Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 82 of 344
Found at i:27184813 original size:24 final size:23
Alignment explanation
Indices: 27184757--27184908 Score: 214
Period size: 24 Copynumber: 6.4 Consensus size: 23
27184747 GAGGAAGTGA
*
27184757 AAAAGGGCTTAGGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
27184780 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
27184803 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
27184827 CAAAAGGGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
27184851 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
27184874 AAAAAGGGCTTTTGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTA-T
27184899 AAAAGAGGCT
1 AAAAG-GGCT
27184909 AGGCCTCTAG
Statistics
Matches: 117, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
23 42 0.36
24 70 0.60
25 5 0.04
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:27184826 original size:47 final size:47
Alignment explanation
Indices: 27184757--27184908 Score: 216
Period size: 47 Copynumber: 3.2 Consensus size: 47
27184747 GAGGAAGTGA
* *
27184757 AAAAGGGCTTAGGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
* *
27184803 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
* *
27184851 TAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTA-T
27184899 AAAAGAGGCT
1 AAAAG-GGCT
27184909 AGGCCTCTAG
Statistics
Matches: 94, Mismatches: 8, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
47 64 0.68
48 26 0.28
49 4 0.04
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
Found at i:27184873 original size:71 final size:71
Alignment explanation
Indices: 27184757--27184908 Score: 259
Period size: 71 Copynumber: 2.1 Consensus size: 71
27184747 GAGGAAGTGA
* *
27184757 AAAAGGGCTTAGGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
27184822 GTTATC
66 GTTATC
*
27184828 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
*
27184893 GTTATT
66 GTTATC
27184899 AAAAGAGGCT
1 AAAAG-GGCT
27184909 AGGCCTCTAG
Statistics
Matches: 76, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
71 72 0.95
72 4 0.05
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (71 bp):
AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
GTTATC
Found at i:27185152 original size:31 final size:31
Alignment explanation
Indices: 27185117--27185179 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
27185107 GTTTACAGTC
* *
27185117 AAGGCTTTGGCCCAGTAATATGAAATTTGAA
1 AAGGCTTCGGCCCAGTAATATGAAATATGAA
**
27185148 AAGGCTTCGGCCCAGTGTTATGAAATATGAA
1 AAGGCTTCGGCCCAGTAATATGAAATATGAA
27185179 A
1 A
27185180 TATGAAAAGG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (31 bp):
AAGGCTTCGGCCCAGTAATATGAAATATGAA
Found at i:27187777 original size:37 final size:37
Alignment explanation
Indices: 27187721--27187826 Score: 176
Period size: 37 Copynumber: 2.9 Consensus size: 37
27187711 TCAGACGAAG
* *
27187721 TCTCCACACGAAGTTATCGGGTCTTACCCGGACAAAA
1 TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
*
27187758 TCTCCACACGTAGTCATCGGGTCTTACCCGGACATAA
1 TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
*
27187795 TCTCCATACGTAGTCATCGGGTCTTACCCGGA
1 TCTCCACACGTAGTCATCGGGTCTTACCCGGA
27187827 ATATATTTCC
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.25
Consensus pattern (37 bp):
TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
Found at i:27188029 original size:50 final size:48
Alignment explanation
Indices: 27187972--27188115 Score: 182
Period size: 50 Copynumber: 2.9 Consensus size: 48
27187962 GCACATCGCC
*
27187972 TACATATTTCACACTAGCTATTCGGCTTTACCACATATA-CATATCTCATA
1 TACATATTTCACA-TAGCCATTCGGCTTTACCACATATAGCATATCTC--A
* * *
27188022 TATATATTTCACATTGACCATTCGGATTTACCACATATATGCATATCTCA
1 TACATATTTCACATAG-CCATTCGGCTTTACCACATATA-GCATATCTCA
27188072 TACATATTTCACATTAGCCATTCGGCTTTACCACATATATGCAT
1 TACATATTTCACA-TAGCCATTCGGCTTTACCACATATA-GCAT
27188116 GTTCATATTC
Statistics
Matches: 83, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
49 2 0.02
50 71 0.86
51 2 0.02
52 8 0.10
ACGTcount: A:0.31, C:0.24, G:0.08, T:0.37
Consensus pattern (48 bp):
TACATATTTCACATAGCCATTCGGCTTTACCACATATAGCATATCTCA
Found at i:27188152 original size:22 final size:22
Alignment explanation
Indices: 27188126--27188197 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
27188116 GTTCATATTC
27188126 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
27188148 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
27188172 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
27188195 ATC
1 ATC
27188198 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:27188154 original size:47 final size:47
Alignment explanation
Indices: 27188030--27188226 Score: 225
Period size: 47 Copynumber: 4.1 Consensus size: 47
27188020 TATATATATT
* ** *
27188030 TCACATTGACCATTCGGATTTACCACATATATGCATATCTCATACATAT-T
1 TCACATTGGCCATTCGGCCTTACCACATATATGCATAT-TC--ACAT-TCA
* * * *
27188080 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTACCACATATATGCATATTCACATTCA
* *
27188127 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTACCACATATATGCATATTCACATTCA
* * * *
27188174 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTACCACATATATGCATATTCACATTCA
27188221 TCACAT
1 TCACAT
27188227 AAAATCCTAA
Statistics
Matches: 132, Mismatches: 14, Indels: 5
0.87 0.09 0.03
Matches are distributed among these distances:
46 1 0.01
47 95 0.72
49 2 0.02
50 34 0.26
ACGTcount: A:0.28, C:0.27, G:0.10, T:0.35
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTACCACATATATGCATATTCACATTCA
Found at i:27192204 original size:40 final size:40
Alignment explanation
Indices: 27192172--27192442 Score: 427
Period size: 40 Copynumber: 6.8 Consensus size: 40
27192162 CCAGCATGAT
* * * *
27192172 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
27192212 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCAC-AA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
27192251 TGCTCTTCGGGACTTAGTCTGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
27192291 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
27192331 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
27192371 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
27192411 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
27192443 CTCAATTCTC
Statistics
Matches: 215, Mismatches: 15, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
39 37 0.17
40 178 0.83
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:27193743 original size:37 final size:37
Alignment explanation
Indices: 27193693--27193801 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
27193683 CTTTAGCTCA
* *
27193693 GACAAAATCTCCACACGAAGTTATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
27193730 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
*
27193767 GACATAATCTCCACACGTAGTCATCGGGTCTTACC
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACC
27193802 AGGAATATAT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (37 bp):
GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
Found at i:27194079 original size:50 final size:50
Alignment explanation
Indices: 27193951--27194143 Score: 193
Period size: 50 Copynumber: 3.9 Consensus size: 50
27193941 GCACATCGCC
* *
27193951 TACATATTTCACACTATCCATTCGGCTTTACCACATATA--CATATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATATGCATATCTC----A
*
27194003 TATATATTTCACATT-GACCATTCGGCTTTACCACATATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATATGCATATCTCA
* *
27194053 TACATATTTCACATTAGCCATTCGGCTTTACCACATATATCCATGT-TCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATATGCATATCTCA
* * * * *
27194102 T--AT-TCATCACATTGGCCATTCGACCTTATCACATATATGCAT
1 TACATAT-TTCACATTAGCCATTCGGCTTTACCACATATATGCAT
27194144 GTTCACATTC
Statistics
Matches: 124, Mismatches: 12, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
46 1 0.01
47 33 0.27
49 4 0.03
50 42 0.34
51 1 0.01
52 35 0.28
54 8 0.06
ACGTcount: A:0.30, C:0.26, G:0.07, T:0.37
Consensus pattern (50 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATATGCATATCTCA
Found at i:27194112 original size:25 final size:25
Alignment explanation
Indices: 27194084--27194160 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 25
27194074 TCGGCTTTAC
*
27194084 CACATATATCCATGTTCATATTCAT
1 CACATATATCCATGTTCACATTCAT
** *
27194109 CACAT-TGGCCA--TTCGACCTT-AT
1 CACATATATCCATGTTC-ACATTCAT
*
27194131 CACATATATGCATGTTCACATTCAT
1 CACATATATCCATGTTCACATTCAT
27194156 CACAT
1 CACAT
27194161 TGGCCATTCG
Statistics
Matches: 39, Mismatches: 8, Indels: 10
0.68 0.14 0.18
Matches are distributed among these distances:
22 10 0.26
23 6 0.15
24 8 0.21
25 15 0.38
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.35
Consensus pattern (25 bp):
CACATATATCCATGTTCACATTCAT
Found at i:27194133 original size:22 final size:22
Alignment explanation
Indices: 27194107--27194178 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
27194097 GTTCATATTC
27194107 ATCACATTGGCCATTCGACCTT
1 ATCACATTGGCCATTCGACCTT
* *
27194129 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGACCTT
*
27194153 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGACCTT
27194176 ATC
1 ATC
27194179 TCATATATAC
Statistics
Matches: 38, Mismatches: 5, Indels: 14
0.67 0.09 0.25
Matches are distributed among these distances:
22 13 0.34
23 7 0.18
24 8 0.21
25 10 0.26
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGACCTT
Found at i:27194135 original size:47 final size:47
Alignment explanation
Indices: 27194011--27194207 Score: 207
Period size: 47 Copynumber: 4.1 Consensus size: 47
27194001 TATATATATT
* * * * * *
27194011 TCACATTGACCATTCGGCTTTACCACATATATGCATATCTCATACATAT-T
1 TCACATTGGCCATTCGGCCTTATCACATATATACATGT-TC--ACAT-TCA
* * * * *
27194061 TCACATTAGCCATTCGGCTTTACCACATATATCCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCA
* *
27194108 TCACATTGGCCATTCGACCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCA
* **
27194155 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCA
27194202 TCACAT
1 TCACAT
27194208 AAAATCCTAA
Statistics
Matches: 129, Mismatches: 17, Indels: 5
0.85 0.11 0.03
Matches are distributed among these distances:
46 1 0.01
47 92 0.71
49 2 0.02
50 34 0.26
ACGTcount: A:0.28, C:0.28, G:0.09, T:0.35
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCA
Found at i:27194201 original size:94 final size:96
Alignment explanation
Indices: 27194011--27194207 Score: 229
Period size: 94 Copynumber: 2.1 Consensus size: 96
