Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 96 of 344
Found at i:32164773 original size:23 final size:22
Alignment explanation
Indices: 32164713--32164781 Score: 70
Period size: 21 Copynumber: 3.1 Consensus size: 22
32164703 TCATTCATTC
* *
32164713 ATTAAGGCCAAATTGTTTACAAA
1 ATTAAGG-CAAACTATTTACAAA
*
32164736 ATGAAGG-AAACTATTTACAAA
1 ATTAAGGCAAACTATTTACAAA
*
32164757 ATTAAGGTCAAACTA-TTACCAA
1 ATTAAGG-CAAACTATTTACAAA
32164779 ATT
1 ATT
32164782 TATCTACAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
21 18 0.46
22 9 0.23
23 12 0.31
ACGTcount: A:0.46, C:0.13, G:0.12, T:0.29
Consensus pattern (22 bp):
ATTAAGGCAAACTATTTACAAA
Found at i:32165151 original size:21 final size:21
Alignment explanation
Indices: 32165125--32165171 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
32165115 AGCTTTTGCC
* *
32165125 TTGGGGCAGCTTGTTGGTAAG
1 TTGGGGCAGCTTCTTGATAAG
* *
32165146 TTGGGGTAGCTTCTTGATGAG
1 TTGGGGCAGCTTCTTGATAAG
32165167 TTGGG
1 TTGGG
32165172 ACAAACACTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.13, C:0.09, G:0.43, T:0.36
Consensus pattern (21 bp):
TTGGGGCAGCTTCTTGATAAG
Found at i:32165838 original size:63 final size:65
Alignment explanation
Indices: 32165757--32165902 Score: 190
Period size: 65 Copynumber: 2.3 Consensus size: 65
32165747 GTAAAGGCAT
* * *
32165757 CATGTGATGGCAT-AATAA-G-CATGTGATATTAAAAAATAGTAAATGCGGGATGGGAAACACCA
1 CATGTGATGG-ATGAATAAGGACATGTGATATTAAAAAATAGTAAAGGCAGGATAGGAAACACCA
32165819 A
65 A
* * * *
32165820 CATGTGATGGATGAATAAGGACATGTGATATTAAAAAATAGTAAAGGCATGCTAGGACACACCAG
1 CATGTGATGGATGAATAAGGACATGTGATATTAAAAAATAGTAAAGGCAGGATAGGAAACACCAA
*
32165885 CATGTGATGGAAGAATAA
1 CATGTGATGGATGAATAA
32165903 AGGCTTACAT
Statistics
Matches: 72, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
62 2 0.03
63 15 0.21
64 1 0.01
65 54 0.75
ACGTcount: A:0.42, C:0.11, G:0.25, T:0.22
Consensus pattern (65 bp):
CATGTGATGGATGAATAAGGACATGTGATATTAAAAAATAGTAAAGGCAGGATAGGAAACACCAA
Found at i:32173720 original size:42 final size:43
Alignment explanation
Indices: 32173659--32173741 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 43
32173649 ACGACCTACT
* *
32173659 CACATGGTCCTGTACCTCAGTTGCACGGGTGTGT-CCCCTAGC
1 CACATGGTCCTGTACCTCAGTCGCACGGCTGTGTACCCCTAGC
* * *
32173701 CACATGGTCGTTTATCTCAGTCGCACGGCTGTGTACCCCTA
1 CACATGGTCCTGTACCTCAGTCGCACGGCTGTGTACCCCTA
32173742 TCATACGATC
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
42 29 0.83
43 6 0.17
ACGTcount: A:0.16, C:0.33, G:0.24, T:0.28
Consensus pattern (43 bp):
CACATGGTCCTGTACCTCAGTCGCACGGCTGTGTACCCCTAGC
Found at i:32175676 original size:25 final size:25
Alignment explanation
Indices: 32175648--32175697 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
32175638 TAACTAAAGA
*
32175648 AATCTAATTCACTACATATTCATAT
1 AATCCAATTCACTACATATTCATAT
* *
32175673 AATCCAATTCATTGCATATTCATAT
1 AATCCAATTCACTACATATTCATAT
32175698 TCGTACAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.38, C:0.20, G:0.02, T:0.40
Consensus pattern (25 bp):
AATCCAATTCACTACATATTCATAT
Found at i:32178514 original size:27 final size:27
Alignment explanation
Indices: 32178474--32178639 Score: 190
Period size: 27 Copynumber: 6.1 Consensus size: 27
32178464 AGGAAGCGTC
*
32178474 CTGGTGGCTATGCCACAAATATCTGAT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* *
32178501 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* * *
32178528 CTGGTGGCTTTGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* *
32178555 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* *
32178582 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAAATATCTG-AT
* * * *
32178610 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAAATATCTGAT
32178636 CTGG
1 CTGG
32178640 CAGCCATGCT
Statistics
Matches: 118, Mismatches: 20, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
26 5 0.04
27 98 0.83
28 15 0.13
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAAATATCTGAT
Found at i:32178556 original size:54 final size:54
Alignment explanation
Indices: 32178474--32178639 Score: 262
Period size: 54 Copynumber: 3.1 Consensus size: 54
32178464 AGGAAGCGTC
* *
32178474 CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
*
32178528 CTGGTGGCTTTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* * *
32178582 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACGATTATCTG-ATCTGGTGGCTCTGCCACATATATCTGTT
32178636 CTGG
1 CTGG
32178640 CAGCCATGCT
Statistics
Matches: 105, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
54 87 0.83
55 18 0.17
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:32178630 original size:81 final size:81
Alignment explanation
Indices: 32178474--32178639 Score: 237
Period size: 81 Copynumber: 2.0 Consensus size: 81
32178464 AGGAAGCGTC
* *
32178474 CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTTT
1 CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGGTGACTCT
32178539 GCCACGATTATCTGAT
66 GCCACGATTATCTGAT
* * *
32178555 CTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGAT-TATCTGTATCTGGTGACT
1 CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCAC-ATATATCTGT-TCTGGTGACT
* *
32178619 CTGTCAC-ATTATCTGTT
64 CTGCCACGATTATCTGAT
32178636 CTGG
1 CTGG
32178640 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
81 60 0.79
82 16 0.21
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.36
Consensus pattern (81 bp):
CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGGTGACTCT
GCCACGATTATCTGAT
Found at i:32197475 original size:30 final size:29
Alignment explanation
Indices: 32197377--32197477 Score: 87
Period size: 30 Copynumber: 3.4 Consensus size: 29
32197367 CGAGTTTAAA
* *
32197377 CTAAAATGAGCTAAGTTTTAGCT-GTGAG
1 CTAAATTGAGCTAAGGTTTAGCTCGTGAG
* * * * * * *
32197405 CTAAGTTGAGCTGAGGCTAAACTCCTAAG
1 CTAAATTGAGCTAAGGTTTAGCTCGTGAG
*
32197434 CTGAAGTTGAGCTAAGGTTTAGCTCGTGAG
1 CT-AAATTGAGCTAAGGTTTAGCTCGTGAG
32197464 CTAAATATGAGCTA
1 CTAAAT-TGAGCTA
32197478 GGAGTGAGCT
Statistics
Matches: 54, Mismatches: 16, Indels: 4
0.73 0.22 0.05
Matches are distributed among these distances:
28 16 0.30
29 8 0.15
30 30 0.56
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.29
Consensus pattern (29 bp):
CTAAATTGAGCTAAGGTTTAGCTCGTGAG
Found at i:32200092 original size:40 final size:40
Alignment explanation
Indices: 32199856--32200078 Score: 269
Period size: 40 Copynumber: 5.6 Consensus size: 40
32199846 TGAATGATGT
* * * *
32199856 CCGGGCTAAGT-CCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* ** *
32199895 CCGGACTAAGAT-ATGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
32199935 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
32199973 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
32200014 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
32200054 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
32200079 AACGAGTAGC
Statistics
Matches: 162, Mismatches: 15, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
39 42 0.26
40 111 0.69
41 9 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:32203375 original size:40 final size:40
Alignment explanation
Indices: 32203244--32203568 Score: 446
Period size: 40 Copynumber: 8.2 Consensus size: 40
32203234 CCTTCGGAGT
* * *
32203244 TTAG-CCGGATATAGCT-ACTAGCTCAAATACCTTCGGGAC
1 TTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGAC
* * * *
32203283 TTAGCCCGGTTATAGTAACTCGCACGAA-GGC-ACGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
*
32203321 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
*
32203361 TTAGCCCGGATATAGTAACTCGTACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* *
32203401 TTAGCCCGGATATAGTAACTCGCACAAATGTCTTCAGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
*
32203441 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
*
32203481 TTAGCCCAGATATAGTAACTCGCACAAATGCCTTCGGG-C
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* * *
32203520 TTAGCCC-GAAATTAGTCACTAGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGAC
32203560 TTAGCCCGG
1 TTAGCCCGG
32203569 TTATTAATCC
Statistics
Matches: 256, Mismatches: 23, Indels: 12
0.88 0.08 0.04
Matches are distributed among these distances:
38 36 0.14
39 40 0.16
40 179 0.70
41 1 0.00
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:32209259 original size:21 final size:23
Alignment explanation
Indices: 32209217--32209264 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 23
32209207 AAATTGTAGC
32209217 AAAATACTGAAAAAATAACAA-G
1 AAAATACTGAAAAAATAACAAGG
*
32209239 AAAATAGT-AAAAAA-AAGCAAGG
1 AAAATACTGAAAAAATAA-CAAGG
32209261 AAAA
1 AAAA
32209265 ACAACAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
20 2 0.09
21 9 0.39
22 12 0.52
ACGTcount: A:0.71, C:0.06, G:0.12, T:0.10
Consensus pattern (23 bp):
AAAATACTGAAAAAATAACAAGG
Found at i:32214411 original size:217 final size:219
Alignment explanation
Indices: 32214015--32214415 Score: 578
Period size: 217 Copynumber: 1.8 Consensus size: 219
32214005 GCCTACACGA
* * * *
32214015 CCCAACTTGGCCCAAAATTACCCAATACGACCTCGGCCCATGAATTCTCTCATGACGGCCTCGTC
1 CCCAACTTAGCCCAAAATTACCCAATACGACCTCAGCCCACGAATTCGCTCATGACGGCCTCGTC
* *
32214080 GACCATCCACTCATGTTTAGTTACACAGGCTACCACATGGGTAACCGCATGCCCGTGTGGTGCCG
66 GACCATCCACCCATGTTTAGTCACACAGGCTACCACATGGGTAACCGCATGCCCGTGTGGTGCCG
*
32214145 ACTAATCGGACCTTTCGGCTTTTGTCGATTTCCACAGTTTAGATAGTGTTTACATGTCTATGTGG
131 ACTAATCGCACCTTTCGGCTTTTGTCGATTTCCACAGTTTAGATAGTGTTTACATGTCTATGTGG
32214210 TTTAACCGTGTGGGGCCCACATAG
196 TTTAACCGTGTGGGGCCCACATAG
* * *
32214234 CCCAACTTAGCCC-AAA-TAGCCAATACGGCCTCAGCCCACGAATTCGCTCATGAGGGCCTCGTC
1 CCCAACTTAGCCCAAAATTACCCAATACGACCTCAGCCCACGAATTCGCTCATGACGGCCTCGTC
* * * * * * *
32214297 TACCATCCGCCCATGTTTGGTCACAC-GGTTACCACATGGGTAGCCGTATGCCCGTGTGGTGTC-
66 GACCATCCACCCATGTTTAGTCACACAGGCTACCACATGGGTAACCGCATGCCCGTGTGGTGCCG
*
32214360 ATCTAATCGCACCTTTCGGCTTTT-TACCGATTTCCACAGTTTAGGTAGTGTTTACA
131 A-CTAATCGCACCTTTCGGCTTTTGT--CGATTTCCACAGTTTAGATAGTGTTTACA
32214416 CACCTGTCTT
Statistics
Matches: 161, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
215 2 0.01
216 54 0.34
217 90 0.56
218 3 0.02
219 12 0.07
ACGTcount: A:0.21, C:0.30, G:0.21, T:0.28
Consensus pattern (219 bp):
CCCAACTTAGCCCAAAATTACCCAATACGACCTCAGCCCACGAATTCGCTCATGACGGCCTCGTC
GACCATCCACCCATGTTTAGTCACACAGGCTACCACATGGGTAACCGCATGCCCGTGTGGTGCCG
ACTAATCGCACCTTTCGGCTTTTGTCGATTTCCACAGTTTAGATAGTGTTTACATGTCTATGTGG
TTTAACCGTGTGGGGCCCACATAG
Found at i:32217372 original size:17 final size:17
Alignment explanation
Indices: 32217350--32217394 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 17
32217340 TTTACCCGTA
32217350 TAGGGCCCACAAGCCCG
1 TAGGGCCCACAAGCCCG
*
32217367 TAGGGCCCACAAGCCTG
1 TAGGGCCCACAAGCCCG
32217384 T-GAGGCCCACA
1 TAG-GGCCCACA
32217395 TGGCCCAACT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
16 1 0.04
17 25 0.96
ACGTcount: A:0.24, C:0.38, G:0.29, T:0.09
Consensus pattern (17 bp):
TAGGGCCCACAAGCCCG
Found at i:32229850 original size:54 final size:54
Alignment explanation
Indices: 32229773--32229938 Score: 244
Period size: 54 Copynumber: 3.1 Consensus size: 54
32229763 AGGAAGCGTC
* * * *
32229773 CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGGT
1 CTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
32229827 CTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* * **
