Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 97 of 344
Found at i:32514422 original size:40 final size:40
Alignment explanation
Indices: 32514338--32514562 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
32514328 TTGAATGATG
* * * *
32514338 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
32514378 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
32514418 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
32514457 TCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
32514497 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
32514538 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32514563 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 34 0.21
40 119 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:32514584 original size:119 final size:119
Alignment explanation
Indices: 32514338--32514595 Score: 283
Period size: 119 Copynumber: 2.2 Consensus size: 119
32514328 TTGAATGATG
* *
32514338 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* ** *
32514403 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
* * * **
32514457 TCCGGGTTAAGTCCCGAAGGCATTTGTG-TGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
32514520 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTGA-CTAAA
* *
32514577 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
32514596 TACGTGATTT
Statistics
Matches: 117, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
118 3 0.03
119 84 0.72
120 30 0.26
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
Found at i:32520126 original size:27 final size:27
Alignment explanation
Indices: 32520095--32520245 Score: 169
Period size: 27 Copynumber: 5.6 Consensus size: 27
32520085 TAAATTGTAC
*
32520095 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
32520122 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
32520148 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
32520176 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
32520204 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
32520231 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
32520246 GGCTCAATAT
Statistics
Matches: 104, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
27 81 0.78
28 23 0.22
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:32520209 original size:82 final size:81
Alignment explanation
Indices: 32520096--32520245 Score: 230
Period size: 82 Copynumber: 1.8 Consensus size: 81
32520086 AAATTGTACA
*
32520096 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATAT-ATAGCACTAAGTG
32520160 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** * *
32520177 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATATAGCACTAAGTG
32520242 TGCG
65 TGCG
32520246 GGCTCAATAT
Statistics
Matches: 62, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 17 0.27
82 45 0.73
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATATAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:32520236 original size:55 final size:53
Alignment explanation
Indices: 32520095--32520245 Score: 167
Period size: 55 Copynumber: 2.8 Consensus size: 53
32520085 TAAATTGTAC
* *
32520095 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAAATGAATATG
* ** ** *
32520148 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGA-AATGAATATG
* * * *
32520203 TAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 -AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCG
32520246 GGCTCAATAT
Statistics
Matches: 81, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
53 1 0.01
54 38 0.47
55 41 0.51
56 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (53 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAAATGAATATG
Found at i:32520256 original size:27 final size:27
Alignment explanation
Indices: 32520177--32520256 Score: 70
Period size: 27 Copynumber: 2.9 Consensus size: 27
32520167 TGACCATGCG
* * * *
32520177 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
* * *
32520205 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
32520232 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
32520257 CATTCGTGAA
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
27 29 0.64
28 16 0.36
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:32528138 original size:27 final size:27
Alignment explanation
Indices: 32528107--32528284 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
32528097 TAAATTGTAC
32528107 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
32528134 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32528160 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
32528188 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
32528216 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32528243 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
32528270 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
32528285 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:32528221 original size:82 final size:81
Alignment explanation
Indices: 32528108--32528263 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
32528098 AAATTGTACA
* *
32528108 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
32528172 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
32528189 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
32528254 TGCGAGTTGA
65 TGCGAATTGA
32528264 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:32528275 original size:82 final size:81
Alignment explanation
Indices: 32528104--32528284 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
32528094 GATTAAATTG
* *
32528104 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
32528169 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
32528185 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
32528249 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
32528267 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
32528285 GGCTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:32528295 original size:27 final size:27
Alignment explanation
Indices: 32528189--32528295 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
32528179 TGACCATGCG
* * * *
32528189 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
32528217 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
32528244 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
32528271 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
32528296 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:32533760 original size:79 final size:80
Alignment explanation
Indices: 32533622--32533846 Score: 262
Period size: 79 Copynumber: 2.8 Consensus size: 80
32533612 TTGAATGATG
* * * * * *
32533622 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA--AGTGACCATATCCGGACTAAGAT-CTGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTG-G-TACGAGTTACTATAACCGGGCTAAG-TCCCGAAGGCA
*
32533684 TTTGTGCGAGATACTAAT
63 TTTGTGCGAGATACTAAA
* *
32533702 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTACGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATT
*
32533765 TGTGCGAGTTACTAAA
65 TGTGCGAGATACTAAA
* * *
32533781 TCCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTACGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
32533846 G
66 G
32533847 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
77 1 0.01
78 3 0.02
79 60 0.48
80 58 0.47
81 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTACGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:32533852 original size:40 final size:40
Alignment explanation
Indices: 32533622--32533846 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
32533612 TTGAATGATG
* * * *
32533622 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
32533662 TCCGGACTAAGAT-CTGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
32533702 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
32533741 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
32533781 TCCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
32533822 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32533847 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 18, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
39 33 0.20
40 119 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:32533864 original size:80 final size:80
Alignment explanation
Indices: 32533677--32533879 Score: 218
Period size: 80 Copynumber: 2.6 Consensus size: 80
32533667 ACTAAGATCT
** * * *
32533677 GAAGGCATTTGTGCGAGAT-ACTAATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAA
1 GAAGGCATTTGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTGGTACGAGTTACTAA
*
32533740 ATCCGGGTTAAGTCCC
65 ATCCGGGCTAAGTCCC
** * *
32533756 GAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACTATA
1 GAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTGGTACGAGTTACTA-A
*
32533821 A-CCGGGCTATGTCCC
65 ATCCGGGCTAAGTCCC
* * *
32533836 GAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 GAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
32533880 TACGTGATTT
Statistics
Matches: 108, Mismatches: 12, Indels: 8
0.84 0.09 0.06
Matches are distributed among these distances:
78 1 0.01
79 47 0.44
80 58 0.54
81 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
GAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTGGTACGAGTTACTAAA
TCCGGGCTAAGTCCC
Found at i:32540454 original size:29 final size:29
Alignment explanation
Indices: 32540368--32540489 Score: 109
Period size: 29 Copynumber: 4.2 Consensus size: 29
32540358 AAAGGAAGTA
* * *
32540368 TTTATGGTGATCTCTACTATAAGAAATCC
1 TTTATGGTGATCTCTATTATAAAAAAGCC
* * * * * *
32540397 TTTGTCGTGATCTTTGTTATAAGAGAGCC
1 TTTATGGTGATCTCTATTATAAAAAAGCC
* *
32540426 ATTATGGTGATCTGTATTATAAAAAAGCC
1 TTTATGGTGATCTCTATTATAAAAAAGCC
* ** *
32540455 TTTGTGGCAAACTCTATTATAAAAAAGCC
1 TTTATGGTGATCTCTATTATAAAAAAGCC
32540484 TTTATG
1 TTTATG
32540490 AAAAAATTTG
Statistics
Matches: 72, Mismatches: 21, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
29 72 1.00
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.38
Consensus pattern (29 bp):
TTTATGGTGATCTCTATTATAAAAAAGCC
Found at i:32540489 original size:58 final size:58
Alignment explanation
Indices: 32540368--32540489 Score: 127
Period size: 58 Copynumber: 2.1 Consensus size: 58
32540358 AAAGGAAGTA
* * ** * * * * *
32540368 TTTATGGTGATCTCTACTATAAGAAATCCTTTGTCGTGATCTTTGTTATAAGAGAGCC
1 TTTATGGTGATCTCTACTATAAAAAAGCCTTTGTCGCAAACTCTATTATAAAAAAGCC
* * * *
32540426 ATTATGGTGATCTGTATTATAAAAAAGCCTTTGTGGCAAACTCTATTATAAAAAAGCC
1 TTTATGGTGATCTCTACTATAAAAAAGCCTTTGTCGCAAACTCTATTATAAAAAAGCC
32540484 TTTATG
1 TTTATG
32540490 AAAAAATTTG
Statistics
Matches: 50, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
58 50 1.00
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.38
Consensus pattern (58 bp):
TTTATGGTGATCTCTACTATAAAAAAGCCTTTGTCGCAAACTCTATTATAAAAAAGCC