27194001 TATATATATT
* * *
27194011 TCACATTGACCATTCGGCTTTACCACATATATGCATATCTCATACATATTTCACATTAGCCATTC
1 TCACATTGACCATTCGACCTTACCACATATATGCATATCTCA-ACATATATCACATTAGCCATTC
* * ** *
27194076 GGCTTTACCACATATATCCATGTTCATATTCA
65 GGCCTTACCACATATATACACATTCACATTCA
* * * *
27194108 TCACATTGGCCATTCGACCTTATCACATATATGCATGT-TC-ACAT-TCATCACATTGGCCATTC
1 TCACATTGACCATTCGACCTTACCACATATATGCATATCTCAACATAT-ATCACATTAGCCATTC
* *
27194170 GGCCTTATCTCATATATACACATTCACATTCA
65 GGCCTTACCACATATATACACATTCACATTCA
27194202 TCACAT
1 TCACAT
27194208 AAAATCCTAA
Statistics
Matches: 85, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
93 1 0.01
94 49 0.58
96 2 0.02
97 33 0.39
ACGTcount: A:0.28, C:0.28, G:0.09, T:0.35
Consensus pattern (96 bp):
TCACATTGACCATTCGACCTTACCACATATATGCATATCTCAACATATATCACATTAGCCATTCG
GCCTTACCACATATATACACATTCACATTCA
Found at i:27196947 original size:98 final size:98
Alignment explanation
Indices: 27196769--27196950 Score: 301
Period size: 98 Copynumber: 1.9 Consensus size: 98
27196759 GTTGTTTCTC
* *
27196769 GTCCTCAAGTAAACGAAAAACAGAAACAAAAATAGACAAGCTAAAAATAAGATGAAAAGAAAACA
1 GTCCTCAAGTAAACGAAAAACAGAAACAAAAATAGACAAACTAAAAATAAGAAGAAAAGAAAACA
* *
27196834 CATTATTAAAACTAAAGTACTAAGCCATTGCTT
66 CATGACTAAAACTAAAGTACTAAGCCATTGCTT
* *
27196867 GTCCTCAAGTAAATGAAAAACAGAAACAAAAATAGACAAACTAGAAATAAGAAGAAAAGAAAACA
1 GTCCTCAAGTAAACGAAAAACAGAAACAAAAATAGACAAACTAAAAATAAGAAGAAAAGAAAACA
*
27196932 CATGACTAAAGCTAAAGTA
66 CATGACTAAAACTAAAGTA
27196951 TTTGAGCAAA
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
98 77 1.00
ACGTcount: A:0.57, C:0.14, G:0.13, T:0.16
Consensus pattern (98 bp):
GTCCTCAAGTAAACGAAAAACAGAAACAAAAATAGACAAACTAAAAATAAGAAGAAAAGAAAACA
CATGACTAAAACTAAAGTACTAAGCCATTGCTT
Found at i:27199995 original size:44 final size:44
Alignment explanation
Indices: 27199903--27200026 Score: 153
Period size: 44 Copynumber: 2.8 Consensus size: 44
27199893 TATGTCAAAC
* * *
27199903 TCCATGGTTGTACTATGACAATTAAGGAAGAATTGACAGAAAAT
1 TCCATGGTTGTACCATGGCAATTAAGGAAGAATTGACAGAAAAG
27199947 TCCATGGTTGTACCATGGCAATTAAGGAAGAATTGAC-GAAAAAG
1 TCCATGGTTGTACCATGGCAATTAAGGAAGAATTGACAG-AAAAG
* * * *
27199991 TCCAT-GTTCATAACATGGCATTTAAGGAGGAATTGA
1 TCCATGGTT-GTACCATGGCAATTAAGGAAGAATTGA
27200027 GGTTAAGGAT
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
43 4 0.06
44 67 0.94
ACGTcount: A:0.38, C:0.13, G:0.23, T:0.27
Consensus pattern (44 bp):
TCCATGGTTGTACCATGGCAATTAAGGAAGAATTGACAGAAAAG
Found at i:27200227 original size:47 final size:47
Alignment explanation
Indices: 27200165--27200286 Score: 199
Period size: 47 Copynumber: 2.6 Consensus size: 47
27200155 GCATTAGCAC
*
27200165 TAAGACAAGGTTACCATGTAAGACCATGTTTAGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTAGAACATGGCATTTGG
* *
27200212 TAAGACAAGGATACCATGTAAGATCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTAGAACATGGCATTTGG
* *
27200259 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
27200287 CCAAGGCATG
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.36, C:0.13, G:0.24, T:0.27
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTAGAACATGGCATTTGG
Found at i:27200394 original size:55 final size:54
Alignment explanation
Indices: 27200265--27200458 Score: 239
Period size: 54 Copynumber: 3.6 Consensus size: 54
27200255 TTGGTAAGAT
* *
27200265 AAGGATATCATGTAAGACCATGCCAAGGCATGACATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGACATTGATAAGTTCTATAAGGC
* * * *
27200319 AAGGAAATCATGTAAGACCATGTCAAGACATGACATTGATAAGTTACTGTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGACATTGATAAGTT-CTATAAGGC
* * * * *
27200374 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGACATTGATAAGTTCTATAAGGC
* *
27200427 AAGGATACCACGTAAGACCATGTCAAGACATG
1 AAGGATACCATGTAAGACCATGCCAAGACATG
27200459 GCAATGGTAA
Statistics
Matches: 120, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
52 4 0.03
53 29 0.24
54 43 0.36
55 40 0.33
56 4 0.03
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGACATTGATAAGTTCTATAAGGC
Found at i:27200471 original size:108 final size:109
Alignment explanation
Indices: 27200273--27200471 Score: 310
Period size: 108 Copynumber: 1.8 Consensus size: 109
27200263 ATAAGGATAT
* *
27200273 CATGTAAGACCATGCCAAGGCATGACATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGACATTGATAAGTTCTATAAGGCAAGGAAACCACGTAAGACC
*
27200338 ATGTCAAGACATGACATTGATAAGTTACTGTAAGGCAAAGGTCC
66 ATGTCAAGACATGACAATGATAAGTTACTGTAAGGCAAAGGTCC
* * * *
27200382 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATACCACGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGACATTGATAAGTTCTATAAGGCAAGGAAACCACGTAAGACC
* *
27200446 ATGTCAAGACATGGCAATGGTAAGTT
66 ATGTCAAGACATGACAATGATAAGTT
27200472 TAAAAAGGAA
Statistics
Matches: 81, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
108 46 0.57
109 35 0.43
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (109 bp):
CATGTAAGACCATGCCAAGGCATGACATTGATAAGTTCTATAAGGCAAGGAAACCACGTAAGACC
ATGTCAAGACATGACAATGATAAGTTACTGTAAGGCAAAGGTCC
Found at i:27204491 original size:28 final size:28
Alignment explanation
Indices: 27204459--27204573 Score: 101
Period size: 29 Copynumber: 4.0 Consensus size: 28
27204449 TACCTGTATT
*
27204459 TGGCCCACTAAGCCC-AATCATATTCATA
1 TGGCCCA-TAAGCCCAAATCACATTCATA
* *
27204487 TGGCCCATTAGACCCAAATCACCTGT-ATA
1 TGGCCCATAAG-CCCAAATCACAT-TCATA
* *
27204516 TGGCCCATTAGGCCCAAATCACATTGATA
1 TGGCCCA-TAAGCCCAAATCACATTCATA
* *
27204545 TGGCCCA-ATAGGCCAAGTCACATTCATA
1 TGGCCCATA-AGCCCAAATCACATTCATA
27204573 T
1 T
27204574 TCATGCTCAC
Statistics
Matches: 71, Mismatches: 10, Indels: 12
0.76 0.11 0.13
Matches are distributed among these distances:
27 4 0.06
28 27 0.38
29 37 0.52
30 3 0.04
ACGTcount: A:0.31, C:0.30, G:0.15, T:0.24
Consensus pattern (28 bp):
TGGCCCATAAGCCCAAATCACATTCATA
Found at i:27204516 original size:29 final size:29
Alignment explanation
Indices: 27204474--27204573 Score: 105
Period size: 29 Copynumber: 3.5 Consensus size: 29
27204464 CACTAAGCCC
* *
27204474 AATCATATTCATATGGCCCATTAGACCCA
1 AATCACATTGATATGGCCCATTAGACCCA
* *
27204503 AATCAC-CTGTATATGGCCCATTAGGCCCA
1 AATCACATTG-ATATGGCCCATTAGACCCA
* *
27204532 AATCACATTGATATGGCCCAATAG-GCCA
1 AATCACATTGATATGGCCCATTAGACCCA
* *
27204560 AGTCACATTCATAT
1 AATCACATTGATAT
27204574 TCATGCTCAC
Statistics
Matches: 60, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 16 0.27
29 42 0.70
30 2 0.03
ACGTcount: A:0.33, C:0.27, G:0.14, T:0.26
Consensus pattern (29 bp):
AATCACATTGATATGGCCCATTAGACCCA
Found at i:27205959 original size:16 final size:16
Alignment explanation
Indices: 27205938--27205987 Score: 73
Period size: 16 Copynumber: 3.1 Consensus size: 16
27205928 AGAAAATTTG
27205938 GGATTTCAGGATTTTT
1 GGATTTCAGGATTTTT
**
27205954 GGATTTTTGGATTTTT
1 GGATTTCAGGATTTTT
*
27205970 GGATTTCGGGATTTTT
1 GGATTTCAGGATTTTT
27205986 GG
1 GG
27205988 GGCGTTACAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.14, C:0.04, G:0.30, T:0.52
Consensus pattern (16 bp):
GGATTTCAGGATTTTT
Found at i:27205960 original size:7 final size:8
Alignment explanation
Indices: 27205946--27205987 Score: 66
Period size: 8 Copynumber: 5.2 Consensus size: 8
27205936 TGGGATTTCA
27205946 GGATTTTT
1 GGATTTTT
27205954 GGATTTTT
1 GGATTTTT
27205962 GGATTTTT
1 GGATTTTT
**
27205970 GGATTTCG
1 GGATTTTT
27205978 GGATTTTT
1 GGATTTTT
27205986 GG
1 GG
27205988 GGCGTTACAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.12, C:0.02, G:0.31, T:0.55
Consensus pattern (8 bp):
GGATTTTT
Found at i:27205966 original size:24 final size:24
Alignment explanation
Indices: 27205938--27205987 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
27205928 AGAAAATTTG
**
27205938 GGATTTCAGGATTTTTGGATTTTT
1 GGATTTCAGGATTTCGGGATTTTT
**
27205962 GGATTTTTGGATTTCGGGATTTTT
1 GGATTTCAGGATTTCGGGATTTTT
27205986 GG
1 GG
27205988 GGCGTTACAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.14, C:0.04, G:0.30, T:0.52
Consensus pattern (24 bp):
GGATTTCAGGATTTCGGGATTTTT
Found at i:27211291 original size:29 final size:29
Alignment explanation
Indices: 27211258--27211334 Score: 109
Period size: 29 Copynumber: 2.7 Consensus size: 29
27211248 AACCATATTC
* * *
27211258 ATATGGCCTATTAGTCCCAAATCACCTAT
1 ATATGGCCCATTAGGCCCAAATCACATAT
*
27211287 ATATGGCCCATTAGGCCCAAATCACATTT
1 ATATGGCCCATTAGGCCCAAATCACATAT
*
27211316 ATATGGCCCGTTAGGCCCA
1 ATATGGCCCATTAGGCCCA
27211335 GTCACATTCA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATAT
Found at i:27212716 original size:16 final size:16
Alignment explanation
Indices: 27212695--27212738 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 16
27212685 GAAAATTTGG
27212695 GATTTCGGGATTTTTA
1 GATTTCGGGATTTTTA
* * *
27212711 GATTTCAGGACTTTTG
1 GATTTCGGGATTTTTA
*
27212727 GATTTCGAGATT
1 GATTTCGGGATT
27212739 CTTGGGGCGT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.20, C:0.09, G:0.25, T:0.45
Consensus pattern (16 bp):
GATTTCGGGATTTTTA
Found at i:27218026 original size:28 final size:29
Alignment explanation
Indices: 27218005--27218097 Score: 129
Period size: 29 Copynumber: 3.3 Consensus size: 29
27217995 GCCCAACCAT
27218005 ATTCATATGGCCCATTAGGCCCAAATCAC
1 ATTCATATGGCCCATTAGGCCCAAATCAC
*
27218034 CTGT-ATATGGCCCATTAGGCCCAAATCAC
1 AT-TCATATGGCCCATTAGGCCCAAATCAC
* *
27218063 ATTTATATGG-CCGTTAGGCCC-AATCAC
1 ATTCATATGGCCCATTAGGCCCAAATCAC
27218090 ATTCATAT
1 ATTCATAT
27218098 TCATGCTCAC
Statistics
Matches: 58, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
27 13 0.22
28 11 0.19
29 33 0.57
30 1 0.02
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (29 bp):
ATTCATATGGCCCATTAGGCCCAAATCAC
Found at i:27218047 original size:57 final size:56
Alignment explanation
Indices: 27217975--27218089 Score: 126
Period size: 57 Copynumber: 2.0 Consensus size: 56
27217965 AAATTCACAT
* *
27217975 ACCTGTATCTCGCCCACTCA-GCCC-AACCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATCGCCCA-TCAGGCCCAAACCACATTCATATGG-CCATTAGGCCC-AATC
* * * * *
27218032 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATGGCCGTTAGGCCCAATC
1 ACCTGTATATCGCCCATCAGGCCCAAACCACATTCATATGGCCATTAGGCCCAATC
27218088 AC
1 AC
27218090 ATTCATATTC
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
56 8 0.16
57 28 0.57
58 13 0.27
ACGTcount: A:0.27, C:0.34, G:0.15, T:0.24
Consensus pattern (56 bp):
ACCTGTATATCGCCCATCAGGCCCAAACCACATTCATATGGCCATTAGGCCCAATC
Found at i:27218343 original size:8 final size:8
Alignment explanation
Indices: 27218308--27218358 Score: 59