32229881 CTAGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTTACAT-TATCTGTT
1 CTGGTGGCTCTGCCACGATTATCTG-ATCTGGTGGCTCTGCCACATATATCTGTT
32229935 CTGG
1 CTGG
32229939 CAGCCATGCT
Statistics
Matches: 102, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
54 85 0.83
55 17 0.17
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:32229928 original size:27 final size:26
Alignment explanation
Indices: 32229773--32229938 Score: 197
Period size: 27 Copynumber: 6.2 Consensus size: 26
32229763 AGGAAGCGTC
* *
32229773 CTGGTGGCTATGCCACAAATATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
32229800 CTGGTGGCTCTGCCACATATATCTGGT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
32229827 CTGGTGGCTCTGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
32229854 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
32229881 CTAGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* ** *
32229909 CTGGTGACTCTGTTACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
32229935 CTGG
1 CTGG
32229939 CAGCCATGCT
Statistics
Matches: 122, Mismatches: 12, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
26 8 0.07
27 97 0.80
28 17 0.14
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:32229929 original size:81 final size:81
Alignment explanation
Indices: 32229773--32229938 Score: 219
Period size: 81 Copynumber: 2.0 Consensus size: 81
32229763 AGGAAGCGTC
* * *
32229773 CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGGTCTGGTGGCTCT
1 CTGGTGGCTATGCCACAAATATCTGATCTAGTGGCTCTGCCACATATATCTGATCTGGTGACTCT
32229838 GCCACGATTATCTGAT
66 GCCACGATTATCTGAT
* * *
32229854 CTGGTGGCTCTGCCACATATATCTGTTCTAGTGGCTCTGCCACGAT-TATCTGTATCTGGTGACT
1 CTGGTGGCTATGCCACAAATATCTGATCTAGTGGCTCTGCCAC-ATATATCTG-ATCTGGTGACT
** *
32229918 CTGTTAC-ATTATCTGTT
64 CTGCCACGATTATCTGAT
32229935 CTGG
1 CTGG
32229939 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
81 58 0.78
82 16 0.22
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (81 bp):
CTGGTGGCTATGCCACAAATATCTGATCTAGTGGCTCTGCCACATATATCTGATCTGGTGACTCT
GCCACGATTATCTGAT
Found at i:32231148 original size:14 final size:14
Alignment explanation
Indices: 32231129--32231157 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
32231119 GAAGTTTGGC
32231129 AAAAATATCAATTT
1 AAAAATATCAATTT
32231143 AAAAATATCAATTT
1 AAAAATATCAATTT
32231157 A
1 A
32231158 GATTATAGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AAAAATATCAATTT
Found at i:32235573 original size:20 final size:20
Alignment explanation
Indices: 32235548--32235589 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
32235538 TATTTAATCT
32235548 AAGCGTTTGGGAATGTACTC
1 AAGCGTTTGGGAATGTACTC
32235568 AAGCGTTTGGGAATGTACTC
1 AAGCGTTTGGGAATGTACTC
32235588 AA
1 AA
32235590 CCATTTCTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.29
Consensus pattern (20 bp):
AAGCGTTTGGGAATGTACTC
Found at i:32242584 original size:19 final size:19
Alignment explanation
Indices: 32242557--32242603 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 19
32242547 TTTACAAGAA
32242557 AATAT-TGAAAAATA-AAG
1 AATATATGAAAAATATAAG
32242574 AATATAGTGAAAAATATAAG
1 AATATA-TGAAAAATATAAG
32242594 AATATATGAA
1 AATATATGAA
32242604 TATTGTAGTC
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.19
19 13 0.48
20 9 0.33
ACGTcount: A:0.62, C:0.00, G:0.13, T:0.26
Consensus pattern (19 bp):
AATATATGAAAAATATAAG
Found at i:32243148 original size:22 final size:22
Alignment explanation
Indices: 32243123--32243198 Score: 82
Period size: 22 Copynumber: 3.5 Consensus size: 22
32243113 TTCACACTTT
*
32243123 GGTGCTTAGTGATTTTCATTTC
1 GGTGCTTACTGATTTTCATTTC
32243145 GGTGCTTACTG-TTTTGCATTTC
1 GGTGCTTACTGATTTT-CATTTC
* * * *
32243167 TGTGCTTATTGATTTGCACTTC
1 GGTGCTTACTGATTTTCATTTC
*
32243189 GGTGCCTACT
1 GGTGCTTACT
32243199 CTTCTATTAG
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
21 4 0.09
22 37 0.84
23 3 0.07
ACGTcount: A:0.12, C:0.18, G:0.22, T:0.47
Consensus pattern (22 bp):
GGTGCTTACTGATTTTCATTTC
Found at i:32250828 original size:3 final size:3
Alignment explanation
Indices: 32250807--32250991 Score: 130
Period size: 3 Copynumber: 61.7 Consensus size: 3
32250797 TACTATTGTC
* * * **
32250807 ATT ATT AAT ATAT ACT ATT ATT ATT ATT ATT AAT A-T ATT GCT ATT
1 ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * **
32250852 ATT ATT ATT ATT ATT ACT AAT ATC ACT ATT ACC ATT -TT -TT ATT ACTT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT
* *
32250899 -TT ATT ATT ATT ATT ATT ATT ATTT ACT ATCT AAT A-T ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT A-TT ATT AT-T ATT ATT ATT ATT ATT
* * *
32250944 ACCTT ATT ATT ATT ATT ACT ATT -GT ATT ATT ACT ATT ATT ATT ATT
1 A--TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
32250990 AT
1 AT
32250992 ATTTTCTTTT
Statistics
Matches: 142, Mismatches: 29, Indels: 22
0.74 0.15 0.11
Matches are distributed among these distances:
2 11 0.08
3 119 0.84
4 9 0.06
5 3 0.02
ACGTcount: A:0.34, C:0.08, G:0.01, T:0.58
Consensus pattern (3 bp):
ATT
Found at i:32250851 original size:23 final size:24
Alignment explanation
Indices: 32250797--32250861 Score: 78
Period size: 25 Copynumber: 2.7 Consensus size: 24
32250787 TATTATTTTC
* *
32250797 TACTATTGTCATTATTAATATATA
1 TACTATTATTATTATTAATATATA
*
32250821 CTATTATTATTATTATTAATATAT-
1 -TACTATTATTATTATTAATATATA
*
32250845 TGCTATTATTATTATTA
1 TACTATTATTATTATTA
32250862 TTATTACTAA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
23 15 0.43
25 20 0.57
ACGTcount: A:0.35, C:0.06, G:0.03, T:0.55
Consensus pattern (24 bp):
TACTATTATTATTATTAATATATA
Found at i:32250980 original size:23 final size:23
Alignment explanation
Indices: 32250797--32250994 Score: 95
Period size: 23 Copynumber: 8.5 Consensus size: 23
32250787 TATTATTTTC
* *
32250797 TACTATTGTCATTATTAATA-TA-
1 TACTATTAT-ATTATTACTATTAT
*
32250819 TACTATTATTATTATTATTAATATAT
1 TACTATTA-TATTATTACT-AT-TAT
* *
32250845 TGCTA-T-TATTATTATTATTAT
1 TACTATTATATTATTACTATTAT
* * *
32250866 TACTAATATCACTATTACCATT-T
1 TACTATTAT-ATTATTACTATTAT
* * *
32250889 T-TTATTACTTTTATTATTATTAT
1 TACTATTA-TATTATTACTATTAT
* *
32250912 TATTATTAT-TTACTATCTAATATAT
1 TACTATTATATTATTA-CT-AT-TAT
* ** *
32250937 TATTATTACCTTATTATTATTAT
1 TACTATTATATTATTACTATTAT
*
32250960 TACTATTGTATTATTACTATTAT
1 TACTATTATATTATTACTATTAT
*
32250983 TATTATTATATT
1 TACTATTATATT
32250995 TTCTTTTTTT
Statistics
Matches: 136, Mismatches: 25, Indels: 29
0.72 0.13 0.15
Matches are distributed among these distances:
21 7 0.05
22 35 0.26
23 51 0.38
24 19 0.14
25 15 0.11
26 9 0.07
ACGTcount: A:0.33, C:0.08, G:0.02, T:0.58
Consensus pattern (23 bp):
TACTATTATATTATTACTATTAT
Found at i:32251183 original size:3 final size:3
Alignment explanation
Indices: 32251154--32251365 Score: 114
Period size: 3 Copynumber: 71.7 Consensus size: 3
32251144 CAAACTTTAG
* * **
32251154 ATT ATTT ATT ATT -TGT ATT GTT GTT ATT ATT ATT ATTT ATT ATT ACC
1 ATT A-TT ATT ATT AT-T ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT
* * * *
32251201 ATT ATT ATT ACT ATT ATT TTT ACTT -TT ATT ACT ATT ACT A-T ATT
1 ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT
* * * * * * * *
32251245 ATT TTT ATT TTT ATT -TT CTT A-T ACT ATT ATC ATC ATT ATT AAT ACT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * **
32251291 AAT ATT AAT ATT CTT ATT ATT ACT ATT ATT ATT ATC ATT AGC ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* *
32251339 ATT -TT -TT ACT ACT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
32251366 CGTTTTCATT
Statistics
Matches: 160, Mismatches: 39, Indels: 20
0.73 0.18 0.09
Matches are distributed among these distances:
2 13 0.08
3 138 0.86
4 9 0.06
ACGTcount: A:0.30, C:0.08, G:0.02, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:32263307 original size:44 final size:44
Alignment explanation
Indices: 32263259--32263671 Score: 192
Period size: 44 Copynumber: 9.4 Consensus size: 44
32263249 GCGGAGTAGA
* *
32263259 TCGAAGCTACAAATCTTTTCTCCCTAAAATGGCACTGGAGCT-GC
1 TCGAAGCTACAAATCTTTTCTCCTTGAAATGGCACTGGAG-TGGC
* * * * * * ** * * *
32263303 TCGAAGCCATAATTCATATCTCCTTGAAGTTTCAATGGAGTAGA
1 TCGAAGCTACAAATCTTTTCTCCTTGAAATGGCACTGGAGTGGC
* *
32263347 TCGAAGCTACAAATCTCTTCTCCTTGAAATGGAACTGGAGTGGC
1 TCGAAGCTACAAATCTTTTCTCCTTGAAATGGCACTGGAGTGGC
* * ** * * ** *
32263391 TCGAAGCCAC-AAT-TTGCATCTCCTTGAAATTTCAGTAGAGAAGA
1 TCGAAGCTACAAATCTT--TTCTCCTTGAAATGGCACTGGAGTGGC
* * *
32263435 TCGAAGCTACAAATCTCTTCTCCCTGAAATGGCACTAGAGTGGC
1 TCGAAGCTACAAATCTTTTCTCCTTGAAATGGCACTGGAGTGGC
* * * * * * ** * *
32263479 TCGAAGCCATAATTCGTATCTCCTTGAAGTTTCAGC-GGAGTAGA
1 TCGAAGCTACAAATCTTTTCTCCTTGAAATGGCA-CTGGAGTGGC
* * * * *
32263523 TCAAAGCTACAAATCTCTTCTCCCTGAAATGGCACTAGAGTAGC
1 TCGAAGCTACAAATCTTTTCTCCTTGAAATGGCACTGGAGTGGC
* * * ** * ** *
32263567 TCAAAGCCAC-AAT-TTGTATCTCCTTGAAGTTTCAGC-GAAGAAGA
1 TCGAAGCTACAAATCTT-T-TCTCCTTGAAATGGCA-CTGGAGTGGC
* * * *
32263611 TCGAAGCTACAAATCTCTTCTCCATGAAATGGCGCTAGAGTGGC
1 TCGAAGCTACAAATCTTTTCTCCTTGAAATGGCACTGGAGTGGC
* * *
32263655 TCAAAGCCACAAGTCTT
1 TCGAAGCTACAAATCTT
32263672 ATCTACCTGA
Statistics
Matches: 257, Mismatches: 99, Indels: 26
0.67 0.26 0.07
Matches are distributed among these distances:
42 2 0.01
43 10 0.04
44 234 0.91
45 9 0.04
46 2 0.01
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.27
Consensus pattern (44 bp):
TCGAAGCTACAAATCTTTTCTCCTTGAAATGGCACTGGAGTGGC
Found at i:32263343 original size:88 final size:88
Alignment explanation
Indices: 32263223--32263694 Score: 642
Period size: 88 Copynumber: 5.4 Consensus size: 88
32263213 GCTAGAAATT
* *
32263223 ACAATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTTTTCTCCCTAAAA
1 ACAATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
*
32263288 TGGCACTGGAGCT-GCTCGAAGCC
66 TGGCACTAGAG-TGGCTCGAAGCC
* * ** *
32263311 ATAATTCATATCTCCTTGAAGTTTCAATGGAGTAGATCGAAGCTACAAATCTCTTCTCCTTGAAA
1 ACAATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
* *
32263376 TGGAACTGGAGTGGCTCGAAGCC
66 TGGCACTAGAGTGGCTCGAAGCC
* * * ** *
32263399 ACAATTTGCATCTCCTTGAAATTTCAGTAGAGAAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
1 ACAATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
32263464 TGGCACTAGAGTGGCTCGAAGCC
66 TGGCACTAGAGTGGCTCGAAGCC
* *
32263487 ATAATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCAAAGCTACAAATCTCTTCTCCCTGAAA
1 ACAATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
* *
32263552 TGGCACTAGAGTAGCTCAAAGCC
66 TGGCACTAGAGTGGCTCGAAGCC
* * * *
32263575 ACAATTTGTATCTCCTTGAAGTTTCAGCGAAGAAGATCGAAGCTACAAATCTCTTCTCCATGAAA
1 ACAATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
* *
32263640 TGGCGCTAGAGTGGCTCAAAGCC
66 TGGCACTAGAGTGGCTCGAAGCC
* * * *
32263663 ACAAGTCTTATCTACC-TGAAGTTGCAGTGGAG
1 ACAATTCGTATCT-CCTTGAAGTTTCAGCGGAG
32263695 CAAATTGAAG
Statistics
Matches: 339, Mismatches: 43, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
87 1 0.00
88 336 0.99
89 2 0.01
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (88 bp):
ACAATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
TGGCACTAGAGTGGCTCGAAGCC
Found at i:32263734 original size:45 final size:45
Alignment explanation
Indices: 32263668--32264276 Score: 353
Period size: 44 Copynumber: 13.4 Consensus size: 45
32263658 AAGCCACAAG
*