Found at i:32540503 original size:29 final size:29
Alignment explanation
Indices: 32540440--32540505 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 29
32540430 TGGTGATCTG
* ** *
32540440 TATTATAAAAAAGCCTTTGTGGCAAACTC
1 TATTATAAAAAAGCCTTTATGAAAAAATC
*
32540469 TATTATAAAAAAGCCTTTATGAAAAAATT
1 TATTATAAAAAAGCCTTTATGAAAAAATC
*
32540498 TGTTATAA
1 TATTATAA
32540506 GGAATCCTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.44, C:0.11, G:0.11, T:0.35
Consensus pattern (29 bp):
TATTATAAAAAAGCCTTTATGAAAAAATC
Found at i:32540561 original size:29 final size:29
Alignment explanation
Indices: 32540529--32540675 Score: 163
Period size: 29 Copynumber: 5.1 Consensus size: 29
32540519 GCTATGTTTG
* *
32540529 TTTGTGGCTATCTTTGTTAAAAGAATGCC
1 TTTGTGGCTATCTCTATTAAAAGAATGCC
*
32540558 TTTGAGGCTATCTCTATTCAAAAG-ATGCC
1 TTTGTGGCTATCTCTATT-AAAAGAATGCC
* **
32540587 TTTATGGCTATCTCTATTAAAAGAATTTC
1 TTTGTGGCTATCTCTATTAAAAGAATGCC
* *
32540616 TATGTGGCTATCTCTATTAAAAGGATGCC
1 TTTGTGGCTATCTCTATTAAAAGAATGCC
* * *
32540645 TTT-TTGATCATCTCTATTAAAGGAATGCC
1 TTTGTGGCT-ATCTCTATTAAAAGAATGCC
32540674 TT
1 TT
32540676 ATGGCAAACT
Statistics
Matches: 98, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
28 8 0.08
29 85 0.87
30 5 0.05
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (29 bp):
TTTGTGGCTATCTCTATTAAAAGAATGCC
Found at i:32546358 original size:26 final size:26
Alignment explanation
Indices: 32546329--32546430 Score: 123
Period size: 26 Copynumber: 3.9 Consensus size: 26
32546319 CAAACACACC
*
32546329 AATATCACTGCAAAGCTGCCAGTAAT
1 AATATCACAGCAAAGCTGCCAGTAAT
* * *
32546355 AATATCACAACAAAGCTACCAATAAT
1 AATATCACAGCAAAGCTGCCAGTAAT
* *
32546381 AATATCATAGCAAAGCTGCCAGTAAC
1 AATATCACAGCAAAGCTGCCAGTAAT
* * *
32546407 AGTATCGCAGCAAAGCTGTCAGTA
1 AATATCACAGCAAAGCTGCCAGTA
32546431 TCAGTATATG
Statistics
Matches: 63, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 63 1.00
ACGTcount: A:0.42, C:0.23, G:0.15, T:0.21
Consensus pattern (26 bp):
AATATCACAGCAAAGCTGCCAGTAAT
Found at i:32546484 original size:27 final size:27
Alignment explanation
Indices: 32546426--32546490 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
32546416 GCAAAGCTGT
*
32546426 CAGTATCAGTATATGTGGCAAAGCCAC
1 CAGTAACAGTATATGTGGCAAAGCCAC
* *
32546453 CAGTAACAGTATATGTGGCAATGCTAC
1 CAGTAACAGTATATGTGGCAAAGCCAC
*
32546480 GAGTAACAGTA
1 CAGTAACAGTA
32546491 CACTTCCTCC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.23
Consensus pattern (27 bp):
CAGTAACAGTATATGTGGCAAAGCCAC
Found at i:32548086 original size:28 final size:28
Alignment explanation
Indices: 32548053--32548111 Score: 100
Period size: 28 Copynumber: 2.1 Consensus size: 28
32548043 AATCAATGAG
*
32548053 TTAGTCACATAACAAAGCATCATGTAAT
1 TTAGTCACACAACAAAGCATCATGTAAT
*
32548081 TTAGTCACACAACAAAGCATTATGTAAT
1 TTAGTCACACAACAAAGCATCATGTAAT
32548109 TTA
1 TTA
32548112 TGTAGGTGAG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.42, C:0.17, G:0.10, T:0.31
Consensus pattern (28 bp):
TTAGTCACACAACAAAGCATCATGTAAT
Found at i:32552878 original size:26 final size:26
Alignment explanation
Indices: 32552829--32552878 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
32552819 CCAACACACC
*
32552829 AATATCGCAGCAAAACTGCCAGTAAT
1 AATATCGCAGCAAAACTACCAGTAAT
* *
32552855 AATATCGCAGCAAAGCTACTAGTA
1 AATATCGCAGCAAAACTACCAGTA
32552879 TCAGTATTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.42, C:0.22, G:0.16, T:0.20
Consensus pattern (26 bp):
AATATCGCAGCAAAACTACCAGTAAT
Found at i:32556251 original size:27 final size:27
Alignment explanation
Indices: 32556221--32556418 Score: 238
Period size: 27 Copynumber: 7.3 Consensus size: 27
32556211 TACTGAAATG
**
32556221 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* *
32556248 CCCTCGATTT-CTAGAATTACCGTTTCA
1 CCCTCGATTTAC-AGAATTACCATTTTA
* * *
32556275 CCCTCGATTTACAAAATAACCGTTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* *
32556302 CCCTCGATTTATAGAATTATCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* *
32556329 CCCTCGATTTACAGAATTATCGTTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* *
32556356 CCCTTGATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
*
32556383 CCCTC-AGTTTACAAAATTACCATTTTA
1 CCCTCGA-TTTACAGAATTACCATTTTA
32556410 CCCTCGATT
1 CCCTCGATT
32556419 GTGAAATTAC
Statistics
Matches: 149, Mismatches: 18, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
26 1 0.01
27 146 0.98
28 2 0.01
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACCATTTTA
Found at i:32556336 original size:81 final size:81
Alignment explanation
Indices: 32556221--32556418 Score: 283
Period size: 81 Copynumber: 2.4 Consensus size: 81
32556211 TACTGAAATG
*
32556221 CCCTCGATTTGTAGAATTACCATTTTACCCTCGATTT-CTAGAATTACCGTTTCACCCTCGATTT
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTAC-AGAATTACCGTTTCACCCTCGATTT
*
32556285 ACAAAATAACCGTTTTA
65 ACAAAATAACCATTTTA
* * * *
32556302 CCCTCGATTTATAGAATTATCATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTTGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTA
*
32556367 CAAAATTACCATTTTA
66 CAAAATAACCATTTTA
* *
32556383 CCCTC-AGTTTACAAAATTACCATTTTACCCTCGATT
1 CCCTCGA-TTTATAGAATTACCATTTTACCCTCGATT
32556419 GTGAAATTAC
Statistics
Matches: 105, Mismatches: 10, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
80 1 0.01
81 103 0.98
82 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.39
Consensus pattern (81 bp):
CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTA
CAAAATAACCATTTTA
Found at i:32556480 original size:27 final size:27
Alignment explanation
Indices: 32556450--32556519 Score: 90
Period size: 27 Copynumber: 2.6 Consensus size: 27
32556440 TATAGGATAG
**
32556450 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCCTGA-TTTACAA
32556477 AATTACCAAAATACCCCTGATTTACAA
1 AATTACCAAAATACCCCTGATTTACAA
32556504 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
32556520 TTGACTTTCT
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
26 2 0.05
27 36 0.92
28 1 0.03
ACGTcount: A:0.44, C:0.24, G:0.06, T:0.26
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGATTTACAA
Found at i:32556570 original size:27 final size:27
Alignment explanation
Indices: 32556475--32556582 Score: 103
Period size: 27 Copynumber: 3.9 Consensus size: 27
32556465 CCTAGTTTGT
** * *
32556475 AAAATTACCAAAATACCCCTGATTTAC
1 AAAATTACTGAAATACCCTTGGTTTAC
* *
32556502 AAAATTACAGAAATACCCTTGACTTT-C
1 AAAATTACTGAAATACCCTTG-GTTTAC
*
32556529 TAAAAATTA-TAGAAATACCATTGGTTTAC
1 --AAAATTACT-GAAATACCCTTGGTTTAC
32556558 AAAATTACTGAAATACCCTTGGTTT
1 AAAATTACTGAAATACCCTTGGTTT
32556583 GTAGATTTAC
Statistics
Matches: 67, Mismatches: 8, Indels: 12
0.77 0.09 0.14
Matches are distributed among these distances:
27 41 0.61
28 7 0.10
29 19 0.28
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (27 bp):
AAAATTACTGAAATACCCTTGGTTTAC
Found at i:32556657 original size:27 final size:27
Alignment explanation
Indices: 32556627--32556678 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
32556617 GACTAAAATA
32556627 CCCCTAATA-GGTAAAAAGACCGTAAAG
1 CCCCT-ATAGGGTAAAAAGACCGTAAAG
**
32556654 CCCCTATAGGGTAAAGTGACCGTAA
1 CCCCTATAGGGTAAAAAGACCGTAA
32556679 TACCCTTGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 3 0.14
27 19 0.86
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.17
Consensus pattern (27 bp):
CCCCTATAGGGTAAAAAGACCGTAAAG
Found at i:32557576 original size:24 final size:25
Alignment explanation
Indices: 32557500--32557569 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
32557490 AGGAAGTGCT
* * * *
32557500 AAAAGGGCTATGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
32557525 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
32557550 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
32557570 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:32557582 original size:24 final size:25
Alignment explanation
Indices: 32557500--32557582 Score: 84
Period size: 25 Copynumber: 3.4 Consensus size: 25
32557490 AGGAAGTGCT
* * *
32557500 AAAAG-GGCTATGCCCTAGTTTACC
1 AAAAGAGGCTTTGCCCCAGTTTATC
32557524 GAAAAG-GGCTTTGCCCCAGTTTATC
1 -AAAAGAGGCTTTGCCCCAGTTTATC
*
32557549 AAAA-AGGGCTTTGCCCCAG-TTATT
1 AAAAGA-GGCTTTGCCCCAGTTTATC
32557573 AAAAGAGGCT
1 AAAAGAGGCT
32557583 AGGCCTCCAA
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
24 16 0.31
25 35 0.69
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (25 bp):
AAAAGAGGCTTTGCCCCAGTTTATC
Found at i:32557823 original size:30 final size:30
Alignment explanation
Indices: 32557789--32557862 Score: 121
Period size: 31 Copynumber: 2.4 Consensus size: 30
32557779 CGCTTACAGT
*
32557789 AAAGGCTTCGGCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCAATGATATGATTTATGA
*
32557819 AAAGGCTTCAGCCCAATGATATGATTTATGA
1 AAAGGCTTC-GGCCAATGATATGATTTATGA
32557850 AAAGGCTTCGGCC
1 AAAGGCTTCGGCC
32557863 CAGTACATGT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
30 12 0.30
31 28 0.70
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (30 bp):
AAAGGCTTCGGCCAATGATATGATTTATGA
Found at i:32576101 original size:23 final size:23
Alignment explanation
Indices: 32576073--32576119 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
32576063 AAATTTGGCG
32576073 TATAACTAATTTTCGCATAATGT
1 TATAACTAATTTTCGCATAATGT
32576096 TATAACTAATTTTCGCATAATGT
1 TATAACTAATTTTCGCATAATGT
32576119 T
1 T
32576120 CGCAGCACAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.34, C:0.13, G:0.09, T:0.45
Consensus pattern (23 bp):
TATAACTAATTTTCGCATAATGT
Found at i:32586874 original size:43 final size:43
Alignment explanation
Indices: 32586825--32586969 Score: 159
Period size: 43 Copynumber: 3.4 Consensus size: 43
32586815 TATCCCAAAT
* * *
32586825 ATGGTCTTACATGTTATCACATATCGATGCCACTGTCCCAGAC
1 ATGGTCTTACACGTAATCACATATCGATGCCAATGTCCCAGAC
* * * *
32586868 AGGGTCTTACACGAAATCGA-ATAACGATGCCAATATCCCAGAC
1 ATGGTCTTACACGTAATC-ACATATCGATGCCAATGTCCCAGAC
** *
32586911 ATGGTCTTACACGTAATCACA-ATAAAATGCCAATGTCCCAAAC
1 ATGGTCTTACACGTAATCACATAT-CGATGCCAATGTCCCAGAC
*
32586954 ATGGTCTTACATGTAA
1 ATGGTCTTACACGTAA
32586970 GACCATATAT
Statistics
Matches: 84, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
42 2 0.02
43 81 0.96
44 1 0.01
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.26
Consensus pattern (43 bp):
ATGGTCTTACACGTAATCACATATCGATGCCAATGTCCCAGAC
Found at i:32601361 original size:28 final size:28
Alignment explanation
Indices: 32601293--32601474 Score: 285
Period size: 28 Copynumber: 6.5 Consensus size: 28
32601283 CATGAGATTG
* * * *
32601293 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
32601322 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
32601350 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
32601378 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
32601406 GCACTAAGTGTGCAAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATATA
32601434 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
32601461 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
32601475 GACTTAATAT
Statistics
Matches: 144, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
27 23 0.16
28 103 0.72
29 18 0.12
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:32609114 original size:18 final size:18
Alignment explanation
Indices: 32609074--32609114 Score: 50
Period size: 16 Copynumber: 2.4 Consensus size: 18
32609064 GCCCATTCCG
* *
32609074 AAGTATATATATACATAT
1 AAGTATGTATATACACAT
32609092 -A-TATGTATATACACAT
1 AAGTATGTATATACACAT
32609108 AAGTATG
1 AAGTATG
32609115 CCCATTCGTG
Statistics
Matches: 19, Mismatches: 2, Indels: 4
0.76 0.08 0.16
Matches are distributed among these distances:
16 13 0.68
17 2 0.11
18 4 0.21
ACGTcount: A:0.46, C:0.07, G:0.10, T:0.37
Consensus pattern (18 bp):
AAGTATGTATATACACAT
Found at i:32609623 original size:28 final size:28
Alignment explanation
Indices: 32609583--32609736 Score: 265
Period size: 28 Copynumber: 5.5 Consensus size: 28
32609573 TAAATTGTAC
32609583 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
32609611 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
32609639 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
32609667 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
32609695 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
32609722 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
32609737 GACTTAATAT
Statistics
Matches: 122, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
27 24 0.20
28 98 0.80
ACGTcount: A:0.26, C:0.12, G:0.29, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:32609750 original size:56 final size:56
Alignment explanation
Indices: 32609558--32609736 Score: 270
Period size: 56 Copynumber: 3.2 Consensus size: 56
32609548 GAGATTGGCG
* * * * *
32609558 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGCTTGATTATGTAGCA
*
32609615 CTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGCTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGCTTGATTATGTAGCA
*
32609671 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGCTTGATTATGTAGCA
*
32609726 CTGAGTGTGCG
1 CTAAGTGTGCG
32609737 GACTTAATAT
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
55 23 0.20
56 75 0.66
57 15 0.13
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (56 bp):
CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGCTTGATTATGTAGCA
Found at i:32621405 original size:40 final size:40
Alignment explanation
Indices: 32621343--32621558 Score: 287
Period size: 40 Copynumber: 5.4 Consensus size: 40
32621333 AAACCAAGTA
* * *
32621343 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
**
32621382 CCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
32621422 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
32621462 CCTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* *
32621502 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
32621542 CCTTCGGGGCTTAGCCC
1 CCTTCGGGACTTAGCCC
32621559 CGTTATCATC
Statistics
Matches: 160, Mismatches: 14, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 14 0.09
40 146 0.91
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:32624485 original size:26 final size:26
Alignment explanation
Indices: 32624456--32624540 Score: 68
Period size: 26 Copynumber: 3.3 Consensus size: 26
32624446 GTGAGAACAC
*
32624456 ATGTGTAGTACTATGTGCAGGCTACT
1 ATGTGTAGTACTAAGTGCAGGCTACT
* * * **
32624482 ATGTGT-TTAATACGGTTTTAGG-TCAC-
1 ATGTGTAGTACTA-AG-TGCAGGCT-ACT
32624508 ATGTGTAGTACTAAGTGCAGGCTACT
1 ATGTGTAGTACTAAGTGCAGGCTACT
32624534 ATGTGTA
1 ATGTGTA
32624541 CCAGATTGTT
Statistics
Matches: 43, Mismatches: 10, Indels: 12
0.66 0.15 0.18
Matches are distributed among these distances:
25 10 0.23
26 23 0.53
27 10 0.23
ACGTcount: A:0.25, C:0.13, G:0.26, T:0.36
Consensus pattern (26 bp):
ATGTGTAGTACTAAGTGCAGGCTACT
Found at i:32624572 original size:50 final size:50
Alignment explanation
Indices: 32624453--32624746 Score: 340
Period size: 50 Copynumber: 5.8 Consensus size: 50
32624443 GTTGTGAGAA
* ** *
32624453 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAATACGGTT-TTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTG--TACCA-GATTGTTAGGT
32624505 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
* * * * * *
32624555 CGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCA-ATAGCTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CCAGATTG-TTAGGT
* * * * *
32624606 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCTGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
* * * * *
32624656 CACATGTGTAGTACTAAGTACAAGCTACTACGTGTACTAGATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
*
32624706 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
32624747 GAGCTTCGAT
Statistics
Matches: 205, Mismatches: 33, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
49 3 0.01
50 128 0.62
51 41 0.20
52 33 0.16
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
Found at i:32624634 original size:101 final size:100
Alignment explanation
Indices: 32624504--32624746 Score: 317
Period size: 101 Copynumber: 2.4 Consensus size: 100
32624494 CGGTTTTAGG
* * *
32624504 TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGTTAGGTCACATGTGTAGTAC
** * * * *
32624569 TAAGTGTAGGCTACTATGCGTACCCA-ATAGCTTCGA
66 TAAGTACAAGCTACTACGCGTA-CCAGATAG-ATAGA
* * *
32624605 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCTGATGGTTAGGTCACATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGTTAGGTCACATGTGTAGTAC
* * * *
32624670 TAAGTACAAGCTACTACGTGTACTAGATTGATAGG
66 TAAGTACAAGCTACTACGCGTACCAGATAGATAGA
32624705 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
32624747 GAGCTTCGAT
Statistics
Matches: 122, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
100 43 0.35
101 79 0.65
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGTTAGGTCACATGTGTAGTAC
TAAGTACAAGCTACTACGCGTACCAGATAGATAGA
Found at i:32624733 original size:151 final size:151
Alignment explanation
Indices: 32624457--32624756 Score: 417
Period size: 151 Copynumber: 2.0 Consensus size: 151
32624447 TGAGAACACA
* *
32624457 TGTGTAGTACTATGTGCAGGCTACTATGTGTTTAATACGGTTTTAGGTCACATGTGTAGTACTAA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTTTAATA-GG-TTTAGGTCACATGTGTAGTACTAA
* * * * * *
32624522 GTGCAGGCTACTATGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGTAGGCTACTATG
64 GTACAAGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATG
*
32624587 CGTACCCA-ATAGCTTCGATCACG
129 CGTA-CCAGAGAGCTTCGATCACG
*
32624610 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCTGAT-GG-TTAGGTCACATGTGTAGTACTAA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGT-T-TAATAGGTTTAGGTCACATGTGTAGTACTAA
* *
32624673 GTACAAGCTACTACGTGTACTAGATTGATAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATG
64 GTACAAGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATG
*
32624738 TGTACCAGAGAGCTTCGAT
129 CGTACCAGAGAGCTTCGAT
32624757 TACAAGGGTG
Statistics
Matches: 131, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
150 3 0.02
151 93 0.71
153 31 0.24
154 1 0.01
155 3 0.02
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (151 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTTTAATAGGTTTAGGTCACATGTGTAGTACTAAGT
ACAAGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCG
TACCAGAGAGCTTCGATCACG
Found at i:32628779 original size:10 final size:10
Alignment explanation
Indices: 32628766--32628799 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
32628756 CTCAACTCAT
32628766 CTCATTTGAG
1 CTCATTTGAG
*
32628776 CTCATTTTAG
1 CTCATTTGAG
*
32628786 CTCATTTGAT
1 CTCATTTGAG
32628796 CTCA
1 CTCA
32628800 CCTTTATTTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.21, C:0.24, G:0.12, T:0.44
Consensus pattern (10 bp):
CTCATTTGAG
Found at i:32636189 original size:22 final size:23
Alignment explanation
Indices: 32636141--32636247 Score: 121
Period size: 22 Copynumber: 4.7 Consensus size: 23
32636131 TGATGGATAG
** **
32636141 TAAGCTCTATTGAGCTAAAACGG
1 TAAGCTCTAACGAGCTAAAACAA
32636164 TAAGCTCTAACGAGCT-AAACAA
1 TAAGCTCTAACGAGCTAAAACAA
32636186 TAAGCTCTAACGAGCT-AAACAA
1 TAAGCTCTAACGAGCTAAAACAA
*
32636208 TAAGCTC-ATACGAGCTAAAAACAG
1 TAAGCTCTA-ACGAGCT-AAAACAA
*
32636232 TAAGCTCTTACGAGCT
1 TAAGCTCTAACGAGCT
32636248 GATCTATCGA
Statistics
Matches: 74, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
21 1 0.01
22 40 0.54
23 14 0.19
24 19 0.26
ACGTcount: A:0.40, C:0.21, G:0.17, T:0.21
Consensus pattern (23 bp):
TAAGCTCTAACGAGCTAAAACAA
Found at i:32636226 original size:44 final size:46
Alignment explanation
Indices: 32636141--32636247 Score: 121
Period size: 46 Copynumber: 2.3 Consensus size: 46
32636131 TGATGGATAG
** **
32636141 TAAGCTCTATTGAGCTAAAACGGTAAGCTCTAACGAGCT-AAACAA
1 TAAGCTCTAACGAGCTAAAACAATAAGCTCTAACGAGCTAAAACAA
*
32636186 TAAGCTCTAACGAGCT-AAACAATAAGCTC-ATACGAGCTAAAAACAG
1 TAAGCTCTAACGAGCTAAAACAATAAGCTCTA-ACGAGCT-AAAACAA
*
32636232 TAAGCTCTTACGAGCT
1 TAAGCTCTAACGAGCT
32636248 GATCTATCGA
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
43 1 0.02
44 18 0.34
45 14 0.26
46 20 0.38
ACGTcount: A:0.40, C:0.21, G:0.17, T:0.21
Consensus pattern (46 bp):
TAAGCTCTAACGAGCTAAAACAATAAGCTCTAACGAGCTAAAACAA
Found at i:32643577 original size:9 final size:10
Alignment explanation
Indices: 32643565--32643621 Score: 57
Period size: 9 Copynumber: 5.8 Consensus size: 10
32643555 TACGTGGGAT
32643565 ATGATAT-AC
1 ATGATATGAC
*
32643574 ATGAT-TGAT
1 ATGATATGAC
32643583 ATGATATGCAC
1 ATGATATG-AC
*
32643594 ATGATATG-T
1 ATGATATGAC
32643603 ATGATATGCAC
1 ATGATATG-AC
32643614 ATGATATG
1 ATGATATG
32643622 TATGAAATGC
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
8 1 0.03
9 19 0.49
10 2 0.05
11 17 0.44
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.35
Consensus pattern (10 bp):
ATGATATGAC
Found at i:32643597 original size:20 final size:20
Alignment explanation
Indices: 32643564--32643638 Score: 111
Period size: 20 Copynumber: 3.9 Consensus size: 20
32643554 ATACGTGGGA
32643564 TATGATAT--ACATGAT-TG
1 TATGATATGCACATGATATG
32643581 ATATGATATGCACATGATATG
1 -TATGATATGCACATGATATG
32643602 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
*
32643622 TATGAAATGCACATGAT
1 TATGATATGCACATGAT
32643639 GAATTCATAA
Statistics
Matches: 53, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
18 8 0.15
20 43 0.81
21 2 0.04
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.35
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:32643599 original size:11 final size:11
Alignment explanation
Indices: 32643583--32643638 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
32643573 CATGATTGAT
32643583 ATGATATGCAC
1 ATGATATGCAC