Period size: 8 Copynumber: 6.4 Consensus size: 8
27218298 GTAGCCAAAC
*
27218308 TTTCAGCT
1 TTTCGGCT
27218316 TTTCGGCAT
1 TTTCGGC-T
27218325 TTT-GGCT
1 TTTCGGCT
*
27218332 TTTCGCCT
1 TTTCGGCT
*
27218340 TTTCGGCA
1 TTTCGGCT
27218348 TTTCGGCT
1 TTTCGGCT
27218356 TTT
1 TTT
27218359 GCCGATACAT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
7 4 0.11
8 28 0.78
9 4 0.11
ACGTcount: A:0.06, C:0.24, G:0.20, T:0.51
Consensus pattern (8 bp):
TTTCGGCT
Found at i:27219310 original size:12 final size:12
Alignment explanation
Indices: 27219293--27219327 Score: 52
Period size: 14 Copynumber: 2.8 Consensus size: 12
27219283 ATTGGGCTTT
27219293 TGTGTCCAAATA
1 TGTGTCCAAATA
27219305 TGTGTCACCAAATA
1 TGTGT--CCAAATA
27219319 TGTGTCCAA
1 TGTGTCCAA
27219328 GTGGTTCAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 9 0.43
14 12 0.57
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.31
Consensus pattern (12 bp):
TGTGTCCAAATA
Found at i:27219317 original size:14 final size:14
Alignment explanation
Indices: 27219298--27219324 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
27219288 GCTTTTGTGT
27219298 CCAAATATGTGTCA
1 CCAAATATGTGTCA
27219312 CCAAATATGTGTC
1 CCAAATATGTGTC
27219325 CAAGTGGTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (14 bp):
CCAAATATGTGTCA
Found at i:27220849 original size:9 final size:8
Alignment explanation
Indices: 27220816--27220845 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
27220806 GAAAATTCAA
*
27220816 GATTTTGA
1 GATTTTGG
27220824 GATTTTGG
1 GATTTTGG
27220832 GATTTTGG
1 GATTTTGG
27220840 GATTTT
1 GATTTT
27220846 TGGGGCGTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.17, C:0.00, G:0.30, T:0.53
Consensus pattern (8 bp):
GATTTTGG
Found at i:27222436 original size:15 final size:15
Alignment explanation
Indices: 27222413--27222443 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
27222403 TCCAAAATTC
27222413 CAATACAAAACATAT
1 CAATACAAAACATAT
*
27222428 CAATCCAAAACATAT
1 CAATACAAAACATAT
27222443 C
1 C
27222444 TTTCATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:27228280 original size:28 final size:27
Alignment explanation
Indices: 27228256--27228330 Score: 114
Period size: 28 Copynumber: 2.7 Consensus size: 27
27228246 AATATGGAAA
27228256 TTAGTGTGCGAAATATTGAGAATGGCAC
1 TTAGTGTGC-AAATATTGAGAATGGCAC
*
27228284 TTAGGGTGCAAGATATTGAGAATGGCAC
1 TTAGTGTGCAA-ATATTGAGAATGGCAC
27228312 TTAGTGTGCAAAATATTGA
1 TTAGTGTGC-AAATATTGA
27228331 ATGATTCAAC
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.05
28 39 0.91
29 2 0.05
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.29
Consensus pattern (27 bp):
TTAGTGTGCAAATATTGAGAATGGCAC
Found at i:27233192 original size:40 final size:40
Alignment explanation
Indices: 27233128--27233206 Score: 115
Period size: 40 Copynumber: 2.0 Consensus size: 40
27233118 ATATGGTACC
* *
27233128 ACTTGGTGTGTAGGGTTGGATGGGTTGATTCTATCCCCAT
1 ACTTGGTGTGTAGGGTAGGATGGGTCGATTCTATCCCCAT
*
27233168 ACTTGGTGTGTAGGGCTAGG-TGGGTCGATTTTATCCCCA
1 ACTTGGTGTGTAGGG-TAGGATGGGTCGATTCTATCCCCA
27233207 CATGGTGTGT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
40 32 0.91
41 3 0.09
ACGTcount: A:0.15, C:0.16, G:0.33, T:0.35
Consensus pattern (40 bp):
ACTTGGTGTGTAGGGTAGGATGGGTCGATTCTATCCCCAT
Found at i:27235661 original size:57 final size:58
Alignment explanation
Indices: 27235532--27235663 Score: 135
Period size: 58 Copynumber: 2.3 Consensus size: 58
27235522 TGACCTTATT
* * * * *
27235532 ATAGAAAGGATTTAGCCCAGACAGGTAATCCTGATATAAGTCCTCTCGAGCATATTTT
1 ATAGAAAGGATTTAGCCCAGACAGGTAATCCAGATACAAGTCCTCTAGAGCATATGTC
* * * * *
27235590 ATGGATTA-GATTTAGTCCGGACGGGTAATCCAGAT-CAAGCTCCT-TAGAGCATATGTC
1 ATAGA-AAGGATTTAGCCCAGACAGGTAATCCAGATACAAG-TCCTCTAGAGCATATGTC
27235647 ATAGAAAGGATTTAGCC
1 ATAGAAAGGATTTAGCC
27235664 TAGATTGGTA
Statistics
Matches: 58, Mismatches: 13, Indels: 7
0.74 0.17 0.09
Matches are distributed among these distances:
56 1 0.02
57 25 0.43
58 31 0.53
59 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (58 bp):
ATAGAAAGGATTTAGCCCAGACAGGTAATCCAGATACAAGTCCTCTAGAGCATATGTC
Found at i:27236111 original size:48 final size:48
Alignment explanation
Indices: 27236038--27236139 Score: 168
Period size: 48 Copynumber: 2.1 Consensus size: 48
27236028 TTTCGAATGA
* * * *
27236038 TATGAGTAAAGTTCTGACATGAAATAATCTGAACTCGAGATGAACTAT
1 TATGAATAAAGTTCAGACATAAAATAATCTGAACTCGAGATAAACTAT
27236086 TATGAATAAAGTTCAGACATAAAATAATCTGAACTCGAGATAAACTAT
1 TATGAATAAAGTTCAGACATAAAATAATCTGAACTCGAGATAAACTAT
27236134 TATGAA
1 TATGAA
27236140 GTTATACTTG
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.44, C:0.12, G:0.16, T:0.28
Consensus pattern (48 bp):
TATGAATAAAGTTCAGACATAAAATAATCTGAACTCGAGATAAACTAT
Found at i:27242128 original size:23 final size:23
Alignment explanation
Indices: 27242100--27242154 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
27242090 ACCACTCTTT
* *
27242100 CTCTTTCTCCT-TCCATTTTTCTC
1 CTCTTTCTCCTCTCC-TTTATCCC
*
27242123 CTCTTTTTCCTCTCCTTTATCCC
1 CTCTTTCTCCTCTCCTTTATCCC
27242146 CT-TTTCTCC
1 CTCTTTCTCC
27242155 CCTTGTGCGA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
22 6 0.22
23 18 0.67
24 3 0.11
ACGTcount: A:0.04, C:0.42, G:0.00, T:0.55
Consensus pattern (23 bp):
CTCTTTCTCCTCTCCTTTATCCC
Found at i:27243828 original size:14 final size:14
Alignment explanation
Indices: 27243811--27243841 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
27243801 CTGTTATTTA
*
27243811 TTATTTTTATGTTT
1 TTATTTTTATCTTT
27243825 TTATTTTTATCTTT
1 TTATTTTTATCTTT
27243839 TTA
1 TTA
27243842 AAACTACTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.16, C:0.03, G:0.03, T:0.77
Consensus pattern (14 bp):
TTATTTTTATCTTT
Found at i:27246047 original size:21 final size:20
Alignment explanation
Indices: 27246022--27246060 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
27246012 ATAGGAGAGT
*
27246022 AAAAAGAGCGAGAAATGGGCC
1 AAAAAGAGAGA-AAATGGGCC
*
27246043 AAAAATAGAGAAAATGGG
1 AAAAAGAGAGAAAATGGG
27246061 TCAACATGGG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.54, C:0.08, G:0.31, T:0.08
Consensus pattern (20 bp):
AAAAAGAGAGAAAATGGGCC
Found at i:27251617 original size:40 final size:40
Alignment explanation
Indices: 27251435--27251657 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
27251425 TCCTCGTTCA
* * * * *
27251435 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
27251474 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
27251514 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
27251554 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
27251594 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
27251634 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
27251658 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 115 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:27251666 original size:41 final size:41
Alignment explanation
Indices: 27251589--27251666 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
27251579 TTAGTATCTC
* * *
27251589 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
27251630 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
27251667 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:27257268 original size:46 final size:46
Alignment explanation
Indices: 27257218--27257393 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
27257208 TGGTTGAGCA
*
27257218 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
27257264 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
27257309 CATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
27257357 -CCAGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
27257394 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 13, Indels: 20
0.76 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 5 0.05
46 60 0.56
47 28 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:27257374 original size:93 final size:93
Alignment explanation
Indices: 27257215--27257385 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
27257205 GGATGGTTGA
* *
27257215 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
27257280 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
27257308 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCAGAGCTCGTTGAG
1 GCATCCAAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
27257372 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
27257386 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.28
Consensus pattern (93 bp):
GCATCCAAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:27280441 original size:16 final size:16
Alignment explanation
Indices: 27280420--27280453 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
27280410 TAAGGGAGAG
27280420 TTCAATCATGGTACTT
1 TTCAATCATGGTACTT
27280436 TTCAATCATGGTACTT
1 TTCAATCATGGTACTT
27280452 TT
1 TT
27280454 AGTATACTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.24, C:0.18, G:0.12, T:0.47
Consensus pattern (16 bp):
TTCAATCATGGTACTT
Found at i:27281484 original size:21 final size:21
Alignment explanation
Indices: 27281451--27281493 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
27281441 CTATTGTTCA
*
27281451 TTTTTCTCCCTTTTCTTATTG
1 TTTTTCTCCCTTTACTTATTG
** *
27281472 TTTTTCTTTCTTTACTTTTTG
1 TTTTTCTCCCTTTACTTATTG
27281493 T
1 T
27281494 GGTATCATAG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.05, C:0.19, G:0.05, T:0.72
Consensus pattern (21 bp):
TTTTTCTCCCTTTACTTATTG
Found at i:27282048 original size:29 final size:29
Alignment explanation
Indices: 27282006--27282076 Score: 124
Period size: 29 Copynumber: 2.4 Consensus size: 29
27281996 TATTTGGGCC
27282006 TGTGGGCCACACGAACGTATGTCAGGCTA
1 TGTGGGCCACACGAACGTATGTCAGGCTA
* *
27282035 TGTGGTCCACACGAACGTGTGTCAGGCTA
1 TGTGGGCCACACGAACGTATGTCAGGCTA
27282064 TGTGGGCCACACG
1 TGTGGGCCACACG
27282077 GACTTTTGGT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.21, C:0.25, G:0.32, T:0.21
Consensus pattern (29 bp):
TGTGGGCCACACGAACGTATGTCAGGCTA
Found at i:27283473 original size:18 final size:20
Alignment explanation
Indices: 27283425--27283478 Score: 67
Period size: 21 Copynumber: 2.8 Consensus size: 20
27283415 AATTGGGTTA
*
27283425 AAAAATAATTTAATTAGGATT
1 AAAATTAATTTAATTAGGA-T
27283446 AAAATTAATTTAATTA-GA-
1 AAAATTAATTTAATTAGGAT
*
27283464 AAATTTAATTTAATT
1 AAAATTAATTTAATT
27283479 TAATATAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
18 14 0.45
20 2 0.06
21 15 0.48
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.43