32263668 TCTTATCTAC-CTGAAGTTGCAGTGGAGCAAATTGAAGATAGCAAA
1 TCTTATCT-CTCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAA
* * *
32263713 TCTTATTTCTCTGAAGCTGCAGTGGAACAGATTGAAGCTATAAGTCACAAA
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAG--AT-AG---CAAA
* * *
32263764 TCTTATCTCTCTGAAGTTGCAGTAGAGTAGA-TCAA-A-A-CAAA
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAA
* * * * *
32263805 CCTTATCTCTCTGAAGTTGCAATGGAGCAGGTTGAAG-TCGCTAA
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAA
* * * *
32263849 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAATATAGCAAA
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAA
* * * * *
32263894 TTTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAATCACAAA
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAG--AT--A--GCAAA
* * * * *
32263945 TATTATCTCTCTGAAGTTGTAGTAGAGTAGA-TCAA-A-A-CAAA
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAA
* * * * * *
32263986 CCTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTGAAG-TCA-CTAG
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGAT-AGCAAA
* * * *
32264030 TCTTATCTC-CTTGAAGTTGCAATGGAGCAGACTGAAGATAGTAGA
1 TCTTATCTCTC-TGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAA
* * * * *
32264075 TCTTATTTTTCCTGAAGTTGCAGTGGAACAGATTGAAACTATAAGTAAATAGA
1 TCTTATCTCT-CTGAAGTTGCAGTGGAGCAGATTG-AA-GAT-AG--CA-A-A
* * *
32264128 TTTTATCTCTCTGAAGTTGCAGTAGAGCAGA-TCAA-A-A-CAAA
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAA
* * *
32264169 CCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAG-T--CATAA
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCA-AA
* * *
32264212 GTCTTATCTC-CATGAAGTTGCAGTGGAGCAGGTTCAAAGCTA-CAAA
1 -TCTTATCTCTC-TGAAGTTGCAGTGGAGCAGATT-GAAGATAGCAAA
* *
32264258 CCTTATTTCTCTGAAGTTG
1 TCTTATCTCTCTGAAGTTG
32264277 TACTGGATTG
Statistics
Matches: 435, Mismatches: 85, Indels: 88
0.72 0.14 0.14
Matches are distributed among these distances:
41 86 0.20
42 12 0.03
43 5 0.01
44 99 0.23
45 94 0.22
46 25 0.06
47 11 0.03
48 5 0.01
49 3 0.01
50 8 0.02
51 60 0.14
52 19 0.04
53 8 0.02
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (45 bp):
TCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAA
Found at i:32264185 original size:183 final size:181
Alignment explanation
Indices: 32263666--32264242 Score: 856
Period size: 181 Copynumber: 3.2 Consensus size: 181
32263656 CAAAGCCACA
* * * *
32263666 AGTCTTATCTACCTGAAGTTGCAGTGGAGCAAATTGAAGATAGCAAATCTTATTTCT-CTGAAGC
1 AGTCTTATCT-CCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTTTCCTGAAGT
*
32263730 TGCAGTGGAACAGATTGAAGCTATAAGTCACAAATCTTATCTCTCTGAAGTTGCAGTAGAGTAGA
65 TGCAGTGGAACAGATTGAAGCTATAAGTCACAAATATTATCTCTCTGAAGTTGCAGTAGAGTAGA
* * *
32263795 TCAAAACAAACCTTATCTCTCTGAAGTTGCAATGGAGCAGGTTGAAGTCGCT
130 TCAAAACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTCACT
* * * * *
32263847 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAATATAGCAAATTTTA-TTTCCCTGAAGT
1 AGTCTTATCT-CCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTTTCCTGAAGT
* *
32263911 TGCAGTGGAACAGATTGAAGCTATAAATCACAAATATTATCTCTCTGAAGTTGTAGTAGAGTAGA
65 TGCAGTGGAACAGATTGAAGCTATAAGTCACAAATATTATCTCTCTGAAGTTGCAGTAGAGTAGA
*
32263976 TCAAAACAAACCTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTGAAGTCACT
130 TCAAAACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTCACT
* * *
32264028 AGTCTTATCTCCTTGAAGTTGCAATGGAGCAGACTGAAGATAGTAGATCTTATTTTTCCTGAAGT
1 AGTCTTATCTCC-TGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTTTCCTGAAGT
* * * *
32264093 TGCAGTGGAACAGATTGAAACTATAAGT-AAATAGATTTTATCTCTCTGAAGTTGCAGTAGAGCA
65 TGCAGTGGAACAGATTGAAGCTATAAGTCACA-A-ATATTATCTCTCTGAAGTTGCAGTAGAGTA
32264157 GATCAAAACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTCA-T
128 GATCAAAACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTCACT
32264210 AAGTCTTATCTCCATGAAGTTGCAGTGGAGCAG
1 -AGTCTTATCTCC-TGAAGTTGCAGTGGAGCAG
32264243 GTTCAAAGCT
Statistics
Matches: 356, Mismatches: 34, Indels: 10
0.89 0.09 0.03
Matches are distributed among these distances:
180 4 0.01
181 205 0.58
182 39 0.11
183 108 0.30
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.29
Consensus pattern (181 bp):
AGTCTTATCTCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTTTCCTGAAGTT
GCAGTGGAACAGATTGAAGCTATAAGTCACAAATATTATCTCTCTGAAGTTGCAGTAGAGTAGAT
CAAAACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTCACT
Found at i:32267047 original size:3 final size:3
Alignment explanation
Indices: 32267039--32267211 Score: 82
Period size: 3 Copynumber: 57.0 Consensus size: 3
32267029 AAATAGTACC
* *
32267039 AAT AAT AAT AAAT AAT AA- AAGT AAT AAT AAT CAC AAT AAT AAT AAT
1 AAT AAT AAT -AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * ** *
32267085 AAT AAT AAAG AAT AAC AAT AAT -AC AAG AAC AA- AAG AAT GGT GAT
1 AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * * ** *
32267129 AAT ACT ACT ACT ACT AAA AAT AAT AAT GAT AGT AAT AGC AAT AAA AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
32267177 AAAT AAT AAT AAT AAT AAT AAT AAGT GAT AAT AAT
1 -AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT
32267212 TAGAATAAAG
Statistics
Matches: 130, Mismatches: 32, Indels: 16
0.73 0.18 0.09
Matches are distributed among these distances:
2 5 0.04
3 113 0.87
4 12 0.09
ACGTcount: A:0.61, C:0.06, G:0.07, T:0.26
Consensus pattern (3 bp):
AAT
Found at i:32267076 original size:12 final size:12
Alignment explanation
Indices: 32266983--32267092 Score: 54
Period size: 12 Copynumber: 9.4 Consensus size: 12
32266973 AGAAATTTAA
*
32266983 AATAATAATAAT
1 AATAATAACAAT
32266995 AATAATATA-AAT
1 AATAATA-ACAAT
*
32267007 AGTAATAGA-AA-
1 AATAATA-ACAAT
**
32267018 AGCAATAACAGA-
1 AATAATAACA-AT
* *
32267030 AATAGTACCAAT
1 AATAATAACAAT
32267042 AATAAT-A-AAT
1 AATAATAACAAT
*
32267052 AATAA-AAGTAAT
1 AATAATAA-CAAT
*
32267064 AATAATCACAAT
1 AATAATAACAAT
*
32267076 AATAATAATAAT
1 AATAATAACAAT
32267088 AATAA
1 AATAA
32267093 AGAATAACAA
Statistics
Matches: 77, Mismatches: 13, Indels: 16
0.73 0.12 0.15
Matches are distributed among these distances:
10 10 0.13
11 8 0.10
12 57 0.74
13 2 0.03
ACGTcount: A:0.64, C:0.05, G:0.05, T:0.25
Consensus pattern (12 bp):
AATAATAACAAT
Found at i:32267104 original size:16 final size:17
Alignment explanation
Indices: 32267079--32267113 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
32267069 TCACAATAAT
*
32267079 AATAATAATAATA-AAG
1 AATAACAATAATACAAG
32267095 AATAACAATAATACAAG
1 AATAACAATAATACAAG
32267112 AA
1 AA
32267114 CAAAAGAATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.69, C:0.06, G:0.06, T:0.20
Consensus pattern (17 bp):
AATAACAATAATACAAG
Found at i:32267193 original size:22 final size:22
Alignment explanation
Indices: 32267168--32267211 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
32267158 TAGTAATAGC
32267168 AATAAAAATAAATAATAATAAT
1 AATAAAAATAAATAATAATAAT
* * *
32267190 AATAATAATAAGTGATAATAAT
1 AATAAAAATAAATAATAATAAT
32267212 TAGAATAAAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.30
Consensus pattern (22 bp):
AATAAAAATAAATAATAATAAT
Found at i:32268469 original size:3 final size:3
Alignment explanation
Indices: 32268448--32268614 Score: 83
Period size: 3 Copynumber: 55.7 Consensus size: 3
32268438 CTCTACAGTC
* * * **
32268448 ATT ATT AAT ATAT ACT ATT ATT ATT AAT A-T ATT GCT ATT ATT ATT
1 ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * ** * *
32268493 ACT AAT ATC ACT ATT ACC ATT -TT -TT ATT ACT GTT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * *
32268539 ATT ATTT ACT ATCT AAT A-T ATT ATT ATT ACCTT TTT ATT ATT ATT ACT
1 ATT A-TT ATT AT-T ATT ATT ATT ATT ATT A--TT ATT ATT ATT ATT ATT
* *
32268587 ATT -GT ATT ATT ACT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
32268615 ATTTTCTTTT
Statistics
Matches: 120, Mismatches: 35, Indels: 18
0.69 0.20 0.10
Matches are distributed among these distances:
2 9 0.08
3 102 0.85
4 7 0.06
5 2 0.02
ACGTcount: A:0.33, C:0.08, G:0.02, T:0.57
Consensus pattern (3 bp):
ATT
Found at i:32268535 original size:28 final size:31
Alignment explanation
Indices: 32268504--32268614 Score: 79
Period size: 31 Copynumber: 3.6 Consensus size: 31
32268494 CTAATATCAC
*
32268504 TATTACCATTTTTTATTA-CT-GT-TATTAT
1 TATTACCATTTTTTATTATCTAATATATTAT
** * *
32268532 TATTATTATTATTTACTATCTAATATATTAT
1 TATTACCATTTTTTATTATCTAATATATTAT
* *
32268563 TATTACCTTTTTATTATTAT-TACTAT-TGTAT
1 TATTACCATTTT-TTATTATCTAATATAT-TAT
*
32268594 TATTACTATTATTATTATTAT
1 TATTACCATT-TT-TTATTAT
32268615 ATTTTCTTTT
Statistics
Matches: 64, Mismatches: 13, Indels: 8
0.75 0.15 0.09
Matches are distributed among these distances:
28 14 0.22
29 2 0.03
30 2 0.03
31 30 0.47
32 16 0.25
ACGTcount: A:0.30, C:0.08, G:0.02, T:0.60
Consensus pattern (31 bp):
TATTACCATTTTTTATTATCTAATATATTAT
Found at i:32268579 original size:17 final size:17
Alignment explanation
Indices: 32268557--32268598 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
32268547 CTATCTAATA
*
32268557 TATTATTATTACCT-TTT
1 TATTATTATTA-CTATTG
32268574 TATTATTATTACTATTG
1 TATTATTATTACTATTG
32268591 TATTATTA
1 TATTATTA
32268599 CTATTATTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 2 0.09
17 21 0.91
ACGTcount: A:0.29, C:0.07, G:0.02, T:0.62
Consensus pattern (17 bp):
TATTATTATTACTATTG
Found at i:32268594 original size:14 final size:15
Alignment explanation
Indices: 32268577--32268617 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
32268567 ACCTTTTTAT
32268577 TATTATTACTATT-G
1 TATTATTACTATTAG
*
32268591 TATTATTACTATTAT
1 TATTATTACTATTAG
32268606 TATTATTA-TATT
1 TATTATTACTATT
32268618 TTCTTTTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 17 0.68
15 8 0.32
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61
Consensus pattern (15 bp):
TATTATTACTATTAG
Found at i:32268752 original size:26 final size:25
Alignment explanation
Indices: 32268706--32268756 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 25
32268696 TTATTTATAT
32268706 ATCATTACTTTTATTGTTATCATTTC
1 ATCATTACTTTTATTGTTATC-TTTC
32268732 ATCATTTA-TTTTATT-TATATCTTTC
1 ATCA-TTACTTTTATTGT-TATCTTTC
32268757 TAAATAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
25 5 0.22
26 15 0.65
27 3 0.13
ACGTcount: A:0.24, C:0.14, G:0.02, T:0.61
Consensus pattern (25 bp):
ATCATTACTTTTATTGTTATCTTTC
Found at i:32268798 original size:3 final size:3
Alignment explanation
Indices: 32268777--32269012 Score: 158
Period size: 3 Copynumber: 78.7 Consensus size: 3
32268767 CAAACTTTAG
* * **
32268777 ATT ATTT ATT ATT -TGT ATT ATT GTT ATT ATT ACT ATTT ATT ATT ACC
1 ATT A-TT ATT ATT AT-T ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT
* * * *
32268824 ATT ATT ATT ACT ATT ATT TTT ACTT -TT ATT ACT ATT ACT A-T ATT
1 ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT
* * * * * * *
32268868 ATT TTT ATT TTT ATT TTCT ATT ACT ATT ATC ATT ATT ATT AAT ACT
1 ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * *
32268914 AAT ATT AAT ATT CTT ATT ATT ACT ATT ATT ATT ATC ATT AGT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * *
32268962 ATT -TT -TT ACT ACT ACT ATT ATT ATT ATT ATT ATC AAT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
32269008 ATT AT
1 ATT AT
32269013 CGTTTTCATT
Statistics
Matches: 179, Mismatches: 45, Indels: 18
