-TTTAGCATGGATATA
1 TCACTAGCATGAATGCTCTTCG-GGACTTAGCCCGGATACA
* * * *
26743518 TTACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATAAA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
26743558 TCACTAGCATGAATGCTCTTCGGGACTTAGTCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
26743598 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGGTACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
26743638 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGGTACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
26743678 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT-CA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
26743717 TC
1 TC
26743719 GTCGAGACCT
Statistics
Matches: 215, Mismatches: 24, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
39 5 0.02
40 208 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:26758919 original size:15 final size:15
Alignment explanation
Indices: 26758899--26758930 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
26758889 TATCCATGCA
*
26758899 AAATATAAAATACAT
1 AAATATAAAAGACAT
26758914 AAATATAAAAGACAT
1 AAATATAAAAGACAT
26758929 AA
1 AA
26758931 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.06, G:0.03, T:0.22
Consensus pattern (15 bp):
AAATATAAAAGACAT
Found at i:26765706 original size:31 final size:31
Alignment explanation
Indices: 26765671--26765739 Score: 129
Period size: 31 Copynumber: 2.2 Consensus size: 31
26765661 TAAGACACTA
26765671 ATACTTATGCTCTATTACCCATTAACAGATT
1 ATACTTATGCTCTATTACCCATTAACAGATT
26765702 ATACTTATGCTCTATTACCCATTAACAGATT
1 ATACTTATGCTCTATTACCCATTAACAGATT
*
26765733 ATGCTTA
1 ATACTTA
26765740 CTTGTATACT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.32, C:0.22, G:0.07, T:0.39
Consensus pattern (31 bp):
ATACTTATGCTCTATTACCCATTAACAGATT
Found at i:26770853 original size:42 final size:42
Alignment explanation
Indices: 26770805--26770898 Score: 152
Period size: 42 Copynumber: 2.2 Consensus size: 42
26770795 GTGTGTCCTA
26770805 GCCATGTGAAGGACACGGGCCTGTGACACGGACGTGTTCCAG
1 GCCATGTGAAGGACACGGGCCTGTGACACGGACGTGTTCCAG
* * **
26770847 GCCATGTGAAGGACACGTGCTTGTGACACGGGTGTGTTCCAG
1 GCCATGTGAAGGACACGGGCCTGTGACACGGACGTGTTCCAG
26770889 GCCATGTGAA
1 GCCATGTGAA
26770899 AACCTCTATA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.21, C:0.23, G:0.35, T:0.20
Consensus pattern (42 bp):
GCCATGTGAAGGACACGGGCCTGTGACACGGACGTGTTCCAG
Found at i:26773462 original size:40 final size:40
Alignment explanation
Indices: 26773407--26773630 Score: 279
Period size: 40 Copynumber: 5.5 Consensus size: 40
26773397 TATTCGGATG
*
26773407 ATATCCGGGCTAAGTCCCAAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
26773447 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
26773490 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * ** * *
26773530 CTATCCGGGCTAAGTCCGGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
26773570 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
26773610 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
26773631 ATACTTGGGT
Statistics
Matches: 160, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
39 13 0.08
40 109 0.68
41 1 0.01
43 37 0.23
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:26773552 original size:83 final size:80
Alignment explanation
Indices: 26773411--26773630 Score: 275
Period size: 83 Copynumber: 2.7 Consensus size: 80
26773401 CGGATGATAT
* * **
26773411 CCGGGCTAAGTCCCAAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
26773476 TGCGAGTAGTTG-CTATAC
66 TGC---TAG-TGACTATAC
* * *
26773494 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTCTATCCGGGCTAAGTCCGGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
*
26773559 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* * *
26773574 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
26773631 ATACTTGGGT
Statistics
Matches: 122, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
79 15 0.12
80 44 0.36
81 2 0.02
83 61 0.50
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
TGCTAGTGACTATAC
Found at i:26781620 original size:31 final size:29
Alignment explanation
Indices: 26781557--26781620 Score: 83
Period size: 29 Copynumber: 2.1 Consensus size: 29
26781547 AAATCAAATT
**
26781557 TTCATGTATAAAATTGCACAAAATTAAAG
1 TTCATGTATAAAATTGCACAAAACAAAAG
*
26781586 TTCATGTATAAAATTGTACATTAAACAAAAG
1 TTCATGTATAAAATTGCACA--AAACAAAAG
26781617 TTCA
1 TTCA
26781621 ATATAATTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
29 19 0.63
31 11 0.37
ACGTcount: A:0.47, C:0.11, G:0.09, T:0.33
Consensus pattern (29 bp):
TTCATGTATAAAATTGCACAAAACAAAAG
Found at i:26781721 original size:14 final size:14
Alignment explanation
Indices: 26781682--26781713 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
26781672 ATACTGAAAA
*
26781682 TTTTAATATTTAAT
1 TTTTAACATTTAAT
26781696 TTTTAACATTTAAT
1 TTTTAACATTTAAT
26781710 TTTT
1 TTTT
26781714 TTAATTTATC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (14 bp):
TTTTAACATTTAAT
Found at i:26783304 original size:15 final size:15
Alignment explanation
Indices: 26783286--26783316 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
26783276 AATGCTCCAA
26783286 TTGAATCTTCATGTG
1 TTGAATCTTCATGTG
26783301 TTGAATCTTCATGTG
1 TTGAATCTTCATGTG
26783316 T
1 T
26783317 AGCTTTCCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.13, G:0.19, T:0.48
Consensus pattern (15 bp):
TTGAATCTTCATGTG
Found at i:26794048 original size:26 final size:26
Alignment explanation
Indices: 26794014--26794065 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26794004 TAATAAGCTT
* *
26794014 TTATTAAAATC-GATTATGAATAATAA
1 TTATAAAAATCTGAATATGAA-AATAA
26794040 TTATAAAAATCTGAATATGAAAATAA
1 TTATAAAAATCTGAATATGAAAATAA
26794066 AAACCAATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 15 0.65
27 8 0.35
ACGTcount: A:0.54, C:0.04, G:0.08, T:0.35
Consensus pattern (26 bp):
TTATAAAAATCTGAATATGAAAATAA
Found at i:26800734 original size:43 final size:42
Alignment explanation
Indices: 26800641--26800750 Score: 127
Period size: 43 Copynumber: 2.6 Consensus size: 42
26800631 GATTTGAGAT
* * *
26800641 TTACGTGTAAGA-CCATGTCTGGGACATCGGCATCATATTTGA
1 TTACATGTAAGATCC-TGTCTGGGATATCGGCACCATATTTGA
*
26800683 TTCCATGTAAGATCCTGTCTGGGATAGT-GGCACCGATATTTGA
1 TTACATGTAAGATCCTGTCTGGGATA-TCGGCACC-ATATTTGA
26800726 TTACATGTAAGATCAC-GTCTGGGAT
1 TTACATGTAAGATC-CTGTCTGGGAT
26800751 GTTGTCATTG
Statistics
Matches: 59, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
42 25 0.42
43 33 0.56
44 1 0.02
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (42 bp):
TTACATGTAAGATCCTGTCTGGGATATCGGCACCATATTTGA
Found at i:26816698 original size:27 final size:27
Alignment explanation
Indices: 26816652--26816715 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
26816642 TTTCTCCATG
*
26816652 AAGGCGTTCTTTTGCAGAGATAACCACA
1 AAGGC-TTCCTTTGCAGAGATAACCACA
* **
26816680 AAGGCTTCCTTTGTAGAGATTGCCACA
1 AAGGCTTCCTTTGCAGAGATAACCACA
26816707 AAGGCTTCC
1 AAGGCTTCC
26816716 ATTTCTCTGA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
27 27 0.84
28 5 0.16
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (27 bp):
AAGGCTTCCTTTGCAGAGATAACCACA
Found at i:26823444 original size:27 final size:27
Alignment explanation
Indices: 26823414--26823466 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
26823404 GTTTGGTGTT
26823414 ACCAACCATGACACAATTTTTGATATA
1 ACCAACCATGACACAATTTTTGATATA
** * *
26823441 ACCAAGTATGACACATTTTTTTATAT
1 ACCAACCATGACACAATTTTTGATAT
26823467 TTTATATATT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.38, C:0.19, G:0.08, T:0.36
Consensus pattern (27 bp):
ACCAACCATGACACAATTTTTGATATA
Found at i:26828795 original size:40 final size:40
Alignment explanation
Indices: 26828704--26828782 Score: 158
Period size: 40 Copynumber: 2.0 Consensus size: 40
26828694 GGTTGGAAGT
26828704 TAAATGAGACTACTTTGCAAAGTCAATTCATGAAATTGTA
1 TAAATGAGACTACTTTGCAAAGTCAATTCATGAAATTGTA
26828744 TAAATGAGACTACTTTGCAAAGTCAATTCATGAAATTGT
1 TAAATGAGACTACTTTGCAAAGTCAATTCATGAAATTGT
26828783 TCATTAGGGA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.33
Consensus pattern (40 bp):
TAAATGAGACTACTTTGCAAAGTCAATTCATGAAATTGTA
Found at i:26840282 original size:82 final size:81
Alignment explanation
Indices: 26840166--26840316 Score: 214
Period size: 82 Copynumber: 1.9 Consensus size: 81
26840156 AAATTGTACA
* * * *
26840166 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
26840230 TGCGAAATGACCATGCG
65 TGCGAAATGACCATGCG
** *
26840247 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
26840312 TGCGA
65 TGCGA
26840317 GTTGATTGTA
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
81 18 0.30
82 43 0.70
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAAATGACCATGCG
Found at i:26840323 original size:27 final size:27
Alignment explanation
Indices: 26840166--26840321 Score: 154
Period size: 27 Copynumber: 5.7 Consensus size: 27
26840156 AAATTGTACA
*
26840166 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
26840193 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* * *
26840220 GCACTAAGTGTGCGAAATGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
26840247 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
26840275 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
26840302 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
26840322 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:26840332 original size:27 final size:27
Alignment explanation
Indices: 26840165--26840342 Score: 144
Period size: 27 Copynumber: 6.6 Consensus size: 27
26840155 TAAATTGTAC
*
26840165 AGCACTAAGTGTGCGA-TTCGACTATGT
1 AGCACTAAGTGTGCGAGTT-GATTATGT
* ** *
26840192 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAGTTGATTATGT
** ** *
26840218 ATGCACTAAGTGTGCGAAATGACCATGC
1 A-GCACTAAGTGTGCGAGTTGATTATGT
* * *
26840246 GGCACTAAGTGTGCGAGTCTAACTATGT
1 AGCACTAAGTGTGCGAGT-TGATTATGT
* *
26840274 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * *
26840301 GGCACTAAGTGTGCGAGTTGATTGTAT
1 AGCACTAAGTGTGCGAGTTGATTATGT
*
26840328 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26840343 GGCTCAATAT
Statistics
Matches: 123, Mismatches: 24, Indels: 8
0.79 0.15 0.05
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATGT
Found at i:26840333 original size:82 final size:81
Alignment explanation
Indices: 26840158--26840342 Score: 201
Period size: 82 Copynumber: 2.3 Consensus size: 81
26840148 GCGGGATTAA
* * * *
26840158 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
26840223 CTAAGTGTGCGAAATG
66 CTAAGTGTGCGAAATG
*** * * ** *
26840239 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
**
26840303 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAAATG
* *
26840321 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
26840343 GGCTCAATAT
Statistics
Matches: 81, Mismatches: 21, Indels: 3
0.77 0.20 0.03
Matches are distributed among these distances:
81 21 0.26
82 60 0.74
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAAATG
Found at i:26868708 original size:49 final size:50