Consensus pattern (20 bp):
AAAATTAATTTAATTAGGAT
Found at i:27284011 original size:26 final size:26
Alignment explanation
Indices: 27283975--27284024 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
27283965 TCCAAACATT
27283975 TTTTTGGTTGTATATCGTGGTTATTG
1 TTTTTGGTTGTATATCGTGGTTATTG
*
27284001 TTTTTGGTTGTATATTGTGGTTAT
1 TTTTTGGTTGTATATCGTGGTTAT
27284025 CCTTGGTTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.12, C:0.02, G:0.26, T:0.60
Consensus pattern (26 bp):
TTTTTGGTTGTATATCGTGGTTATTG
Found at i:27286131 original size:16 final size:16
Alignment explanation
Indices: 27286112--27286188 Score: 61
Period size: 16 Copynumber: 4.8 Consensus size: 16
27286102 TCGTGTCCAT
27286112 AAAAATTCAAACTTAA
1 AAAAATTCAAACTTAA
* **
27286128 AAAAGTTTC-AACCCAA
1 AAAA-ATTCAAACTTAA
*
27286144 AAAAATTCAAAGTTGAA
1 AAAAATTCAAACTT-AA
27286161 AAAAATAT-AAA-TCTAA
1 AAAAAT-TCAAACT-TAA
27286177 AAAAATTCAAAC
1 AAAAATTCAAAC
27286189 ACGAGAACGT
Statistics
Matches: 47, Mismatches: 7, Indels: 13
0.70 0.10 0.19
Matches are distributed among these distances:
15 4 0.09
16 27 0.57
17 15 0.32
18 1 0.02
ACGTcount: A:0.61, C:0.13, G:0.04, T:0.22
Consensus pattern (16 bp):
AAAAATTCAAACTTAA
Found at i:27287601 original size:9 final size:10
Alignment explanation
Indices: 27287580--27287613 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
27287570 GACTGAACCA
27287580 AAAAATTATT
1 AAAAATTATT
*
27287590 AAAAATTATA
1 AAAAATTATT
*
27287600 AAAAAATATT
1 AAAAATTATT
27287610 AAAA
1 AAAA
27287614 TTTGAAAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (10 bp):
AAAAATTATT
Found at i:27287604 original size:20 final size:20
Alignment explanation
Indices: 27287579--27287646 Score: 64
Period size: 20 Copynumber: 3.2 Consensus size: 20
27287569 TGACTGAACC
27287579 AAAAAATTATTAAAAATTAT
1 AAAAAATTATTAAAAATTAT
* * *
27287599 AAAAAAATATTAAAATTTGAAA
1 AAAAAATTATTAAAAATT--AT
*
27287621 AAAAAATATATTTAAAATATAT
1 AAAAAAT-TATTAAAAAT-TAT
27287643 AAAA
1 AAAA
27287647 GTTTTAAAAT
Statistics
Matches: 37, Mismatches: 7, Indels: 6
0.74 0.14 0.12
Matches are distributed among these distances:
20 16 0.43
22 12 0.32
23 8 0.22
24 1 0.03
ACGTcount: A:0.68, C:0.00, G:0.01, T:0.31
Consensus pattern (20 bp):
AAAAAATTATTAAAAATTAT
Found at i:27301095 original size:19 final size:19
Alignment explanation
Indices: 27301071--27301107 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
27301061 TTTCTGAACT
27301071 TTACTAAGTA-TCTGTTATA
1 TTACTAAG-ACTCTGTTATA
27301090 TTACTAAGACTCTGTTAT
1 TTACTAAGACTCTGTTAT
27301108 GACATTGTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 1 0.06
19 16 0.94
ACGTcount: A:0.30, C:0.14, G:0.11, T:0.46
Consensus pattern (19 bp):
TTACTAAGACTCTGTTATA
Found at i:27311966 original size:46 final size:46
Alignment explanation
Indices: 27311916--27312082 Score: 151
Period size: 46 Copynumber: 3.6 Consensus size: 46
27311906 TGTTTGGGCA
* * *
27311916 TCCGAACTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACG
* * * ** *
27311962 TCCGAACTCATTGAGTTGAGTCCGAGTTC-GTGA--GATATAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAA--A--CG
* * *
27312009 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTCGTGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACG
* *
27312055 CCCGAGCTCGTTGAGTTGAGTCCGAGTT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTT
27312083 TGTTTATGGG
Statistics
Matches: 94, Mismatches: 20, Indels: 14
0.73 0.16 0.11
Matches are distributed among these distances:
43 5 0.05
45 3 0.03
46 53 0.56
47 27 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACG
Found at i:27312071 original size:93 final size:93
Alignment explanation
Indices: 27311912--27312082 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
27311902 AGGATGTTTG
* * * *
27311912 GGCATCCGAACTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCATTGAG
1 GGCATCCGAACTCGTTGAATTGAGTCCAAGTTCACTCATGGATGCAAACGCCCGAACTCATTGAG
27311977 TTGAGTCCGAGTTCGTGAGATATAACTA
66 TTGAGTCCGAGTTCGTGAGATATAACTA
* * * * *
27312005 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTCGTGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAATTGAGTCCAAGTTCACTCATGGATGCAAACGCCCGAACTCATTGAG
27312070 TTGAGTCCGAGTT
66 TTGAGTCCGAGTT
27312083 TGTTTATGGG
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAATTGAGTCCAAGTTCACTCATGGATGCAAACGCCCGAACTCATTGAG
TTGAGTCCGAGTTCGTGAGATATAACTA
Found at i:27328074 original size:46 final size:46
Alignment explanation
Indices: 27328021--27328189 Score: 175
Period size: 46 Copynumber: 3.7 Consensus size: 46
27328011 TGAGCATCCA
*
27328021 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCG
* * * *
27328067 AACTCGTTGAGTTGAGTCCGAGTTC-GTGAT--ATGTAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CGTCCG
* * *
27328114 AACTCATTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG-CTCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTC-CG
* *
27328160 AGCTCGTTGAGTTGATTCCGAGTTCACTTA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTA
27328190 GGGGCGGGTT
Statistics
Matches: 100, Mismatches: 15, Indels: 16
0.76 0.11 0.12
Matches are distributed among these distances:
43 5 0.05
45 5 0.05
46 54 0.54
47 28 0.28
48 4 0.04
50 4 0.04
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCG
Found at i:27328173 original size:93 final size:93
Alignment explanation
Indices: 27328014--27328184 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
27328004 GGATAGTTGA
* *
27328014 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
27328079 TGAGTCCGAGTTCGTGATATGTAACTAG
66 TGAGTCCGAGTTCGTGATATGTAACTAG
* * * *
27328107 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG-CTCGAGCTCGTTGAG
1 GCATCCAAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTC-CGAACTCGTTGAG
*
27328171 TTGATTCCGAGTTC
65 TTGAGTCCGAGTTC
27328185 ACTTAGGGGC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 1 0.01
93 69 0.99
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.30
Consensus pattern (93 bp):
GCATCCAAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGATATGTAACTAG
Found at i:27348673 original size:2 final size:2
Alignment explanation
Indices: 27348666--27348693 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
27348656 TTTAATTTAA
27348666 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
27348694 GTTATCTATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:27349109 original size:8 final size:8
Alignment explanation
Indices: 27349096--27349121 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
27349086 AATAAATTTT
27349096 ATTTTAAA
1 ATTTTAAA
27349104 ATTTTAAA
1 ATTTTAAA
27349112 ATTTTAAA
1 ATTTTAAA
27349120 AT
1 AT
27349122 ATCATTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (8 bp):
ATTTTAAA
Found at i:27359174 original size:29 final size:28
Alignment explanation
Indices: 27359138--27359215 Score: 95
Period size: 29 Copynumber: 2.7 Consensus size: 28
27359128 TCATGAGATT
27359138 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
* *
27359168 -GCACTAAGTGTGTGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
27359195 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
27359216 GATTATTAAG
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
27 5 0.12
29 33 0.80
30 3 0.07
ACGTcount: A:0.26, C:0.13, G:0.31, T:0.31
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:27359433 original size:174 final size:174
Alignment explanation
Indices: 27359168--27359495 Score: 602
Period size: 174 Copynumber: 1.9 Consensus size: 174
27359158 AAATTGTACA
*
27359168 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
27359233 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
*
27359298 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTCTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
27359342 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
27359407 TGTGCGAACTCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
27359472 TTCTGGACAGCGGAAAAGGTAAGT
131 TTCTGGACAGCGGAAAAGGTAAGT
27359496 ACCTTGAGTT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 148 1.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
TTCTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:27374227 original size:20 final size:20
Alignment explanation
Indices: 27374202--27374240 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
27374192 CCTAGAATTG
*
27374202 ATGAAATTGAATAAATTGAA
1 ATGAAATGGAATAAATTGAA
*
27374222 ATGAAATGGATTAAATTGA
1 ATGAAATGGAATAAATTGA
27374241 TGTTAAATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.51, C:0.00, G:0.18, T:0.31
Consensus pattern (20 bp):
ATGAAATGGAATAAATTGAA
Found at i:27375883 original size:35 final size:36
Alignment explanation
Indices: 27375843--27375915 Score: 114
Period size: 35 Copynumber: 2.1 Consensus size: 36
27375833 AGAATGATCA
*
27375843 AAATTGTCATACGAGTA-AGACA-GGGTATGTGTCTC
1 AAATTGTCATACGAGTAGAAACACGGGTATGT-TCTC
27375878 AAATTGTCATACGAGTAGAAACACGGGTATGTTCTC
1 AAATTGTCATACGAGTAGAAACACGGGTATGTTCTC
27375914 AA
1 AA
27375916 CCGTGTGAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
35 17 0.49
36 10 0.29
37 8 0.23
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.27
Consensus pattern (36 bp):
AAATTGTCATACGAGTAGAAACACGGGTATGTTCTC
Found at i:27380574 original size:50 final size:49
Alignment explanation
Indices: 27380456--27380585 Score: 190
Period size: 50 Copynumber: 2.6 Consensus size: 49
27380446 CTAGTACGCA
* * **
27380456 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
*
27380505 TAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCA-TCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAACAGTCTAATACACG
27380555 TAGTAGCCTGCACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
27380586 TCACAGTTTT
Statistics
Matches: 74, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
49 29 0.39
50 41 0.55
51 4 0.05
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
Found at i:27380639 original size:101 final size:99
Alignment explanation
Indices: 27380456--27380642 Score: 252
Period size: 101 Copynumber: 1.9 Consensus size: 99
27380446 CTAGTACGCA
* * *
27380456 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTGCACTTA
*
27380521 GTACTACACACGTGACCTCACCATCTAATACACG
66 GTACTACACACGCGACCTCACCATCTAATACACG
* * *
27380555 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACGCATAGTA-CCTTGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG---TCGGGTACACATAGTAGCC-TGCA
*
27380618 CTTAGTACTACACATGCGACCTCAC