0.74 0.19 0.07
Matches are distributed among these distances:
2 9 0.05
3 160 0.89
4 10 0.06
ACGTcount: A:0.31, C:0.08, G:0.01, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:32274205 original size:29 final size:30
Alignment explanation
Indices: 32274155--32274212 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
32274145 TTAAAATTTA
* *
32274155 AAAAATAAAGAAATTAATTTTC-ATGAAAT
1 AAAAATAAAGAAACTAAATTTCAATGAAAT
* *
32274184 AAAAATAGATAAACTAAATTTCAATGAAA
1 AAAAATAAAGAAACTAAATTTCAATGAAA
32274213 GATATAAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 18 0.75
30 6 0.25
ACGTcount: A:0.60, C:0.05, G:0.07, T:0.28
Consensus pattern (30 bp):
AAAAATAAAGAAACTAAATTTCAATGAAAT
Found at i:32275731 original size:2 final size:2
Alignment explanation
Indices: 32275724--32275749 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
32275714 CGACATGCTA
32275724 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
32275750 TTGAAAGAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:32279172 original size:19 final size:19
Alignment explanation
Indices: 32279140--32279180 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
32279130 AAAACGCATT
*
32279140 AAAATTTTTGAGGTTTATAA
1 AAAATATTTGAGGTTTA-AA
32279160 AAAATATTT-AGGTTTAAA
1 AAAATATTTGAGGTTTAAA
32279178 AAA
1 AAA
32279181 CACTAAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 5 0.25
19 7 0.35
20 8 0.40
ACGTcount: A:0.49, C:0.00, G:0.12, T:0.39
Consensus pattern (19 bp):
AAAATATTTGAGGTTTAAA
Found at i:32281018 original size:15 final size:15
Alignment explanation
Indices: 32280998--32281029 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
32280988 CATTTCACTA
*
32280998 TTATGTCTTTTGTAT
1 TTATGTCTTTTATAT
32281013 TTATGTCTTTTATAT
1 TTATGTCTTTTATAT
32281028 TT
1 TT
32281030 TTCATGCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.06, G:0.09, T:0.69
Consensus pattern (15 bp):
TTATGTCTTTTATAT
Found at i:32282309 original size:19 final size:20
Alignment explanation
Indices: 32282279--32282316 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
32282269 TAAATTGAGC
*
32282279 CCAAGAACCCAAAATCAAGA
1 CCAAGAACCCAAAAACAAGA
32282299 CCAAG-ACCCAAAAACAAG
1 CCAAGAACCCAAAAACAAG
32282317 TTGATCAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.55, C:0.32, G:0.11, T:0.03
Consensus pattern (20 bp):
CCAAGAACCCAAAAACAAGA
Found at i:32284262 original size:50 final size:50
Alignment explanation
Indices: 32284141--32284433 Score: 236
Period size: 50 Copynumber: 5.8 Consensus size: 50
32284131 ATGAGAACAT
* * *** *
32284141 ATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGATGGTTTTAGGTCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG--TTAGGTCAC
* * * **
32284193 GTGTGTAGTAGC-AAATGCAGGCTATTACGTGTACCAGATAGTTAGGTTGC
1 ATGTGTAGTA-CTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCAC
* * * * *
32284243 ATGTCTAGTACTAAGTGCAGGCTACTATGCGTACCCGAGA-ACTTCA-ATCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CC-AGATAGTT-AGGTCAC
* * * ** * * *
32284294 GTGTGTAGTACTAAATGCAGGTTACTACGTGTATTACATGGTTAGGTCAT
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCAC
* * *
32284344 GTGTGTAGTACTAAGTGCATGCTACTACGTGTACCAGATTGTT-GGTCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCAC
*
32284393 ATGTGTAGTACTAAGTGCAGGCTACTATGCT-TACCAGATAG
1 ATGTGTAGTACTAAGTGCAGGCTACTACG-TGTACCAGATAG
32284434 GTTCGGTTAC
Statistics
Matches: 187, Mismatches: 46, Indels: 19
0.74 0.18 0.08
Matches are distributed among these distances:
49 44 0.24
50 74 0.40
51 34 0.18
52 34 0.18
53 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (50 bp):
ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCAC
Found at i:32284323 original size:101 final size:100
Alignment explanation
Indices: 32284189--32284370 Score: 242
Period size: 101 Copynumber: 1.8 Consensus size: 100
32284179 TGGTTTTAGG
* *
32284189 TCACGTGTGTAGTAGCAAATGCAGGCTATTACGTGTACCAGATAGTTAGGTTGCA-TGTCTAGTA
1 TCACGTGTGTAGTAGCAAATGCAGGCTACTACGTGTACCACATAGTTAGG-T-CAGTGTCTAGTA
32284253 CTAAGTGCAGGCTACTATGCGTACCCGAGAACTTCAA
64 CTAAGTGCAGGCTACTATGCGTACCCGAGAACTTCAA
* ** * *
32284290 TCACGTGTGTAGTA-CTAAATGCAGGTTACTACGTGTATTACATGGTTAGGTCATGTGTGTAGTA
1 TCACGTGTGTAGTAGC-AAATGCAGGCTACTACGTGTACCACATAGTTAGGTCA-GTGTCTAGTA
*
32284354 CTAAGTGCATGCTACTA
64 CTAAGTGCAGGCTACTA
32284371 CGTGTACCAG
Statistics
Matches: 70, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
99 2 0.03
100 2 0.03
101 66 0.94
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.31
Consensus pattern (100 bp):
TCACGTGTGTAGTAGCAAATGCAGGCTACTACGTGTACCACATAGTTAGGTCAGTGTCTAGTACT
AAGTGCAGGCTACTATGCGTACCCGAGAACTTCAA
Found at i:32284379 original size:151 final size:151
Alignment explanation
Indices: 32284142--32284427 Score: 389
Period size: 151 Copynumber: 1.9 Consensus size: 151
32284132 TGAGAACATA
** * *
32284142 TGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGATGGTTTTAGGTCACGTGTGTAGTAGCAA
1 TGTGTAGTACTAAATGCAGGCTACTACGTGTTTAACATGG-TTTAGGTCACGTGTGTAGTAGCAA
* **
32284207 ATGCAGGCTATTACGTGTACCAGATAGTTAGGTTGCATGTCTAGTACTAAGTGCAGGCTACTATG
65 ATGCAGGCTACTACGTGTACCAGATAGTT-GGTCACATGTCTAGTACTAAGTGCAGGCTACTATG
32284272 CGTACCCGAGAACTTCAATCACG
129 CGTACCCGAGAACTTCAATCACG
* *
32284295 TGTGTAGTACTAAATGCAGGTTACTACGTGTATT-ACATGG-TTAGGTCATGTGTGTAGTA-CTA
1 TGTGTAGTACTAAATGCAGGCTACTACGTGT-TTAACATGGTTTAGGTCACGTGTGTAGTAGC-A
* * * *
32284357 AGTGCATGCTACTACGTGTACCAGATTGTTGGTCACATGTGTAGTACTAAGTGCAGGCTACTATG
64 AATGCAGGCTACTACGTGTACCAGATAGTTGGTCACATGTCTAGTACTAAGTGCAGGCTACTATG
*
32284422 CTTACC
129 CGTACC
32284428 AGATAGGTTC
Statistics
Matches: 117, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
150 38 0.32
151 45 0.38
153 32 0.27
154 2 0.02
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.33
Consensus pattern (151 bp):
TGTGTAGTACTAAATGCAGGCTACTACGTGTTTAACATGGTTTAGGTCACGTGTGTAGTAGCAAA
TGCAGGCTACTACGTGTACCAGATAGTTGGTCACATGTCTAGTACTAAGTGCAGGCTACTATGCG
TACCCGAGAACTTCAATCACG
Found at i:32289649 original size:48 final size:48
Alignment explanation
Indices: 32289590--32289682 Score: 159
Period size: 48 Copynumber: 1.9 Consensus size: 48
32289580 GGGTTATGTG
*
32289590 CGATCCTATGTAAGACCATGTCTGGGACACGACATTGGCATCGATCTA
1 CGATCCCATGTAAGACCATGTCTGGGACACGACATTGGCATCGATCTA
* *
32289638 CGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAT
1 CGATCCCATGTAAGACCATGTCTGGGACACGACATTGGCATCGAT
32289683 ATGTGATCCC
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (48 bp):
CGATCCCATGTAAGACCATGTCTGGGACACGACATTGGCATCGATCTA
Found at i:32289691 original size:48 final size:48
Alignment explanation
Indices: 32289590--32289694 Score: 156
Period size: 48 Copynumber: 2.2 Consensus size: 48
32289580 GGGTTATGTG
* *
32289590 CGATCCTATGTAAGACCATGTCTGGGACACGACATTGGCATCGATCTA
1 CGATCCCATGTAAGACCATGTCTGGGACACGACATTGGCATCGATATA
* * *
32289638 CGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
1 CGATCCCATGTAAGACCATGTCTGGGACACGACATTGGCATCGATATA
*
32289686 TGATCCCAT
1 CGATCCCAT
32289695 ATGGCATTGG
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 51 1.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (48 bp):
CGATCCCATGTAAGACCATGTCTGGGACACGACATTGGCATCGATATA
Found at i:32293687 original size:30 final size:30
Alignment explanation
Indices: 32293653--32293732 Score: 106
Period size: 30 Copynumber: 2.7 Consensus size: 30
32293643 AGCCAAAACT
*
32293653 ATCCATTTTCATAATTTGATGGTCGTCACC
1 ATCCATTTTCATAATTTGATGGTCATCACC
*** *
32293683 ATCCATTTTCATTGCTCGATGGTCATCACC
1 ATCCATTTTCATAATTTGATGGTCATCACC
*
32293713 ATCCCTTTTCATAATTTGAT
1 ATCCATTTTCATAATTTGAT
32293733 AGCCAAAGCT
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.23, C:0.25, G:0.11, T:0.41
Consensus pattern (30 bp):
ATCCATTTTCATAATTTGATGGTCATCACC
Found at i:32293820 original size:29 final size:30
Alignment explanation
Indices: 32293761--32293824 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 30
32293751 ACATAGATCG
* *
32293761 ATCCTTTTTCATAGTTCGATGGTTGTCACC
1 ATCCCTTTTCATAGTTCGATGGTCGTCACC
*
32293791 ATCCCTTTTCATTA-TT-GATGGTCGTTACC
1 ATCCCTTTTCA-TAGTTCGATGGTCGTCACC
32293820 ATCCC
1 ATCCC
32293825 ATTGCATAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
29 16 0.53
30 12 0.40
31 2 0.07
ACGTcount: A:0.17, C:0.27, G:0.14, T:0.42
Consensus pattern (30 bp):
ATCCCTTTTCATAGTTCGATGGTCGTCACC
Found at i:32293843 original size:29 final size:29
Alignment explanation
Indices: 32293788--32293843 Score: 67
Period size: 29 Copynumber: 1.9 Consensus size: 29
32293778 GATGGTTGTC
* * * * *
32293788 ACCATCCCTTTTCATTATTGATGGTCGTT
1 ACCATCCCATTGCATAATCGATAGTCGTT
32293817 ACCATCCCATTGCATAATCGATAGTCG
1 ACCATCCCATTGCATAATCGATAGTCG
32293844 AAGCTATCCC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 22 1.00
ACGTcount: A:0.23, C:0.27, G:0.14, T:0.36
Consensus pattern (29 bp):
ACCATCCCATTGCATAATCGATAGTCGTT
Found at i:32293852 original size:29 final size:29
Alignment explanation
Indices: 32293820--32293882 Score: 81
Period size: 29 Copynumber: 2.2 Consensus size: 29
32293810 GGTCGTTACC
*
32293820 ATCCCATTGCATAATCGATAGTCGAAGCT
1 ATCCCATTGCATAATCGATAGCCGAAGCT
* * * *
32293849 ATCCCTTTTCGTATTCGATAGCCGAAGCT
1 ATCCCATTGCATAATCGATAGCCGAAGCT
32293878 ATCCC
1 ATCCC
32293883 TTTTCATTTG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (29 bp):
ATCCCATTGCATAATCGATAGCCGAAGCT
Found at i:32300259 original size:39 final size:40
Alignment explanation
Indices: 32300164--32300347 Score: 177
Period size: 40 Copynumber: 4.7 Consensus size: 40
32300154 TTGAATGCTG
*
32300164 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
32300202 ATCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
32300243 TCTGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
32300282 TCCGGGTTAAGTCCCGAAGGCATTTGTGCG-GATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
32300321 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
32300348 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 13, Indels: 17
0.80 0.08 0.11
Matches are distributed among these distances:
39 53 0.43
40 58 0.47
41 11 0.09
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:32300369 original size:79 final size:79
Alignment explanation
Indices: 32300216--32300370 Score: 183
Period size: 79 Copynumber: 2.0 Consensus size: 79
32300206 GGACTAAGAT
* * ** *
32300216 CCGAAGGCATTTGTGCGAGATACTAATTCTGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
32300281 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
*
32300295 CCGAAGGCATTTGTGCG-GATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
*
32300357 CTATATCC-GGTTAA
62 CTAAATCCGGGTTAA
32300371 ATTTCGAAGG
Statistics
Matches: 65, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
78 4 0.06
79 36 0.55
80 25 0.38
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAGTC
Found at i:32304291 original size:47 final size:47
Alignment explanation
Indices: 32304220--32304624 Score: 675
Period size: 47 Copynumber: 8.6 Consensus size: 47
32304210 CCCTTCGGGA
* * * * * *
32304220 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