*
32643594 ATGATATG--T
1 ATGATATGCAC
32643603 ATGATATGCAC
1 ATGATATGCAC
*
32643614 ATGATATG--T
1 ATGATATGCAC
*
32643623 ATGAAATGCAC
1 ATGATATGCAC
32643634 ATGAT
1 ATGAT
32643639 GAATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:32643717 original size:26 final size:26
Alignment explanation
Indices: 32643688--32643775 Score: 122
Period size: 26 Copynumber: 3.4 Consensus size: 26
32643678 GAGGAAGTGC
32643688 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
32643714 AAAAGGGCTTATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
32643740 AAAAGGAATTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
32643766 AAAAAGGCTT
1 AAAAGGGCTT
32643776 TGTAACACTC
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:32645507 original size:39 final size:39
Alignment explanation
Indices: 32645464--32645584 Score: 206
Period size: 39 Copynumber: 3.1 Consensus size: 39
32645454 AATTATGTTA
* *
32645464 CCAGCACAAAGCCTGTGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
32645503 CCAGCATGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
32645542 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
32645581 CCAG
1 CCAG
32645585 TGTCTTGCTT
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 77 1.00
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:32647177 original size:24 final size:25
Alignment explanation
Indices: 32647130--32647179 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
32647120 GGCTGTTACA
*
32647130 GGCTTTGCCCCAGTTTATCGAAAAG
1 GGCTTTGCCCCAGTTTATCAAAAAG
*
32647155 GGCTTTGCCCCAG-TTATTAAAAAG
1 GGCTTTGCCCCAGTTTATCAAAAAG
32647179 G
1 G
32647180 CTTGGTCTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 10 0.43
25 13 0.57
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (25 bp):
GGCTTTGCCCCAGTTTATCAAAAAG
Found at i:32656680 original size:25 final size:25
Alignment explanation
Indices: 32656629--32656684 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
32656619 CAACTCTTTC
*
32656629 GAGCTATGAACAGTAAGCTCCTCTT
1 GAGCTATGAACAGTAAGCTCCTATT
* *
32656654 GAGCTGATGGACAGTAAGCT-GTATT
1 GAGCT-ATGAACAGTAAGCTCCTATT
32656679 GAGCTA
1 GAGCTA
32656685 AAATGGTAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 1 0.04
25 13 0.48
26 13 0.48
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (25 bp):
GAGCTATGAACAGTAAGCTCCTATT
Found at i:32661947 original size:55 final size:54
Alignment explanation
Indices: 32661811--32661993 Score: 145
Period size: 55 Copynumber: 3.4 Consensus size: 54
32661801 GTTCAAGGAT
* * * *
32661811 ACCAAGTAAGACCATGCCAAGGAATGGCATTGGTAAATTCTACAAGGCAAGGAA
1 ACCATGTAAGACCATGCCAAGGAATGGCATTGATAAATACTACAAGGCAAAGAA
* * * * *
32661865 ATCATGTAAGACCATGTCAA-GATATGGCATTGATAAACTACTATAAGGGAAAGAT
1 ACCATGTAAGACCATGCCAAGGA-ATGGCATTGATAAA-TACTACAAGGCAAAGAA
* * * * * * * * * * * *
32661920 CCCATGTAACACCATGCCAAGGCATGGCAATGGTGAGTTC-ATAAGGTAAGGAT
1 ACCATGTAAGACCATGCCAAGGAATGGCATTGATAAATACTACAAGGCAAAGAA
32661973 ACCATGTAAGACCATGCCAAG
1 ACCATGTAAGACCATGCCAAG
32661994 ACATGGAAAT
Statistics
Matches: 103, Mismatches: 23, Indels: 7
0.77 0.17 0.05
Matches are distributed among these distances:
53 32 0.31
54 32 0.31
55 38 0.37
56 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.20
Consensus pattern (54 bp):
ACCATGTAAGACCATGCCAAGGAATGGCATTGATAAATACTACAAGGCAAAGAA
Found at i:32661987 original size:53 final size:54
Alignment explanation
Indices: 32661804--32662011 Score: 204
Period size: 53 Copynumber: 3.9 Consensus size: 54
32661794 CATTAGGGTT
* * * *
32661804 CAAGGATACCAAGTAAGACCATGCCAAGGA-ATGGCATTGGTAAATTCTACAAGG
1 CAAGGATACCATGTAAGACCATGCCAA-GACATGGCAATGGTAAGTTCTATAAGG
* * * * * * * *
32661858 CAAGGAAATCATGTAAGACCATGTCAAGATATGGCATTGATAAACTACTATAAGG
1 CAAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTCTATAAGG
* * * * * *
32661913 GAAAGATCCCATGTAACACCATGCCAAGGCATGGCAATGGTGAGTTC-ATAAGG
1 CAAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAAGG
* *
32661966 TAAGGATACCATGTAAGACCATGCCAAGACATGGAAATGGTAAGTT
1 CAAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
32662012 TAAAAAGAAA
Statistics
Matches: 123, Mismatches: 29, Indels: 5
0.78 0.18 0.03
Matches are distributed among these distances:
53 47 0.38
54 36 0.29
55 40 0.33
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.21
Consensus pattern (54 bp):
CAAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAAGG
Found at i:32665909 original size:14 final size:14
Alignment explanation
Indices: 32665890--32665919 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
32665880 AAAGTGAGTT
*
32665890 TTGGTTACGGGAAG
1 TTGGTTACGAGAAG
32665904 TTGGTTACGAGAAG
1 TTGGTTACGAGAAG
32665918 TT
1 TT
32665920 TAGCAAAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.23, C:0.07, G:0.37, T:0.33
Consensus pattern (14 bp):
TTGGTTACGAGAAG
Found at i:32668425 original size:34 final size:34
Alignment explanation
Indices: 32668377--32668441 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
32668367 TATTGCATTT
*
32668377 CTGTTACTGTTACTGAATTGGGCTAAGGCCCACA
1 CTGTTACTGATACTGAATTGGGCTAAGGCCCACA
*
32668411 CTGTTACTGATACTGTATTGGGCTAAGGCCC
1 CTGTTACTGATACTGAATTGGGCTAAGGCCC
32668442 TAACTGATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.31
Consensus pattern (34 bp):
CTGTTACTGATACTGAATTGGGCTAAGGCCCACA
Found at i:32669918 original size:45 final size:43
Alignment explanation
Indices: 32669866--32670065 Score: 212
Period size: 43 Copynumber: 4.7 Consensus size: 43
32669856 TGTGTTTTCG
*
32669866 TGTAAGACCACGTCTGGGACGTTGGCATCGATATATGTGTTTACA
1 TGTAAGACCACGTCTGGGACGTTGGCATCG--ATATGTGATTACA
* *
32669911 TGTAAGACCACGTCTGGGACGTTGGCATTGATATGTGGTTACGA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTAC-A
* * * * *
32669955 -GTAAGACCATGTCTGGGACATCGGCATCG-TATTTGATT-CG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACA
** * *
32669995 TGTAAGACCGTGTCTGGGACAG-TGGCATCGATATGAT-ATAAAA
1 TGTAAGACCACGTCTGGGAC-GTTGGCATCGATATG-TGATTACA
32670038 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
32670066 TGTTTGATAT
Statistics
Matches: 130, Mismatches: 18, Indels: 16
0.79 0.11 0.10
Matches are distributed among these distances:
41 26 0.20
42 13 0.10
43 61 0.47
44 1 0.01
45 29 0.22
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.28
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACA
Found at i:32670065 original size:84 final size:88
Alignment explanation
Indices: 32669866--32670065 Score: 225
Period size: 84 Copynumber: 2.3 Consensus size: 88
32669856 TGTGTTTTCG
*
32669866 TGTAAGACCACGTCTGGGACGTTGGCATCGATATATGTGTTTACATGTAAGACCACGTCTGGGAC
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATATGTGATTACATGTAAGACCACGTCTGGGAC
* * **
32669931 GTTGGCATTGATATGTGGTTACGA
66 GTTGGCATCGATATGT-GATAAAA
* * * * **
32669955 -GTAAGACCATGTCTGGGACATCGGCATCG-TAT-T-TGATT-CGTGTAAGACCGTGTCTGGGAC
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATATGTGATTACATGTAAGACCACGTCTGGGAC
32670015 AG-TGGCATCGATATGAT-ATAAAA
66 -GTTGGCATCGATATG-TGATAAAA
32670038 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
32670066 TGTTTGATAT
Statistics
Matches: 94, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
83 3 0.03
84 55 0.59
85 6 0.06
86 1 0.01
87 3 0.03
88 26 0.28
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.28
Consensus pattern (88 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATATGTGATTACATGTAAGACCACGTCTGGGAC
GTTGGCATCGATATGTGATAAAA
Found at i:32684899 original size:40 final size:40
Alignment explanation
Indices: 32684832--32685008 Score: 182
Period size: 40 Copynumber: 4.5 Consensus size: 40
32684822 ACCCAAGTAT
*
32684832 CTTCGGGAT-TTAG-CCGGATATAACAACTCACACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCACACAAATGC
* *
32684871 CCTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCACACAAATGC
* * * *
32684911 CTTCGGGTCTTAACCTGGATATAATC-ACT-AGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCA-CACAAATGC
* * *
32684951 CTTCGGGACATAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCACACAAATGC
* * *
32684991 CTTCAGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
32685009 TTATCATCCG
Statistics
Matches: 111, Mismatches: 21, Indels: 11
0.78 0.15 0.08
Matches are distributed among these distances:
38 1 0.01
39 12 0.11
40 96 0.86
41 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCACACAAATGC
Found at i:32690201 original size:40 final size:40
Alignment explanation
Indices: 32690120--32690262 Score: 211
Period size: 40 Copynumber: 3.6 Consensus size: 40
32690110 TATTTGGATG
32690120 ATATCCGGGCTAAGACCCGAAGGCATTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCA-TTTGTGCTAGTGACT
32690161 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
** *
32690201 ATATCTTGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
32690241 ATATCC-GGCTAA-ATCCCGAAGG
1 ATATCCGGGCTAAGA-CCCGAAGG
32690263 TACTTGGGTT
Statistics
Matches: 96, Mismatches: 4, Indels: 6
0.91 0.04 0.06
Matches are distributed among these distances:
38 1 0.01
39 14 0.15
40 54 0.56
41 27 0.28
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:32692479 original size:18 final size:18
Alignment explanation
Indices: 32692441--32692479 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
32692431 GTGTGGACTA
*
32692441 CCCGTGTGGACCCACATG
1 CCCGTGTGGACCCACAGG
32692459 CCCGTGTGG-CCCACACGG
1 CCCGTGTGGACCCACA-GG
32692477 CCC
1 CCC
32692480 AAATCAGTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.13, C:0.46, G:0.28, T:0.13
Consensus pattern (18 bp):
CCCGTGTGGACCCACAGG
Found at i:32693667 original size:359 final size:360
Alignment explanation
Indices: 32693007--32693714 Score: 1409
Period size: 359 Copynumber: 2.0 Consensus size: 360
32692997 TCGAACCCTG
32693007 AAACAGGGGAGACTTTAACTAATAAACTGTACTAATTGGCCTGACCAAAAATTCTAAAAAAAAAT
1 AAACAGGGGAGACTTTAACTAATAAACTGTACTAATTGGCCTGACCAAAAATTCTAAAAAAAAAT
32693072 TTGTAGATGGATATATGAGTCTAGTTTCAGAAAAAATTTACAGAATCAGTTTTTGAGTTTTGGAA
66 TTGTAGATGGATATATGAGTCTAGTTTCAGAAAAAATTTACAGAATCAGTTTTTGAGTTTTGGAA
32693137 CTCAAGATAAGATTTTTAAAGTGACTGTGATGCAGTTAGCCAGCTTGTCTGGAAATTTTAAAATG
131 CTCAAGATAAGATTTTTAAAGTGACTGTGATGCAGTTAGCCAGCTTGTCTGGAAATTTTAAAATG
32693202 AACTGTGTAAATAAATGAATTAAGTCCGTTAACACCTCGTGTTCGACTCCAGCAACAGTCTCGGG
196 AACTGTGTAAATAAATGAATTAAGTCCGTTAACACCTCGTGTTCGACTCCAGCAACAGTCTCGGG
32693267 TTCAGGGCGTTACAGTAAAAGTCTAAAAACTGTGGTCACCATCGAGTCCTCCACCGCACCGACCC
261 TTCAGGGCGTTACAGTAAAAGTCTAAAAACTGTGGTCACCATCGAGTCCTCCACCGCACCGACCC
32693332 TTCTAGGTCTGGGGATTACCTGTGTAGATAAGACA
326 TTCTAGGTCTGGGGATTACCTGTGTAGATAAGACA
32693367 AAACAGGGGAGACTTTAACTAATAAACTGTACTAATTGGCCTGACCAAAAATTCT-AAAAAAAAT
1 AAACAGGGGAGACTTTAACTAATAAACTGTACTAATTGGCCTGACCAAAAATTCTAAAAAAAAAT
32693431 TTGTAGATGGATATATGAGTCTAGTTTCAGAAAAAATTTACAGAATCAGTTTTTGAGTTTTGGAA
66 TTGTAGATGGATATATGAGTCTAGTTTCAGAAAAAATTTACAGAATCAGTTTTTGAGTTTTGGAA