Alignment explanation
Indices: 26868628--26868868 Score: 261
Period size: 49 Copynumber: 4.8 Consensus size: 50
26868618 ATCTATTATG
* * * *
26868628 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTAAGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCGGATAATT
* *
26868678 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCGGATAA-TT
* * * * * * * * **
26868728 CGATCACGTGTGTAGTACTAAGTGCAGACTACGATGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCGGATAATT
* * *
26868778 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCATACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCGGATAATT
** *
26868828 -GGTTGCATGTGTAGTACTAAATGCAGGCTACTATGCGTACC
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
26868869 AGACAACCTT
Statistics
Matches: 156, Mismatches: 33, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
49 76 0.49
50 43 0.28
51 37 0.24
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCGGATAATT
Found at i:26868811 original size:101 final size:99
Alignment explanation
Indices: 26868631--26868858 Score: 271
Period size: 101 Copynumber: 2.3 Consensus size: 99
26868621 TATTATGAGG
* * * *
26868631 TCACGTGTGTAGTACTAAGTGTAGGCTACTAAGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACGAAGTGTACCAGATAATTGGTCACATGTGTAGTACT
* * *
26868696 AAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
66 AAGTGCAGGCTACTACGCATACCGGATAA-TTCGA
* * * ** *
26868731 TCACGTGTGTAGTACTAAGTGCAGACTACGATGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACGAAGTGTACCAGATAATT-GGTCACATGTGTAGTAC
* *
26868796 TAAGTGCAGGCTACTACGCATACCGGATAATTGGT
65 TAAGTGCAGGCTACTACGCATACCGGATAATTCGA
*
26868831 TGCA--TGTGTAGTACTAAATGCAGGCTAC
1 T-CACGTGTGTAGTACTAAGTGCAGGCTAC
26868859 TATGCGTACC
Statistics
Matches: 109, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
99 22 0.20
100 43 0.39
101 44 0.40
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (99 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACGAAGTGTACCAGATAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTACGCATACCGGATAATTCGA
Found at i:26868903 original size:150 final size:150
Alignment explanation
Indices: 26868628--26868904 Score: 389
Period size: 150 Copynumber: 1.8 Consensus size: 150
26868618 ATCTATTATG
* **
26868628 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTAAGTGTACCGGATAATTGGTCGCATGTGTAGT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTAAGCATACCGGATAATTGGTCGCATGTGTAGT
* * * ** * *
26868693 ACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGATCACGTGTGTAGTACTAAGTGCAGACT
66 ACTAAATGCAGGCTACTATGCGTACCAGACAACTTCGATCACAAGTGTAGAAATAAGTGCAGACT
26868758 ACGATGTGTATCAGATGGTT
131 ACGATGTGTATCAGATGGTT
* *
26868778 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCATACCGGATAATTGGTTGCATGTGTAGT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTAAGCATACCGGATAATTGGTCGCATGTGTAGT
*
26868843 ACTAAATGCAGGCTACTATGCGTACCAGACAACCTT-G-TCTACAAGTG-AGAAAATATGTGCAG
66 ACTAAATGCAGGCTACTATGCGTACCAGACAA-CTTCGATC-ACAAGTGTAG-AAATAAGTGCAG
26868905 GCAACTGAGT
Statistics
Matches: 111, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
149 4 0.04
150 104 0.94
151 3 0.03
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (150 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTAAGCATACCGGATAATTGGTCGCATGTGTAGT
ACTAAATGCAGGCTACTATGCGTACCAGACAACTTCGATCACAAGTGTAGAAATAAGTGCAGACT
ACGATGTGTATCAGATGGTT
Found at i:26874982 original size:10 final size:10
Alignment explanation
Indices: 26874967--26875001 Score: 61
Period size: 10 Copynumber: 3.4 Consensus size: 10
26874957 TTTGTACATA
26874967 ATATGCCATG
1 ATATGCCATG
26874977 ATATGCACATG
1 ATATGC-CATG
26874988 ATATGCCATG
1 ATATGCCATG
26874998 ATAT
1 ATAT
26875002 ATACATATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 14 0.58
11 10 0.42
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Consensus pattern (10 bp):
ATATGCCATG
Found at i:26874986 original size:21 final size:21
Alignment explanation
Indices: 26874962--26875001 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
26874952 ACTGATTTGT
26874962 ACATAATATGCCATGATATGC
1 ACATAATATGCCATGATATGC
*
26874983 ACATGATATGCCATGATAT
1 ACATAATATGCCATGATAT
26875002 ATACATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (21 bp):
ACATAATATGCCATGATATGC
Found at i:26875007 original size:21 final size:20
Alignment explanation
Indices: 26874961--26875013 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 20
26874951 TACTGATTTG
*
26874961 TACATAATATGCCATGATATG
1 TACAT-ATATGCCATGATATA
*
26874982 CACATGATATGCCATGATATA
1 TACAT-ATATGCCATGATATA
26875003 TACATATATGC
1 TACATATATGC
26875014 ATGGGTTGGG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 6 0.21
21 22 0.79
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.32
Consensus pattern (20 bp):
TACATATATGCCATGATATA
Found at i:26875080 original size:25 final size:25
Alignment explanation
Indices: 26875047--26875116 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
26875037 CAGGAAGTGA
*
26875047 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* * *
26875072 AAAAGGGCTTTGGCCCAATTTATCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
26875097 AAAAAGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
26875117 ATTAAAAGAG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:26875128 original size:24 final size:24
Alignment explanation
Indices: 26875097--26875143 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
26875087 CAATTTATCG
**
26875097 AAAAAGGCTTTGCC-CCAGTTATT
1 AAAAAGGCTAGGCCTCCAGTTATT
26875120 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAA-AGGCTAGGCCTCCAGTTAT
26875144 ATGATAAAGC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 4 0.20
24 8 0.40
25 8 0.40
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (24 bp):
AAAAAGGCTAGGCCTCCAGTTATT
Found at i:26875372 original size:31 final size:31
Alignment explanation
Indices: 26875337--26875420 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
26875327 CGTTTACAGT
26875337 AAAGGCTTCGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* *
26875368 AAAGGCTTCGGCCCAGTGGTATGAATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
*
26875399 AAAGGCTTCGACCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
26875421 TTGAGATTGA
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
30 4 0.08
31 45 0.92
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:26877687 original size:49 final size:49
Alignment explanation
Indices: 26877508--26877695 Score: 207
Period size: 49 Copynumber: 3.8 Consensus size: 49
26877498 TGAGGTCACG
* * * * *
26877508 TGTGTAGTACGAAGTGCAAGCTACTACGTGTACAGGATAATT-GTCGCA
1 TGTGTAGTACTAAGTGTAGGCTACTACGCGTACCGGATAATTGGTCGCA
* * * * *
26877556 TGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGTAGGCTACTACGCGTACCGGATAA-TT-GGTCGCA
* * *
26877607 TGTATAGTACTAAGTGCAGGCTACTACGCGTACCGGATAATTGGTCGTA
1 TGTGTAGTACTAAGTGTAGGCTACTACGCGTACCGGATAATTGGTCGCA
* * *
26877656 TGTGTAGTACTAAGTGTAGCCTACTATGCGTACCAGATAA
1 TGTGTAGTACTAAGTGTAGGCTACTACGCGTACCGGATAA
26877696 CCTTGTCTAC
Statistics
Matches: 114, Mismatches: 23, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
48 33 0.29
49 40 0.35
50 2 0.02
51 39 0.34
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGTAGGCTACTACGCGTACCGGATAATTGGTCGCA
Found at i:26877695 original size:100 final size:99
Alignment explanation
Indices: 26877503--26877696 Score: 307
Period size: 100 Copynumber: 1.9 Consensus size: 99
26877493 TATTGTGAGG
* *
26877503 TCACGTGTGTAGTACGAAGTGCAAGCTACTACGTGTACAGGATAATTGTCGCATGTGTAGTACTA
1 TCACGTGTATAGTACGAAGTGCAAGCTACTACGCGTACAGGATAATTGTCGCATGTGTAGTACTA
* *
26877568 AGTGTAGGCTACTATGCGTACCCGATAACTTCGA
66 AGTGTAGCCTACTATGCGTACCAGATAACTTCGA
* * * *
26877602 TCACGTGTATAGTACTAAGTGCAGGCTACTACGCGTACCGGATAATTGGTCGTATGTGTAGTACT
1 TCACGTGTATAGTACGAAGTGCAAGCTACTACGCGTACAGGATAATT-GTCGCATGTGTAGTACT
26877667 AAGTGTAGCCTACTATGCGTACCAGATAAC
65 AAGTGTAGCCTACTATGCGTACCAGATAAC
26877697 CTTGTCTACA
Statistics
Matches: 86, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
99 42 0.49
100 44 0.51
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (99 bp):
TCACGTGTATAGTACGAAGTGCAAGCTACTACGCGTACAGGATAATTGTCGCATGTGTAGTACTA
AGTGTAGCCTACTATGCGTACCAGATAACTTCGA
Found at i:26881836 original size:27 final size:27
Alignment explanation
Indices: 26881783--26881836 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
26881773 TGTCATGTGA
* *
26881783 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
** *
26881810 AATTGAATGTTAAATTACTATTCCATG
1 AATTGAATGGCAAATTACTATTACATG
26881837 GGTTGTATGA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.37, C:0.09, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:26882207 original size:49 final size:50
Alignment explanation
Indices: 26882036--26882225 Score: 202
Period size: 49 Copynumber: 3.8 Consensus size: 50
26882026 TGAGGTAACG
* * * * *
26882036 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCAAA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-TTAGGTCACA
* * * * ** *
26882087 TGTGTAATACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTAGGTCACA
* * *
26882137 TGTGTAGTACTAAGTACAGGCTACTACGCGTACCGGATAATT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTAGGTCACA
* * *
26882186 TGTGTAGTACTAAGTGTAGGCTGCTATGCGTACCAGATAA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA
26882226 CCTTGTCTAC
Statistics
Matches: 112, Mismatches: 27, Indels: 2
0.79 0.19 0.01
Matches are distributed among these distances:
49 40 0.36
50 40 0.36
51 32 0.29
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTAGGTCACA
Found at i:26899631 original size:27 final size:27
Alignment explanation
Indices: 26899600--26899777 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
26899590 TAAATTGTAC
26899600 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
26899627 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26899653 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
26899681 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
26899709 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26899736 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
26899763 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26899778 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:26899714 original size:82 final size:81
Alignment explanation
Indices: 26899601--26899756 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
26899591 AAATTGTACA
* *
26899601 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
26899665 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
26899682 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
26899747 TGCGAGTTGA
65 TGCGAATTGA
26899757 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:26899768 original size:82 final size:81
Alignment explanation
Indices: 26899597--26899777 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
26899587 GATTAAATTG
* *
26899597 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
26899662 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