32304267 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32304314 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32304361 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32304408 CTTATCACATATGTACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32304455 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32304502 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32304551 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32304598 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
32304625 TATTCAAATA
Statistics
Matches: 340, Mismatches: 16, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
47 295 0.87
49 45 0.13
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32304298 original size:25 final size:25
Alignment explanation
Indices: 32304270--32304348 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
32304260 ACTCGGCCCT
32304270 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * * *
32304295 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
32304317 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
32304342 ATCACAT
1 ATCACAT
32304349 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:32310138 original size:3 final size:3
Alignment explanation
Indices: 32310130--32310188 Score: 100
Period size: 3 Copynumber: 19.7 Consensus size: 3
32310120 ACTCTATTGT
* *
32310130 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TCA TTA TTA TTA TTA ATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
32310178 TTA TTA TTA TT
1 TTA TTA TTA TT
32310189 TTTGTAGCCT
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:32312267 original size:43 final size:43
Alignment explanation
Indices: 32312220--32312305 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
32312210 CATAACATCA
*
32312220 CGTTTTCGCAACATTGTTGAAATGCTTCCGCAACAAACATGTT
1 CGTTTTCGCAACATTGTTCAAATGCTTCCGCAACAAACATGTT
32312263 CGTTTTCGCAACATTGTTCAAATGCTTCCGCAACAAACATGTT
1 CGTTTTCGCAACATTGTTCAAATGCTTCCGCAACAAACATGTT
32312306 TTTAAAAGTA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.33
Consensus pattern (43 bp):
CGTTTTCGCAACATTGTTCAAATGCTTCCGCAACAAACATGTT
Found at i:32312363 original size:34 final size:34
Alignment explanation
Indices: 32312315--32312382 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
32312305 TTTTAAAAGT
32312315 AAGGATGGTTTAAAATGGTTAACAAATAATTAAG
1 AAGGATGGTTTAAAATGGTTAACAAATAATTAAG
*
32312349 AAGGCTGGTTTAAAATGGTTAACAAATAATTAAG
1 AAGGATGGTTTAAAATGGTTAACAAATAATTAAG
32312383 TTGACTTTTG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.46, C:0.04, G:0.21, T:0.29
Consensus pattern (34 bp):
AAGGATGGTTTAAAATGGTTAACAAATAATTAAG
Found at i:32315865 original size:19 final size:19
Alignment explanation
Indices: 32315841--32315878 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
32315831 TCTACAACTT
32315841 AAGGAATAATTTAATTGAG
1 AAGGAATAATTTAATTGAG
32315860 AAGGAATAATTTAATTGAG
1 AAGGAATAATTTAATTGAG
32315879 TCAATTTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.21, T:0.32
Consensus pattern (19 bp):
AAGGAATAATTTAATTGAG
Found at i:32316974 original size:17 final size:17
Alignment explanation
Indices: 32316952--32317011 Score: 57
Period size: 17 Copynumber: 3.4 Consensus size: 17
32316942 AATTCAAAGC
32316952 AAAGAATGGGTTGGAAA
1 AAAGAATGGGTTGGAAA
* ** *
32316969 AAAGAAAGGGAAGAACAA
1 AAAGAATGGGTTGGA-AA
32316987 AGTAAGAATGGGTTGGAAA
1 A--AAGAATGGGTTGGAAA
32317006 AAAGAA
1 AAAGAA
32317012 AGGGAAGAAC
Statistics
Matches: 32, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
17 16 0.50
18 3 0.09
19 3 0.09
20 10 0.31
ACGTcount: A:0.55, C:0.02, G:0.32, T:0.12
Consensus pattern (17 bp):
AAAGAATGGGTTGGAAA
Found at i:32316976 original size:21 final size:21
Alignment explanation
Indices: 32316947--32317013 Score: 54
Period size: 21 Copynumber: 3.4 Consensus size: 21
32316937 CGAAGAATTC
32316947 AAAGCAAAGAATGGGTTGGAAA
1 AAAG-AAAGAATGGGTTGGAAA
** *
32316969 AAAG--A-AA-GGG-AAGAAC
1 AAAGAAAGAATGGGTTGGAAA
*
32316985 AAAGTAAGAATGGGTTGGAAA
1 AAAGAAAGAATGGGTTGGAAA
32317006 AAAGAAAG
1 AAAGAAAG
32317014 GGAAGAACAA
Statistics
Matches: 33, Mismatches: 7, Indels: 11
0.65 0.14 0.22
Matches are distributed among these distances:
16 7 0.21
17 3 0.09
18 3 0.09
19 3 0.09
20 3 0.09
21 10 0.30
22 4 0.12
ACGTcount: A:0.55, C:0.03, G:0.31, T:0.10
Consensus pattern (21 bp):
AAAGAAAGAATGGGTTGGAAA
Found at i:32316988 original size:33 final size:33
Alignment explanation
Indices: 32316951--32317034 Score: 114
Period size: 37 Copynumber: 2.4 Consensus size: 33
32316941 GAATTCAAAG
32316951 CAAAGAATGGGTTGGAAAAAAGAAAGGGAAGAA
1 CAAAGAATGGGTTGGAAAAAAGAAAGGGAAGAA
32316984 CAAAGTAAGAATGGGTTGGAAAAAAGAAAGGGAAGAA
1 C--A--AAGAATGGGTTGGAAAAAAGAAAGGGAAGAA
* *
32317021 CAAAGTATGTGTTG
1 CAAAGAATGGGTTG
32317035 ATTCAAAAGA
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
33 11 0.24
35 2 0.04
37 32 0.71
ACGTcount: A:0.50, C:0.04, G:0.32, T:0.14
Consensus pattern (33 bp):
CAAAGAATGGGTTGGAAAAAAGAAAGGGAAGAA
Found at i:32316995 original size:37 final size:37
Alignment explanation
Indices: 32316953--32317027 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
32316943 ATTCAAAGCA
32316953 AAGAATGGGTTGGAAAAAAGAAAGGGAAGAACAAAGT
1 AAGAATGGGTTGGAAAAAAGAAAGGGAAGAACAAAGT
32316990 AAGAATGGGTTGGAAAAAAGAAAGGGAAGAACAAAGT
1 AAGAATGGGTTGGAAAAAAGAAAGGGAAGAACAAAGT
32317027 A
1 A
32317028 TGTGTTGATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.55, C:0.03, G:0.32, T:0.11
Consensus pattern (37 bp):
AAGAATGGGTTGGAAAAAAGAAAGGGAAGAACAAAGT
Found at i:32325667 original size:26 final size:25
Alignment explanation
Indices: 32325625--32325685 Score: 77
Period size: 26 Copynumber: 2.4 Consensus size: 25
32325615 ATACATAAAT
* *
32325625 TATATTATATGCGTGGGTCTTACTA
1 TATAATATATGCATGGGTCTTACTA
* *
32325650 TGTACATATATGCATGGGTCTTATTA
1 TATA-ATATATGCATGGGTCTTACTA
32325676 TATAATATAT
1 TATAATATAT
32325686 ATAATTATGG
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
25 9 0.30
26 21 0.70
ACGTcount: A:0.30, C:0.10, G:0.16, T:0.44
Consensus pattern (25 bp):
TATAATATATGCATGGGTCTTACTA
Found at i:32326184 original size:83 final size:83
Alignment explanation
Indices: 32326044--32326219 Score: 334
Period size: 83 Copynumber: 2.1 Consensus size: 83
32326034 GCACCCTCGT
*
32326044 AACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTT
1 AACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCATCGATTTGTTCCTT
32326109 GTAAGCACAAGGATGCCA
66 GTAAGCACAAGGATGCCA
*
32326127 AACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCATTGATTTGTTCCTT
1 AACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCATCGATTTGTTCCTT
32326192 GTAAGCACAAGGATGCCA
66 GTAAGCACAAGGATGCCA
32326210 AACCATCTTG
1 AACCATCTTG
32326220 GATCTGCTTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
83 91 1.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (83 bp):
AACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCATCGATTTGTTCCTT
GTAAGCACAAGGATGCCA
Found at i:32326858 original size:119 final size:119
Alignment explanation
Indices: 32326143--32326855 Score: 1183
Period size: 119 Copynumber: 6.0 Consensus size: 119
32326133 CTTGAGTCTG
* * * * * * * * *
32326143 TTTGAGAACATTTGAGAGTCATATCTGCAATGTCATTGATTTGTTCCTTGTAAGCACAAGGATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
*
32326208 CAAACCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
* * *
32326262 TTTGAGAACGTCTAAGAGTCAAATCTGCTATGTCCTTGATTTGTTTCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
* * * *
32326327 CAAATCATCTTGGATCTGCTTTAGTATAAACATCTAAAGGCTAGATCTGTTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
32326381 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
*
32326446 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGTTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
*
32326500 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGAGTTGTTCCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
32326565 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
* * *
32326619 TTTGAGAACGTCTGAGAGTCAAATCTGTTATGTCCTCGATTTGTTCCTTGTAAACAAAAGAATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
** *
32326684 CAAATCATCTTTAATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATC
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
*
32326738 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
*
32326803 CAAATCATCTTGGATCTGCTTTAGTATAAACATCTGAAGGTTAGATCTGCTAT
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTAT
32326856 CTTCAATCTG
Statistics
Matches: 559, Mismatches: 35, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
119 559 1.00
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (119 bp):
TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
Found at i:32326895 original size:44 final size:44
Alignment explanation
Indices: 32326847--32327026 Score: 168
Period size: 44 Copynumber: 4.1 Consensus size: 44
32326837 TGAAGGTTAG
*
32326847 ATCTGCTATCTTCAATCTGTTCCCTATAAACACAAAGATGCCAA
1 ATCTGCTATCTTCAATCTGTTCCCTATAAACACAAGGATGCCAA
* *
32326891 ATCTGCTATCTTCAA-CTTGTTCCCTATAAACACAGGGATGCCAT
1 ATCTGCTATCTTCAATC-TGTTCCCTATAAACACAAGGATGCCAA
* ** * * * * *
32326935 GT-TGAAATCTTCAATCTGCTTCGCTGTAAGCAC-AGGAATGTCAG
1 ATCTGCTATCTTCAATCTG-TTCCCTATAAACACAAGG-ATGCCAA
* * * * *
32326979 ATCTACTATCTTCGACCTGTTCCCTATAAACATAGGGATGCCAA
1 ATCTGCTATCTTCAATCTGTTCCCTATAAACACAAGGATGCCAA
32327023 ATCT
1 ATCT
32327027 TGTTTCTTTG
Statistics
Matches: 105, Mismatches: 25, Indels: 12
0.74 0.18 0.08
Matches are distributed among these distances:
43 15 0.14
44 77 0.73
45 13 0.12
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (44 bp):
ATCTGCTATCTTCAATCTGTTCCCTATAAACACAAGGATGCCAA
Found at i:32334261 original size:18 final size:18
Alignment explanation
Indices: 32334225--32334323 Score: 150
Period size: 17 Copynumber: 5.6 Consensus size: 18
32334215 AATCATATCT
32334225 TCTAAGATTGTATATCATA
1 TCTAAGATTGTA-ATCATA
32334244 TCTAAGATT-TCAATCATA
1 TCTAAGATTGT-AATCATA
32334262 TCTAAGATTGT-ATCATA
1 TCTAAGATTGTAATCATA
*
32334279 TCTAAGATTGCAATCATA
1 TCTAAGATTGTAATCATA
32334297 TCTAAGATTGT-ATCATA
1 TCTAAGATTGTAATCATA
32334314 TCTAAGATTG
1 TCTAAGATTG
32334324 CATATCATTG
Statistics
Matches: 75, Mismatches: 2, Indels: 8
0.88 0.02 0.09
Matches are distributed among these distances:
17 32 0.43
18 32 0.43
19 11 0.15
ACGTcount: A:0.36, C:0.13, G:0.11, T:0.39
Consensus pattern (18 bp):
TCTAAGATTGTAATCATA
Found at i:32334283 original size:35 final size:35
Alignment explanation
Indices: 32334225--32334331 Score: 178
Period size: 35 Copynumber: 3.0 Consensus size: 35
32334215 AATCATATCT
*
32334225 TCTAAGATTGTATATCATATCTAAGATTTCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
32334262 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
32334297 TCTAAGATTGTATCATATCTAAGATTGCATATCAT
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCAT
32334332 TGAAGATTAT
Statistics
Matches: 68, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
35 53 0.78
36 5 0.07
37 10 0.15
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.39
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:32337003 original size:20 final size:19
Alignment explanation
Indices: 32336980--32337020 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
32336970 ATTTTTTGTT
* *
32336980 TTAGGTTAGGGATTTTTAGG
1 TTAGGTTAAGG-TTATTAGG
32337000 TTAGGTTAAGGTTATTAGG
1 TTAGGTTAAGGTTATTAGG
32337019 TT
1 TT
32337021 TGGGTTAGTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.22, C:0.00, G:0.32, T:0.46
Consensus pattern (19 bp):