32693496 CTCAAGATAAGATTTTTAAAGTGACTGTGATGCAGTTAGCCAGCTTGTCTGGAAATTTTAAAATG
131 CTCAAGATAAGATTTTTAAAGTGACTGTGATGCAGTTAGCCAGCTTGTCTGGAAATTTTAAAATG
32693561 AACTGTGTAAATAAATGAATTAAGTCCGTTAACACCTCGTGTTCGACTCCAGCAACAGTCTCGGG
196 AACTGTGTAAATAAATGAATTAAGTCCGTTAACACCTCGTGTTCGACTCCAGCAACAGTCTCGGG
32693626 TTCAGGGCGTTACAGTAAAAGTCTAAAAACTGTGGTCACCATCGAGTCCTCCACCGCACCGACCC
261 TTCAGGGCGTTACAGTAAAAGTCTAAAAACTGTGGTCACCATCGAGTCCTCCACCGCACCGACCC
32693691 TTCTAGGTCTGGGGATTACCTGTG
326 TTCTAGGTCTGGGGATTACCTGTG
32693715 GTCACCATCG
Statistics
Matches: 348, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
359 293 0.84
360 55 0.16
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (360 bp):
AAACAGGGGAGACTTTAACTAATAAACTGTACTAATTGGCCTGACCAAAAATTCTAAAAAAAAAT
TTGTAGATGGATATATGAGTCTAGTTTCAGAAAAAATTTACAGAATCAGTTTTTGAGTTTTGGAA
CTCAAGATAAGATTTTTAAAGTGACTGTGATGCAGTTAGCCAGCTTGTCTGGAAATTTTAAAATG
AACTGTGTAAATAAATGAATTAAGTCCGTTAACACCTCGTGTTCGACTCCAGCAACAGTCTCGGG
TTCAGGGCGTTACAGTAAAAGTCTAAAAACTGTGGTCACCATCGAGTCCTCCACCGCACCGACCC
TTCTAGGTCTGGGGATTACCTGTGTAGATAAGACA
Found at i:32695535 original size:21 final size:20
Alignment explanation
Indices: 32695505--32695547 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
32695495 TAATATTGGT
* *
32695505 AAGTGGATTAGAAAATAAAAG
1 AAGTGAATTA-AAAAGAAAAG
32695526 AAGTGAATTAAAAAGAAAAG
1 AAGTGAATTAAAAAGAAAAG
32695546 AA
1 AA
32695548 AGGATGAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.63, C:0.00, G:0.21, T:0.16
Consensus pattern (20 bp):
AAGTGAATTAAAAAGAAAAG
Found at i:32708991 original size:39 final size:40
Alignment explanation
Indices: 32708890--32709074 Score: 193
Period size: 40 Copynumber: 4.7 Consensus size: 40
32708880 TCGAATGATG
* *
32708890 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCGT-A-
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTA-C-TAAT
* *
32708930 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
32708970 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
32709009 TCCAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
32709048 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
32709075 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 16, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
38 1 0.01
39 36 0.30
40 77 0.63
41 8 0.07
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:32709096 original size:79 final size:79
Alignment explanation
Indices: 32708943--32709107 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
32708933 GGACTAAGAT
* **
32708943 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
32709008 ATCCAGGTTAAGTC
66 ATCCAGGTTAAATC
* * *
32709022 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
32709085 TATATCC-GGTTAAATT
63 TAAATCCAGGTTAAATC
32709101 CCGAAGG
1 CCGAAGG
32709108 TACGTGATTC
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCAGGTTAAATC
Found at i:32710540 original size:26 final size:26
Alignment explanation
Indices: 32710511--32710570 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
32710501 TCCCTTTGAA
* * *
32710511 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
32710537 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
*
32710565 CCATTC
1 TCATTC
32710571 TCAATATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:32710556 original size:28 final size:28
Alignment explanation
Indices: 32710525--32710596 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
32710515 TCGATATTTT
*
32710525 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
32710553 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
32710581 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
32710597 ATTTGATTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:32713530 original size:68 final size:68
Alignment explanation
Indices: 32713451--32713609 Score: 191
Period size: 67 Copynumber: 2.4 Consensus size: 68
32713441 GAGTGCACAT
* * * *
32713451 CATGTATACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TG
1 CATGTAGACAAGAGAGCTACAAGACA-TAT-ACGTAGCTAGGTCGCATGCGTGATACTAGTGAAG
*
32713514 TACAC
64 GACAC
* * *
32713519 CATGTAGACAAGAGAGCTAC-AG-GATATACGTAGCTAGGTCGCATGCGTGGTTCTAGGTGAAGG
1 CATGTAGACAAGAGAGCTACAAGACATATACGTAGCTAGGTCGCATGCGTGATACTA-GTGAAGG
32713582 ACAC
65 ACAC
32713586 CATGTAGACAAGAGAGCTACAAGA
1 CATGTAGACAAGAGAGCTACAAGA
32713610 TAAATTGGCT
Statistics
Matches: 78, Mismatches: 8, Indels: 9
0.82 0.08 0.09
Matches are distributed among these distances:
64 24 0.31
65 3 0.04
66 3 0.04
67 27 0.35
68 21 0.27
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.22
Consensus pattern (68 bp):
CATGTAGACAAGAGAGCTACAAGACATATACGTAGCTAGGTCGCATGCGTGATACTAGTGAAGGA
CAC
Found at i:32715780 original size:53 final size:54
Alignment explanation
Indices: 32715712--32716027 Score: 354
Period size: 55 Copynumber: 5.9 Consensus size: 54
32715702 TTTCCTTTTT
* * * * *
32715712 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* *
32715765 GAACTCACCAATGCCATGCCTTAGA-ATGGTCTTACATGAGA-CATTTGCCTTATA
1 GAACTCACCAATGCCATGCCTT-GACATGGTCTTACATGATATC-CTTGCCTTATA
* * * *
32715819 GTAACTCATCAATCCCATGTCATGACATGGTCTTACATGATATCCTTGCCTTAT-
1 G-AACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* **
32715873 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGCA-CCTTTGCCTTATA
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCC-TTGCCTTATA
* * * *
32715927 GTAACTCATCAATGTCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATA
1 G-AACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* * * *
32715982 AAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTT
32716028 ATCTTACCAA
Statistics
Matches: 220, Mismatches: 33, Indels: 19
0.81 0.12 0.07
Matches are distributed among these distances:
52 3 0.01
53 83 0.38
54 47 0.21
55 84 0.38
56 3 0.01
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.34
Consensus pattern (54 bp):
GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
Found at i:32715920 original size:108 final size:108
Alignment explanation
Indices: 32715725--32716020 Score: 459
Period size: 108 Copynumber: 2.7 Consensus size: 108
32715715 CTTACCATTG
* * * *
32715725 CCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTAGA
1 CCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGC
32715790 ATGGTCTTACATGAGACATTTGCCTTATAGTAACTCATCAATC
66 ATGGTCTTACATGAGACATTTGCCTTATAGTAACTCATCAATC
*
32715833 CCATGTCATGACATGGTCTTACATGATATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGC
1 CCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGC
* *
32715898 ATGGTCTTACATG-GCACCTTTGCCTTATAGTAACTCATCAATG
66 ATGGTCTTACATGAG-ACATTTGCCTTATAGTAACTCATCAATC
* * * * *
32715941 TCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAAAACTTATCAATGCCATGCCTTGG
1 CCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAT-GAACTCACCAATGCCATGCCTTGG
32716006 CATGGTCTTACATGA
65 CATGGTCTTACATGA
32716021 TATCCTTATC
Statistics
Matches: 172, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
107 1 0.01
108 136 0.79
109 35 0.20
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.34
Consensus pattern (108 bp):
CCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGC
ATGGTCTTACATGAGACATTTGCCTTATAGTAACTCATCAATC
Found at i:32716122 original size:47 final size:47
Alignment explanation
Indices: 32716006--32716127 Score: 183
Period size: 47 Copynumber: 2.6 Consensus size: 47
32715996 CATGCCTTGG
*
32716006 CATGGTCTTACA-TGATATCCTTATCTTACCAAATGACATGTTCCAAA
1 CATGGTCTTACATTG-TATCCTTGTCTTACCAAATGACATGTTCCAAA
* *
32716053 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATTGTATCCTTGTCTTACCAAATGACATGTTCCAAA
* *
32716100 CCTGGTCTTACATTGTACCCTTGTCTTA
1 CATGGTCTTACATTGTATCCTTGTCTTA
32716128 GTGCCAATGC
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
47 67 0.99
48 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATTGTATCCTTGTCTTACCAAATGACATGTTCCAAA
Found at i:32728947 original size:16 final size:16
Alignment explanation
Indices: 32728926--32728968 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
32728916 GTAGATCGGT
*
32728926 AAAAGCCGAAATGCGA
1 AAAAGCCGAAATGCCA
*
32728942 AAAAGCTGAAATGCCA
1 AAAAGCCGAAATGCCA
32728958 AAAAGCCGAAA
1 AAAAGCCGAAA
32728969 GTTTGGCTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.53, C:0.19, G:0.21, T:0.07
Consensus pattern (16 bp):
AAAAGCCGAAATGCCA
Found at i:32729228 original size:29 final size:28
Alignment explanation
Indices: 32729187--32729266 Score: 117
Period size: 29 Copynumber: 2.8 Consensus size: 28
32729177 GACTGTAAAA
32729187 GTGATTGGGCCTAGTGGGCCATAT-AGAT
1 GTGATTGGGCCTAGTGGGCCATATGA-AT
*
32729215 GTGATTTGGGCCTAATGGGCCATATGAAT
1 GTGA-TTGGGCCTAGTGGGCCATATGAAT
*
32729244 GAGATTGGGCCTAGTGGGCCATA
1 GTGATTGGGCCTAGTGGGCCATA
32729267 AGCATGTATG
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
28 22 0.47
29 24 0.51
30 1 0.02
ACGTcount: A:0.23, C:0.15, G:0.35, T:0.28
Consensus pattern (28 bp):
GTGATTGGGCCTAGTGGGCCATATGAAT
Found at i:32752345 original size:104 final size:104
Alignment explanation
Indices: 32752224--32752447 Score: 351
Period size: 104 Copynumber: 2.2 Consensus size: 104
32752214 AATGGATATC
* *
32752224 GCACTTAGCAACCCCTCGTGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGAACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
32752289 GGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATCA-CGCACATAGCACCACCAATAAACCGGGGAATCA
32752328 GCACTTAGCAACCCCTCGGGGGAATCAGAACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGAACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* * *
32752393 GGATCACGTACATAGCACCACCCATAAATCGGGGAATCA
66 GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
**
32752432 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
32752448 TTTATATACA
Statistics
Matches: 110, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
104 109 0.99
105 1 0.01
ACGTcount: A:0.32, C:0.31, G:0.19, T:0.19
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGAACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:32752809 original size:29 final size:29
Alignment explanation
Indices: 32752776--32752839 Score: 85
Period size: 30 Copynumber: 2.2 Consensus size: 29
32752766 TAATCCACCA
32752776 CCCAACTTTTTG-AAAATTACAATTTTGTC
1 CCCAAC-TTTTGCAAAATTACAATTTTGTC
* *
32752805 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGTC
32752835 CCCAA
1 CCCAA
32752840 GCTCGGAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
29 10 0.32
30 21 0.68
ACGTcount: A:0.30, C:0.27, G:0.06, T:0.38
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGTC
Found at i:32752813 original size:30 final size:30
Alignment explanation
Indices: 32752783--32752839 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
32752773 CCACCCAACT
32752783 TTTTG-AAAATTACAATTTTGTCCCCAAAC
1 TTTTGCAAAATTACAATTTTGTCCCCAAAC
* *
32752812 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGTCCCCAA
32752840 GCTCGGAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 5 0.20
30 20 0.80
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGTCCCCAAAC
Found at i:32758103 original size:104 final size:104
Alignment explanation
Indices: 32757981--32758204 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
32757971 AATGGATATC
32757981 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
32758046 GGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATCA-CGCACATAGCACCACCAATAAACCGGGGAATCA
32758085 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
32758150 GGATCACGCACATAGCACCACCCATAAATCGGGGAATCA
66 GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
**
32758189 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
32758205 TTTATATACA
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:32758566 original size:29 final size:29
Alignment explanation
Indices: 32758533--32758596 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
32758523 TAATCCACCA
32758533 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
32758562 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
32758592 CCCAA
1 CCCAA
32758597 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:32758570 original size:30 final size:30
Alignment explanation
Indices: 32758540--32758596 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
32758530 CCACCCAACT
32758540 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
32758569 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
32758597 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:32761155 original size:597 final size:598
Alignment explanation
Indices: 32760022--32761795 Score: 3104
Period size: 597 Copynumber: 3.0 Consensus size: 598
32760012 GTTTGGTATG
* *
32760022 ATTTGGTTTTGAAAAATATAATTTTGCAAATATGTTGAGTGTGGATAATGGAATGACATGATTTG
1 ATTTGGTTTGGAAAAATATAATTTTGCAAATACGTTGAGTGTGGATAATGGAATGACATGATTTG
* *
32760087 GCCATGTTTGTAGAT-TTTTGGTTGCCTAAATATGCCATTAAGATTGTCGGTGTGTATGTGCAAA
66 GCCTTGTTTGTAGATGTTTTGGTTGCCTAAATAAGCCATTAAGATTGTCGGTGTGTATGTGCAAA
** *
32760151 TGAGTGTAATATCCCGAATTAGGGTCTAGTCAGAACAGTGATTTTGAGACCACAAATTTGAAATA
131 TGAGTGTAATATCTTGAATTAGGGTCTAGTCAGAACAGTGATTTTGAGACCACAAATTTGAAATG
*
32760216 GAATTAATTATTTATGATTATTATTAGAAAAGCAAATAAGAAGTCTGCCGTGTGGCACGTTTTTG
196 GAATTAATTATTTATGATTATTATTAGAAAAACAAATAAGAAGTCTGCCGTGTGGCACGTTTTTG
*
32760281 TCTGTCTTCTATGACACGCTGTGGTTTTGTTTTCTCTTTAGATTTCTCCTGTTTTACTTACTTTC
261 TCTGTCTTCTATGACACGCTGTGGTTTTGTTTTCTCTTTAGATTTCTCCTGTTTTACTTGCTTTC
* *
32760346 TTGCTCCCTGTAGTTCTGTGCTGTTCGTGTTTCCTTGATTGAGTTCGGTCATTTGTTTTCTTGCA
326 TTGCTCCCTATAGTTCTGTGCTGTTCGTGTTTCCTTGATTGAGTTCGGTCATTTGTTTTCTTGCG
*
32760411 TAAGAAGATGGAGCAAGATTTGGCGTAACTAAGTTTAGATGATGGCGAAGAAGAGGCGTTCTCTA
391 TAAGAAGATGGAGCAAGATTTGGCGGAACTAAGTTTAGATGATGGCGAAGAAGAGGCGTTCTCTA
* *
32760476 TACCGGTGGATGTGGGAGAACAAAATGCCATGTTTAGTTTTTGCTTGGTGGGTTGTTTTCTTACT
456 TACCAGTGGATGTGGGAGAACAAAATGCCATGTATAGTTTTTGCTTGGTGGGTTGTTTTCTTACT
32760541 GCAAGTGTGGTGAATTTTCCAGCAATGAGGAATACTATGGCTAATATTTGGCATCCTTT-AGAGA
521 GCAAGTGTGGTGAATTTTCCAGCAATGAGGAATACTATGGCTAATATTTGGCATCCTTTGA-AGA
32760605 ATACTATGGCTAAT
585 ATACTATGGCTAAT
32760619 ATTTGGTTTGGAAAAATATAATTTTGCAAATACGTTGAGTGTGGATAATGGAATGACATGATTTG
1 ATTTGGTTTGGAAAAATATAATTTTGCAAATACGTTGAGTGTGGATAATGGAATGACATGATTTG
*
32760684 GCTTTGTTTGTAGATGTTTTGGTTGCCTAAATAAGCCATTAAGATTGTCGGTGTGTATGTGCAAA
66 GCCTTGTTTGTAGATGTTTTGGTTGCCTAAATAAGCCATTAAGATTGTCGGTGTGTATGTGCAAA
* * * *
32760749 TGAGTGTAATATCTTGAATTAAGGTCTAGTCGGAACAGTAATTTTGAAACCACAAATTTGAAATG
131 TGAGTGTAATATCTTGAATTAGGGTCTAGTCAGAACAGTGATTTTGAGACCACAAATTTGAAATG
* * * * *
32760814 GAGTTAATTAATTATGATTATTATTAGAAAAATAAATAAGAAGTCTACCGTGTGGCACGTTTTTT
196 GAATTAATTATTTATGATTATTATTAGAAAAACAAATAAGAAGTCTGCCGTGTGGCACGTTTTTG
*
32760879 TTTGTCTTCTATGACACGCTGTGGTTTT-TTTTCTCTTTAGATTTCTCCTGTTTTACTTGCTTTC
261 TCTGTCTTCTATGACACGCTGTGGTTTTGTTTTCTCTTTAGATTTCTCCTGTTTTACTTGCTTTC
*
32760943 TTGCTCCCTATAGTTCTGTGCTGTTCGTGTTTCCTTGATTGAGTTTGGTCATTTGTTTTCTTGCG
326 TTGCTCCCTATAGTTCTGTGCTGTTCGTGTTTCCTTGATTGAGTTCGGTCATTTGTTTTCTTGCG
* * *
32761008 TAAGAAGATGGAGTAAGATTTGGCGGAACTAAGTTTAGATGATGGTGAAGAAAAGGCGTTCTCTA
391 TAAGAAGATGGAGCAAGATTTGGCGGAACTAAGTTTAGATGATGGCGAAGAAGAGGCGTTCTCTA
* **
32761073 TACCAGTGGATGTGGGAGAACAAAATGCCATGTATAGTTTTTGCTTGCTATGTTGTTTTCTTACT
456 TACCAGTGGATGTGGGAGAACAAAATGCCATGTATAGTTTTTGCTTGGTGGGTTGTTTTCTTACT
* *
32761138 GCAAGTGTGGTGAATTTTCCAACAATGAGGAATACTATGGCTAATATTTGGCCTCCTTTGAAGAA
521 GCAAGTGTGGTGAATTTTCCAGCAATGAGGAATACTATGGCTAATATTTGGCATCCTTTGAAGAA
32761203 TACTATGGCTAAT
586 TACTATGGCTAAT
32761216 ATTTGGTTTGGAAAAATATAATTTTGCAAATACGTTGAGTGTGGATAATGGAATGACATGATTTG
1 ATTTGGTTTGGAAAAATATAATTTTGCAAATACGTTGAGTGTGGATAATGGAATGACATGATTTG
* *
32761281 GCCTTGTTTGTAGATGTTTTGGTTGCCTAAATAAGCCATTAAGATTGTCGGTGTGTATTTTCAAA
66 GCCTTGTTTGTAGATGTTTTGGTTGCCTAAATAAGCCATTAAGATTGTCGGTGTGTATGTGCAAA
32761346 TGAGTGTAATATCTTGAATTAGGGTCTAGTCAGAACAGTGATTTTGAGACCACAAATTTGAAATG
131 TGAGTGTAATATCTTGAATTAGGGTCTAGTCAGAACAGTGATTTTGAGACCACAAATTTGAAATG
*
32761411 GAATTAATTATTTATGATTATTATTAGAAAAACAAATAAGAAGTGTGCCGTGTGGCACGTTTTTG
196 GAATTAATTATTTATGATTATTATTAGAAAAACAAATAAGAAGTCTGCCGTGTGGCACGTTTTTG
* * *
32761476 TCCGTCTTCTATGACACGCTATGGTTTTGTTTTCTCTTTAGATTTCTCCTATTTTACTTGCTTTC
261 TCTGTCTTCTATGACACGCTGTGGTTTTGTTTTCTCTTTAGATTTCTCCTGTTTTACTTGCTTTC
* *
32761541 ATACTCCCTATAGTTCTGTGCTGTTCGTGTTTCCTTGATTGAGTTCGGTCATTTGTTTTCTTGCG
326 TTGCTCCCTATAGTTCTGTGCTGTTCGTGTTTCCTTGATTGAGTTCGGTCATTTGTTTTCTTGCG
* *
32761606 TAAGAAGATAGAGCAAGATTTGGCGGGACTAAGTTTAGATGATGGCGAAGAAGAGGCGTTCTCTA
391 TAAGAAGATGGAGCAAGATTTGGCGGAACTAAGTTTAGATGATGGCGAAGAAGAGGCGTTCTCTA
32761671 TACCAGTGGATGTGGGAGAACAAAATGCCATGTATAGTTTTTGCTTGGTGGGTTGTTTTCTTACT
456 TACCAGTGGATGTGGGAGAACAAAATGCCATGTATAGTTTTTGCTTGGTGGGTTGTTTTCTTACT
* *
32761736 GCAAGTGTGGTGAATTTTCTAGCAATTAGGAATACTATGGCTAATATTTGGCATCCTTTG
521 GCAAGTGTGGTGAATTTTCCAGCAATGAGGAATACTATGGCTAATATTTGGCATCCTTTG
32761796 GAGGGCGTGC
Statistics
Matches: 1108, Mismatches: 66, Indels: 5
0.94 0.06 0.00
Matches are distributed among these distances:
597 640 0.58
598 468 0.42
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (598 bp):
ATTTGGTTTGGAAAAATATAATTTTGCAAATACGTTGAGTGTGGATAATGGAATGACATGATTTG
GCCTTGTTTGTAGATGTTTTGGTTGCCTAAATAAGCCATTAAGATTGTCGGTGTGTATGTGCAAA
TGAGTGTAATATCTTGAATTAGGGTCTAGTCAGAACAGTGATTTTGAGACCACAAATTTGAAATG
GAATTAATTATTTATGATTATTATTAGAAAAACAAATAAGAAGTCTGCCGTGTGGCACGTTTTTG
TCTGTCTTCTATGACACGCTGTGGTTTTGTTTTCTCTTTAGATTTCTCCTGTTTTACTTGCTTTC
TTGCTCCCTATAGTTCTGTGCTGTTCGTGTTTCCTTGATTGAGTTCGGTCATTTGTTTTCTTGCG
TAAGAAGATGGAGCAAGATTTGGCGGAACTAAGTTTAGATGATGGCGAAGAAGAGGCGTTCTCTA
TACCAGTGGATGTGGGAGAACAAAATGCCATGTATAGTTTTTGCTTGGTGGGTTGTTTTCTTACT
GCAAGTGTGGTGAATTTTCCAGCAATGAGGAATACTATGGCTAATATTTGGCATCCTTTGAAGAA
TACTATGGCTAAT
Found at i:32788276 original size:34 final size:34
Alignment explanation
Indices: 32788215--32788301 Score: 88
Period size: 34 Copynumber: 2.6 Consensus size: 34
32788205 TGTAGTGAGT
*
32788215 TGGGCTAAGGCTCACACTGAAACTGCTACTG-TAA
1 TGGGCTAAGGCCCACACTGAAACTGCTACTGAT-A
* ** *
32788249 TGGGCTAAGGCCCATACTGGTATTGCTACTGATA
1 TGGGCTAAGGCCCACACTGAAACTGCTACTGATA
*
32788283 TGGGCTTAA-GCCCAGACTG
1 TGGGC-TAAGGCCCACACTG
32788302 TACGACACTG
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
34 41 0.91
35 4 0.09
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (34 bp):
TGGGCTAAGGCCCACACTGAAACTGCTACTGATA
Found at i:32795801 original size:824 final size:824
Alignment explanation
Indices: 32794214--32795863 Score: 3273
Period size: 824 Copynumber: 2.0 Consensus size: 824
32794204 GTTAATTAAC
32794214 ATTATTAACTAAATGCATTTTACTTACTCAAATGACCAACTCATCATCCATAGATCATAGTCATA
1 ATTATTAACTAAATGCATTTTACTTACTCAAATGACCAACTCATCATCCATAGATCATAGTCATA
*
32794279 TTTTTCTATCACATTTAGTAGCAAATAAACCAATTACACAAGCAATAATATGTTCATAACATAAC
66 TTTTTCTATCACATTTAGTACCAAATAAACCAATTACACAAGCAATAATATGTTCATAACATAAC
32794344 TTATATAAACTTGTCACAACTGAAACCATATCCTTCAGTACATTATCATTGCACAAACTGATTCA
131 TTATATAAACTTGTCACAACTGAAACCATATCCTTCAGTACATTATCATTGCACAAACTGATTCA
32794409 TTACCATCCACAAATGCAAACTATGCCATAAAACAAACTTACATAAATGAGCTAATTGTTAAACC
196 TTACCATCCACAAATGCAAACTATGCCATAAAACAAACTTACATAAATGAGCTAATTGTTAAACC
32794474 GATTATACATTATAATTTTTACTTCTCATTGCCGAATCATTTAACTAAATATCACAAACATATTT
261 GATTATACATTATAATTTTTACTTCTCATTGCCGAATCATTTAACTAAATATCACAAACATATTT
32794539 TCTAAGAACATACTTACCAGAATATGCTTATCTCATGTTAAATTTCTAAATCATCAATTAACCTA
326 TCTAAGAACATACTTACCAGAATATGCTTATCTCATGTTAAATTTCTAAATCATCAATTAACCTA
32794604 ATAATCAAGCCGAACCATTTAGCCAAATACCACACATATATGCACCATGAAATATACTTTATTAA
391 ATAATCAAGCCGAACCATTTAGCCAAATACCACACATATATGCACCATGAAATATACTTTATTAA
32794669 CAAGCCTATGTCAAGACCGAATACATATAAGCATTAATATCAAGTTTAATCCATTTTCGCATGGC
456 CAAGCCTATGTCAAGACCGAATACATATAAGCATTAATATCAAGTTTAATCCATTTTCGCATGGC
32794734 TAAATATATACACATTCAAAATAACTAACACATAGACTAGCCCATACATGTCATAAGTTCGAGTT
521 TAAATATATACACATTCAAAATAACTAACACATAGACTAGCCCATACATGTCATAAGTTCGAGTT
32794799 TAACTTATAAAGTATAGAAAATAGTTGATAGTGTGATAGACTTTGTTGACGATCCCAAAGCTTGT
586 TAACTTATAAAGTATAGAAAATAGTTGATAGTGTGATAGACTTTGTTGACGATCCCAAAGCTTGT
32794864 AACTTGATTCCGAAATCTATAAAACAGAGACAAACATACACACACAGTAAGCTATCATAGCTTAG
651 AACTTGATTCCGAAATCTATAAAACAGAGACAAACATACACACACAGTAAGCTATCATAGCTTAG
32794929 TAAGTTATAAGCAACTAACAACTCAAAGACATTATCAACTCATTTTGACCACACCAAATTATAAT
716 TAAGTTATAAGCAACTAACAACTCAAAGACATTATCAACTCATTTTGACCACACCAAATTATAAT
32794994 ATCATAATCACATTTAGTCTCAAGCTTAATGTTTCATATATAAT
781 ATCATAATCACATTTAGTCTCAAGCTTAATGTTTCATATATAAT
32795038 ATTATTAACTAAATGCATTTTACTTACTCAAATGACCAACTCATCATCCATAGATCATAGTCATA
1 ATTATTAACTAAATGCATTTTACTTACTCAAATGACCAACTCATCATCCATAGATCATAGTCATA
32795103 TTTTTCTATCACATTTAGTACCAAATAAACCAATTACACAAGCAATAATATGTTCATAACATAAC
66 TTTTTCTATCACATTTAGTACCAAATAAACCAATTACACAAGCAATAATATGTTCATAACATAAC
*
32795168 TTATATAAACTTGTCACAACTGAAACCATATCCTTGAGTACATTATCATTGCACAAACTGATTCA
131 TTATATAAACTTGTCACAACTGAAACCATATCCTTCAGTACATTATCATTGCACAAACTGATTCA
32795233 TTACCATCCACAAATGCAAACTATGCCATAAAACAAACTTACATAAATGAGCTAATTGTTAAACC
196 TTACCATCCACAAATGCAAACTATGCCATAAAACAAACTTACATAAATGAGCTAATTGTTAAACC
32795298 GATTATACATTATAATTTTTACTTCTCATTGCCGAATCATTTAACTAAATATCACAAACATATTT
261 GATTATACATTATAATTTTTACTTCTCATTGCCGAATCATTTAACTAAATATCACAAACATATTT
32795363 TCTAAGAACATACTTACCAGAATATGCTTATCTCATGTTAAATTTCTAAATCATCAATTAACCTA
326 TCTAAGAACATACTTACCAGAATATGCTTATCTCATGTTAAATTTCTAAATCATCAATTAACCTA
32795428 ATAATCAAGCCGAACCATTTAGCCAAATACCACACATATATGCACCATGAAATATACTTTATTAA
391 ATAATCAAGCCGAACCATTTAGCCAAATACCACACATATATGCACCATGAAATATACTTTATTAA
32795493 CAAGCCTATGTCAAGACCGAATACATATAAGCATTAATATCAAGTTTAATCCATTTTCGCATGGC
456 CAAGCCTATGTCAAGACCGAATACATATAAGCATTAATATCAAGTTTAATCCATTTTCGCATGGC
32795558 TAAATATATACACATTCAAAATAACTAACACATAGACTAGCCCATACATGTCATAAGTTCGAGTT
521 TAAATATATACACATTCAAAATAACTAACACATAGACTAGCCCATACATGTCATAAGTTCGAGTT