26899678 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
26899742 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
26899760 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
26899778 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:26907710 original size:27 final size:27
Alignment explanation
Indices: 26907676--26907826 Score: 160
Period size: 27 Copynumber: 5.6 Consensus size: 27
26907666 TAAATTGTAC
* *
26907676 AGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
26907702 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
26907730 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
26907758 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
26907785 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
26907812 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26907827 GACTCAATAT
Statistics
Matches: 108, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
26 1 0.01
27 84 0.78
28 23 0.21
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:26907773 original size:55 final size:54
Alignment explanation
Indices: 26907675--26907826 Score: 171
Period size: 55 Copynumber: 2.8 Consensus size: 54
26907665 TTAAATTGTA
** *
26907675 CAGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTGTGCGAATTGACCATG
1 CAGCACTAAGTGTGCGAGTTGAATATGTA-GCACTAAGTGTGCGAATTGACCACG
* * * **
26907729 CGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG
1 CAGCACTAAGTGTGCGAG-TTGAATATGTAGCACTAAGTGTGCGAATTGACCACG
* * * *
26907784 TAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 CAGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCG
26907827 GACTCAATAT
Statistics
Matches: 83, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
54 38 0.46
55 44 0.53
56 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (54 bp):
CAGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAATTGACCACG
Found at i:26907817 original size:82 final size:82
Alignment explanation
Indices: 26907676--26907826 Score: 187
Period size: 82 Copynumber: 1.8 Consensus size: 82
26907666 TAAATTGTAC
* * *
26907676 AGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTG
1 AGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGTGCGAATTGACCATACAGCACTAAGTG
26907741 TGCGAGTTTGACTATGT
66 TGCGAGTTTGACTATGT
** * * ** * *
26907758 AGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGT
1 AGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGTGTGCGAATTGACCATACAGCACTAAGT
26907822 GTGCG
65 GTGCG
26907827 GACTCAATAT
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
81 1 0.02
82 56 0.98
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (82 bp):
AGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGTGCGAATTGACCATACAGCACTAAGTG
TGCGAGTTTGACTATGT
Found at i:26915804 original size:27 final size:27
Alignment explanation
Indices: 26915721--26915896 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
26915711 TAAATTGTAC
26915721 AGCACTAAGTGTGCG-ATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
26915747 TGCACTAA-TGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
26915772 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
26915800 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
26915828 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
26915855 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
26915882 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26915897 GACTCAATAT
Statistics
Matches: 127, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
25 6 0.05
26 22 0.17
27 76 0.60
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:26915841 original size:55 final size:54
Alignment explanation
Indices: 26915721--26915896 Score: 196
Period size: 55 Copynumber: 3.3 Consensus size: 54
26915711 TAAATTGTAC
* **
26915721 AGCACTAAGTGTGCG-ATTGACTATGTTGCACTAA-TGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGT
* ** *
26915772 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGT
1 A-GCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAG-TTGAATATGT
* * * * *
26915828 AGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGT
*
26915882 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26915897 GACTCAATAT
Statistics
Matches: 105, Mismatches: 15, Indels: 7
0.83 0.12 0.06
Matches are distributed among these distances:
51 1 0.01
52 14 0.13
53 16 0.15
54 29 0.28
55 44 0.42
56 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (54 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGT
Found at i:26915865 original size:82 final size:79
Alignment explanation
Indices: 26915722--26915875 Score: 211
Period size: 82 Copynumber: 1.9 Consensus size: 79
26915712 AAATTGTACA
* *
26915722 GCACTAAGTGTGCGATTGACTATGTTGCACTAATGTGCGAAATGAATATGATGCACTAAGTGTGC
1 GCACTAAGTGTGCGATTGACTATGTAGCACTAATGTGCGAAATGAATACGATGCACTAAGTGTGC
26915787 GAATTGACCATGCG
66 GAATTGACCATGCG
** *
26915801 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAGT
1 GCACTAAGTGTGCGA--TTGACTATGTAGCACTAA-TGTGCGAAATGAATACGAT-GCACTAAGT
*
26915865 GTGCGAGTTGA
62 GTGCGAATTGA
26915876 TTATATAGCA
Statistics
Matches: 65, Mismatches: 6, Indels: 5
0.86 0.08 0.07
Matches are distributed among these distances:
79 15 0.23
81 18 0.28
82 32 0.49
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (79 bp):
GCACTAAGTGTGCGATTGACTATGTAGCACTAATGTGCGAAATGAATACGATGCACTAAGTGTGC
GAATTGACCATGCG
Found at i:26915887 original size:82 final size:79
Alignment explanation
Indices: 26915718--26915896 Score: 207
Period size: 82 Copynumber: 2.2 Consensus size: 79
26915708 GATTAAATTG
* *
26915718 TACAGCACTAAGTGTGCGATTGACTATGTTGCACTAATGTGCGAAATGAATATGATGCACTAAGT
1 TACAGCACTAAGTGTGCGATTGACTATGTAGCACTAATGTGCGAAATGAATACGATGCACTAAGT
26915783 GTGCGAATTGACCA
66 GTGCGAATTGACCA
* * ** *
26915797 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA--TTGACTATGTAGCACTAA-TGTGCGAAATGAATACGAT-GCACT
* **
26915861 AAGTGTGCGAGTTGATTA
62 AAGTGTGCGAATTGACCA
* *
26915879 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
26915897 GACTCAATAT
Statistics
Matches: 82, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
79 17 0.21
81 18 0.22
82 47 0.57
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (79 bp):
TACAGCACTAAGTGTGCGATTGACTATGTAGCACTAATGTGCGAAATGAATACGATGCACTAAGT
GTGCGAATTGACCA
Found at i:26917230 original size:1 final size:1
Alignment explanation
Indices: 26917224--26917273 Score: 100
Period size: 1 Copynumber: 50.0 Consensus size: 1
26917214 CCCTGGTGTC
26917224 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
26917274 GGTTTCGGGT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 49 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:26919142 original size:8 final size:8
Alignment explanation
Indices: 26919129--26919160 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
26919119 CTAGATCGGC
26919129 AAAAGCCG
1 AAAAGCCG
26919137 AAAAGCCG
1 AAAAGCCG
*
26919145 AAATGCCG
1 AAAAGCCG
26919153 AAAAGCCG
1 AAAAGCCG
26919161 GTATTTGGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.47, C:0.25, G:0.25, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:26919439 original size:28 final size:28
Alignment explanation
Indices: 26919407--26919471 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
26919397 ATTTACTAGA
*
26919407 ATACCCCTATGTATGCAAAATTACCATC
1 ATACCCCTATGTATGCAAAATGACCATC
* * *
26919435 ATACCCCTATGTGTGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATC
26919463 ATACCCCTA
1 ATACCCCTA
26919472 GGGTTAATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.32, C:0.29, G:0.09, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATC
Found at i:26919677 original size:29 final size:28
Alignment explanation
Indices: 26919587--26919677 Score: 67
Period size: 27 Copynumber: 3.2 Consensus size: 28
26919577 CTAGTGGCTA
* * * * *
26919587 TGCCACAAATTACCTATTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** * *
26919615 TGCCAC-GTATATTTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
26919642 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
26919671 TGTCACA
1 TGCCACA
26919678 TTTTCTGTAT
Statistics
Matches: 48, Mismatches: 13, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
27 20 0.42
28 13 0.27
29 15 0.31
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:26930613 original size:82 final size:81
Alignment explanation
Indices: 26930497--26930647 Score: 223
Period size: 82 Copynumber: 1.9 Consensus size: 81
26930487 AAATTGTACA
* * *
26930497 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATATG-TGGCACTAAGTG
26930561 TGCGAAATGACCATGCG
65 TGCGAAATGACCATGCG
** *
26930578 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATATGTGGCACTAAGTG
26930643 TGCGA
65 TGCGA
26930648 GTTGATTGTA
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
81 18 0.29
82 44 0.71
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATATGTGGCACTAAGTGT
GCGAAATGACCATGCG
Found at i:26930652 original size:27 final size:27
Alignment explanation
Indices: 26930496--26930673 Score: 162
Period size: 27 Copynumber: 6.6 Consensus size: 27
26930486 TAAATTGTAC
26930496 AGCACTAAGTGTGCG-ATTCGACTATGT
1 AGCACTAAGTGTGCGAATT-GACTATGT
* * *
26930523 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
26930549 ATGCACTAAGTGTGCGAAATGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* * *
26930577 GGCACTAAGTGTGCGAGTCTAACTATGT
1 AGCACTAAGTGTGCGAAT-TGACTATGT
* *
26930605 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * * * *
26930632 GGCACTAAGTGTGCGAGTTGATTGTAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
26930659 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26930674 GGCTCAATAT
Statistics
Matches: 125, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
27 101 0.81
28 24 0.19
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:26930664 original size:82 final size:81
Alignment explanation
Indices: 26930489--26930673 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
26930479 GCGGGATTAA
* * *
26930489 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCA
26930554 CTAAGTGTGCGAAATG
66 CTAAGTGTGCGAAATG
*** * * ** *
26930570 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTATG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-G
**
26930634 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAAATG
* *
26930652 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
26930674 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 21 0.26
82 61 0.74
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCA
CTAAGTGTGCGAAATG
Found at i:26935068 original size:17 final size:18
Alignment explanation
Indices: 26935041--26935074 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
26935031 AATTAAATAT
26935041 ATGCATATTAAATTATTA
1 ATGCATATTAAATTATTA
*
26935059 ATGC-TATTAATTTATT
1 ATGCATATTAAATTATT
26935075 TAAACAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (18 bp):
ATGCATATTAAATTATTA
Found at i:26935414 original size:30 final size:30
Alignment explanation
Indices: 26935359--26935415 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
26935349 CTTTTGAAAA
* *
26935359 TATTTACAAAAAGAGGCATCTAATTTTTAT