62 CTTAGTACTACACACGCGACCTCAC
27380643 AATAGATCAT
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
98 4 0.05
99 30 0.39
100 2 0.03
101 40 0.53
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTCACCATCTAATACACG
Found at i:27381848 original size:19 final size:19
Alignment explanation
Indices: 27381821--27381884 Score: 76
Period size: 19 Copynumber: 3.4 Consensus size: 19
27381811 TATATATACT
27381821 AAAAA-AATATAAAAATAA
1 AAAAATAATATAAAAATAA
* * *
27381839 CAATATAATATAAACATAA
1 AAAAATAATATAAAAATAA
*
27381858 AAAAATATATAAAAAAATAA
1 AAAAATA-ATATAAAAATAA
27381878 AAAAATA
1 AAAAATA
27381885 TATTTTTTTA
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
18 3 0.08
19 17 0.46
20 17 0.46
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.20
Consensus pattern (19 bp):
AAAAATAATATAAAAATAA
Found at i:27381879 original size:20 final size:20
Alignment explanation
Indices: 27381831--27381887 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
27381821 AAAAAAATAT
* * *
27381831 AAAAATAACAATATA-ATAT
1 AAAAATAAAAAAATATATAA
*
27381850 AAACATAAAAAAATATATAA
1 AAAAATAAAAAAATATATAA
27381870 AAAAATAAAAAAATATAT
1 AAAAATAAAAAAATATAT
27381888 TTTTTTACGT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
19 12 0.38
20 20 0.62
ACGTcount: A:0.74, C:0.04, G:0.00, T:0.23
Consensus pattern (20 bp):
AAAAATAAAAAAATATATAA
Found at i:27382485 original size:3 final size:3
Alignment explanation
Indices: 27382461--27382528 Score: 57
Period size: 3 Copynumber: 22.3 Consensus size: 3
27382451 AATATCCTTG
* * * *
27382461 TTA TTT TTA -TA TTA TTA GTA TTA TTA GTA TTA GTA TTA TTA TTA TGTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
* *
27382509 TTA GTA TATA TTT TTA TTA T
1 TTA TTA T-TA TTA TTA TTA T
27382529 GTACGTGTAT
Statistics
Matches: 50, Mismatches: 12, Indels: 6
0.74 0.18 0.09
Matches are distributed among these distances:
2 2 0.04
3 42 0.84
4 6 0.12
ACGTcount: A:0.31, C:0.00, G:0.07, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:27382538 original size:23 final size:23
Alignment explanation
Indices: 27382468--27382539 Score: 67
Period size: 23 Copynumber: 3.1 Consensus size: 23
27382458 TTGTTATTTT
* *
27382468 TATATTATTAGTAT-TATTAGTA
1 TATATTATTATTATGTAGTAGTA
*
27382490 TTAGTATTATTATTATGTATTAGTA
1 -TA-TATTATTATTATGTAGTAGTA
*
27382515 TATATTTTTATTATGTACGT-GTA
1 TATATTATTATTATGTA-GTAGTA
27382538 TA
1 TA
27382540 CATATATATA
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
23 21 0.49
24 14 0.33
25 8 0.19
ACGTcount: A:0.32, C:0.01, G:0.11, T:0.56
Consensus pattern (23 bp):
TATATTATTATTATGTAGTAGTA
Found at i:27382647 original size:3 final size:3
Alignment explanation
Indices: 27382641--27382674 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
27382631 TGTTATCATC
*
27382641 ATT ATT ATT ATT ATT ATT ATT ATT ATT TTT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
27382675 GTTTATGCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
ATT
Found at i:27382952 original size:64 final size:64
Alignment explanation
Indices: 27382878--27383009 Score: 173
Period size: 64 Copynumber: 2.1 Consensus size: 64
27382868 GTCGTATTAT
27382878 TATATTTTAATATTA-TA-TTATA-TATACA-TATATACATATATCTTTTATATATATTATCATT
1 TATATTTTAATATTATTAGTTATATTATACACTAT-TACATATAT-TTTTATA-ATATTAT-ATT
27382939 GTA
62 GTA
* * *
27382942 TATATTTTAATATTATTAGTTATATTTTACACTATTATATATATTTTTCTAATATTATATTGTA
1 TATATTTTAATATTATTAGTTATATTATACACTATTACATATATTTTTATAATATTATATTGTA
27383006 TATA
1 TATA
27383010 CTGTTGTTTA
Statistics
Matches: 61, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
64 25 0.41
65 9 0.15
66 11 0.18
67 13 0.21
68 3 0.05
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.55
Consensus pattern (64 bp):
TATATTTTAATATTATTAGTTATATTATACACTATTACATATATTTTTATAATATTATATTGTA
Found at i:27382984 original size:19 final size:18
Alignment explanation
Indices: 27382940--27382999 Score: 57
Period size: 20 Copynumber: 3.0 Consensus size: 18
27382930 ATTATCATTG
27382940 TATATATTTTAATATTAT
1 TATATATTTTAATATTAT
27382958 TAGTTATATTTTACACTATTAT
1 TA--TATATTTTA-A-TATTAT
*
27382980 ATATATTTTTCTAATATTAT
1 -TATATATTT-TAATATTAT
27383000 ATTGTATATA
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
18 2 0.06
20 15 0.43
21 8 0.23
22 8 0.23
23 2 0.06
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.58
Consensus pattern (18 bp):
TATATATTTTAATATTAT
Found at i:27383442 original size:38 final size:37
Alignment explanation
Indices: 27383358--27383452 Score: 97
Period size: 38 Copynumber: 2.5 Consensus size: 37
27383348 TATACGTACT
*
27383358 TATACATACTTAAATATATTTTTCATATTTCATAATTC
1 TATACATACTTAAATATATTTTGCATATTT-ATAATTC
* *
27383396 T-TATATACTTACATATATTTATGCATATTT-TACA-TC
1 TATACATACTTAAATATATTT-TGCATATTTATA-ATTC
*
27383432 ATATACATACTTATATATATT
1 -TATACATACTTAAATATATT
27383453 CTTTATATTC
Statistics
Matches: 48, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
36 4 0.08
37 19 0.40
38 25 0.52
ACGTcount: A:0.37, C:0.13, G:0.01, T:0.49
Consensus pattern (37 bp):
TATACATACTTAAATATATTTTGCATATTTATAATTC
Found at i:27389467 original size:40 final size:40
Alignment explanation
Indices: 27389420--27389603 Score: 253
Period size: 40 Copynumber: 4.6 Consensus size: 40
27389410 CTCGCACAAG
*
27389420 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAAT
* * * *
27389460 GCCTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAAT
* *
27389500 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCAGAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCATAAAT
* * *
27389540 GCCTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAAT
*
27389580 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
27389604 CATTCGAATA
Statistics
Matches: 124, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 122 0.98
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAAT
Found at i:27389515 original size:80 final size:79
Alignment explanation
Indices: 27389384--27389603 Score: 275
Period size: 80 Copynumber: 2.8 Consensus size: 79
27389374 ACCCAAGTAT
* * * * *
27389384 CTTCGGGATTTAGCCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAGCCCGGATATGGTC
1 CTTCGGGACTTAGCCGGATATAATCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAG-C
*
27389448 -ACTAGCATAAATGC
65 AACTAGCAGAAATGC
* *
27389462 CTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGC
1 CTTCGGGACTTAG-CCGGATATAATCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGC
*
27389527 AACTCGCAGAAATGC
65 AACTAGCAGAAATGC
* * *
27389542 CTTC-GGATCTTAGTCCGGATATAGTCACTAGCATAAAAGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGA-CTTAG-CCGGATATAATCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATAT
27389604 CATTCGAATA
Statistics
Matches: 124, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
78 12 0.10
79 21 0.17
80 91 0.73
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (79 bp):
CTTCGGGACTTAGCCGGATATAATCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGCA
ACTAGCAGAAATGC
Found at i:27392065 original size:35 final size:35
Alignment explanation
Indices: 27392016--27392120 Score: 192
Period size: 35 Copynumber: 3.0 Consensus size: 35
27392006 GCTCGAGAGA
*
27392016 ATGCTTCCTGATTATGTGCCCTAATTAGGTACCCT
1 ATGCTTCCTGATTATGTGCCCTAATTGGGTACCCT
*
27392051 ATGCTTCCTAATTATGTGCCCTAATTGGGTACCCT
1 ATGCTTCCTGATTATGTGCCCTAATTGGGTACCCT
27392086 ATGCTTCCTGATTATGTGCCCTAATTGGGTACCCT
1 ATGCTTCCTGATTATGTGCCCTAATTGGGTACCCT
27392121 TGAATATGAG
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
35 67 1.00
ACGTcount: A:0.19, C:0.26, G:0.18, T:0.37
Consensus pattern (35 bp):
ATGCTTCCTGATTATGTGCCCTAATTGGGTACCCT
Found at i:27394271 original size:27 final size:27
Alignment explanation
Indices: 27394232--27394382 Score: 160
Period size: 27 Copynumber: 5.6 Consensus size: 27
27394222 TATTTGAGCC
* *
27394232 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
27394259 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
27394286 CGCACACTTAGTGCTACATAGTCAACCT
1 CGCACACTTAGTGCTACATAATCAA-CT
** ** *
27394314 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
27394341 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
27394368 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
27394383 GTACAATTTA
Statistics
Matches: 106, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
27 83 0.78
28 23 0.22
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:27394344 original size:55 final size:54
Alignment explanation
Indices: 27394232--27394381 Score: 167
Period size: 55 Copynumber: 2.8 Consensus size: 54
27394222 TATTTGAGCC
* * * *
27394232 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAATCAAAT
* * ** *
27394286 CGCACACTTAGTGCTACATAGTCAACCTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAA-CTCGCACACTTAGTGCCACATAATCAAAT
* **
27394341 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGC
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGC
27394382 TGTACAATTT
Statistics
Matches: 82, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
54 38 0.46
55 44 0.54
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAATCAAAT
Found at i:27402357 original size:27 final size:27
Alignment explanation
Indices: 27402318--27402495 Score: 189
Period size: 27 Copynumber: 6.6 Consensus size: 27
27402308 ATTTTGAGCC
* * *
27402318 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* * *
27402345 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
27402372 CGCACACTTAGTGCTACATAGTCAACCT
1 CGCACACTTAGTGCTACATAGTCAA-CT
** * *
27402400 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
27402427 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
*
27402454 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAGTC-AACT
27402481 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
27402496 GTACAATTTA
Statistics
Matches: 129, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 104 0.81
28 25 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:27402457 original size:82 final size:81
Alignment explanation
Indices: 27402339--27402494 Score: 217
Period size: 82 Copynumber: 1.9 Consensus size: 81
27402329 TGCTATATAA
* *
27402339 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTC-AACCTCGC
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCGAA--TCGC
27402403 ACACTTAGTGCCGCATGG
64 ACACTTAGTGCCGCATGG
* * **
27402421 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCA
27402485 CACTTAGTGC
65 CACTTAGTGC
27402495 TGTACAATTT