TTAGGTTAAGGTTATTAGG
Found at i:32351795 original size:45 final size:44
Alignment explanation
Indices: 32351714--32351826 Score: 133
Period size: 45 Copynumber: 2.5 Consensus size: 44
32351704 CAGCATTTCC
*
32351714 CCTGTTAGGCTCAAGGCCCG-ATATCAGTTCACCGGCATTATAG
1 CCTGCTAGGCTCAAGGCCCGAATATCAGTTCACCGGCATTATAG
32351757 CCTGCTAGGCTCGAAGGCCCGAATAGT-A-TCTCACCGGCATTATAG
1 CCTGCTAGGCTC-AAGGCCCGAATA-TCAGT-TCACCGGCATTATAG
** *
32351802 TTTGCTAAGCTCAAAGGCCCGAATA
1 CCTGCTAGGCTC-AAGGCCCGAATA
32351827 ATCAAGTCAA
Statistics
Matches: 61, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
43 11 0.18
44 9 0.15
45 40 0.66
46 1 0.02
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (44 bp):
CCTGCTAGGCTCAAGGCCCGAATATCAGTTCACCGGCATTATAG
Found at i:32352205 original size:43 final size:43
Alignment explanation
Indices: 32352158--32352267 Score: 175
Period size: 43 Copynumber: 2.6 Consensus size: 43
32352148 GGCATTATGT
* *
32352158 CTGCTAGGCACGAAGGCCCAAATACATATCACCGGCACGAAGC
1 CTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGC
* * *
32352201 CTGCTAGGCATGAAGGCCTGAATACACATCACCGGCACTAAGC
1 CTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGC
32352244 CTGCTAGGCACGAAGGCCCGAATA
1 CTGCTAGGCACGAAGGCCCGAATA
32352268 TAATACCAGC
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.31, C:0.31, G:0.25, T:0.14
Consensus pattern (43 bp):
CTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGC
Found at i:32352308 original size:38 final size:38
Alignment explanation
Indices: 32352260--32352343 Score: 123
Period size: 38 Copynumber: 2.2 Consensus size: 38
32352250 GGCACGAAGG
* * *
32352260 CCCGAATATAATACCAGCACTAGGCCTACGGGATTTAT
1 CCCGAATATAATACCAGCACAAAGCCTACGGGATTTAA
* *
32352298 CCCGGATATAATACCAGCACAAAGCCTGCGGGATTTAA
1 CCCGAATATAATACCAGCACAAAGCCTACGGGATTTAA
32352336 CCCGAATA
1 CCCGAATA
32352344 CACATTAAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.20
Consensus pattern (38 bp):
CCCGAATATAATACCAGCACAAAGCCTACGGGATTTAA
Found at i:32359750 original size:27 final size:27
Alignment explanation
Indices: 32359719--32359896 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
32359709 TAAATTGTAC
32359719 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
32359746 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32359772 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
32359800 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
32359828 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32359855 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
32359882 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
32359897 GACTCGATAT
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 108 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:32359833 original size:82 final size:81
Alignment explanation
Indices: 32359720--32359875 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
32359710 AAATTGTACA
*
32359720 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
32359784 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
32359801 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
32359866 TGCGAGTTGA
65 TGCGAATTGA
32359876 TTATATAGCA
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.22
82 52 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:32359887 original size:82 final size:81
Alignment explanation
Indices: 32359716--32359896 Score: 238
Period size: 82 Copynumber: 2.2 Consensus size: 81
32359706 GATTAAATTG
*
32359716 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
32359781 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
32359797 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
32359861 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
32359879 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
32359897 GACTCGATAT
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 18 0.21
82 67 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:32374054 original size:71 final size:67
Alignment explanation
Indices: 32373914--32374054 Score: 169
Period size: 67 Copynumber: 2.0 Consensus size: 67
32373904 GAGGAAGCGC
* * * *
32373914 TCTGGCAGCCTCACTGCAATCTGGTGGCCTTGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAACCTCACTACAATCTGGTGGCCTTGCCACATATATCTGTTCTGGTGACTTAGCCACAA
32373979 TA
66 TA
*
32373981 TCTGGCAACCTCGCTACAATCTGGTGG-CTTCGCCACATATATATATCTGTTCTGGTGGAC-TAG
1 TCTGGCAACCTCACTACAATCTGGTGGCCTT-GCCAC----ATATATCTGTTCTGGT-GACTTAG
32374044 CCACAATA
60 CCACAATA
32374052 TCT
1 TCT
32374055 ATATCTGATG
Statistics
Matches: 63, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
66 3 0.05
67 29 0.46
71 28 0.44
72 3 0.05
ACGTcount: A:0.21, C:0.28, G:0.20, T:0.31
Consensus pattern (67 bp):
TCTGGCAACCTCACTACAATCTGGTGGCCTTGCCACATATATCTGTTCTGGTGACTTAGCCACAA
TA
Found at i:32374182 original size:14 final size:14
Alignment explanation
Indices: 32374163--32374195 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
32374153 GTCTAAAATA
32374163 TGTGATTATGAATG
1 TGTGATTATGAATG
32374177 TGTGATTATGAATG
1 TGTGATTATGAATG
32374191 TGTGA
1 TGTGA
32374196 AAGTTTTAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.30, T:0.42
Consensus pattern (14 bp):
TGTGATTATGAATG
Found at i:32375875 original size:40 final size:40
Alignment explanation
Indices: 32375820--32376037 Score: 280
Period size: 40 Copynumber: 5.5 Consensus size: 40
32375810 TGGATGATAA
* * * * *
32375820 CCGGGCTAAGTCTCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-TAT
* *
32375860 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
32375900 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
32375940 CTGGGCTACGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
32375980 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATAT
* *
32376020 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
32376038 TACGTGGCTT
Statistics
Matches: 163, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 16 0.10
40 147 0.90
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:32383661 original size:40 final size:40
Alignment explanation
Indices: 32383603--32383766 Score: 224
Period size: 40 Copynumber: 4.1 Consensus size: 40
32383593 TGGATGATAA
* *
32383603 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
32383643 CCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
32383683 CCTGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
32383723 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
32383763 CCGG
1 CCGG
32383767 TTAAATCTCG
Statistics
Matches: 113, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
39 3 0.03
40 110 0.97
ACGTcount: A:0.21, C:0.24, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:32392626 original size:44 final size:45
Alignment explanation
Indices: 32392576--32392663 Score: 124
Period size: 45 Copynumber: 2.0 Consensus size: 45
32392566 GTTTTAAACG
* *
32392576 TGGTCTTACTCGTACA-CATATATCAGAATCACATATCGATGCCA
1 TGGTCTTACTCGCACATCACATATCAGAATCACATATCGATGCCA
* **
32392620 TGGTCTTACTCGCACATCACATGTTGGAATCACATATCGATGCC
1 TGGTCTTACTCGCACATCACATATCAGAATCACATATCGATGCC
32392664 TCATATACAT
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
44 15 0.39
45 23 0.61
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (45 bp):
TGGTCTTACTCGCACATCACATATCAGAATCACATATCGATGCCA
Found at i:32398712 original size:76 final size:76
Alignment explanation
Indices: 32398586--32398737 Score: 268
Period size: 76 Copynumber: 2.0 Consensus size: 76
32398576 TTAAGTAAGT
*
32398586 TGTTTTAACAATAGAATTAATTTATGATAATCTAAACCCACATAAATAAAACCTTATCACCTATT
1 TGTTTTAACAACAGAATTAATTTATGATAATCTAAACCCACATAAATAAAACCTTATCACCTATT
32398651 GTCTAGGTTCG
66 GTCTAGGTTCG
* *
32398662 TGTTTTAACAACAGAATTAATTTATGATAATCTAAACTCACATAAATAAAACCTTATCACTTATT
1 TGTTTTAACAACAGAATTAATTTATGATAATCTAAACCCACATAAATAAAACCTTATCACCTATT
*
32398727 TTCTAGGTTCG
66 GTCTAGGTTCG
32398738 CCGATATCTG
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
76 72 1.00
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.37
Consensus pattern (76 bp):
TGTTTTAACAACAGAATTAATTTATGATAATCTAAACCCACATAAATAAAACCTTATCACCTATT
GTCTAGGTTCG
Found at i:32400274 original size:27 final size:27
Alignment explanation
Indices: 32400235--32400302 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 27
32400225 TGATATTCTT
*
32400235 TTGGTGAACCCTCAGTTCACCGATACA
1 TTGGTGAATCCTCAGTTCACCGATACA
**
32400262 TTGGTGAATCCTCAGTTTGCCGATACA
1 TTGGTGAATCCTCAGTTCACCGATACA
*
32400289 TTGGCGAATCCTCA
1 TTGGTGAATCCTCA
32400303 CTTGTGAGGC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (27 bp):
TTGGTGAATCCTCAGTTCACCGATACA
Found at i:32402908 original size:79 final size:78
Alignment explanation
Indices: 32402808--32403023 Score: 233
Period size: 79 Copynumber: 2.7 Consensus size: 78
32402798 GCTCCTCGTT
*
32402808 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCAG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCAG
*
32402873 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* * * *
32402888 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGTACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAACCCAG
*
32402951 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* * * * *
32402966 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTA
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTA
32403024 GCCCGGACAT
Statistics
Matches: 115, Mismatches: 14, Indels: 15
0.80 0.10 0.10
Matches are distributed among these distances:
78 46 0.40
79 49 0.43
80 19 0.17
81 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.27
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCAGAA
TTAGTAACTCGCA
Found at i:32402930 original size:39 final size:40
Alignment explanation
Indices: 32402808--32403030 Score: 248
Period size: 39 Copynumber: 5.7 Consensus size: 40
32402798 GCTCCTCGTT
* *
32402808 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * * *
32402848 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
*
32402888 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
32402927 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
32402966 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
32403007 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
32403031 CATCATTCAA
Statistics
Matches: 162, Mismatches: 13, Indels: 17
0.84 0.07 0.09
Matches are distributed among these distances:
38 2 0.01
39 86 0.53
40 63 0.39
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:32405598 original size:60 final size:61
Alignment explanation
Indices: 32405504--32405635 Score: 230
Period size: 60 Copynumber: 2.2 Consensus size: 61
32405494 AATAAAAGAT
*
32405504 ACAAATTCAAATTCTGAGAATTAATGAAACCTAATTTCACTAAGATCAAACCTAGAGGAGA
1 ACAAATTCAAATTCTGAGAATTAATGAAACCTAATTTCACTAAGATCAAACCTAAAGGAGA
**
32405565 ACAAATT-AAATTCTGAGTTTTAATGAAACCTAATTTCACTAAGATCAAACCTAAAGGAGA
1 ACAAATTCAAATTCTGAGAATTAATGAAACCTAATTTCACTAAGATCAAACCTAAAGGAGA
32405625 ACAAATTCAAA
1 ACAAATTCAAA
32405636 AGCTTTAAAG
Statistics
Matches: 67, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
60 57 0.85
61 10 0.15
ACGTcount: A:0.47, C:0.16, G:0.11, T:0.26
Consensus pattern (61 bp):
ACAAATTCAAATTCTGAGAATTAATGAAACCTAATTTCACTAAGATCAAACCTAAAGGAGA
Found at i:32406601 original size:17 final size:17
Alignment explanation
Indices: 32406581--32406614 Score: 59