*
32795623 TAACTTATAAAGTATAGAAAATAGTTGATATTGTGATAGACTTTGTTGACGATCCCAAAGCTTGT
586 TAACTTATAAAGTATAGAAAATAGTTGATAGTGTGATAGACTTTGTTGACGATCCCAAAGCTTGT
32795688 AACTTGATTCCGAAATCTATAAAACAGAGACAAACATACACACACAGTAAGCTATCATAGCTTAG
651 AACTTGATTCCGAAATCTATAAAACAGAGACAAACATACACACACAGTAAGCTATCATAGCTTAG
32795753 TAAGTTATAAGCAACTAACAACTCAAAGACATTATCAACTCATTTTGACCACACCAAATTATAAT
716 TAAGTTATAAGCAACTAACAACTCAAAGACATTATCAACTCATTTTGACCACACCAAATTATAAT
32795818 ATCATAATCACATTTAGTCTCAAGCTTAATGTTTCATATATAAT
781 ATCATAATCACATTTAGTCTCAAGCTTAATGTTTCATATATAAT
32795862 AT
1 AT
32795864 ATACTTTCAT
Statistics
Matches: 823, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
824 823 1.00
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (824 bp):
ATTATTAACTAAATGCATTTTACTTACTCAAATGACCAACTCATCATCCATAGATCATAGTCATA
TTTTTCTATCACATTTAGTACCAAATAAACCAATTACACAAGCAATAATATGTTCATAACATAAC
TTATATAAACTTGTCACAACTGAAACCATATCCTTCAGTACATTATCATTGCACAAACTGATTCA
TTACCATCCACAAATGCAAACTATGCCATAAAACAAACTTACATAAATGAGCTAATTGTTAAACC
GATTATACATTATAATTTTTACTTCTCATTGCCGAATCATTTAACTAAATATCACAAACATATTT
TCTAAGAACATACTTACCAGAATATGCTTATCTCATGTTAAATTTCTAAATCATCAATTAACCTA
ATAATCAAGCCGAACCATTTAGCCAAATACCACACATATATGCACCATGAAATATACTTTATTAA
CAAGCCTATGTCAAGACCGAATACATATAAGCATTAATATCAAGTTTAATCCATTTTCGCATGGC
TAAATATATACACATTCAAAATAACTAACACATAGACTAGCCCATACATGTCATAAGTTCGAGTT
TAACTTATAAAGTATAGAAAATAGTTGATAGTGTGATAGACTTTGTTGACGATCCCAAAGCTTGT
AACTTGATTCCGAAATCTATAAAACAGAGACAAACATACACACACAGTAAGCTATCATAGCTTAG
TAAGTTATAAGCAACTAACAACTCAAAGACATTATCAACTCATTTTGACCACACCAAATTATAAT
ATCATAATCACATTTAGTCTCAAGCTTAATGTTTCATATATAAT
Found at i:32796311 original size:41 final size:43
Alignment explanation
Indices: 32796210--32796358 Score: 149
Period size: 43 Copynumber: 3.5 Consensus size: 43
32796200 CAATTCCAGC
* * *
32796210 GTCCCAGACATGGTCTTACATGCTATCACATATCAATGCCACT
1 GTCCCAGACATGGTCTTACATGCAATCACATATCGATGCCAAT
* * *
32796253 GTCCCAGATAGGGTCTTACATG-AATCAAATA-CGATGCCAAT
1 GTCCCAGACATGGTCTTACATGCAATCACATATCGATGCCAAT
* * * * * *
32796294 GTCCTAGACATGTTCTTACACGTAATCACATATCGATGCGAAC
1 GTCCCAGACATGGTCTTACATGCAATCACATATCGATGCCAAT
* * *
32796337 ATCCCAAACGTGGTCTTACATG
1 GTCCCAGACATGGTCTTACATG
32796359 AGAATAAATA
Statistics
Matches: 84, Mismatches: 20, Indels: 4
0.78 0.19 0.04
Matches are distributed among these distances:
41 25 0.30
42 15 0.18
43 44 0.52
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACATGCAATCACATATCGATGCCAAT
Found at i:32797219 original size:13 final size:13
Alignment explanation
Indices: 32797189--32797229 Score: 55
Period size: 13 Copynumber: 3.0 Consensus size: 13
32797179 TTTCTTTTTC
*
32797189 TTATATTTTTATA
1 TTATGTTTTTATA
32797202 TTATGTTTTTATA
1 TTATGTTTTTATA
32797215 TTATGGTTTATTATA
1 TTAT-GTTT-TTATA
32797230 ACATATATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 16 0.64
14 4 0.16
15 5 0.20
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.66
Consensus pattern (13 bp):
TTATGTTTTTATA
Found at i:32798623 original size:29 final size:29
Alignment explanation
Indices: 32798581--32798640 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
32798571 ATGATTTTGA
32798581 GTTATGCCATTATTGATAATGTGAGCTTT
1 GTTATGCCATTATTGATAATGTGAGCTTT
32798610 GTTATGCCATTATTGATAATGTGAGCTTT
1 GTTATGCCATTATTGATAATGTGAGCTTT
32798639 GT
1 GT
32798641 GAAGTTTGTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.23, C:0.10, G:0.22, T:0.45
Consensus pattern (29 bp):
GTTATGCCATTATTGATAATGTGAGCTTT
Found at i:32799413 original size:43 final size:42
Alignment explanation
Indices: 32799320--32799422 Score: 120
Period size: 43 Copynumber: 2.4 Consensus size: 42
32799310 TGTAAGATAA
* *
32799320 TGTCTGGGACGTTTGCATCATATTTGATTTCATGTAGGACCC
1 TGTCTGGGACGTTGGCATCATATTTGATTACATGTAGGACCC
* * *
32799362 TATTTGGGACAG-TGGCATCGATATTTGATTACATGTATGACCAC
1 TGTCTGGGAC-GTTGGCATC-ATATTTGATTACATGTAGGACC-C
32799406 -GTCTGGGACGTTGGCAT
1 TGTCTGGGACGTTGGCAT
32799423 TGTACAAGAT
Statistics
Matches: 50, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
42 15 0.30
43 34 0.68
44 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.26, T:0.35
Consensus pattern (42 bp):
TGTCTGGGACGTTGGCATCATATTTGATTACATGTAGGACCC
Found at i:32806770 original size:42 final size:43
Alignment explanation
Indices: 32806723--32806834 Score: 147
Period size: 43 Copynumber: 2.6 Consensus size: 43
32806713 TGTGTTATCG
* * * *
32806723 TGTAAGGCCACGTCTGGGACATTGGCATC-ATATTTGATTTCA
1 TGTAAGACCACGTCTAGGACATTGGCATCGATATATGATTACA
* *
32806765 TGTAAGACC-CTATCTAGGACAATGGCATCGATATATGATTACA
1 TGTAAGACCAC-GTCTAGGACATTGGCATCGATATATGATTACA
32806808 TGTAAGACCACGTCTAGGACATTGGCA
1 TGTAAGACCACGTCTAGGACATTGGCA
32806835 ATGTACGAGA
Statistics
Matches: 59, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
41 1 0.02
42 23 0.39
43 34 0.58
44 1 0.02
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (43 bp):
TGTAAGACCACGTCTAGGACATTGGCATCGATATATGATTACA
Found at i:32816649 original size:29 final size:29
Alignment explanation
Indices: 32816586--32816653 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
32816576 TAATCAACCG
32816586 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
32816615 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
32816644 CGCACACTTA
1 CGCACACTTA
32816654 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:32816765 original size:174 final size:174
Alignment explanation
Indices: 32816475--32816802 Score: 620
Period size: 174 Copynumber: 1.9 Consensus size: 174
32816465 AACTCAAGGT
* *
32816475 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
32816540 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
32816605 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
32816649 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
32816714 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
*
32816779 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
32816803 TGTACAATTT
Statistics
Matches: 150, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 150 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:32816794 original size:29 final size:30
Alignment explanation
Indices: 32816755--32816833 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
32816745 CTTAATAATC
32816755 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
32816785 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
32816814 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
32816834 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:32824957 original size:29 final size:30
Alignment explanation
Indices: 32824918--32824996 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
32824908 CTTAATAATC
32824918 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
32824948 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
32824977 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
32824997 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:32830897 original size:33 final size:35
Alignment explanation
Indices: 32830850--32830941 Score: 107
Period size: 35 Copynumber: 2.6 Consensus size: 35
32830840 GTTTCAGTGG
*
32830850 ATCAGCTCTTATGACTTCTGTT-GGCTTCGATTCA
1 ATCAGCTATTATGACTTCTGTTGGGCTTCGATTCA
* * * *
32830884 ATCAGCT-TTATGACTTCTATTTGGGTTTCGGTTTA
1 ATCAGCTATTATGACTTCT-GTTGGGCTTCGATTCA
32830919 ATCAGCTATTATGAGCTTCTGTT
1 ATCAGCTATTATGA-CTTCTGTT
32830942 TGGTGTTTCA
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
33 11 0.22
34 9 0.18
35 16 0.33
36 8 0.16
37 5 0.10
ACGTcount: A:0.18, C:0.18, G:0.18, T:0.45
Consensus pattern (35 bp):
ATCAGCTATTATGACTTCTGTTGGGCTTCGATTCA
Found at i:32830961 original size:38 final size:36
Alignment explanation
Indices: 32830840--32830982 Score: 134
Period size: 38 Copynumber: 4.0 Consensus size: 36
32830830 TTGTATTGTC
*
32830840 GTTTCAG-TGGATCAGCTCTTATGACTTCTG-TT-G
1 GTTTCAGTTGAATCAGCTCTTATGACTTCTGTTTGG
* * *
32830873 GCTTC-GATTCAATCAGCT-TTATGACTTCTATTTGG
1 GTTTCAG-TTGAATCAGCTCTTATGACTTCTGTTTGG
* * *
32830908 GTTTCGGTTTAATCAGCTATTATGAGCTTCTGTTTGG
1 GTTTCAGTTGAATCAGCTCTTATGA-CTTCTGTTTGG
* *
32830945 TGTTTCAGTTGGATCAGCTCTTATGCGCTTCTGTTTGG
1 -GTTTCAGTTGAATCAGCTCTTATG-ACTTCTGTTTGG
32830983 CGATTCGGTA
Statistics
Matches: 89, Mismatches: 12, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
32 1 0.01
33 15 0.17
34 10 0.11
35 15 0.17
36 7 0.08
37 10 0.11
38 31 0.35
ACGTcount: A:0.15, C:0.17, G:0.23, T:0.44
Consensus pattern (36 bp):
GTTTCAGTTGAATCAGCTCTTATGACTTCTGTTTGG
Found at i:32842986 original size:27 final size:27
Alignment explanation
Indices: 32842956--32843133 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
32842946 ATATCGAGTC
* * * *
32842956 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
32842983 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
32843010 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
32843038 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
32843065 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
32843092 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
32843119 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32843134 GTACAATTTA
Statistics
Matches: 132, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
27 108 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:32843095 original size:82 final size:81
Alignment explanation
Indices: 32842977--32843132 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
32842967 TGCTATATAA
*
32842977 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
32843042 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
32843059 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
32843123 CACTTAGTGC
65 CACTTAGTGC
32843133 TGTACAATTT
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 16 0.24
82 52 0.76
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:32849941 original size:57 final size:55
Alignment explanation
Indices: 32849851--32849963 Score: 192
Period size: 57 Copynumber: 2.0 Consensus size: 55
32849841 AATTCCAAAC
32849851 ATTATCCAAAATTTTCATCACATTAAGAACAATACAAA-TATGTATTTGCAATATA
1 ATTATCCAAAATTTTCATCACATTAAGAACAATA-AAACTATGTATTTGCAATATA
32849906 ATTATCCAAAATTTTCATATCACATTAAGAACAATAAAACTATGTATTTGCAATATA
1 ATTATCCAAAATTTTC--ATCACATTAAGAACAATAAAACTATGTATTTGCAATATA
32849963 A
1 A
32849964 CAAACTTCAT
Statistics
Matches: 55, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
55 16 0.29
56 3 0.05
57 36 0.65
ACGTcount: A:0.46, C:0.14, G:0.05, T:0.35
Consensus pattern (55 bp):
ATTATCCAAAATTTTCATCACATTAAGAACAATAAAACTATGTATTTGCAATATA
Found at i:32851909 original size:84 final size:86
Alignment explanation
Indices: 32851761--32851920 Score: 193
Period size: 84 Copynumber: 1.9 Consensus size: 86
32851751 ACACATATCG
* ** * *
32851761 TACAATGCCAATGTCCCAGACGTGGTCTTACGTGTAATCACATGTTGATGCCACTGTCCCAGACA
1 TACAATGCCAATGTCCCAGACATGGTCTTACGTAAAATCACATATCGATGCCACTGTCCCAGACA