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
81 16 0.24
82 48 0.73
83 2 0.03
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:27406913 original size:58 final size:57
Alignment explanation
Indices: 27406807--27406915 Score: 132
Period size: 58 Copynumber: 1.9 Consensus size: 57
27406797 CAAGCATATA
* **
27406807 GCCCACTAGGCCCAATCTTATTCAAATGGCCCATCTGGCCCAGTTCATATTCTTATG
1 GCCCACTAGGCCCAATCTCATTCAAATGGCCCATCTGGCCCAAATCATATTCTTATG
* *
27406864 GCCCACTAGGCCCAAT-TCACCTTTATATGGCCCAT-TAGGCCCAAATCATATT
1 GCCCACTAGGCCCAATCTCA--TTCAAATGGCCCATCT-GGCCCAAATCATATT
27406916 ATACTCATGC
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
56 2 0.05
57 17 0.39
58 25 0.57
ACGTcount: A:0.25, C:0.32, G:0.15, T:0.28
Consensus pattern (57 bp):
GCCCACTAGGCCCAATCTCATTCAAATGGCCCATCTGGCCCAAATCATATTCTTATG
Found at i:27410043 original size:43 final size:43
Alignment explanation
Indices: 27409942--27410066 Score: 148
Period size: 43 Copynumber: 3.0 Consensus size: 43
27409932 TCTGGCACGT
* *
27409942 TGGCATCG--ATTTGATTTACGTGTAAGACCATGTCTGGGACAC
1 TGGCATCGATATTTGATTT-CATGTAAGACCATATCTGGGACAC
* * *
27409984 TGGCATC-ATATATGATTTCATGTAAGACCCTATCTGGGACAG
1 TGGCATCGATATTTGATTTCATGTAAGACCATATCTGGGACAC
* * *
27410026 TGGCATCGATATTTGATTACATGTAAGACCACATCTAGGAC
1 TGGCATCGATATTTGATTTCATGTAAGACCATATCTGGGAC
27410067 GTAGGCATTT
Statistics
Matches: 70, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
42 34 0.49
43 36 0.51
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.30
Consensus pattern (43 bp):
TGGCATCGATATTTGATTTCATGTAAGACCATATCTGGGACAC
Found at i:27410074 original size:43 final size:43
Alignment explanation
Indices: 27409920--27410074 Score: 151
Period size: 42 Copynumber: 3.7 Consensus size: 43
27409910 TGTGTTATCG
* * *
27409920 TGTAAGACCACGTCTGGCAC-GTTGGCATCG--ATTTGATTTACG
1 TGTAAGACCACATCTGGGACAG-TGGCATCGATATTTGA-TTACA
** * * *
27409962 TGTAAGACCATGTCTGGGACACTGGCATC-ATATATGATTTCA
1 TGTAAGACCACATCTGGGACAGTGGCATCGATATTTGATTACA
27410004 TGTAAGACC-CTATCTGGGACAGTGGCATCGATATTTGATTACA
1 TGTAAGACCAC-ATCTGGGACAGTGGCATCGATATTTGATTACA
*
27410047 TGTAAGACCACATCTAGGAC-GTAGGCAT
1 TGTAAGACCACATCTGGGACAGT-GGCAT
27410075 TTTACGAGCT
Statistics
Matches: 94, Mismatches: 12, Indels: 13
0.79 0.10 0.11
Matches are distributed among these distances:
42 55 0.59
43 38 0.40
44 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (43 bp):
TGTAAGACCACATCTGGGACAGTGGCATCGATATTTGATTACA
Found at i:27412640 original size:40 final size:40
Alignment explanation
Indices: 27412562--27412703 Score: 225
Period size: 40 Copynumber: 3.6 Consensus size: 40
27412552 AACCCAAGTA
* *
27412562 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
27412601 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
27412641 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
27412681 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
27412704 CATTTGAATA
Statistics
Matches: 95, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
39 12 0.13
40 82 0.86
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:27416255 original size:40 final size:40
Alignment explanation
Indices: 27416200--27416341 Score: 187
Period size: 40 Copynumber: 3.6 Consensus size: 40
27416190 TATTCGGATG
* *
27416200 ATATCCGGGCTAAGTCTCGAAGGCATTTGTGCAAGTTTCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
27416240 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
27416280 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
27416320 ATAT-CTGGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
27416342 TACTTGGGTT
Statistics
Matches: 89, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 15 0.17
40 74 0.83
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:27423109 original size:43 final size:42
Alignment explanation
Indices: 27422953--27423110 Score: 162
Period size: 42 Copynumber: 3.7 Consensus size: 42
27422943 ATATATGTTA
*
27422953 TCATGTAAGACCACGTCTGGCACGTTGGCATCG-ATTTGATT
1 TCATGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATT
* * *
27422994 T-ATGTGTAAGACCATGTCTGGGACATTGGCATCGTATATGATT
1 TCA--TGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATT
* * * *
27423037 TCGTATAAGACC-CTGTCTAGGATAG-TGGCATCGATATTTGATT
1 TCATGTAAGACCAC-GTCTGGGA-CGTTGGCATCG-TATTTGATT
*
27423080 TCATGTAAGACCACGTTTGGGACGTTGGCAT
1 TCATGTAAGACCACGTCTGGGACGTTGGCAT
27423111 TTTACGAGCT
Statistics
Matches: 92, Mismatches: 16, Indels: 16
0.74 0.13 0.13
Matches are distributed among these distances:
40 1 0.01
41 1 0.01
42 51 0.55
43 38 0.41
44 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (42 bp):
TCATGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATT
Found at i:27426803 original size:42 final size:42
Alignment explanation
Indices: 27426649--27426804 Score: 154
Period size: 42 Copynumber: 3.7 Consensus size: 42
27426639 TGTGTTTTTG
* * * *
27426649 TGTAAGACCACATCTAGGACGTTGGCAT-TAACTTATGATTTACG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGAA-TT-TGA-TTACA
* * ** * *
27426693 TGTAAGACCATGTCTGGGACATCAGCATCGTATTTGATTTCA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGAATTTGATTACA
**
27426735 TGTAAGACCTTGTCTGGGACAG-TGGCATCGAATTTGATTACA
1 TGTAAGACCACGTCTGGGAC-GTTGGCATCGAATTTGATTACA
27426777 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
27426805 TGTACGATTC
Statistics
Matches: 91, Mismatches: 18, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
41 1 0.01
42 62 0.68
43 3 0.03
44 24 0.26
45 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGAATTTGATTACA
Found at i:27437514 original size:43 final size:42
Alignment explanation
Indices: 27437393--27437550 Score: 203
Period size: 43 Copynumber: 3.7 Consensus size: 42
27437383 ATGTGTTTTT
*
27437393 GTGTAAGACCACGTCTGGGACGTTGGCATCA-ACTTATGATTTAC
1 GTGTAAGACCATGTCTGGGACGTTGGCATCATA-TT-TGATTT-C
* *
27437437 GTGTAAGACCATGTCTGGGACATCGGCATCATATTTGATTTC
1 GTGTAAGACCATGTCTGGGACGTTGGCATCATATTTGATTTC
* *
27437479 GTGTAAGACCCTGTCTGGGACAG-TGGCATCGATATTTGATTAC
1 GTGTAAGACCATGTCTGGGAC-GTTGGCATC-ATATTTGATTTC
*
27437522 ATGTAAGACCATGTCTGGGACGTTGGCAT
1 GTGTAAGACCATGTCTGGGACGTTGGCAT
27437551 TGTATGATTC
Statistics
Matches: 101, Mismatches: 9, Indels: 9
0.85 0.08 0.08
Matches are distributed among these distances:
42 28 0.28
43 42 0.42
44 30 0.30
45 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCATGTCTGGGACGTTGGCATCATATTTGATTTC
Found at i:27437984 original size:26 final size:26
Alignment explanation
Indices: 27437952--27438002 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
27437942 TAGAAGTATA
27437952 TGAATATGTTTTGTAAAGTGTATATG
1 TGAATATGTTTTGTAAAGTGTATATG
27437978 TGAATATGTTTTGTAAAGTGTATAT
1 TGAATATGTTTTGTAAAGTGTATAT
27438003 CATGCCATGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (26 bp):
TGAATATGTTTTGTAAAGTGTATATG
Found at i:27440189 original size:21 final size:21
Alignment explanation
Indices: 27440159--27440267 Score: 182
Period size: 21 Copynumber: 5.2 Consensus size: 21
27440149 CATCGTTAAT
*
27440159 AGAAGCTCATAAGAGCTAAAC
1 AGAAGCTCATAAGAGCTGAAC
*
27440180 AGAAGGTCATAAGAGCTGAAC
1 AGAAGCTCATAAGAGCTGAAC
27440201 AGAAGCTCATAAGAGCTGAAC
1 AGAAGCTCATAAGAGCTGAAC
* *
27440222 AGAAACTCATAAGAGCTTAAC
1 AGAAGCTCATAAGAGCTGAAC
27440243 AGAAGCTCATAAGAGCTGAAC
1 AGAAGCTCATAAGAGCTGAAC
27440264 AGAA
1 AGAA
27440268 AGTAAAGCGC
Statistics
Matches: 81, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 81 1.00
ACGTcount: A:0.46, C:0.17, G:0.22, T:0.15
Consensus pattern (21 bp):
AGAAGCTCATAAGAGCTGAAC
Found at i:27444548 original size:7 final size:7
Alignment explanation
Indices: 27444536--27444561 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
27444526 CTCTTCTCTT
27444536 CTTTTAA
1 CTTTTAA
27444543 CTTTTAA
1 CTTTTAA
27444550 CTTTTAA
1 CTTTTAA
27444557 CTTTT
1 CTTTT
27444562 TGTTCCCAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.23, C:0.15, G:0.00, T:0.62
Consensus pattern (7 bp):
CTTTTAA
Found at i:27449135 original size:18 final size:19
Alignment explanation
Indices: 27449112--27449160 Score: 64
Period size: 18 Copynumber: 2.5 Consensus size: 19
27449102 AAGTTTTATG
*
27449112 ATTTTTAGTATAT-TTTTA
1 ATTTTTAATATATATTTTA
27449130 ATTTTTAATATATATTTTATA
1 ATTTTTAATATATA-TTT-TA
27449151 ATTTTTAATA
1 ATTTTTAATA
27449161 ATAATCGACG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 12 0.44
20 3 0.11
21 12 0.44
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (19 bp):
ATTTTTAATATATATTTTA
Found at i:27449154 original size:21 final size:20
Alignment explanation
Indices: 27449120--27449160 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 20
27449110 TGATTTTTAG
27449120 TATATTTTTAATTTTTAATA
1 TATATTTTTAATTTTTAATA
27449140 TATATTTTATAATTTTTAATA
1 TATATTTT-TAATTTTTAATA
27449161 ATAATCGACG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (20 bp):
TATATTTTTAATTTTTAATA
Found at i:27458418 original size:28 final size:28
Alignment explanation
Indices: 27458378--27458433 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
27458368 GGCTATGTCC
*
27458378 TAGCCTGTGTCTGACCCCGTGTAACTCT
1 TAGCCCGTGTCTGACCCCGTGTAACTCT
27458406 TAGCCCGTGTCTGACCCCGTGTAACTCT
1 TAGCCCGTGTCTGACCCCGTGTAACTCT
27458434 CTAACTTGGG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.14, C:0.34, G:0.21, T:0.30
Consensus pattern (28 bp):
TAGCCCGTGTCTGACCCCGTGTAACTCT
Found at i:27460952 original size:40 final size:40
Alignment explanation
Indices: 27460905--27461108 Score: 313
Period size: 40 Copynumber: 5.1 Consensus size: 40
27460895 CGGGCTTTAA
** *
27460905 CCGGATATAGCCACTCGCTCAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
**
27460945 CCGGATATAGTAGTTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
27460985 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
27461025 CCGGA-ATTAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
27461065 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
27461105 CCGG
1 CCGG
27461109 TTATCATCCG
Statistics
Matches: 154, Mismatches: 9, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
39 1 0.01
40 153 0.99
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:27468978 original size:40 final size:40
Alignment explanation
Indices: 27468931--27469134 Score: 304
Period size: 40 Copynumber: 5.1 Consensus size: 40
27468921 CGGGCTTTAA
** *
27468931 CCGGATATAGCCACTCGCTCAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
**
27468971 CCGGATATAGTAGTTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