Period size: 17 Copynumber: 1.9 Consensus size: 17
32406571 TAGAGAAATT
32406581 AAAACTTAAATTTAAAAA
1 AAAAC-TAAATTTAAAAA
32406599 AAAACTAAATTTAAAA
1 AAAACTAAATTTAAAA
32406615 TGTATGGAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (17 bp):
AAAACTAAATTTAAAAA
Found at i:32407347 original size:7 final size:7
Alignment explanation
Indices: 32407335--32407363 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
32407325 TAACAAGATG
32407335 AAAATAA
1 AAAATAA
32407342 AAAATAA
1 AAAATAA
32407349 AAAATAA
1 AAAATAA
32407356 AAAATAA
1 AAAATAA
32407363 A
1 A
32407364 CCTTGATCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (7 bp):
AAAATAA
Found at i:32407652 original size:43 final size:43
Alignment explanation
Indices: 32407597--32407681 Score: 152
Period size: 43 Copynumber: 2.0 Consensus size: 43
32407587 TGGATATCAC
*
32407597 ATATATAATAAGAATAATTACATATTATTTTTTACTATCATAT
1 ATATATAATAAGAATAATTACATATTAGTTTTTACTATCATAT
*
32407640 ATATATAGTAAGAATAATTACATATTAGTTTTTACTATCATA
1 ATATATAATAAGAATAATTACATATTAGTTTTTACTATCATA
32407682 AAAAGTTGGT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.44, C:0.07, G:0.05, T:0.45
Consensus pattern (43 bp):
ATATATAATAAGAATAATTACATATTAGTTTTTACTATCATAT
Found at i:32409260 original size:22 final size:21
Alignment explanation
Indices: 32409213--32409260 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
32409203 TTGATTTACC
** *
32409213 AATATTTTACATTAGTATTAA
1 AATATTTTACATTAAAATAAA
*
32409234 TATATTTTACAATTAAAATAAA
1 AATATTTTAC-ATTAAAATAAA
32409256 AATAT
1 AATAT
32409261 ATTATTACTA
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (21 bp):
AATATTTTACATTAAAATAAA
Found at i:32410726 original size:143 final size:143
Alignment explanation
Indices: 32410463--32410747 Score: 498
Period size: 143 Copynumber: 2.0 Consensus size: 143
32410453 GAGAGTTTGA
* *
32410463 GGGGGCCTTTAATATAGCAATTGGTGACCTAGCTCGTAAAAATGAAGCCTTGGAGGCCTTGGTGG
1 GGGGACCTTTAATATAGCAATTGGTGACCTAGCTCGTAAAAATGAAACCTTGGAGGCCTTGGTGG
* * *
32410528 AGGCCATACGTAATGAGATTATTGAGCTGAAGGTGAAGCTCGCGAGACTTAAATCCATGGAAGGT
66 AAGCCATACGCAATGAGATTATTGAGCTGAAGGCGAAGCTCGCGAGACTTAAATCCATGGAAGGT
32410593 ATGTGTGGTATCT
131 ATGTGTGGTATCT
32410606 GGGGACCTTTAATATAGCAATTGGTGACCTAGCTCGTAAAAATGAAACCTTGGAGGCCTTGGTGG
1 GGGGACCTTTAATATAGCAATTGGTGACCTAGCTCGTAAAAATGAAACCTTGGAGGCCTTGGTGG
* * *
32410671 AAGCCATAGGCAATGAGATTGTTGAGCTGAAGGCGAAGCTTGCGAGACTTAAATCCATGGAAGGT
66 AAGCCATACGCAATGAGATTATTGAGCTGAAGGCGAAGCTCGCGAGACTTAAATCCATGGAAGGT
32410736 ATGTGTGGTATC
131 ATGTGTGGTATC
32410748 CCATACTTTC
Statistics
Matches: 134, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
143 134 1.00
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (143 bp):
GGGGACCTTTAATATAGCAATTGGTGACCTAGCTCGTAAAAATGAAACCTTGGAGGCCTTGGTGG
AAGCCATACGCAATGAGATTATTGAGCTGAAGGCGAAGCTCGCGAGACTTAAATCCATGGAAGGT
ATGTGTGGTATCT
Found at i:32412564 original size:42 final size:43
Alignment explanation
Indices: 32412488--32412598 Score: 118
Period size: 43 Copynumber: 2.6 Consensus size: 43
32412478 ATTGACTTGA
* * * *
32412488 GATTTACATGTAATACCATGTCTGGGACATTGGCATC-GTATAT
1 GATTT-CATGTAAGACCCTGTCTGGGACAGTGGCATCAATATAT
* * *
32412531 GATTTCATGGAAGACCCTGTCTGGGATAGTGGCATCAATATTT
1 GATTTCATGTAAGACCCTGTCTGGGACAGTGGCATCAATATAT
*
32412574 GATTACATGTAAGACCAC-GTCTGGG
1 GATTTCATGTAAGACC-CTGTCTGGG
32412599 GCGTTGGCAT
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
42 26 0.46
43 30 0.53
44 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (43 bp):
GATTTCATGTAAGACCCTGTCTGGGACAGTGGCATCAATATAT
Found at i:32412596 original size:43 final size:42
Alignment explanation
Indices: 32412491--32412598 Score: 119
Period size: 42 Copynumber: 2.5 Consensus size: 42
32412481 GACTTGAGAT
* * * *
32412491 TTACATGTAATACCATGTCTGGGACATTGGCATCGTATATGA
1 TTACATGTAAGACCACGTCTGGGACAGTGGCATCATATATGA
* * * *
32412533 TTTCATGGAAGACC-CTGTCTGGGATAGTGGCATCAATATTTGA
1 TTACATGTAAGACCAC-GTCTGGGACAGTGGCATC-ATATATGA
32412576 TTACATGTAAGACCACGTCTGGG
1 TTACATGTAAGACCACGTCTGGG
32412599 GCGTTGGCAT
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
42 27 0.51
43 25 0.47
44 1 0.02
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (42 bp):
TTACATGTAAGACCACGTCTGGGACAGTGGCATCATATATGA
Found at i:32412607 original size:43 final size:42
Alignment explanation
Indices: 32412452--32412608 Score: 115
Period size: 43 Copynumber: 3.7 Consensus size: 42
32412442 TGTGATATCG
* * *
32412452 TGTAAGATCACATCTGGGACGTTGGCATTGACT-TGA-GATTTACA
1 TGTAAGACCACGTCTGGGACGTTGGCA-TCA-TAT-ATGA-TTACA
* * * * *
32412496 TGTAATACCATGTCTGGGACATTGGCATCGTATATGATTTCA
1 TGTAAGACCACGTCTGGGACGTTGGCATCATATATGATTACA
* * *
32412538 TGGAAGACC-CTGTCTGGGATAG-TGGCATCAATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGA-CGTTGGCATC-ATATATGATTACA
*
32412581 TGTAAGACCACGTCTGGGGCGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
32412609 TGTACGAGCT
Statistics
Matches: 87, Mismatches: 19, Indels: 15
0.72 0.16 0.12
Matches are distributed among these distances:
42 29 0.33
43 35 0.40
44 23 0.26
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCATATATGATTACA
Found at i:32418740 original size:44 final size:44
Alignment explanation
Indices: 32418686--32418773 Score: 142
Period size: 44 Copynumber: 2.0 Consensus size: 44
32418676 TCCGATATGT
*
32418686 GATTTAGTGTAAGACCATATCTGGGACATTGGCATTG-ATTTGA
1 GATTTAGTGTAAGACCATATCTGGGACATTGGCATCGTATTTGA
*
32418729 GATTTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATTTGA
1 GATTTA-GTGTAAGACCATATCTGGGACATTGGCATCGTATTTGA
32418774 TGTAACACCT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
43 6 0.15
44 29 0.71
45 6 0.15
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.34
Consensus pattern (44 bp):
GATTTAGTGTAAGACCATATCTGGGACATTGGCATCGTATTTGA
Found at i:32420812 original size:14 final size:14
Alignment explanation
Indices: 32420788--32420820 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
32420778 CCCCTGCTTC
32420788 GTTTCTGTTTCTTTT
1 GTTTCTGTTTC-TTT
32420803 GTTT-TGTTTCTTT
1 GTTTCTGTTTCTTT
32420816 GTTTC
1 GTTTC
32420821 CTTAATTCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 7 0.41
14 6 0.35
15 4 0.24
ACGTcount: A:0.00, C:0.12, G:0.15, T:0.73
Consensus pattern (14 bp):
GTTTCTGTTTCTTT
Found at i:32421214 original size:21 final size:20
Alignment explanation
Indices: 32421149--32421217 Score: 70
Period size: 21 Copynumber: 3.4 Consensus size: 20
32421139 AATAATGCTA
32421149 ATAATAATCTAATATAAAACC
1 ATAATAAT-TAATATAAAACC
* **
32421170 ATAAT-GTTAAT-TAATAATT
1 ATAATAATTAATATAA-AACC
32421189 ATAATAATTAAATATAAAACC
1 ATAATAATT-AATATAAAACC
32421210 ATAATAAT
1 ATAATAAT
32421218 AATCATTATA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
18 3 0.08
19 11 0.29
20 3 0.08
21 18 0.47
22 3 0.08
ACGTcount: A:0.57, C:0.07, G:0.01, T:0.35
Consensus pattern (20 bp):
ATAATAATTAATATAAAACC
Found at i:32421217 original size:30 final size:30
Alignment explanation
Indices: 32421181--32421239 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
32421171 TAATGTTAAT
*
32421181 TAATAATTATAATAATTAA-ATATAAAACCA
1 TAATAATAATAATAA-TAATATATAAAACCA
* *
32421211 TAATAATAATCATTATAATATATAAAACC
1 TAATAATAATAATAATAATATATAAAACC
32421240 TAAAAAAATC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 3 0.12
30 22 0.88
ACGTcount: A:0.58, C:0.08, G:0.00, T:0.34
Consensus pattern (30 bp):
TAATAATAATAATAATAATATATAAAACCA
Found at i:32434187 original size:19 final size:19
Alignment explanation
Indices: 32434165--32434203 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
32434155 ACGAACTTAC
32434165 TAAGCTGTAAAGCTTACTT
1 TAAGCTGTAAAGCTTACTT
32434184 TAAGCTGTAAAGCTTACTT
1 TAAGCTGTAAAGCTTACTT
32434203 T
1 T
32434204 GTGTTATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (19 bp):
TAAGCTGTAAAGCTTACTT
Found at i:32440361 original size:43 final size:43
Alignment explanation
Indices: 32440300--32440395 Score: 174
Period size: 43 Copynumber: 2.2 Consensus size: 43
32440290 CAACCCTATA
*
32440300 TCACACGGGCATGTCTACTAGCTGTGTGAGGCACACAGTCTGT
1 TCACACGGGCATGTCTACTAGCCGTGTGAGGCACACAGTCTGT
*
32440343 TCACACGGGCATGTCTACTAGCCGTGTGAGGCACACGGTCTGT
1 TCACACGGGCATGTCTACTAGCCGTGTGAGGCACACAGTCTGT
32440386 TCACACGGGC
1 TCACACGGGC
32440396 TGAGACCTTT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 51 1.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (43 bp):
TCACACGGGCATGTCTACTAGCCGTGTGAGGCACACAGTCTGT
Found at i:32450504 original size:79 final size:79
Alignment explanation
Indices: 32450360--32450577 Score: 235
Period size: 79 Copynumber: 2.7 Consensus size: 79
32450350 GAATCACGTA
* ** *
32450360 CCTTCGGAATTTAACCGGATATAGCAACTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATAGT
1 CCTTCGGAACTTAACCGGATATAGCAACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAGT
32450425 AACTCGCACAAATG
66 AACTCGCACAAATG
* * * * *
32450439 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGGA-ATTA
1 CCTTCGGAACTTAA-CCGGATATAGCAACTCGCACAAATGCCTTCGGGACATAGCCCGGATA-TA
32450502 GTAACTCGCACAAATG
64 GTAACTCGCACAAATG
* * ** ** *
32450518 CCTTCGGATCTTAGTCCGGATATAGTCATTTATCACAAA-GCCTTCGGGACTTAGCCCGGA
1 CCTTCGGAACTTA-ACCGGATATAG-CAACTCGCACAAATGCCTTCGGGACATAGCCCGGA
32450578 CATCATTTGA
Statistics
Matches: 115, Mismatches: 19, Indels: 9
0.80 0.13 0.06
Matches are distributed among these distances:
78 1 0.01
79 68 0.59
80 46 0.40
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (79 bp):
CCTTCGGAACTTAACCGGATATAGCAACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAGT
AACTCGCACAAATG
Found at i:32450577 original size:40 final size:40
Alignment explanation
Indices: 32450374--32450577 Score: 236
Period size: 40 Copynumber: 5.1 Consensus size: 40
32450364 CGGAATTTAA
* ** *
32450374 CCGGATATAGCAACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
32450414 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
32450454 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
32450493 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
** **
32450533 CCGGATATAGTCATTTATCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGT-AACTCGCACAAATGCCTTCGGGACTTAGC
32450573 CCGGA
1 CCGGA
32450578 CATCATTTGA
Statistics
Matches: 140, Mismatches: 18, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:32454852 original size:46 final size:46
Alignment explanation
Indices: 32454802--32454971 Score: 175
Period size: 46 Copynumber: 3.7 Consensus size: 46
32454792 TTGAGCATCA
* *
32454802 GAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAATGTTC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTTC
* * * * *
32454848 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CGTTC
* * * *
32454895 GAACTCGTTGAGTTGAGTCTGAGTTCATTTATGGATGCGAACGCTC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTTC
*
32454941 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
32454972 GGGGCGGGTT
Statistics
Matches: 99, Mismatches: 18, Indels: 14
0.76 0.14 0.11
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 55 0.56
47 27 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTTC
Found at i:32454955 original size:93 final size:93
Alignment explanation
Indices: 32454796--32454966 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
32454786 GGATGGTTGA
* *
32454796 GCATCAGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAATGTTCGAACTCGTTGAGT
1 GCATCAGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGCTCGAACTCGTTGAGT
32454861 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* ** * * *
32454889 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCATTTATGGATGCGAACGCTCGAGCTCGTTGAGT
1 GCATCAGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGCTCGAACTCGTTGAGT
32454954 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
32454967 ACTTAGGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCAGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGCTCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:32466414 original size:48 final size:48
Alignment explanation
Indices: 32466254--32466422 Score: 170
Period size: 48 Copynumber: 3.6 Consensus size: 48
32466244 TGATATGTGT
*
32466254 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCAT--AGCAT-G--AGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-TCGAG-ATAGTCA-A
* *
32466300 GCAAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAGTTAA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAGTCAA
* * * * *
32466348 GCCAATGTATGACATGTCTGAGACATGCATTGGCCTCGCGATA-TACAA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAGT-CAA
* *
32466396 GCTAGTGTAAGACCTGTCTGGGACATG
1 GCCAGTGTAAGACATGTCTGGGACATG
32466423 GAATCAGCTT
Statistics
Matches: 103, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
45 1 0.01
46 35 0.34
47 4 0.04
48 62 0.60
49 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (48 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAGTCAA
Found at i:32468347 original size:40 final size:40
Alignment explanation
Indices: 32468310--32468387 Score: 113
Period size: 40 Copynumber: 2.0 Consensus size: 40
32468300 ATGTTTGATG
32468310 ACAAATT-GGCTAAATATGGCACTTAGTGTGCGGTTTGAC
1 ACAAATTCGGCTAAATATGGCACTTAGTGTGCGGTTTGAC
* ** *
32468349 ATAGCTTCGGCTAAATATGGCACTTAGTGTGCGATTTGA
1 ACAAATTCGGCTAAATATGGCACTTAGTGTGCGGTTTGA
32468388 GATAGTTTCG
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.32
Consensus pattern (40 bp):
ACAAATTCGGCTAAATATGGCACTTAGTGTGCGGTTTGAC
Found at i:32468413 original size:40 final size:40
Alignment explanation
Indices: 32468319--32468420 Score: 114
Period size: 40 Copynumber: 2.5 Consensus size: 40
32468309 GACAAATTGG
* * * *
32468319 CTAAATATGGCACTTAGTGTGCGGTTTGACATAGCTTCGG
1 CTAAATACGACACTTAGTGTGCGATTTGACATAGCTTCGA
* * * *
32468359 CTAAATATGGCACTTAGTGTGCGATTTGAGATAGTTTCGA
1 CTAAATACGACACTTAGTGTGCGATTTGACATAGCTTCGA
**
32468399 CTATGTACGACACTTAGTGTGC
1 CTAAATACGACACTTAGTGTGC
32468421 AAGACATCGA
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 54 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (40 bp):
CTAAATACGACACTTAGTGTGCGATTTGACATAGCTTCGA
Found at i:32468447 original size:28 final size:28
Alignment explanation
Indices: 32468407--32468474 Score: 84
Period size: 28 Copynumber: 2.4 Consensus size: 28
32468397 GACTATGTAC
*
32468407 GACACTTAGTGTGC-AAGACATCGAGTAT
1 GACACTTAGTGTGCGAA-ACATCGAGAAT
*
32468435 GACACTTAGTGTGCGAAACATTGAGAAT
1 GACACTTAGTGTGCGAAACATCGAGAAT
**
32468463 GGTACTTAGTGT
1 GACACTTAGTGT
32468475 CTGAGATATT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 33 0.94
29 2 0.06
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (28 bp):
GACACTTAGTGTGCGAAACATCGAGAAT
Found at i:32470923 original size:37 final size:37
Alignment explanation
Indices: 32470875--32470971 Score: 113
Period size: 37 Copynumber: 2.6 Consensus size: 37
32470865 TGAGTACGTA
*
32470875 TAAGACTATAGCTGGGCTATGGCATCATAATAACATG
1 TAAGACCATAGCTGGGCTATGGCATCATAATAACATG
* ** * **
32470912 TAAGACCATAGCTGGACTATGGCATTGTGATCCCATG
1 TAAGACCATAGCTGGGCTATGGCATCATAATAACATG
* *
32470949 TAAGACCATATCTGGGATATGGC
1 TAAGACCATAGCTGGGCTATGGC
32470972 GTTGGCATCG
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 50 1.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.27
Consensus pattern (37 bp):
TAAGACCATAGCTGGGCTATGGCATCATAATAACATG
Found at i:32470997 original size:48 final size:48
Alignment explanation
Indices: 32470937--32471038 Score: 195
Period size: 48 Copynumber: 2.1 Consensus size: 48
32470927 ACTATGGCAT
32470937 TGTGATCCCATGTAAGACCATATCTGGGATATGGCGTTGGCATCGATA
1 TGTGATCCCATGTAAGACCATATCTGGGATATGGCGTTGGCATCGATA
*
32470985 TGTGATCCCATGTAAGACCATATTTGGGATATGGCGTTGGCATCGATA
1 TGTGATCCCATGTAAGACCATATCTGGGATATGGCGTTGGCATCGATA
32471033 TGTGAT
1 TGTGAT
32471039 TTCGTATAAG
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 53 1.00
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATATCTGGGATATGGCGTTGGCATCGATA
Found at i:32471049 original size:48 final size:48
Alignment explanation
Indices: 32470937--32471067 Score: 190
Period size: 48 Copynumber: 2.7 Consensus size: 48
32470927 ACTATGGCAT
* *
32470937 TGTGATCCCATGTAAGACCATATCTGGGATATGGCGTTGGCATCGATA
1 TGTGATCCCATATAAGACCATATTTGGGATATGGCGTTGGCATCGATA
*
32470985 TGTGATCCCATGTAAGACCATATTTGGGATATGGCGTTGGCATCGATA
1 TGTGATCCCATATAAGACCATATTTGGGATATGGCGTTGGCATCGATA
** * * *
32471033 TGTGATTTCGTATAAGACCATGTTTGGGACATGGC
1 TGTGATCCCATATAAGACCATATTTGGGATATGGC
32471068 ATCAAGAAGA
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 76 1.00
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.31
Consensus pattern (48 bp):
TGTGATCCCATATAAGACCATATTTGGGATATGGCGTTGGCATCGATA
Found at i:32475548 original size:40 final size:40
Alignment explanation
Indices: 32475467--32475570 Score: 118
Period size: 40 Copynumber: 2.6 Consensus size: 40
32475457 ACGATTAATT
**
32475467 GGCTAAATATGGCACTTAGTGTGCGGTTCGACATAGCTTC
1 GGCTAAATATGGCACTTAGTGTGCAATTCGACATAGCTTC
* * * *
32475507 GGCTAAATATGGCACTTAGTGTTCAATTTGAGATAGTTTC
1 GGCTAAATATGGCACTTAGTGTGCAATTCGACATAGCTTC
** * *
32475547 GGCTATGTACGACACTTAGTGTGC
1 GGCTAAATATGGCACTTAGTGTGC
32475571 GAGACATCGA
Statistics
Matches: 53, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 53 1.00
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (40 bp):
GGCTAAATATGGCACTTAGTGTGCAATTCGACATAGCTTC
Found at i:32475599 original size:28 final size:28
Alignment explanation
Indices: 32475557--32475668 Score: 100
Period size: 28 Copynumber: 4.0 Consensus size: 28
32475547 GGCTATGTAC
* *
32475557 GACACTTAGTGTGCGAGACATCGAGTAT
1 GACACTTTGTGTGCGAGACATTGAGTAT
* * *
32475585 GTCACTTTGTGTGCGAAACATTGAGAAT
1 GACACTTTGTGTGCGAGACATTGAGTAT
* * *
32475613 GGCA-TTTAGTGTGCGAGATATTGAGTAC
1 GACACTTT-GTGTGCGAGACATTGAGTAT
* * * *
32475641 AACACTTTGTGTGGGAAATATTGAGTAT
1 GACACTTTGTGTGCGAGACATTGAGTAT
32475669 TCAATTGGCA
Statistics
Matches: 67, Mismatches: 15, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
27 3 0.04
28 61 0.91
29 3 0.04
ACGTcount: A:0.29, C:0.12, G:0.28, T:0.31
Consensus pattern (28 bp):
GACACTTTGTGTGCGAGACATTGAGTAT
Found at i:32491193 original size:96 final size:95
Alignment explanation
Indices: 32491072--32491248 Score: 230
Period size: 96 Copynumber: 1.9 Consensus size: 95
32491062 GTGATTGCTA
* * ** *
32491072 GTGTAAGACCATGTCCGGGATATGGCATCAGCACCGATAGATTAGAG-CTAGTGTAAGACCGTGT
1 GTGTAAGACCATGTCCGGGACATGGCATCAGCACAGATAGACGAGAGTC-AGTG-AAGACCATGT
*
32491136 TTGGGACATGACATCAGCTATGAGATGTGTCG
64 CTGGGACATGACATCAGCTATGAGATGTGTCG
** * *
32491168 GTGTAAGACCATGTCTTGGACATGGCATTAGCACAGATGGACGAGAGTCAGTGAAGACCATGTCT
1 GTGTAAGACCATGTCCGGGACATGGCATCAGCACAGATAGACGAGAGTCAGTGAAGACCATGTCT
*
32491233 GGGACATGGCATCAGC
66 GGGACATGACATCAGC
32491249 CTCGACATAC
Statistics
Matches: 69, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
95 25 0.36
96 43 0.62
97 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.23
Consensus pattern (95 bp):
GTGTAAGACCATGTCCGGGACATGGCATCAGCACAGATAGACGAGAGTCAGTGAAGACCATGTCT
GGGACATGACATCAGCTATGAGATGTGTCG
Found at i:32491261 original size:49 final size:48
Alignment explanation
Indices: 32491022--32491396 Score: 225
Period size: 50 Copynumber: 7.7 Consensus size: 48
32491012 ACAAGATAGT
* * * * ** ** **
32491022 TAGTGTAAGAACATGTCTAGGACATGGCATCGGCATTGATGTGATTGC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCAATACGAGAGC
* * *
32491070 TAGTGTAAGACCATGTCCGGGATATGGCATCAGCAC-CGATA-GATTAGAGC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCAGC-CTCAATACG---AGAGC
* * * *
32491120 TAGTGTAAGACCGTGTTTGGGACATGACATCAG-CT--AT--GAGATGTG
1 TAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCAATACGAGA-G-C
* * * *
32491165 TCGGTGTAAGACCATGTCTTGGACATGGCATTAG-CACAGATGGACGAGAG-
1 T-AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCA-AT--ACGAGAGC
32491215 TCAGTG-AAGACCATGTCTGGGACATGGCATCAGCCTCGACATACGAGAGC
1 T-AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTC-A-ATACGAGAGC
* ** * * *
32491265 TAGTTTAAGACCATGTCTGGGACATGGTGTCTGGCTCAATACATGATAG-
1 TAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCAATAC--GAGAGC
* ** *
32491314 TCAGTGTAAGACCATGTCTGGGACATGGCATC-GACTTTGATACGTGAGC
1 T-AGTGTAAGACCATGTCTGGGACATGGCATCAG-CCTCAATACGAGAGC
*
32491363 TAGTGTAAGACCATGTCTGGGACACGGCATCAGC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCAGC
32491397 TTCCTACCCT
Statistics
Matches: 258, Mismatches: 44, Indels: 50
0.73 0.12 0.14
Matches are distributed among these distances:
43 3 0.01
44 1 0.00
45 1 0.00
46 28 0.11
47 3 0.01
48 70 0.27
49 42 0.16
50 102 0.40
51 3 0.01
52 1 0.00
53 4 0.02
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (48 bp):
TAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCAATACGAGAGC
Found at i:32497227 original size:30 final size:30
Alignment explanation
Indices: 32497193--32497251 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
32497183 ATGTTAGCAG
*
32497193 CTAAAAAATTCGCGATATCTGCAAACCAAA
1 CTAAAAAATTCACGATATCTGCAAACCAAA
* *
32497223 CTAAAAAATTCACGATGTCTGTAAACCAA
1 CTAAAAAATTCACGATATCTGCAAACCAA
32497252 GGTACCTCGG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.46, C:0.22, G:0.10, T:0.22
Consensus pattern (30 bp):
CTAAAAAATTCACGATATCTGCAAACCAAA
Found at i:32505052 original size:91 final size:91
Alignment explanation
Indices: 32504897--32505074 Score: 304
Period size: 91 Copynumber: 2.0 Consensus size: 91
32504887 AGAATACATC
*
32504897 ATTCAAACCCACTGAGAATAGATAAGAAAATGACAATATACTTCCCATATATGTATATATATCAG
1 ATTCAAACCCACTGAGAATAGATAAGAAAAGGACAATATACTTCCCATATATGTATATATATCAG
*
32504962 GCAGAGCAATAATTAGAAGAAACAGG
66 ACAGAGCAATAATTAGAAGAAACAGG
* *
32504988 ATTCAAACCCACTGGGAATAGATACA-ACAAGGACAATATACTTCCCATATATGTATATATATCA
1 ATTCAAACCCACTGAGAATAGATA-AGAAAAGGACAATATACTTCCCATATATGTATATATATCA
32505052 GACAGAGCAATAATTAGAAGAAA
65 GACAGAGCAATAATTAGAAGAAA
32505075 TAGAATCATA
Statistics
Matches: 82, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
91 81 0.99
92 1 0.01
ACGTcount: A:0.46, C:0.16, G:0.15, T:0.23
Consensus pattern (91 bp):
ATTCAAACCCACTGAGAATAGATAAGAAAAGGACAATATACTTCCCATATATGTATATATATCAG
ACAGAGCAATAATTAGAAGAAACAGG
Found at i:32511938 original size:27 final size:27
Alignment explanation
Indices: 32511908--32511966 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
32511898 GAGTCCACTT
32511908 ATTTTACTTTTATCTTTATCT-TTATTA
1 ATTTTACTTTTAT-TTTATCTCTTATTA
* * * *
32511935 ATTTCAGTTTTATTTTGTCTCTTATTT
1 ATTTTACTTTTATTTTATCTCTTATTA
32511962 ATTTT
1 ATTTT
32511967 TGAAGATTTA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
26 6 0.23
27 20 0.77
ACGTcount: A:0.19, C:0.10, G:0.03, T:0.68
Consensus pattern (27 bp):
ATTTTACTTTTATTTTATCTCTTATTA
Done.