1 TATTTACAAAAAGAGGCACCAAATTTTTAT
26935389 TATTTACAAAAAGA-GCTACCAAATTTT
1 TATTTACAAAAAGAGGC-ACCAAATTTT
26935416 AAAAATATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 2 0.08
30 22 0.92
ACGTcount: A:0.42, C:0.12, G:0.09, T:0.37
Consensus pattern (30 bp):
TATTTACAAAAAGAGGCACCAAATTTTTAT
Found at i:26942644 original size:13 final size:13
Alignment explanation
Indices: 26942626--26942651 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26942616 GGGGCTAATT
26942626 TGCAATTTGAACA
1 TGCAATTTGAACA
26942639 TGCAATTTGAACA
1 TGCAATTTGAACA
26942652 AGTCTTCAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGCAATTTGAACA
Found at i:26942762 original size:14 final size:14
Alignment explanation
Indices: 26942743--26942773 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
26942733 TCTCCTTGCC
*
26942743 CGGTTCGGTTCACT
1 CGGTTCGGTTCAAT
26942757 CGGTTCGGTTCAAT
1 CGGTTCGGTTCAAT
26942771 CGG
1 CGG
26942774 ACCATTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.10, C:0.26, G:0.32, T:0.32
Consensus pattern (14 bp):
CGGTTCGGTTCAAT
Found at i:26953147 original size:44 final size:43
Alignment explanation
Indices: 26953097--26953211 Score: 126
Period size: 44 Copynumber: 2.7 Consensus size: 43
26953087 TATGTGACTT
*
26953097 CGTGTAAGACCACATCTGGGACATTGGCATCGATT-TATGATTTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCG-TTATATGA-TTA
* * *
26953141 CGTGTAAGACC-CTGTCTGGGACAGTGGTATCGTTATGTGATTA
1 CGTGTAAGACCAC-GTCTGGGACATTGGCATCGTTATATGATTA
* * *
26953184 CATGGAAGACCACGTCTGGGACGTTGGC
1 CGTGTAAGACCACGTCTGGGACATTGGC
26953212 GTTGTATGAG
Statistics
Matches: 59, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
43 27 0.46
44 32 0.54
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACATTGGCATCGTTATATGATTA
Found at i:26953574 original size:18 final size:18
Alignment explanation
Indices: 26953553--26953588 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
26953543 AATTTCATTG
26953553 AAATGATTTATTTGCTTA
1 AAATGATTTATTTGCTTA
26953571 AAATGATTTATTTGCTTA
1 AAATGATTTATTTGCTTA
26953589 TGACTTACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.06, G:0.11, T:0.50
Consensus pattern (18 bp):
AAATGATTTATTTGCTTA
Found at i:26968633 original size:43 final size:43
Alignment explanation
Indices: 26968566--26968693 Score: 172
Period size: 43 Copynumber: 3.0 Consensus size: 43
26968556 CATAAGCTCG
* *
26968566 TACAATGCCATATCCCAGATATGGTCTTACATGTTATCACATA
1 TACAATGCCATATCCCAGACATGGTCTTACATGTAATCACATA
*
26968609 T-CGATGCCACTATCCCAGACATGGTCTTACATGTAATCACA-A
1 TACAATGCCA-TATCCCAGACATGGTCTTACATGTAATCACATA
*
26968651 TACAATGCCA-ATGCCCCAGACATGGTCTTACATGAAATCACAT
1 TACAATGCCATAT--CCCAGACATGGTCTTACATGTAATCACAT
26968694 CTTTGTAACC
Statistics
Matches: 75, Mismatches: 5, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
41 2 0.03
42 9 0.12
43 64 0.85
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (43 bp):
TACAATGCCATATCCCAGACATGGTCTTACATGTAATCACATA
Found at i:26975129 original size:17 final size:19
Alignment explanation
Indices: 26975061--26975129 Score: 53
Period size: 16 Copynumber: 3.8 Consensus size: 19
26975051 ATAGTGATGT
26975061 GAATAAT-ATAAAATATT-
1 GAATAATAATAAAATATTA
26975078 -AA-AAT-ATCAAAATATTA
1 GAATAATAAT-AAAATATTA
26975095 GAATAATAATAATTAATATT-
1 GAATAATAATAA--AATATTA
*
26975115 GACTAATAA-AAAATA
1 GAATAATAATAAAATA
26975130 AAATAGAAAT
Statistics
Matches: 44, Mismatches: 1, Indels: 14
0.75 0.02 0.24
Matches are distributed among these distances:
15 5 0.11
16 10 0.23
17 4 0.09
18 2 0.05
19 7 0.16
20 10 0.23
21 6 0.14
ACGTcount: A:0.61, C:0.03, G:0.04, T:0.32
Consensus pattern (19 bp):
GAATAATAATAAAATATTA
Found at i:26975347 original size:25 final size:25
Alignment explanation
Indices: 26975236--26975442 Score: 103
Period size: 25 Copynumber: 8.6 Consensus size: 25
26975226 TTATAAAAAA
* * * * *
26975236 ATATGTACATACTATAGTGTAAAAA
1 ATATATACATAATATAGTATTAAAG
*
26975261 ATACATACATAATATA--ATTAAA-
1 ATATATACATAATATAGTATTAAAG
* ** *
26975283 ATATATACATAAGATAACATGTAAATAT
1 ATATATACATAATATAGTAT-T-AA-AG
*
26975311 ATATATAAATAATATAGTATTAAAG
1 ATATATACATAATATAGTATTAAAG
* * *
26975336 ATATATACATAAAATAGGA-TAATAT
1 ATATATACATAATATAGTATTAA-AG
* * *
26975361 ATATATACGTAATATAGAATT-TAG
1 ATATATACATAATATAGTATTAAAG
* *
26975385 A-ATATACCTAATATA-T-TAAAAG
1 ATATATACATAATATAGTATTAAAG
* *
26975407 A-ATATATATAATATAATATT-AAG
1 ATATATACATAATATAGTATTAAAG
*
26975430 AAATATA-ATAATA
1 ATATATACATAATA
26975443 ACAAAAAAAG
Statistics
Matches: 142, Mismatches: 28, Indels: 26
0.72 0.14 0.13
Matches are distributed among these distances:
21 1 0.01
22 29 0.20
23 28 0.20
24 13 0.09
25 48 0.34
26 5 0.04
27 2 0.01
28 16 0.11
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.34
Consensus pattern (25 bp):
ATATATACATAATATAGTATTAAAG
Found at i:26975951 original size:30 final size:30
Alignment explanation
Indices: 26975910--26976068 Score: 273
Period size: 30 Copynumber: 5.3 Consensus size: 30
26975900 TAGGTACAAG
26975910 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* *
26975940 AGGTAGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
*
26975970 TGGTGGTGGAGTAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* *
26976000 AGGTAGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
26976030 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
26976060 TGGTGGTGG
1 TGGTGGTGG
26976069 CAAAGGATTT
Statistics
Matches: 119, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 119 1.00
ACGTcount: A:0.18, C:0.06, G:0.50, T:0.26
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:26976973 original size:101 final size:91
Alignment explanation
Indices: 26976868--26977275 Score: 329
Period size: 91 Copynumber: 4.4 Consensus size: 91
26976858 ACGTGAGCCA
*
26976868 AGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTG-CAAAGCATAAATTGAAAAAAATAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAA-CATAAATTG----AAA-AAAA
*
26976932 ATAAAAATCAATTGAAAATACCTCAGCGTGTGATCTG
60 A-AAAAA--AATTGAAAATACCTCAGCGTGTCA--TG
* *
26976969 AGGCTCAACTCACCTCTCGCAATATGAGTTGTTTTTTTGACAAACATAAATTGAAAAAAAAAAAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTTGACAAACATAAATTGAAAAAAAAAAAA
*
26977034 AAATTGAAAATATCTCAGCGTGTCATG
65 AAATTGAAAATACCTCAGCGTGTCATG
* * * *
26977061 AGGCTGAACTCACCTATCGCAATATGAGTTGATTTTTTGGAAAAACA-AAATTTG----AAAAAC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT-GACAAACATAAA-TTGAAAAAAAAAA
* * * *
26977121 AGAATTTGAAAATACCTCAGCGTGTGAGTCA
63 AAAAATTGAAAATACCTCAGCGTGTCA-T-G
* * * * *
26977152 AGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTTGA-AACACAGAAATTG----AAGAAC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGACAA-ACATAAATTGAAAAAAAAAA
* * * *
26977212 AGAAATGGAAAACACCTCAGC--GTCTTG
63 AAAAATTGAAAATACCTCAGCGTGTCATG
* *
26977239 AGGCTCAACTCACATCTCGCAATATGAGCTGATTTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
26977276 TTTGAAAGAC
Statistics
Matches: 270, Mismatches: 27, Indels: 36
0.81 0.08 0.11
Matches are distributed among these distances:
85 5 0.02
87 30 0.11
88 1 0.00
89 31 0.11
90 3 0.01
91 59 0.22
92 48 0.18
93 10 0.04
94 22 0.08
96 4 0.01
97 5 0.02
98 3 0.01
101 30 0.11
102 15 0.06
103 4 0.01
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.27
Consensus pattern (91 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACATAAATTGAAAAAAAAAAAAA
AATTGAAAATACCTCAGCGTGTCATG
Found at i:26977132 original size:13 final size:14
Alignment explanation
Indices: 26977100--26977132 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
26977090 TGATTTTTTG
26977100 GAAAAACAAAATTT
1 GAAAAACAAAATTT
*
26977114 GAAAAACAGAATTT
1 GAAAAACAAAATTT
26977128 GAAAA
1 GAAAA
26977133 TACCTCAGCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.64, C:0.06, G:0.12, T:0.18
Consensus pattern (14 bp):
GAAAAACAAAATTT
Found at i:26977159 original size:183 final size:178
Alignment explanation
Indices: 26976943--26977276 Score: 449
Period size: 183 Copynumber: 1.8 Consensus size: 178
26976933 TAAAAATCAA
* * *
26976943 TTGAAAATACCTCAGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-TTTTTTT
1 TTGAAAATACCTCAGCGTGTGATCTAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTT
* * * * *
26977007 GACAA-ACATAAATTGAAAAAAAAAAAGAAATTGAAAATATCTCAGCGTGTCATGAGGCTGAACT
66 GA-AACACAGAAATTG----AAAAAAAGAAATGGAAAACACCTCAGC--GTCATGAGGCTCAACT
* *
26977071 CACCTATCGCAATATGAGTTGATTTTTTGGAAAAACAAAATTTGAAAAACAGAAT
124 CACATATCGCAATATGAGCTGATTTTTTGGAAAAACAAAATTTGAAAAACAGAAT
26977126 TTGAAAATACCTCAGCGTGTGAGTC-AAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTT
1 TTGAAAATACCTCAGCGTGTGA-TCTAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTT
* * * *
26977190 TGAAACACAGAAATTGAAGAACAGAAATGGAAAACACCTCAGCGTCTTGAGGCTCAACTCACATC
65 TGAAACACAGAAATTGAAAAAAAGAAATGGAAAACACCTCAGCGTCATGAGGCTCAACTCACATA
26977255 TCGCAATATGAGCTGATTTTTT
130 TCGCAATATGAGCTGATTTTTT
26977277 TTGAAAGACA
Statistics
Matches: 134, Mismatches: 14, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
178 39 0.29
180 22 0.16
183 53 0.40
184 20 0.15
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.28
Consensus pattern (178 bp):
TTGAAAATACCTCAGCGTGTGATCTAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTT
GAAACACAGAAATTGAAAAAAAGAAATGGAAAACACCTCAGCGTCATGAGGCTCAACTCACATAT
CGCAATATGAGCTGATTTTTTGGAAAAACAAAATTTGAAAAACAGAAT
Found at i:26977176 original size:91 final size:89
Alignment explanation
Indices: 26976941--26977297 Score: 402
Period size: 91 Copynumber: 3.9 Consensus size: 89
26976931 AATAAAAATC
* *
26976941 AATTGAAAATACCTCAGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-TTTTT
1 AATTGAAAATACCTCAGCGTGTGA--TGAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTT
* * *
26977005 TTGACAAACATAAATTGAAAAAAAAAAAGA
64 TTGAAAAACAGAAATTG----AAAAACAGA
* * * *
26977035 AATTGAAAATATCTCAGCGTGTCATGAGGCTGAACTCACCTA-TCGCAATATGAGTTGATTTTTT
1 AATTGAAAATACCTCAGCGTGTGATGAGGCTCAACTCACC-ACTCGCAATATGAGCTGATTTTTT
*
26977099 GGAAAAACA-AAATTTGAAAAACAGA
65 TGAAAAACAGAAA-TTGAAAAACAGA
* *
26977124 ATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTT
1 AATTGAAAATACCTCAGCGTGTGA-T-GAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTT
* *
26977189 TTGAAACACAGAAATTGAAGAACAGA
64 TTGAAAAACAGAAATTGAAAAACAGA
* * *
26977215 AATGGAAAACACCTCAGCGTCT--TGAGGCTCAACTCA-CATCTCGCAATATGAGCTGATTTTTT
1 AATTGAAAATACCTCAGCGTGTGATGAGGCTCAACTCACCA-CTCGCAATATGAGCTGA-TTTTT
*
26977277 TTGAAAGACAGAAATTGAAAA
64 TTGAAAAACAGAAATTGAAAA
26977298 TACCTCAACG
Statistics
Matches: 231, Mismatches: 23, Indels: 24
0.83 0.08 0.09
Matches are distributed among these distances:
86 2 0.01
87 29 0.13
88 25 0.11
89 29 0.13
90 2 0.01
91 70 0.30
92 36 0.16
93 16 0.07
94 22 0.10
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.27
Consensus pattern (89 bp):
AATTGAAAATACCTCAGCGTGTGATGAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTT
GAAAAACAGAAATTGAAAAACAGA
Found at i:26977393 original size:73 final size:74
Alignment explanation
Indices: 26977209--26977948 Score: 836
Period size: 73 Copynumber: 9.9 Consensus size: 74
26977199 GAAATTGAAG