27469011 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
27469051 CCGGA-ATTAGTAACCCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
27469091 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
27469131 CCGG
1 CCGG
27469135 TTATCATCCG
Statistics
Matches: 152, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 1 0.01
40 151 0.99
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:27473444 original size:20 final size:19
Alignment explanation
Indices: 27473410--27473455 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
27473400 GACATTGTTG
27473410 AGTTTG-TGAAGTTTTTGA
1 AGTTTGATGAAGTTTTTGA
*
27473428 AGTTTGATGATAGTTTTTTA
1 AGTTTGATGA-AGTTTTTGA
*
27473448 AGCTTGAT
1 AGTTTGAT
27473456 AGCTAAATAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 6 0.25
19 3 0.12
20 15 0.62
ACGTcount: A:0.24, C:0.02, G:0.24, T:0.50
Consensus pattern (19 bp):
AGTTTGATGAAGTTTTTGA
Found at i:27476955 original size:17 final size:17
Alignment explanation
Indices: 27476933--27476966 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
27476923 ATTTAAATTA
27476933 TTTAGATTCATGAATGG
1 TTTAGATTCATGAATGG
27476950 TTTAGATTCATGAATGG
1 TTTAGATTCATGAATGG
27476967 AAATTGCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.06, G:0.24, T:0.41
Consensus pattern (17 bp):
TTTAGATTCATGAATGG
Found at i:27477097 original size:19 final size:19
Alignment explanation
Indices: 27477049--27477089 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
27477039 TAAGAGTTCC
*
27477049 AAAAAAATTAGAAAATATAT
1 AAAAAATTTA-AAAATATAT
27477069 AAAAAATTTAAAAATAT-T
1 AAAAAATTTAAAAATATAT
27477087 AAA
1 AAA
27477090 TATATTTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 4 0.20
19 7 0.35
20 9 0.45
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (19 bp):
AAAAAATTTAAAAATATAT
Found at i:27477876 original size:18 final size:15
Alignment explanation
Indices: 27477838--27477867 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
27477828 TCAATAGGAT
27477838 TAAACTGGTTATCGA
1 TAAACTGGTTATCGA
27477853 TAAACTGGTTATCGA
1 TAAACTGGTTATCGA
27477868 AAGTAAACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.33
Consensus pattern (15 bp):
TAAACTGGTTATCGA
Found at i:27479862 original size:35 final size:35
Alignment explanation
Indices: 27479822--27479896 Score: 141
Period size: 35 Copynumber: 2.1 Consensus size: 35
27479812 GTTAATCAAG
*
27479822 TAAGTGGCTATGTCACACCTGGGTTTGTTAAGTCT
1 TAAGTGGCTATGTCACACCTGGGTTTATTAAGTCT
27479857 TAAGTGGCTATGTCACACCTGGGTTTATTAAGTCT
1 TAAGTGGCTATGTCACACCTGGGTTTATTAAGTCT
27479892 TAAGT
1 TAAGT
27479897 TGCAAGGGGG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.23, C:0.16, G:0.24, T:0.37
Consensus pattern (35 bp):
TAAGTGGCTATGTCACACCTGGGTTTATTAAGTCT
Found at i:27481219 original size:55 final size:55
Alignment explanation
Indices: 27481160--27481513 Score: 329
Period size: 55 Copynumber: 6.5 Consensus size: 55
27481150 ACATTCTTAA
* * *
27481160 ATGTGGAAAGTCTACCAAGACAATCTTATGTGGAAGTCTATAAGGACTATTTGAT
1 ATGTGGAAAGTCTACCAAGACTATCTTATGTGGAAGTCTATGAGGACTATCTGAT
* * **
27481215 ATGTGGAAAGT-TAGCTAGGACTATCTTATGTGGAAGTCCGTGAGGACTATCTGAT
1 ATGTGGAAAGTCTA-CCAAGACTATCTTATGTGGAAGTCTATGAGGACTATCTGAT
* * * * **
27481270 ATG-GACAAAGTCCACCATGACTATCTTATGTGAAAGTCTATGAGGACTGCCTGAT
1 ATGTG-GAAAGTCTACCAAGACTATCTTATGTGGAAGTCTATGAGGACTATCTGAT
* * * * * * *
27481325 ATGTGGAAAGTCTATCAGGACTATCTTATATAGAAGCCTGTAAGGACTATCTGAT
1 ATGTGGAAAGTCTACCAAGACTATCTTATGTGGAAGTCTATGAGGACTATCTGAT
* * *
27481380 ATG-GGAAAAGTCTGCCAAGACTATCTTATGTGGAAGTCCATGAGGACTATCTGGT
1 ATGTGG-AAAGTCTACCAAGACTATCTTATGTGGAAGTCTATGAGGACTATCTGAT
* * **** ** * *
27481435 ATGGGGAAATTCCGTGAAGACTATCTTATGTGGAAGTCCGTTAGGACTATCTTAT
1 ATGTGGAAAGTCTACCAAGACTATCTTATGTGGAAGTCTATGAGGACTATCTGAT
* * *
27481490 ATG-GGGAAGTCCACCAGGACTATC
1 ATGTGGAAAGTCTACCAAGACTATC
27481514 GTTTTGAGGA
Statistics
Matches: 241, Mismatches: 52, Indels: 13
0.79 0.17 0.04
Matches are distributed among these distances:
54 20 0.08
55 217 0.90
56 4 0.02
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (55 bp):
ATGTGGAAAGTCTACCAAGACTATCTTATGTGGAAGTCTATGAGGACTATCTGAT
Found at i:27481325 original size:110 final size:109
Alignment explanation
Indices: 27481166--27481513 Score: 398
Period size: 110 Copynumber: 3.2 Consensus size: 109
27481156 TTAAATGTGG
* * * * *
27481166 AAAGTCTACCAAGACAATCTTATGTGGAAGTCTATAAGGACTATTTGATATGTGGAAAGTTAGCT
1 AAAGTCCACCAAGACTATCTTATGTGGAAGTCTATGAGGACTATCTGATATGTGGAAAGTTACCT
*
27481231 AGGACTATCTTATGTGGAAGTCCGTGAGGACTATCTGATATGGA
66 AGGACTATCTTATGTGGAAGTCCGTAAGGACTATCTGATATGGA
* * ** *
27481275 CAAAGTCCACCATGACTATCTTATGTGAAAGTCTATGAGGACTGCCTGATATGTGGAAAGTCTAT
1 -AAAGTCCACCAAGACTATCTTATGTGGAAGTCTATGAGGACTATCTGATATGTGGAAAGT-TAC
* *
27481340 C-AGGACTATCTTATATAGAAG-CCTGTAAGGACTATCTGATATGGGA
64 CTAGGACTATCTTATGTGGAAGTCC-GTAAGGACTATCTGATAT-GGA
** * * *
27481386 AAAGTCTGCCAAGACTATCTTATGTGGAAGTCCATGAGGACTATCTGGTATGGGGAAA-TT-CCG
1 AAAGTCCACCAAGACTATCTTATGTGGAAGTCTATGAGGACTATCTGATATGTGGAAAGTTACC-
* * * *
27481449 TGAAGACTATCTTATGTGGAAGTCCGTTAGGACTATCTTATATGGG
65 T-AGGACTATCTTATGTGGAAGTCCGTAAGGACTATCTGATATGGA
* *
27481495 GAAGTCCACCAGGACTATC
1 AAAGTCCACCAAGACTATC
27481514 GTTTTGAGGA
Statistics
Matches: 199, Mismatches: 32, Indels: 15
0.81 0.13 0.06
Matches are distributed among these distances:
107 1 0.01
108 1 0.01
109 20 0.10
110 169 0.85
111 8 0.04
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.29
Consensus pattern (109 bp):
AAAGTCCACCAAGACTATCTTATGTGGAAGTCTATGAGGACTATCTGATATGTGGAAAGTTACCT
AGGACTATCTTATGTGGAAGTCCGTAAGGACTATCTGATATGGA
Found at i:27481459 original size:165 final size:165
Alignment explanation
Indices: 27481160--27481472 Score: 414
Period size: 165 Copynumber: 1.9 Consensus size: 165
27481150 ACATTCTTAA
* * * *
27481160 ATGTGGAAAGTCTACCAAGACAATCTTATGTGGAAGTCTATAAGGACTATTTGATATGTGGAAAG
1 ATGTGGAAAGTCTACCAAGACAATCTTATATAGAAGCCTATAAGGACTATCTGATATGTGGAAAG
* * * *
27481225 TTAGCTAGGACTATCTTATGTGGAAGTCCGTGAGGACTATCTGATATGGACAAAGTCCACCATGA
66 TTAGCCAAGACTATCTTATGTGGAAGTCCATGAGGACTATCTGATATGGACAAAGTCCACCAAGA
27481290 CTATCTTATGTGAAAGTCTATGAGGACTGCCTGAT
131 CTATCTTATGTGAAAGTCTATGAGGACTGCCTGAT
* * * *
27481325 ATGTGGAAAGTCTATCAGGACTATCTTATATAGAAGCCTGTAAGGACTATCTGATATG-GGAAAA
1 ATGTGGAAAGTCTACCAAGACAATCTTATATAGAAGCCTATAAGGACTATCTGATATGTGG-AAA
* ** * ***
27481389 GTCT-GCCAAGACTATCTTATGTGGAAGTCCATGAGGACTATCTGGTATGGGGAAATTCCGTGAA
65 GT-TAGCCAAGACTATCTTATGTGGAAGTCCATGAGGACTATCTGATATGGACAAAGTCCACCAA
*
27481453 GACTATCTTATGTGGAAGTC
129 GACTATCTTATGTGAAAGTC
27481473 CGTTAGGACT
Statistics
Matches: 126, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
164 2 0.02
165 123 0.98
166 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (165 bp):
ATGTGGAAAGTCTACCAAGACAATCTTATATAGAAGCCTATAAGGACTATCTGATATGTGGAAAG
TTAGCCAAGACTATCTTATGTGGAAGTCCATGAGGACTATCTGATATGGACAAAGTCCACCAAGA
CTATCTTATGTGAAAGTCTATGAGGACTGCCTGAT
Found at i:27481508 original size:28 final size:27
Alignment explanation
Indices: 27481398--27481513 Score: 92
Period size: 28 Copynumber: 4.3 Consensus size: 27
27481388 AGTCTGCCAA
* * *
27481398 GACTATC-TTATGTGGAAGTCCATGAG
1 GACTATCTTTATGGGGAAGTCCGTCAG
* * * *
27481424 GACTATCTGGTATGGGGAAATTCCGTGAA
1 GACTATCT-TTATGGGG-AAGTCCGTCAG
* *
27481453 GACTATC-TTATGTGGAAGTCCGTTAG
1 GACTATCTTTATGGGGAAGTCCGTCAG
**
27481479 GACTATCTTATATGGGGAAGTCCACCAG
1 GACTATCTT-TATGGGGAAGTCCGTCAG
27481507 GACTATC
1 GACTATC
27481514 GTTTTGAGGA
Statistics
Matches: 71, Mismatches: 14, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
26 22 0.31
27 7 0.10
28 27 0.38
29 15 0.21
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (27 bp):
GACTATCTTTATGGGGAAGTCCGTCAG
Found at i:27482630 original size:14 final size:15
Alignment explanation
Indices: 27482605--27482638 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
27482595 GTGGAACTCG
27482605 TTTTGAGAAATATGC
1 TTTTGAGAAATATGC
*
27482620 TTTTG-GAAATATGT
1 TTTTGAGAAATATGC
27482634 TTTTG
1 TTTTG
27482639 TATATTGAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.26, C:0.03, G:0.21, T:0.50
Consensus pattern (15 bp):
TTTTGAGAAATATGC
Found at i:27482909 original size:31 final size:31
Alignment explanation
Indices: 27482835--27482893 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
27482825 TAATTTCTAT
*
27482835 CCATGCCA-TTGGGATAATTGTAGTTTTCCAC
1 CCATGCCACTAGGG-TAATTGTAGTTTTCCAC
*
27482866 CCATGCCACTAGGGTAATTGTGGTTTTC
1 CCATGCCACTAGGGTAATTGTAGTTTTC
27482894 GACCTATTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
31 21 0.84
32 4 0.16
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (31 bp):
CCATGCCACTAGGGTAATTGTAGTTTTCCAC
Found at i:27489973 original size:19 final size:20
Alignment explanation
Indices: 27489949--27489987 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
27489939 GGCTGAAGAT
27489949 TTTTAC-TTGCGAGCTTTGA
1 TTTTACATTGCGAGCTTTGA
*
27489968 TTTTACAATTGGGAGCTTTG
1 TTTTAC-ATTGCGAGCTTTG
27489988 CTCTCACTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
21 11 0.65
ACGTcount: A:0.18, C:0.13, G:0.23, T:0.46
Consensus pattern (20 bp):
TTTTACATTGCGAGCTTTGA
Found at i:27490052 original size:69 final size:69
Alignment explanation
Indices: 27489968--27490583 Score: 405
Period size: 69 Copynumber: 9.1 Consensus size: 69
27489958 CGAGCTTTGA
* * * ** * *
27489968 TTTTACAATTGGGAGCTTTGCTCTCACTATCTATTTTAAAGGCTATGGATCTTCTCCTGTGAA-C
1 TTTTACAACTGGGAGCTTTGCTCTCACTAACTGTTTTAAAGGCTGCGGCTCTTCACCTGTGAACC
27490032 TATGT
66 T-TGT
* * * * * * *
27490037 TTTTACAGCTGGGAGCTTTGCTCTCGCTAATTGTTTTAGAGGCTGCAGCTTTTCACCTATGAACC
1 TTTTACAACTGGGAGCTTTGCTCTCACTAACTGTTTTAAAGGCTGCGGCTCTTCACCTGTGAACC
27490102 TTGT
66 TTGT
* * * ** * ** *
27490106 TTTCACAGCTGAGAGCTTTGCTCTTGCTAACTGTTTTAAAGGCTGCAGCTCTTTGCCTAG-AAAC
1 TTTTACAACTGGGAGCTTTGCTCTCACTAACTGTTTTAAAGGCTGCGGCTCTTCACCT-GTGAAC
27490170 CTTGT
65 CTTGT
** * * * * * * * *
27490175 TTTCCCAACTAGGAGCTTTACTCCCGCTAACTATTTTAAAGCCTACGGCTCTTCACCTGCGAACC
1 TTTTACAACTGGGAGCTTTGCTCTCACTAACTGTTTTAAAGGCTGCGGCTCTTCACCTGTGAACC
27490240 TT-T
66 TTGT
* * * * * * * ***
27490243 TTTTCACAACTGAGAGCTTTGCCCTTACTAATTGTTTTAGAGGTTGTGGCTCTTCGTTTGTGAAC
1 TTTT-ACAACTGGGAGCTTTGCTCTCACTAACTGTTTTAAAGGCTGCGGCTCTTCACCTGTGAAC
* *
27490308 ATTTT
65 CTTGT
** * *
27490313 TTTTACAACTGGGAGCTTTGCTCTCACTAACTGTTTTAGTGGTTGCGGCTCTTCACCTGTAAACC
1 TTTTACAACTGGGAGCTTTGCTCTCACTAACTGTTTTAAAGGCTGCGGCTCTTCACCTGTGAACC
27490378 TTGT
66 TTGT
* ** ** * ***
27490382 TTTTACAGCTGGGAGCTTTGCTCTTGCTAACTGTTTTAGGGGCTACGGCTCTTCACCTACAAAAC