* * * * *
26977209 AACAGAAATGGAAAACACCTCAGC--GTCTTGAGGCTCAACTCACATCTCGCAATATGAGCTGAT
1 AACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
26977272 TTTTTTTGA-A
65 -TTTTTTGACA
* * * *
26977282 AGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCAACTCTCGCAATATGAGTTGA
1 A-ACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
26977347 -TTTTTGACA
65 TTTTTTGACA
* * *
26977356 AACAAAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
*
26977421 TTTTTTGAAA
65 TTTTTTGACA
* * *
26977431 AACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGA-
1 AACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
26977495 GTTTTGACA
66 TTTTTGACA
* * * * *
26977504 AACAAAAATTGAAATTACCTCAGC--GTCTTGAGGTTCAACTCACCTATCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
*
26977567 TTTTTTTGAAA
65 -TTTTTTGACA
* * *
26977578 AACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
***
26977643 TTTGACAAACA
66 TTT--TTGACA
* *
26977654 GAGACAGAAATTGAAAATACCTCAGCACATGAGCC-GAGGCTCAACTCACCTCTTGCAATATGAG
1 -A-ACAGAAATTGAAAATACCTCAG--CATG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAG
26977718 TTGATTTTTTTGAC-
61 TTGA-TTTTTTGACA
* * * *
26977732 AATAGAAATTGCAATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
26977797 TCTTTTGA-A
66 T-TTTTGACA
* * * *
26977806 AAGCAGAAATTGAAAATACCTCAACATGTGACCCGAGGCTCAACTCACCTCTTGCAACATGAGTT
1 AA-CAGAAATTGAAAATACCTCAGCATGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
26977871 GA-TTTTTGACA
63 GATTTTTTGACA
* * * * * *
26977882 AACAGGAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCCCACAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
26977947 TT
66 TT
26977949 AAAAAACAGA
Statistics
Matches: 573, Mismatches: 67, Indels: 53
0.83 0.10 0.08
Matches are distributed among these distances:
71 35 0.06
73 128 0.22
74 101 0.18
75 116 0.20
76 93 0.16
77 36 0.06
78 22 0.04
79 2 0.00
80 34 0.06
81 6 0.01
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (74 bp):
AACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTTGACA
Found at i:26977465 original size:75 final size:75
Alignment explanation
Indices: 26977203--26977948 Score: 850
Period size: 75 Copynumber: 10.0 Consensus size: 75
26977193 AACACAGAAA
* * * * *
26977203 TTGAAGAACAGAAATGGAAAACACCTCAGC--GTCTTGAGGCTCAACTCACATCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
26977266 GCTGATTTTTT
66 GTTGA-TTTTT
* * * * *
26977277 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCAACTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
26977342 GTTGA--TTT
66 GTTGATTTTT
* * * *
26977350 TTGACAAACAAAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTATCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
26977415 GTTGATTTTT
66 GTTGATTTTT
* * *
26977425 TTGAAAAACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
26977490 GTTGA--GTT
66 GTTGATTTTT
* * * * * *
26977498 TTGACAAACAAAAATTGAAATTACCTCAGC--GTCTTGAGGTTCAACTCACCTATCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
26977561 GTTGATTTTTT
66 GTTGA-TTTTT
* * *
26977572 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
26977637 GTTGATTTTG
66 GTTGATTTTT
*** * *
26977647 ACAAACAGAGACAGAAATTGAAAATACCTCAGCACATGAGCC-GAGGCTCAACTCACCTCTTGCA
1 TTGAA-A-A-ACAGAAATTGAAAATACCTCAG--CATG-TCCTGAGGCTCAACTCACCTCTCGCA
26977711 ATATGAGTTGATTTTT
60 ATATGAGTTGATTTTT
* * * * *
26977727 TTG-ACAATAGAAATTGCAATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
26977791 GTTGATTCTT
66 GTTGATTTTT
* * * * *
26977801 TTGAAAAGCAGAAATTGAAAATACCTCAACATGTGACCCGAGGCTCAACTCACCTCTTGCAACAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGT--CCTGAGGCTCAACTCACCTCTCGCAATAT
26977866 GAGTTGA--TTT
64 GAGTTGATTTTT
* * * * * * *
26977876 TTGACAAACAGGAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCCCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
26977941 GTTGATTT
66 GTTGATTT
26977949 AAAAAACAGA
Statistics
Matches: 572, Mismatches: 79, Indels: 41
0.83 0.11 0.06
Matches are distributed among these distances:
71 35 0.06
73 126 0.22
74 97 0.17
75 127 0.22
76 88 0.15
77 36 0.06
78 22 0.04
79 1 0.00
80 38 0.07
81 2 0.00
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (75 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTT
Found at i:26985097 original size:23 final size:23
Alignment explanation
Indices: 26985071--26985119 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
26985061 ATAATACTAC
*
26985071 ATAAATATGTACAT-ATATAAAAA
1 ATAAATACGT-CATAATATAAAAA
*
26985094 ATAAATACGTCATAATATTAAAA
1 ATAAATACGTCATAATATAAAAA
26985117 ATA
1 ATA
26985120 TGTACATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 3 0.13
23 20 0.87
ACGTcount: A:0.59, C:0.06, G:0.04, T:0.31
Consensus pattern (23 bp):
ATAAATACGTCATAATATAAAAA
Found at i:26985129 original size:20 final size:20
Alignment explanation
Indices: 26985073--26985132 Score: 61
Period size: 23 Copynumber: 2.9 Consensus size: 20
26985063 AATACTACAT
26985073 AAATATGTACAT-ATATAAA
1 AAATATGTACATAATATAAA
*
26985092 AAATAAATACGT-CATAATATTAA
1 AAAT--AT--GTACATAATATAAA
26985115 AAATATGTACATAATATA
1 AAATATGTACATAATATA
26985133 GTGTAAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 11
0.72 0.04 0.24
Matches are distributed among these distances:
19 6 0.18
20 8 0.24
21 4 0.12
22 3 0.09
23 12 0.36
ACGTcount: A:0.57, C:0.07, G:0.05, T:0.32
Consensus pattern (20 bp):
AAATATGTACATAATATAAA
Found at i:26985171 original size:22 final size:23
Alignment explanation
Indices: 26985110--26985208 Score: 83
Period size: 25 Copynumber: 4.0 Consensus size: 23
26985100 ACGTCATAAT
*
26985110 ATTAAAAATATGTACATAATATA
1 ATTAAAAATATATACATAATATA
* *
26985133 GTGTAAAAAATACATACATAATATA
1 AT-T-AAAAATATATACATAATATA
*
26985158 ATT-AAAATATATACATAAGATAA
1 ATTAAAAATATATACATAATAT-A
*
26985181 CATGTAAAAAATATATATATATATATA
1 -AT-T-AAAAATATATACATA-ATATA
26985208 A
1 A
26985209 ATAATATAGT
Statistics
Matches: 60, Mismatches: 8, Indels: 13
0.74 0.10 0.16
Matches are distributed among these distances:
22 16 0.27
23 2 0.03
24 4 0.07
25 20 0.33
26 1 0.02
27 14 0.23
28 3 0.05
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.32
Consensus pattern (23 bp):
ATTAAAAATATATACATAATATA
Found at i:26985173 original size:47 final size:50
Alignment explanation
Indices: 26985088--26985208 Score: 124
Period size: 48 Copynumber: 2.5 Consensus size: 50
26985078 TGTACATATA
* * * * *
26985088 TAAAAAATAAATACGTCATA-ATATTAAAAATATGTACATAATAT-A-GTG
1 TAAAAAATAAATACATAATATA-ATTAAAAATATATACATAAGATAACATG
*
26985136 TAAAAAATACATACATAATATAATT-AAAATATATACATAAGATAACATG
1 TAAAAAATAAATACATAATATAATTAAAAATATATACATAAGATAACATG
* *
26985185 TAAAAAATATATATATATATATAA
1 TAAAAAATAAATACATA-ATATAA
26985209 ATAATATAGT
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
47 16 0.26
48 21 0.34
49 18 0.30
50 6 0.10
ACGTcount: A:0.58, C:0.06, G:0.05, T:0.31
Consensus pattern (50 bp):
TAAAAAATAAATACATAATATAATTAAAAATATATACATAAGATAACATG
Found at i:26985229 original size:25 final size:25
Alignment explanation
Indices: 26985201--26985332 Score: 100
Period size: 25 Copynumber: 5.6 Consensus size: 25
26985191 ATATATATAT
*
26985201 ATATATAAATAATATAGTATTAAAG
1 ATATATACATAATATAGTATTAAAG
* *
26985226 ATATATACATAAAATAGTA-TAATAT
1 ATATATACATAATATAGTATTAA-AG
* * *
26985251 ATATATACGTAATATAGAATT-TAG
1 ATATATACATAATATAGTATTAAAG
* *
26985275 A-ATATACCTAATATA-T-TAAAAG
1 ATATATACATAATATAGTATTAAAG
* *
26985297 A-ATATATATAATATAATATT-AAG
1 ATATATACATAATATAGTATTAAAG
*
26985320 AAATATA-ATAATA
1 ATATATACATAATA
26985333 ACAAAAAAAG
Statistics
Matches: 86, Mismatches: 15, Indels: 14
0.75 0.13 0.12
Matches are distributed among these distances:
21 1 0.01
22 15 0.17
23 24 0.28
24 11 0.13
25 34 0.40
26 1 0.01
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.36
Consensus pattern (25 bp):
ATATATACATAATATAGTATTAAAG
Found at i:26985828 original size:18 final size:18
Alignment explanation
Indices: 26985805--26985858 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
26985795 ACAAGTGGTG
26985805 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
*
26985823 GT-G-G--AGT-AGG-TA
1 GTGGAGCAAGTGTGGCTA
26985835 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
26985853 GTGGAG
1 GTGGAG
26985859 TTGGTGGTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 4 0.14
13 3 0.11
14 4 0.14
16 4 0.14
17 3 0.11
18 10 0.36
ACGTcount: A:0.22, C:0.07, G:0.48, T:0.22
Consensus pattern (18 bp):
GTGGAGCAAGTGTGGCTA
Found at i:26993148 original size:21 final size:21
Alignment explanation
Indices: 26993122--26993162 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
26993112 AAACGAGCAA
* *
26993122 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
26993143 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
26993163 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:26998559 original size:13 final size:13
Alignment explanation
Indices: 26998525--26998557 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
26998515 ACAACGACAG
26998525 CTTTCTTTTCTTT
1 CTTTCTTTTCTTT
26998538 CTTTCTTTT-TTT
1 CTTTCTTTTCTTT
26998550 -TTTCTTTT
1 CTTTCTTTT
26998558 TTCTAAATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 8 0.40
12 3 0.15
13 9 0.45
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (13 bp):
CTTTCTTTTCTTT
Found at i:26999322 original size:19 final size:18
Alignment explanation
Indices: 26999298--26999340 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
26999288 ATAAAAAAGT
26999298 ATAATTTTATAATTTTTTA
1 ATAATTTT-TAATTTTTTA
*
26999317 ATAATTTTTATTTTTTTA
1 ATAATTTTTAATTTTTTA
26999335 A-AATTT
1 ATAATTT
26999341 AAAAAAGTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 5 0.22
18 10 0.43
19 8 0.35
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
ATAATTTTTAATTTTTTA
Found at i:27002738 original size:41 final size:41
Alignment explanation
Indices: 27002693--27002773 Score: 162
Period size: 41 Copynumber: 2.0 Consensus size: 41
27002683 CATGTAAGTT
27002693 AATCTATTTATTTTTAAATAAAAATAGTTTAATAAAATTAA
1 AATCTATTTATTTTTAAATAAAAATAGTTTAATAAAATTAA
27002734 AATCTATTTATTTTTAAATAAAAATAGTTTAATAAAATTA
1 AATCTATTTATTTTTAAATAAAAATAGTTTAATAAAATTA
27002774 TCTTAAAATA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (41 bp):
AATCTATTTATTTTTAAATAAAAATAGTTTAATAAAATTAA
Found at i:27006297 original size:115 final size:116
Alignment explanation
Indices: 27006162--27006394 Score: 459
Period size: 115 Copynumber: 2.0 Consensus size: 116
27006152 GAAATTTTGA
27006162 AAATTAAAAACTTGAAAAAACACTAAACTCAAAATCTCACTATAAATCACCGACATAAAATAATT
1 AAATTAAAAACTTGAAAAAACACTAAACTCAAAATCTCACTATAAATCACCGACATAAAATAATT
27006227 TAAATTCAAAATTAATTAAAGTACAATTCAATCAAAATCCT-AAAAAAATG
66 TAAATTCAAAATTAATTAAAGTACAATTCAATCAAAATCCTAAAAAAAATG
27006277 AAATTAAAAACTTGAAAAAACACTAAACTCAAAATCTCACTATAAATCACCGACATAAAATAATT
1 AAATTAAAAACTTGAAAAAACACTAAACTCAAAATCTCACTATAAATCACCGACATAAAATAATT
27006342 TAAATTCAAAATTAATTAAAGTACAATTCAATCAAAATCCTAAAAAAAATG
66 TAAATTCAAAATTAATTAAAGTACAATTCAATCAAAATCCTAAAAAAAATG
27006393 AA
1 AA
27006395 GTTAGAATAC
Statistics
Matches: 117, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