1 TTTTACAACTGGGAGCTTTGCTCTCACTAACTGTTTTAAAGGCTGCGGCTCTTCACCT-GTGAAC
27490447 CTTGT
65 CTTGT
*** * * * * * * *
27490452 TTTTATTGCTGGGA-----G------CTAACTGTTTTAGAGGATACGGATCGTCATCTGTGATCC
1 TTTTACAACTGGGAGCTTTGCTCTCACTAACTGTTTTAAAGGCTGCGGCTCTTCACCTGTGAACC
*
27490506 TTTT
66 TTGT
* * * * * * * *
27490510 TTTTACAGCTGGGAGCTTTGCTCTCGCTAATTGTTTCAAAGGCTTCAGCTCTTCGCCTGTAAACC
1 TTTTACAACTGGGAGCTTTGCTCTCACTAACTGTTTTAAAGGCTGCGGCTCTTCACCTGTGAACC
27490575 TTGT
66 TTGT
27490579 TTTTA
1 TTTTA
27490584 TTGACTATAG
Statistics
Matches: 424, Mismatches: 106, Indels: 34
0.75 0.19 0.06
Matches are distributed among these distances:
58 18 0.04
59 27 0.06
63 1 0.00
65 1 0.00
68 5 0.01
69 344 0.81
70 28 0.07
ACGTcount: A:0.19, C:0.22, G:0.20, T:0.39
Consensus pattern (69 bp):
TTTTACAACTGGGAGCTTTGCTCTCACTAACTGTTTTAAAGGCTGCGGCTCTTCACCTGTGAACC
TTGT
Found at i:27490345 original size:207 final size:207
Alignment explanation
Indices: 27489979--27490439 Score: 487
Period size: 207 Copynumber: 2.2 Consensus size: 207
27489969 TTTACAATTG
* * * * * *
27489979 GGAGCTTTGCTCTCACTATCTATTTTAAAGGCTATGGATCTTCTCCTGTGAACTATGTTTTTACA
1 GGAGCTTTGCTCTCGCTAACTATTTTAAAGGCTACGGCTCTTCACCTGCGAACTATGTTTTTACA
* * * * * *
27490044 GCTGGGAGCTTTGCTCTCGCTAATTGTTTTAGAGGCTGCAGCTTTTCACCTATGAACCTTGTTTT
66 ACTGAGAGCTTTGCCCTCACTAATTGTTTTAGAGGCTGCAGCTCTTCACCTATGAACATTGTTTT
* ** **
27490109 CACAGCTGAGAGCTTTGCTCTTGCTAACTGTTTTAAAGGCTGCAGCTCTTTGCCTAG-AAACCTT
131 CACAACTGAGAGCTTTGCTCTCACTAACTGTTTTAAAGGCTGCAGCTCTTCACCT-GTAAACCTT
*
27490173 GTTTTCCCAACTA
195 GTTTTCACAACTA
* * *
27490186 GGAGCTTTACTCCCGCTAACTATTTTAAAGCCTACGGCTCTTCACCTGCGAACCT-T-TTTTTCA
1 GGAGCTTTGCTCTCGCTAACTATTTTAAAGGCTACGGCTCTTCACCTGCGAA-CTATGTTTTT-A
* * ** *** * *
27490249 CAACTGAGAGCTTTGCCCTTACTAATTGTTTTAGAGGTTGTGGCTCTTCGTTTGTGAACATTTTT
64 CAACTGAGAGCTTTGCCCTCACTAATTGTTTTAGAGGCTGCAGCTCTTCACCTATGAACATTGTT
* * ** * *
27490314 TTTACAACTGGGAGCTTTGCTCTCACTAACTGTTTTAGTGGTTGCGGCTCTTCACCTGTAAACCT
129 TTCACAACTGAGAGCTTTGCTCTCACTAACTGTTTTAAAGGCTGCAGCTCTTCACCTGTAAACCT
* * *
27490379 TGTTTTTACAGCTG
194 TGTTTTCACAACTA
* * **
27490393 GGAGCTTTGCTCTTGCTAACTGTTTTAGGGGCTACGGCTCTTCACCT
1 GGAGCTTTGCTCTCGCTAACTATTTTAAAGGCTACGGCTCTTCACCT
27490440 ACAAAACCTT
Statistics
Matches: 205, Mismatches: 46, Indels: 6
0.80 0.18 0.02
Matches are distributed among these distances:
206 6 0.03
207 197 0.96
208 2 0.01
ACGTcount: A:0.19, C:0.23, G:0.20, T:0.38
Consensus pattern (207 bp):
GGAGCTTTGCTCTCGCTAACTATTTTAAAGGCTACGGCTCTTCACCTGCGAACTATGTTTTTACA
ACTGAGAGCTTTGCCCTCACTAATTGTTTTAGAGGCTGCAGCTCTTCACCTATGAACATTGTTTT
CACAACTGAGAGCTTTGCTCTCACTAACTGTTTTAAAGGCTGCAGCTCTTCACCTGTAAACCTTG
TTTTCACAACTA
Found at i:27500355 original size:25 final size:25
Alignment explanation
Indices: 27500300--27500356 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 25
27500290 GCGAACATCT
*
27500300 AGTATCCCAGCGGGGTCCCCAATGA
1 AGTATCTCAGCGGGGTCCCCAATGA
* * * *
27500325 ACTATCTCTGCGGGGTCCCTAGTGA
1 AGTATCTCAGCGGGGTCCCCAATGA
27500350 AGTATCT
1 AGTATCT
27500357 TTACAGTGAA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.21, C:0.28, G:0.26, T:0.25
Consensus pattern (25 bp):
AGTATCTCAGCGGGGTCCCCAATGA
Found at i:27502780 original size:26 final size:26
Alignment explanation
Indices: 27502751--27502804 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
27502741 TTAATATTGA
27502751 ACATTTAAATCATCATAATTATACTT
1 ACATTTAAATCATCATAATTATACTT
27502777 ACATTTAAATCATCATAATTATACTT
1 ACATTTAAATCATCATAATTATACTT
27502803 AC
1 AC
27502805 TTTCAACACC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.43, C:0.17, G:0.00, T:0.41
Consensus pattern (26 bp):
ACATTTAAATCATCATAATTATACTT
Found at i:27505237 original size:43 final size:42
Alignment explanation
Indices: 27505180--27505285 Score: 142
Period size: 43 Copynumber: 2.5 Consensus size: 42
27505170 GAAATCTGAG
*
27505180 CTCGTTGAGCGGTCCGAGTTCGTGATATATGTGAGA-ATCTAAA
1 CTCGTTGAGTGGTCCGAGTTCGTGATATA--TGAGACATCTAAA
* * * *
27505223 CTTGTTGAGTGGTCCCAGTTCGTGATATATGAGACATCTGAG
1 CTCGTTGAGTGGTCCGAGTTCGTGATATATGAGACATCTAAA
27505265 CTCGTTGAGTGGTCCGAGTTC
1 CTCGTTGAGTGGTCCGAGTTC
27505286 ATTATGGATG
Statistics
Matches: 55, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
41 5 0.09
42 24 0.44
43 26 0.47
ACGTcount: A:0.21, C:0.18, G:0.29, T:0.32
Consensus pattern (42 bp):
CTCGTTGAGTGGTCCGAGTTCGTGATATATGAGACATCTAAA
Found at i:27505386 original size:51 final size:50
Alignment explanation
Indices: 27505300--27505398 Score: 126
Period size: 51 Copynumber: 2.0 Consensus size: 50
27505290 TGGATGCAAG
* * *
27505300 CATCCAAGCTGTTGAGTGGTCCGAGTTTATAATGGATGCGATACATGTAA
1 CATCCAAGCTGTTGAGAGGTCCAAGTTCATAATGGATGCGATACATGTAA
* * * *
27505350 CATCCGAGCTCGTTGAGAGGTCCAAGTTCATTATGGATGTGTTACATGT
1 CATCCAAGCT-GTTGAGAGGTCCAAGTTCATAATGGATGCGATACATGT
27505399 TATAAGGTAG
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
50 9 0.22
51 32 0.78
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.31
Consensus pattern (50 bp):
CATCCAAGCTGTTGAGAGGTCCAAGTTCATAATGGATGCGATACATGTAA
Found at i:27508117 original size:40 final size:40
Alignment explanation
Indices: 27508034--27508295 Score: 298
Period size: 40 Copynumber: 6.6 Consensus size: 40
27508024 TTGAATGCTG
* * * * * *
27508034 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
27508074 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
*
27508114 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
27508154 TCCGGGTTAAGT-CCGAAGGCATTCGTGTGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
27508193 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
27508233 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
27508272 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
27508296 TGAACGAGGA
Statistics
Matches: 195, Mismatches: 23, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
39 72 0.37
40 115 0.59
41 8 0.04
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:27508207 original size:79 final size:78
Alignment explanation
Indices: 27508034--27508295 Score: 328
Period size: 79 Copynumber: 3.3 Consensus size: 78
27508024 TTGAATGCTG
* * * * * *
27508034 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGATTAAGATCCGAAGGCCTT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTATTATATCCGGGTTAAG-TCCGAAGG-CAT
* *
27508098 TGTGCGAGATACTAAA
63 TGTGTGAGTTACTAAA
*
27508114 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTATATCCGGGTTAAGTCCGAAGGCATTCG
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTATATCCGGGTTAAGTCCGAAGGCATT-G
*
27508179 TGTGAGTTATTAAA
65 TGTGAGTTACTAAA
* * * *
27508193 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTG
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTATATCCGGGTTAAGT-CCGAAGGCATTG
27508258 TGTGAGTTACTAAA
65 TGTGAGTTACTAAA
* *
27508272 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
27508296 TGAACGAGGA
Statistics
Matches: 162, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
78 3 0.02
79 104 0.64
80 49 0.30
81 6 0.04
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (78 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTATATCCGGGTTAAGTCCGAAGGCATTGT
GTGAGTTACTAAA
Found at i:27508289 original size:119 final size:121
Alignment explanation
Indices: 27508035--27508295 Score: 316
Period size: 119 Copynumber: 2.2 Consensus size: 121
27508025 TGAATGCTGT
* * * *
27508035 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGATTAAGATCCGAAGGCCTTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCATTC
* * *
27508099 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTATAT
66 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAA
* * * * *
27508155 CCGGGTTAAGT-CCGAAGGCATTCGTG-TGAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGATTAAGAT-CCGAAGGCATT
* ** * *
27508217 CGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAA
65 CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAA
*
27508273 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
27508296 TGAACGAGGA
Statistics
Matches: 119, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
118 22 0.18
119 82 0.69
120 15 0.13
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.28
Consensus pattern (121 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCATTC
GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAA
Found at i:27508315 original size:79 final size:78
Alignment explanation
Indices: 27508034--27508330 Score: 305
Period size: 79 Copynumber: 3.8 Consensus size: 78
27508024 TTGAATGCTG
* * * * * *
27508034 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GAATATATCCGGATTAAGATCCGAAGGCCT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTAG-TTATATCCGGGTTAAG-TCCGAAGG-CA
* *
27508097 TTGTGCGAGATACTAAA
62 TTGTGTGAGTTACTAAA
27508114 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTA-TTATATCCGGGTTAAGTCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAG-TAGTTATATCCGGGTTAAGTCCGAAGGCATT-
*
27508178 GTGTGAGTTATTAAA
64 GTGTGAGTTACTAAA
* * *
27508193 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTG
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTAGTTATATCCGGGTTAAGT-CCGAAGGCATTG
27508258 TGTGAGTTACTAAA
65 TGTGAGTTACTAAA
* * * * ** * * *
27508272 ACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTATATCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTAGTTATATCCGGGTTAAGT-CCGAAGG
27508331 TACGTGATTT
Statistics
Matches: 186, Mismatches: 25, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
78 18 0.10
79 114 0.61
80 47 0.25
81 7 0.04
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (78 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTAGTTATATCCGGGTTAAGTCCGAAGGCATTGT
GTGAGTTACTAAA
Found at i:27516039 original size:40 final size:40
Alignment explanation
Indices: 27515956--27516178 Score: 245
Period size: 40 Copynumber: 5.6 Consensus size: 40
27515946 TTGAATGCTG
* * * * * *
27515956 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
* * * *
27515996 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
27516036 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* **
27516076 GCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
27516116 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
27516155 TCCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
27516179 TGAACGAGGA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 36 0.22
40 116 0.73
41 8 0.05
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Done.