115 106 0.91
116 11 0.09
ACGTcount: A:0.56, C:0.15, G:0.03, T:0.25
Consensus pattern (116 bp):
AAATTAAAAACTTGAAAAAACACTAAACTCAAAATCTCACTATAAATCACCGACATAAAATAATT
TAAATTCAAAATTAATTAAAGTACAATTCAATCAAAATCCTAAAAAAAATG
Found at i:27007213 original size:14 final size:14
Alignment explanation
Indices: 27007183--27007224 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
27007173 CTACAAGTCT
*
27007183 TTTTATTTTTTAT-
1 TTTTATTTTTAATA
27007196 TTTTATTTTTAATA
1 TTTTATTTTTAATA
* *
27007210 TTTTGTTTTTCATA
1 TTTTATTTTTAATA
27007224 T
1 T
27007225 ACATATTTGA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
13 12 0.48
14 13 0.52
ACGTcount: A:0.19, C:0.02, G:0.02, T:0.76
Consensus pattern (14 bp):
TTTTATTTTTAATA
Found at i:27028467 original size:40 final size:40
Alignment explanation
Indices: 27028263--27028467 Score: 218
Period size: 40 Copynumber: 5.1 Consensus size: 40
27028253 CGGAATTTAA
** * *
27028263 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGTACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * * *
27028303 CCGGTTATAGTAACTCGCGCAAATGCCTTCGGTACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
27028343 CCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
27028383 CCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTGGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
27028423 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
27028463 CCGGA
1 CCGGA
27028468 CATCATTCAA
Statistics
Matches: 143, Mismatches: 18, Indels: 8
0.85 0.11 0.05
Matches are distributed among these distances:
39 4 0.03
40 128 0.90
41 11 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:27036485 original size:40 final size:40
Alignment explanation
Indices: 27036339--27036471 Score: 232
Period size: 40 Copynumber: 3.3 Consensus size: 40
27036329 GCTACTCGTT
* *
27036339 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
27036379 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
27036419 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
27036459 CAAATGCCTTCGG
1 CAAATGCCTTCGG
27036472 ATCTTGGTTC
Statistics
Matches: 90, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
40 88 0.98
41 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:27036485 original size:80 final size:82
Alignment explanation
Indices: 27036339--27036524 Score: 238
Period size: 80 Copynumber: 2.3 Consensus size: 82
27036329 GCTACTCGTT
*
27036339 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
27036403 GATTTAGTAAC-TCGCA
66 GATATAGTAACTTAGCA
* ****
27036419 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAATGCCTTC-GGATCTTGGTTC
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* *
27036482 GGATATGGTCACTTAGCA
65 GGATATAGTAACTTAGCA
27036500 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
27036525 CATCATTCAA
Statistics
Matches: 92, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
79 3 0.03
80 79 0.86
81 10 0.11
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
GATATAGTAACTTAGCA
Found at i:27043298 original size:51 final size:51
Alignment explanation
Indices: 27043222--27043324 Score: 179
Period size: 51 Copynumber: 2.0 Consensus size: 51
27043212 GTGTCAACTA
* *
27043222 AAGTGTGTGCGTGTGGGGGGTAACATAAAAAACTTGTTTAATTGTTTCTAC
1 AAGTGTGTGCGTATGGGGGGTAACATAAAAAACTTGTTTAATTATTTCTAC
*
27043273 AAGTGTGTGCGTATGGGGGGTAACATAGAAAACTTGTTTAATTATTTCTAC
1 AAGTGTGTGCGTATGGGGGGTAACATAAAAAACTTGTTTAATTATTTCTAC
27043324 A
1 A
27043325 TTTTTTTCTT
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.29, C:0.10, G:0.26, T:0.35
Consensus pattern (51 bp):
AAGTGTGTGCGTATGGGGGGTAACATAAAAAACTTGTTTAATTATTTCTAC
Found at i:27055967 original size:29 final size:29
Alignment explanation
Indices: 27055934--27055993 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
27055924 AGGTATATAC
*
27055934 GTAAAACTCATAAGTAATGAGCTCGATAT
1 GTAAAACTCATAAGTAATAAGCTCGATAT
27055963 GTAAAACTCATAAGTAATAAGCTCGATAT
1 GTAAAACTCATAAGTAATAAGCTCGATAT
27055992 GT
1 GT
27055994 GATGAACTCT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.28
Consensus pattern (29 bp):
GTAAAACTCATAAGTAATAAGCTCGATAT
Found at i:27058337 original size:17 final size:17
Alignment explanation
Indices: 27058317--27058350 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
27058307 AGGTTTAGGT
27058317 TTAAAAATTTTAATTAA
1 TTAAAAATTTTAATTAA
*
27058334 TTAAAATTTTTAATTAA
1 TTAAAAATTTTAATTAA
27058351 AAAATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TTAAAAATTTTAATTAA
Found at i:27059512 original size:38 final size:38
Alignment explanation
Indices: 27059459--27059752 Score: 171
Period size: 38 Copynumber: 7.0 Consensus size: 38
27059449 TTTCAAATTA
* * *
27059459 ACATGTATAACCGTGGCATATCCACTTAGCACCAAGTT
1 ACATGTTTAAACGTGGCATATCCACTTAGCACCACGTT
*
27059497 ACATGTTTAAACGTGGTC-TATCCACTTAGCATCACGTT
1 ACATGTTTAAACGTGG-CATATCCACTTAGCACCACGTT
27059535 A-ATGAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTT
1 ACATG--T---T-TA---AA-CGTGGCATATCCACTTAGCACCACGTT
* * *
27059582 ACATGTTTAACCGTGGTATATCCACTTAGCACCATGTT
1 ACATGTTTAAACGTGGCATATCCACTTAGCACCACGTT
*
27059620 A-ATGAATCAATATATGTAACCGTGGCATATTCACTTAGCACCACGTT
1 ACATG--T---T-TA---AA-CGTGGCATATCCACTTAGCACCACGTT
*
27059667 ACATGTATCAATATGTGTAATCGTGGAATATCCACTTAGCACCACGTT
1 ACATGT-T---TA-----AA-CGTGGCATATCCACTTAGCACCACGTT
* * * *
27059715 ACATGTATAACCGTGGTATATCCACTTAGCACTACGTT
1 ACATGTTTAAACGTGGCATATCCACTTAGCACCACGTT
27059753 TTTTCATTCC
Statistics
Matches: 209, Mismatches: 19, Indels: 56
0.74 0.07 0.20
Matches are distributed among these distances:
37 6 0.03
38 84 0.40
39 5 0.02
42 4 0.02
43 5 0.02
44 4 0.02
46 9 0.04
47 50 0.24
48 42 0.20
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.31
Consensus pattern (38 bp):
ACATGTTTAAACGTGGCATATCCACTTAGCACCACGTT
Found at i:27059580 original size:47 final size:47
Alignment explanation
Indices: 27059515--27059715 Score: 249
Period size: 47 Copynumber: 4.4 Consensus size: 47
27059505 AAACGTGGTC
*
27059515 TATCCACTTAGCATCACGTTAATGAATCAATATATGTAACCGTGGCA
1 TATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGGCA
* *
27059562 TATCCACTTAGCACCACG-T--T--A-C-ATGT-T-TAACCGTGGTA
1 TATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGGCA
*
27059600 TATCCACTTAGCACCATGTTAATGAATCAATATATGTAACCGTGGCA
1 TATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGGCA
* * * * *
27059647 TATTCACTTAGCACCACGTTACATGTATCAATATGTGTAATCGTGGAA
1 TATCCACTTAGCACCACGTTA-ATGAATCAATATATGTAACCGTGGCA
27059695 TATCCACTTAGCACCACGTTA
1 TATCCACTTAGCACCACGTTA
27059716 CATGTATAAC
Statistics
Matches: 131, Mismatches: 13, Indels: 19
0.80 0.08 0.12
Matches are distributed among these distances:
38 27 0.21
39 2 0.02
40 3 0.02
41 2 0.02
42 1 0.01
43 1 0.01
44 2 0.02
45 3 0.02
46 2 0.02
47 46 0.35
48 42 0.32
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (47 bp):
TATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGGCA
Found at i:27059609 original size:85 final size:85
Alignment explanation
Indices: 27059466--27059672 Score: 360
Period size: 85 Copynumber: 2.4 Consensus size: 85
27059456 TTAACATGTA
* * *
27059466 TAACCGTGGCATATCCACTTAGCACCAAGTTACATGTTTAAACGTGGTCTATCCACTTAGCATCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAAACGTGGTATATCCACTTAGCACCA
27059531 CGTTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
*
27059551 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAAACGTGGTATATCCACTTAGCACCA
*
27059616 TGTTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
*
27059636 TAACCGTGGCATATTCACTTAGCACCACGTTACATGT
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGT
27059673 ATCAATATGT
Statistics
Matches: 116, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 116 1.00
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.30
Consensus pattern (85 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAAACGTGGTATATCCACTTAGCACCA
CGTTAATGAATCAATATATG
Found at i:27059692 original size:48 final size:48
Alignment explanation
Indices: 27059584--27059722 Score: 199
Period size: 48 Copynumber: 2.9 Consensus size: 48
27059574 ACCACGTTAC
* * * *
27059584 ATGTTTAACCGTGGTATATCCACTTAGCACCATGTTA-ATGAATCAAT
1 ATGTGTAACCGTGGAATATCCACTTAGCACCACGTTACATGTATCAAT
* * *
27059631 ATATGTAACCGTGGCATATTCACTTAGCACCACGTTACATGTATCAAT
1 ATGTGTAACCGTGGAATATCCACTTAGCACCACGTTACATGTATCAAT
*
27059679 ATGTGTAATCGTGGAATATCCACTTAGCACCACGTTACATGTAT
1 ATGTGTAACCGTGGAATATCCACTTAGCACCACGTTACATGTAT
27059723 AACCGTGGTA
Statistics
Matches: 81, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
47 32 0.40
48 49 0.60
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (48 bp):
ATGTGTAACCGTGGAATATCCACTTAGCACCACGTTACATGTATCAAT
Found at i:27060150 original size:13 final size:13
Alignment explanation
Indices: 27060132--27060160 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
27060122 GGTTGTTTAT
27060132 TAAACTAATTAAC
1 TAAACTAATTAAC
27060145 TAAACTAATTAAC
1 TAAACTAATTAAC
27060158 TAA
1 TAA
27060161 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:27060954 original size:28 final size:28
Alignment explanation
Indices: 27060914--27060969 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
27060904 TCATACTTAG
27060914 GGTGTTTATATAGGCTTTGGATTGGCTT
1 GGTGTTTATATAGGCTTTGGATTGGCTT
27060942 GGTGTTTATATAGGCTTTGGATTGGCTT
1 GGTGTTTATATAGGCTTTGGATTGGCTT
27060970 TCTTCTTCCC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.14, C:0.07, G:0.32, T:0.46
Consensus pattern (28 bp):
GGTGTTTATATAGGCTTTGGATTGGCTT
Found at i:27063120 original size:6 final size:6
Alignment explanation
Indices: 27063111--27063153 Score: 54
Period size: 6 Copynumber: 7.5 Consensus size: 6
27063101 AATAAAATTG
* *
27063111 AAATGA AAATAA AAATAA AAATAA AAA-AA TAA-AA AAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAA
27063154 GATAAGAGGG
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
5 8 0.24
6 25 0.76
ACGTcount: A:0.84, C:0.00, G:0.02, T:0.14
Consensus pattern (6 bp):
AAATAA
Found at i:27063140 original size:8 final size:8
Alignment explanation
Indices: 27063127--27063158 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
27063117 AAATAAAAAT
27063127 AAAAATAA
1 AAAAATAA
27063135 AAAAATAA
1 AAAAATAA
27063143 AAAAATAA
1 AAAAATAA
*
27063151 AAAGATAA
1 AAAAATAA
27063159 GAGGGTTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.84, C:0.00, G:0.03, T:0.12
Consensus pattern (8 bp):
AAAAATAA
Found at i:27070950 original size:52 final size:51
Alignment explanation
Indices: 27070893--27071024 Score: 176
Period size: 50 Copynumber: 2.6 Consensus size: 51
27070883 ATGAACAAAT
* *
27070893 GAGTTACTTAATGCATGACTTAATTTAATGATGCAAACTTTAACTAACATGG
1 GAGTTACATAATGCATGACTTAATTTAATGATGCAAAC-TTAACTAACATGA
* * *
27070945 GAGTTACATAGTGCATGTCATAATTT-ATGATGCAAACTTAACTAACATGA
1 GAGTTACATAATGCATGACTTAATTTAATGATGCAAACTTAACTAACATGA
* * *
27070995 AAGTTACATAATGCATGACTTTATTAAATG
1 GAGTTACATAATGCATGACTTAATTTAATG
27071025 TAAAACACAT
Statistics
Matches: 68, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
50 32 0.47
51 14 0.21
52 22 0.32
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34
Consensus pattern (51 bp):
GAGTTACATAATGCATGACTTAATTTAATGATGCAAACTTAACTAACATGA
Found at i:27072880 original size:18 final size:19
Alignment explanation
Indices: 27072853--27072916 Score: 60
Period size: 19 Copynumber: 3.4 Consensus size: 19
27072843 TAAGTAATTA
27072853 AGTTGTTTTAATTTTATTT
1 AGTTGTTTTAATTTTATTT
* * *
27072872 AGTTG-TTTAA-ATAAATT
1 AGTTGTTTTAATTTTATTT
* *
27072889 CGATTGTTTTAATTTTGTTT
1 AG-TTGTTTTAATTTTATTT
27072909 AGTTGTTT
1 AGTTGTTT
27072917 AAATAAATTC
Statistics
Matches: 33, Mismatches: 9, Indels: 6
0.69 0.19 0.12
Matches are distributed among these distances:
17 5 0.15
18 8 0.24
19 16 0.48
20 4 0.12
ACGTcount: A:0.23, C:0.02, G:0.14, T:0.61
Consensus pattern (19 bp):
AGTTGTTTTAATTTTATTT
Found at i:27072898 original size:37 final size:37
Alignment explanation
Indices: 27072855--27072927 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
27072845 AGTAATTAAG
27072855 TTGTTTTAATTTTATTTAGTTGTTTAAATAAATTCGA
1 TTGTTTTAATTTTATTTAGTTGTTTAAATAAATTCGA
*
27072892 TTGTTTTAATTTTGTTTAGTTGTTTAAATAAATTCG
1 TTGTTTTAATTTTATTTAGTTGTTTAAATAAATTCG
27072928 GCAATTAATA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.27, C:0.03, G:0.12, T:0.58
Consensus pattern (37 bp):
TTGTTTTAATTTTATTTAGTTGTTTAAATAAATTCGA
Found at i:27074126 original size:26 final size:25
Alignment explanation
Indices: 27074088--27074145 Score: 89
Period size: 26 Copynumber: 2.3 Consensus size: 25
27074078 TGTAATTTGA
27074088 TAAAAAATTGTAAAAAAAATTCCAT
1 TAAAAAATTGTAAAAAAAATTCCAT
* *
27074113 TAAAATAATTGTAAAAAAAATTTCGT
1 TAAAA-AATTGTAAAAAAAATTCCAT
27074139 TAAAAAA
1 TAAAAAA
27074146 ATCAGTATCT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 7 0.23
26 23 0.77
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.29
Consensus pattern (25 bp):
TAAAAAATTGTAAAAAAAATTCCAT
Found at i:27076203 original size:6 final size:6
Alignment explanation
Indices: 27076185--27076261 Score: 61
Period size: 6 Copynumber: 13.0 Consensus size: 6
27076175 AAGTGTTTGT
* * * *
27076185 AGAAAA AGTAAA AGAAAA AGAACAA GGAAAA A-AGAA AGAAAA AGACAA
1 AGAAAA AGAAAA AGAAAA AGAA-AA AGAAAA AGAAAA AGAAAA AGAAAA
* *
27076233 AG-AAA AGAAAA TCGAGAA A-AAAA AGAAAA
1 AGAAAA AGAAAA -AGAAAA AGAAAA AGAAAA
27076262 GGTGAGAAAA
Statistics
Matches: 54, Mismatches: 12, Indels: 10
0.71 0.16 0.13
Matches are distributed among these distances:
5 12 0.22
6 33 0.61
7 9 0.17
ACGTcount: A:0.75, C:0.04, G:0.18, T:0.03
Consensus pattern (6 bp):
AGAAAA
Found at i:27078598 original size:43 final size:44
Alignment explanation
Indices: 27078503--27078657 Score: 149
Period size: 43 Copynumber: 3.6 Consensus size: 44
27078493 ATTGAGATGC
* * *
27078503 GATTACATGTGAGACCATGTCTGGGACATTGGCAT-TGTATTGT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCTGTATTCT
27078546 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCAT-TATTCT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATC-TGTATTCT
* * * * * *
27078590 -ATTTCGTGTAAGACCCTATCTAGGACAGTGGCATC-G-ATATGT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCTGTAT-TCT
* * *
27078632 GATAACATGTAAGACCATATCTGGGA
1 GATTACGTGTAAGACCATGTCTGGGA
27078658 TATAACATTG
Statistics
Matches: 93, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
41 2 0.02
42 2 0.02
43 83 0.89
44 5 0.05
45 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.32
Consensus pattern (44 bp):
GATTACGTGTAAGACCATGTCTGGGACATTGGCATCTGTATTCT
Found at i:27101777 original size:63 final size:64
Alignment explanation
Indices: 27101697--27101864 Score: 177
Period size: 64 Copynumber: 2.7 Consensus size: 64
27101687 AGACATTATG
* * *
27101697 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAA-AGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
27101760 ATGTAGCTAGGTGGCATGCGTGGT-CCAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGATA
1 ATGTAGCTAGGTCGCATGGGTGGTACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGATA
27101824 A
64 A
*
27101825 ACTG--GCTAGGTCACATGGGTGGTACTAATGT-T-CACCATGT
1 A-TGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGT
27101865 GTACAGAGAG
Statistics
Matches: 85, Mismatches: 14, Indels: 13
0.76 0.12 0.12
Matches are distributed among these distances:
62 10 0.12
63 23 0.27
64 32 0.38
65 17 0.20
66 3 0.04
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:27104772 original size:46 final size:46
Alignment explanation
Indices: 27104705--27104876 Score: 185
Period size: 46 Copynumber: 3.7 Consensus size: 46
27104695 TGTAACCCGC
*
27104705 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGGCGTTCGCAT
* * *
27104751 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC--A-GGC--GTTCGCAT
* *
27104801 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGG-CGTTCGCAT
*
27104844 CCATAAGTGAACTC-GACTCAACTCAACGAGTTC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC
27104877 GGATGCTCAA
Statistics
Matches: 105, Mismatches: 11, Indels: 21
0.77 0.08 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 21 0.20
46 38 0.36
47 26 0.25
48 3 0.03
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGGCGTTCGCAT
Found at i:27104824 original size:93 final size:92
Alignment explanation
Indices: 27104712--27104882 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 92
27104702 CGCCCATAAG
*
27104712 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTC-GACTCAACTC
27104776 AACGAGTTCGGATGCCTAGTTACATCTCA
64 AACGAGTTCGGATGCCTAGTTACATCTCA
*
27104805 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGACTCAACTCAA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGACTCAACTCAA
27104870 CGAGTTCGGATGC
66 CGAGTTCGGATGC
27104883 TCAATCATCC
Statistics
Matches: 75, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
92 27 0.36
93 48 0.64
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCA
Found at i:27104898 original size:45 final size:46
Alignment explanation
Indices: 27104708--27104898 Score: 155
Period size: 46 Copynumber: 4.2 Consensus size: 46
27104698 AACCCGCCCA
* * * * *
27104708 TAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTC-GCATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-GGATGCTCATCATCC
27104753 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTACAT-C
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A--T-CATCC
* * *** *
27104802 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTC-GCATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCATCATCC
27104846 ATAAGTGAACTC-GACTCAACTCAACGAGTTCGGATGCTCAATCATCC
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ATCATCC
27104893 T-AGTGA
1 TAAGTGA
27104899 CATGTCACTT
Statistics
Matches: 116, Mismatches: 17, Indels: 25
0.73 0.11 0.16
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 34 0.29
46 37 0.32
47 34 0.29
48 3 0.03
49 1 0.01
50 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCATCATCC
Found at i:27112386 original size:93 final size:93
Alignment explanation
Indices: 27112274--27112445 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
27112264 CGCCCATAAG
*
27112274 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
27112338 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
27112367 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
27112432 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
27112446 TCAATCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:27112440 original size:46 final size:46
Alignment explanation
Indices: 27112267--27112442 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
27112257 TGTAACCCGC
* *
27112267 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
27112313 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
27112363 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
27112406 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
27112443 TGCTCAATCA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:27115584 original size:130 final size:130
Alignment explanation
Indices: 27115351--27115610 Score: 475
Period size: 130 Copynumber: 2.0 Consensus size: 130
27115341 ATGGTAATCC
* * *
27115351 CATCACGAAATCCATGGTAATCCTATTCCACTTCCACTTGGGGTCCATCACAGGCTGTAGCAAAC
1 CATCACGAAATCCATAGTAATCCTATTCCACTTCCACTTGGGGACCATCACAGGCTGTAACAAAC
27115416 CTGAAAGTACTTAGTGTTCAGCTTTGACTTGCTAACATATCAAGCATTTTGATACAAATTCGGAG
66 CTGAAAGTACTTAGTGTTCAGCTTTGACTTGCTAACATATCAAGCATTTTGATACAAATTCGGAG
*
27115481 CATCATGAAATCCATAGTAATCCTATTCCACTTCCACTTGGGGACCATCACAGGCTGTAACAAAC
1 CATCACGAAATCCATAGTAATCCTATTCCACTTCCACTTGGGGACCATCACAGGCTGTAACAAAC
*
27115546 CTGAAAGTACTTAGTGTTCAGCTTTGACTTGCTAACATATCAAGTATTTTGATACAAATTCGGAG
66 CTGAAAGTACTTAGTGTTCAGCTTTGACTTGCTAACATATCAAGCATTTTGATACAAATTCGGAG
27115611 ATGTCTCTTT
Statistics
Matches: 125, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
130 125 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (130 bp):
CATCACGAAATCCATAGTAATCCTATTCCACTTCCACTTGGGGACCATCACAGGCTGTAACAAAC
CTGAAAGTACTTAGTGTTCAGCTTTGACTTGCTAACATATCAAGCATTTTGATACAAATTCGGAG
Found at i:27120216 original size:54 final size:54
Alignment explanation
Indices: 27120154--27120259 Score: 158
Period size: 54 Copynumber: 2.0 Consensus size: 54
27120144 ATCATATAAA
* *
27120154 GCTCATTTTTGGTTACTGAAAGGTGTTAAACTTCCTATATTAGGTACTGGTGAG
1 GCTCATTTTTGGTTACTAAAAGGTGTTAAACATCCTATATTAGGTACTGGTGAG
* * * *
27120208 GCTCATTTTTTGTTACTAAAAGGTGTTGAACATCTTATTTTAGGTACTGGTG
1 GCTCATTTTTGGTTACTAAAAGGTGTTAAACATCCTATATTAGGTACTGGTG
27120260 GTCTCAGGAG
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 46 1.00
ACGTcount: A:0.24, C:0.12, G:0.23, T:0.42
Consensus pattern (54 bp):
GCTCATTTTTGGTTACTAAAAGGTGTTAAACATCCTATATTAGGTACTGGTGAG
Found at i:27145519 original size:28 final size:29
Alignment explanation
Indices: 27145433--27145523 Score: 105
Period size: 29 Copynumber: 3.2 Consensus size: 29
27145423 GAAAGCATGA
*
27145433 ATATGAAT-ATGACTTGGGCCTAATGGACC
1 ATATGAATGA-GACTTGGGCCTAATGGGCC
* * * *
27145462 ATACGAATGTGATTTGAGCCTAATGGGCC
1 ATATGAATGAGACTTGGGCCTAATGGGCC
*
27145491 ATATGAATGAGA-TTGGGCCTAGTGGGCC
1 ATATGAATGAGACTTGGGCCTAATGGGCC
27145519 ATATG
1 ATATG
27145524 CATGTATGTA
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
28 19 0.37
29 33 0.63
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (29 bp):
ATATGAATGAGACTTGGGCCTAATGGGCC
Found at i:27148311 original size:29 final size:28
Alignment explanation
Indices: 27148275--27148352 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
27148265 TCATGAGATT
27148275 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
27148305 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
27148332 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
27148353 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:27148570 original size:174 final size:174
Alignment explanation
Indices: 27148305--27148666 Score: 688
Period size: 174 Copynumber: 2.1 Consensus size: 174
27148295 AAATTGTACA
27148305 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
27148370 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCAACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCAACCTTACCGAGTCGA
27148435 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
27148479 GCACTAAGTGTGTGAGTTTAGAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
* *
27148544 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTATCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCAACCTTACCGAGTCGA
27148609 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
27148653 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
27148667 CGGTTGATTA
Statistics
Matches: 183, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 183 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCAACCTTACCGAGTCGA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:27156602 original size:29 final size:28
Alignment explanation
Indices: 27156566--27156643 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
27156556 TCATGAGATT
27156566 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
27156596 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
27156623 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
27156644 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:27156861 original size:174 final size:174
Alignment explanation
Indices: 27156596--27156957 Score: 706
Period size: 174 Copynumber: 2.1 Consensus size: 174
27156586 AAATTGTACA
27156596 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
27156661 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
27156726 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
27156770 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
*
27156835 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTATCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
27156900 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
27156944 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
27156958 CGGTTGATTA
Statistics
Matches: 185, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 185 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:27157041 original size:145 final size:145
Alignment explanation
Indices: 27156795--27157068 Score: 503
Period size: 145 Copynumber: 1.9 Consensus size: 145
27156785 GTTTAAAGTA
*
27156795 CATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
1 CATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
* * *
27156860 ATAAATTATTTACATTAAGGGTGCGACCTTATCGAGTCGATTTTGGACAGCGGAAAAGGTAAGTG
66 ATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGTG
27156925 TGCGAACTTGAAATG
131 TGCGAACTTGAAATG
27156940 CATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
1 CATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
*
27157005 ATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGT
66 ATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGT
27157069 ACCTTGAGTT
Statistics
Matches: 124, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
145 124 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (145 bp):
CATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
ATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGTG
TGCGAACTTGAAATG
Found at i:27165050 original size:28 final size:29
Alignment explanation
Indices: 27164968--27165057 Score: 137
Period size: 29 Copynumber: 3.1 Consensus size: 29
27164958 AAAGCATGAC
27164968 TATGAATGTGACTTGGGCCTAATGGGCCA
1 TATGAATGTGACTTGGGCCTAATGGGCCA
* *
27164997 TACGAATGTGATTTGGGCCTAATGGGCCA
1 TATGAATGTGACTTGGGCCTAATGGGCCA
* *
27165026 TATGAATGAGA-TTGGGCCTAGTGGGCCA
1 TATGAATGTGACTTGGGCCTAATGGGCCA
27165054 TATG
1 TATG
27165058 CAAAACTTGT
Statistics
Matches: 56, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
28 20 0.36
29 36 0.64
ACGTcount: A:0.24, C:0.16, G:0.32, T:0.28
Consensus pattern (29 bp):
TATGAATGTGACTTGGGCCTAATGGGCCA
Found at i:27169071 original size:43 final size:43
Alignment explanation
Indices: 27168981--27169077 Score: 113
Period size: 43 Copynumber: 2.3 Consensus size: 43
27168971 TGTGACTTTT
* * *
27168981 TGTAAGACCATGTCTAGGACACTGGCATTGATAAGAGATTACG
1 TGTAAGACCATGTCTAGGACACAGGCATTGATAAGAGATAACA
* * * * * *
27169024 TGTAAGACCCTGTCTAGGATAGAGGCATTGGTATGTGATAACA
1 TGTAAGACCATGTCTAGGACACAGGCATTGATAAGAGATAACA
27169067 TGTAAGACCAT
1 TGTAAGACCAT
27169078 ATCTGGGATA
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.27
Consensus pattern (43 bp):
TGTAAGACCATGTCTAGGACACAGGCATTGATAAGAGATAACA
Found at i:27169087 original size:43 final size:41
Alignment explanation
Indices: 27168981--27169104 Score: 104
Period size: 43 Copynumber: 2.9 Consensus size: 41
27168971 TGTGACTTTT
* * * * * * *
27168981 TGTAAGACCATGTCTAGGACACTGGCATTGATAAGAGATTACG
1 TGTAAGACCATATCTAGGATA-AGGCATT-ATATGTGATAACA
* * *
27169024 TGTAAGACCCTGTCTAGGATAGAGGCATTGGTATGTGATAACA
1 TGTAAGACCATATCTAGGATA-AGGCATT-ATATGTGATAACA
* *
27169067 TGTAAGACCATATCTGGGATATGGCATTATATGTGATA
1 TGTAAGACCATATCTAGGATAAGGCATTATATGTGATA
27169105 TAAGTGTTTC
Statistics
Matches: 67, Mismatches: 14, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
41 9 0.13
42 6 0.09
43 52 0.78
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (41 bp):
TGTAAGACCATATCTAGGATAAGGCATTATATGTGATAACA
Found at i:27174679 original size:46 final size:48
Alignment explanation
Indices: 27174527--27174791 Score: 239
Period size: 46 Copynumber: 5.6 Consensus size: 48
27174517 TCCATCAAGT
* *
27174527 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACATATC-CGTGC
1 CGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCT-ACATATCAAG-GC
* * ** *
27174577 CGATGCCATGTCCCAGACATGGTCTTACACT-G-AC-ACATTTTGTA-GT
1 CGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCTACA-TATCAAGGC
* *
27174623 CGATG-CATGTCCTAGACATGTCTTACACTGGCT-TACATCTCAAGGC
1 CGATGCCATGTCCCAGACATGTCTTACACTGGCTCTACATATCAAGGC
* * * *
27174669 CGATG-CATGTCCCAGACATGTCTTACACTAGCTCT-CGTCTCAATGC
1 CGATGCCATGTCCCAGACATGTCTTACACTGGCTCTACATATCAAGGC
* **
27174715 CGATGCCATGTCCCAGACATTGTCTTACACTTGCTCT-CATAAT-GTGGC
1 CGATGCCATGTCCCAGACA-TGTCTTACACTGGCTCTACAT-ATCAAGGC
27174763 CGATG-CATGTCCCAGACATGTCTTACACT
1 CGATGCCATGTCCCAGACATGTCTTACACT
27174792 AGCACACAAA
Statistics
Matches: 183, Mismatches: 22, Indels: 24
0.80 0.10 0.10
Matches are distributed among these distances:
44 10 0.05
45 17 0.09
46 69 0.38
47 29 0.16
48 26 0.14
49 1 0.01
50 31 0.17
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.29
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGTCTTACACTGGCTCTACATATCAAGGC
Found at i:27174739 original size:94 final size:92
Alignment explanation
Indices: 27174521--27174797 Score: 296
Period size: 94 Copynumber: 3.0 Consensus size: 92
27174511 GGCTCATCCA
* * * *
27174521 TCAAGTCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACATATCCGTGCCGATGCCAT
1 TCAAGCCGATGCCATGTCCCAGACATTGTCTTACACTGGCTCT-ACATATCAG-GCCGATG-CAT
*
27174586 GTCCCAGACATGGTCTTACACT-GACACATTT
63 GTCCCAGACAT-GTCTTACACTAG-CACATTC
** * * *
27174617 TGTAGTCGATG-CATGTCCTAGACA-TGTCTTACACTGGCT-TACATCTCAAGGCCGATGCATGT
1 TCAAGCCGATGCCATGTCCCAGACATTGTCTTACACTGGCTCTACATATC-AGGCCGATGCATGT
*
27174679 CCCAGACATGTCTTACACTAGCTC-TCGTC
65 CCCAGACATGTCTTACACTAGCACAT--TC
* **
27174708 TCAATGCCGATGCCATGTCCCAGACATTGTCTTACACTTGCTCT-CATAATGTGGCCGATGCATG
1 TCAA-GCCGATGCCATGTCCCAGACATTGTCTTACACTGGCTCTACAT-ATCAGGCCGATGCATG
27174772 TCCCAGACATGTCTTACACTAGCACA
64 TCCCAGACATGTCTTACACTAGCACA
27174798 CAAATGACCC
Statistics
Matches: 153, Mismatches: 18, Indels: 21
0.80 0.09 0.11
Matches are distributed among these distances:
89 1 0.01
90 12 0.08
91 18 0.12
92 19 0.12
93 14 0.09
94 66 0.43
95 14 0.09
96 9 0.06
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.28
Consensus pattern (92 bp):
TCAAGCCGATGCCATGTCCCAGACATTGTCTTACACTGGCTCTACATATCAGGCCGATGCATGTC
CCAGACATGTCTTACACTAGCACATTC
Found at i:27174781 original size:140 final size:141
Alignment explanation
Indices: 27174527--27174791 Score: 358
Period size: 140 Copynumber: 1.9 Consensus size: 141
27174517 TCCATCAAGT
**
27174527 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACATATCCGTGCCGATGCCATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCT-ACATATCAATGCCGATGCCATGTCCCA
** * *
27174592 GACATGGTCTTACACTGACACATTTTGTAGTCGATGCATGTCCTAGACATGTCTTACACTGGCTT
65 GACATGGTCTTACACTGACACATAATGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTT
27174657 ACATCTCAAGGC
130 ACATCTCAAGGC
* *
27174669 CGATG-CATGTCCCAGACAT-GTCTTACACT-AGCTCT-CGTCTCAATGCCGATGCCATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGA-CTCTACATATCAATGCCGATGCCATGTCCCA
* * * *
27174730 GACATTGTCTTACACTTGCTCTCATAATGTGGCCGATGCATGTCCCAGACATGTCTTACACT
65 GACATGGTCTTACAC-TG-ACACATAATGTAGCCGATGCATGTCCCAGACATGTCTTACACT
27174792 AGCACACAAA
Statistics
Matches: 108, Mismatches: 12, Indels: 8
0.84 0.09 0.06
Matches are distributed among these distances:
138 36 0.33
139 3 0.03
140 50 0.46
141 14 0.13
142 5 0.05
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.29
Consensus pattern (141 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTACATATCAATGCCGATGCCATGTCCCAG
ACATGGTCTTACACTGACACATAATGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTA
CATCTCAAGGC
Found at i:27178644 original size:30 final size:30
Alignment explanation
Indices: 27178555--27178644 Score: 80
Period size: 30 Copynumber: 3.0 Consensus size: 30
27178545 TGAACCGACA
27178555 TGTACC-AAAAATTAA-TTTAAAATATATT
1 TGTACCAAAAAATTAATTTTAAAATATATT
* *** *
27178583 T-TA-CATTAAAATTCAAATTTTATTTTCTATT
1 TGTACCA-AAAAATT--AATTTTAAAATATATT
27178614 TGTACCAAAAAATTAATTTTAAAATATATT
1 TGTACCAAAAAATTAATTTTAAAATATATT
27178644 T
1 T
27178645 TAAATTTAAA
Statistics
Matches: 45, Mismatches: 10, Indels: 12
0.67 0.15 0.18
Matches are distributed among these distances:
26 1 0.02
27 2 0.04
28 7 0.16
30 15 0.33
31 10 0.22
32 8 0.18
33 2 0.04
ACGTcount: A:0.44, C:0.08, G:0.02, T:0.46
Consensus pattern (30 bp):
TGTACCAAAAAATTAATTTTAAAATATATT
Found at i:27180466 original size:28 final size:30
Alignment explanation
Indices: 27180434--27180491 Score: 75
Period size: 31 Copynumber: 2.0 Consensus size: 30
27180424 AAATGTTTGA
27180434 ATTTTA-T-ATAAAAATATATTTTAATAAT
1 ATTTTATTAATAAAAATATATTTTAATAAT
* *
27180462 ATTTTATTAAATGAAAATATTTTTTAATAA
1 ATTTTATT-AATAAAAATATATTTTAATAA
27180492 ATGAAATTGC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 6 0.24
29 1 0.04
31 18 0.72
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (30 bp):
ATTTTATTAATAAAAATATATTTTAATAAT
Found at i:27180480 original size:21 final size:20
Alignment explanation
Indices: 27180460--27180497 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
27180450 TATTTTAATA
*
27180460 ATATTTTATTAAATGAAAAT
1 ATATTTTAATAAATGAAAAT
*
27180480 ATTTTTTAATAAATGAAA
1 ATATTTTAATAAATGAAA
27180498 TTGCAGTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (20 bp):
ATATTTTAATAAATGAAAAT
Found at i:27184707 original size:20 final size:20
Alignment explanation
Indices: 27184641--27184698 Score: 98
Period size: 20 Copynumber: 2.9 Consensus size: 20
27184631 ATTTTGATAA
*
27184641 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
27184661 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
27184681 ACATGATATGTATGATAT
1 ACATGATATGTATGATAT
27184699 ACACGTGATG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Done.