*
32851826 GGGTCTTACACAAATCACAAT
66 GAGTCTTACACAAATCACAAT
* *
32851847 TACAATG-CAATG-CGCAGACATGGTCTTAC-TCAAAATCACATATCGATGCCAAC-GTCCTAGA
1 TACAATGCCAATGTCCCAGACATGGTCTTACGT-AAAATCACATATCGATGCC-ACTGTCCCAGA
*
32851908 CATAGTCTTACAC
64 CAGAGTCTTACAC
32851921 GAGAACACAT
Statistics
Matches: 63, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
83 1 0.02
84 48 0.76
85 7 0.11
86 7 0.11
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (86 bp):
TACAATGCCAATGTCCCAGACATGGTCTTACGTAAAATCACATATCGATGCCACTGTCCCAGACA
GAGTCTTACACAAATCACAAT
Found at i:32853066 original size:14 final size:15
Alignment explanation
Indices: 32853049--32853077 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
32853039 GCACGAAAAT
32853049 TTCACACAT-ATAAA
1 TTCACACATAATAAA
32853063 TTCACACATAATAAA
1 TTCACACATAATAAA
32853078 CACTGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:32858946 original size:43 final size:42
Alignment explanation
Indices: 32858783--32858948 Score: 158
Period size: 43 Copynumber: 3.9 Consensus size: 42
32858773 CGTACAATGG
* * * * *
32858783 CAACGTCCTTGACGTGATCTTACATGTAATCACATGTCGATGC
1 CAACGTCCTAGACGTGGTCTTACACG-AAACACATATCGATGC
*
32858826 C-ACTGTCCTAGACAG-GGTCTTACACGAATCACA-ATTACGATGC
1 CAAC-GTCCTAGAC-GTGGTCTTACACGAAACACATA-T-CGATGC
* * * *
32858869 CAATGTCCCAGACATGGTCTTACTCGAAATCACATATCGATGC
1 CAACGTCCTAGACGTGGTCTTACACGAAA-CACATATCGATGC
32858912 CAACGTCCTAGACGTGGTCTTACACGAGAACACATAT
1 CAACGTCCTAGACGTGGTCTTACACGA-AACACATAT
32858949 GAAAAATACT
Statistics
Matches: 101, Mismatches: 13, Indels: 18
0.77 0.10 0.14
Matches are distributed among these distances:
42 10 0.10
43 81 0.80
44 9 0.09
45 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (42 bp):
CAACGTCCTAGACGTGGTCTTACACGAAACACATATCGATGC
Found at i:32861506 original size:46 final size:46
Alignment explanation
Indices: 32861451--32861620 Score: 182
Period size: 46 Copynumber: 3.7 Consensus size: 46
32861441 TCTCATAGCT
*
32861451 GATGCATGTCCCAGACATGTCTTACACTTGCT-TACATCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATCTCGAGGCC
* * * *
32861497 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGTC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAGGCC
* * * * * *
32861543 GATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAAT-GTGACA
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCAT-CTCGAGGCC
*
32861591 TATGCATGTCCCAGACATGTCTTACACTAG
1 GATGCATGTCCCAGACATGTCTTACACTAG
32861621 AGCACAAATG
Statistics
Matches: 102, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
46 54 0.53
47 27 0.26
48 20 0.20
49 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAGGCC
Found at i:32863452 original size:30 final size:32
Alignment explanation
Indices: 32863420--32863480 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
32863410 TTTTAAATTA
*
32863420 TTTTCACTATTTTAAATA-T-AAATTATTTTAT
1 TTTTCAC-ATTTTAAAAATTAAAATTATTTTAT
*
32863451 TTTTTACATTTTAAAAATTAAAATTATTTT
1 TTTTCACATTTTAAAAATTAAAATTATTTT
32863481 TAAATTAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 9 0.35
31 7 0.27
32 10 0.38
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (32 bp):
TTTTCACATTTTAAAAATTAAAATTATTTTAT
Found at i:32863504 original size:21 final size:21
Alignment explanation
Indices: 32863469--32863512 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
32863459 TTTTAAAAAT
**
32863469 TAAAATTATTTTTAAATT-AAA
1 TAAAATTATAATT-AATTCAAA
32863490 TAAAATTATAATTAATTCAAA
1 TAAAATTATAATTAATTCAAA
32863511 TA
1 TA
32863513 GTCATAATTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (21 bp):
TAAAATTATAATTAATTCAAA
Found at i:32863930 original size:19 final size:18
Alignment explanation
Indices: 32863894--32863931 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
32863884 TACACACGAA
32863894 ATATTTAAATAAAAATAT
1 ATATTTAAATAAAAATAT
* *
32863912 ATATTTTAAT-ATAATAT
1 ATATTTAAATAAAAATAT
32863929 ATA
1 ATA
32863932 ATAAATAAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
ATATTTAAATAAAAATAT
Found at i:32874156 original size:32 final size:32
Alignment explanation
Indices: 32874110--32874194 Score: 125
Period size: 32 Copynumber: 2.7 Consensus size: 32
32874100 ACGGGAGTGT
* *
32874110 CCCAAGCCACACGGGCGTGTGTGACCACACGG
1 CCCAACCCACACGGGCGTGTGTAACCACACGG
*
32874142 CCTAACCCACACGGGCGTGTGTAACCACACGG
1 CCCAACCCACACGGGCGTGTGTAACCACACGG
* *
32874174 CCCAACCCATACAGGCGTGTG
1 CCCAACCCACACGGGCGTGTG
32874195 ACTCTCCAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 47 1.00
ACGTcount: A:0.24, C:0.38, G:0.27, T:0.12
Consensus pattern (32 bp):
CCCAACCCACACGGGCGTGTGTAACCACACGG
Found at i:32874171 original size:18 final size:18
Alignment explanation
Indices: 32874116--32874173 Score: 54
Period size: 18 Copynumber: 3.4 Consensus size: 18
32874106 GTGTCCCAAG
*
32874116 CCACACGGGCGTGTGTGA
1 CCACACGGGCGTGTGTAA
*
32874134 CCACAC-GGC----CTAA
1 CCACACGGGCGTGTGTAA
32874147 CCCACACGGGCGTGTGTAA
1 -CCACACGGGCGTGTGTAA
32874166 CCACACGG
1 CCACACGG
32874174 CCCAACCCAT
Statistics
Matches: 31, Mismatches: 3, Indels: 12
0.67 0.07 0.26
Matches are distributed among these distances:
13 2 0.06
14 6 0.19
15 3 0.10
17 3 0.10
18 14 0.45
19 3 0.10
ACGTcount: A:0.22, C:0.36, G:0.29, T:0.12
Consensus pattern (18 bp):
CCACACGGGCGTGTGTAA
Found at i:32883789 original size:46 final size:46
Alignment explanation
Indices: 32883739--32883914 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
32883729 TGATTGAGCA
32883739 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * **
32883785 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GAT-ATAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
32883830 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-C
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
32883877 TCCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
32883915 GCAGGTTACA
Statistics
Matches: 109, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 6 0.06
46 61 0.56
47 29 0.27
48 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:32883895 original size:93 final size:93
Alignment explanation
Indices: 32883736--32883907 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
32883726 GGATGATTGA
*
32883736 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATCTCCGAACTCGTTGAGT
32883801 TGAGTCCGAGTTCGTGAGATATAACTAG
66 TGAGTCCGAGTTCGTGAGATATAACTAG
*
32883829 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-CTCCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATCTCC-GAACTCGTTGAG
32883893 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
32883908 CTTATGGGCA
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 3 0.04
93 73 0.96
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATCTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATATAACTAG
Found at i:32891337 original size:46 final size:46
Alignment explanation
Indices: 32891287--32891462 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
32891277 TGATTGAGCA
32891287 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
32891333 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
32891378 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAATGGATGCGAA-C
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
32891425 TCCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
32891463 GCAGGTTACA
Statistics
Matches: 110, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 6 0.05
46 60 0.55
47 29 0.26
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:32891443 original size:93 final size:93
Alignment explanation
Indices: 32891284--32891455 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
32891274 GGATGATTGA
* *
32891284 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAATGGATGCGAATCTCCGAACTCGTTGAGT
32891349 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
32891377 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAATGGATGCGAA-CTCCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAATGGATGCGAATCTCC-GAACTCGTTGAG
32891441 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
32891456 CTTATGGGCA
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 3 0.04
93 72 0.96
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAATGGATGCGAATCTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:32893441 original size:27 final size:27
Alignment explanation
Indices: 32893397--32893501 Score: 106
Period size: 27 Copynumber: 3.9 Consensus size: 27
32893387 GGCTGCTAGA
* ** * *
32893397 ACAGATAATGTGATAGAGTCACCACAT
1 ACAGATATTGTGGCAGAGCCACCAGAT
*
32893424 ACAGATATCGTGGCAGAGCCACCAGA-
1 ACAGATATTGTGGCAGAGCCACCAGAT
*
32893450 ACAGATATATGTGGCAAAGCCACCAGAT
1 ACAGATAT-TGTGGCAGAGCCACCAGAT
*
32893478 -CAGATAATTGTGGCATAGCCACCA
1 ACAGAT-ATTGTGGCAGAGCCACCA
32893502 AGACGCTTCC
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
26 8 0.12
27 56 0.85
28 2 0.03
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.18
Consensus pattern (27 bp):
ACAGATATTGTGGCAGAGCCACCAGAT
Found at i:32893482 original size:53 final size:54
Alignment explanation
Indices: 32893394--32893501 Score: 130
Period size: 54 Copynumber: 2.0 Consensus size: 54
32893384 CATGGCTGCT
* * *
32893394 AGAACAGATAATGTGATAGAGTCACCACATACAGAT-ATCGTGGCAGAGCCACC
1 AGAACAGATAATGTGACAAAGCCACCACATACAGATAATCGTGGCAGAGCCACC
* * * *
32893447 AGAACAGATATATGTGGCAAAGCCACCAGAT-CAGATAATTGTGGCATAGCCACC
1 AGAACAGATA-ATGTGACAAAGCCACCACATACAGATAATCGTGGCAGAGCCACC
32893501 A
1 A
32893502 AGACGCTTCC
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
53 15 0.33
54 31 0.67
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (54 bp):
AGAACAGATAATGTGACAAAGCCACCACATACAGATAATCGTGGCAGAGCCACC
Found at i:32894915 original size:25 final size:25
Alignment explanation
Indices: 32894887--32894937 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
32894877 AACTCTTGCT
32894887 CCTTGATCAGCTCCTAAATCTTCTC
1 CCTTGATCAGCTCCTAAATCTTCTC
*
32894912 CCTTTATCAGCTCCTAAATCTTCTC
1 CCTTGATCAGCTCCTAAATCTTCTC
32894937 C
1 C
32894938 TTTATCCCCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.20, C:0.37, G:0.06, T:0.37
Consensus pattern (25 bp):
CCTTGATCAGCTCCTAAATCTTCTC
Found at i:32901269 original size:27 final size:27
Alignment explanation
Indices: 32901237--32901337 Score: 109
Period size: 27 Copynumber: 3.8 Consensus size: 27
32901227 TGCCAGAAAC
* * *
32901237 ATAATGTGACAGAGTCGCCAGATACAG
1 ATAATGTGGCAGAGCCACCAGATACAG
*
32901264 ATAATGTGGTAGAGCCACCAGA-A-AG
1 ATAATGTGGCAGAGCCACCAGATACAG
32901289 ATATATGTGGCAGAGCCACCAGAT-CAG
1 ATA-ATGTGGCAGAGCCACCAGATACAG
* *
32901316 ATAATTGTGGCATAGCGACCAG
1 ATAA-TGTGGCAGAGCCACCAG
32901338 GACGCTTCCT
Statistics
Matches: 63, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
25 5 0.08
26 20 0.32
27 38 0.60
ACGTcount: A:0.36, C:0.19, G:0.27, T:0.19
Consensus pattern (27 bp):
ATAATGTGGCAGAGCCACCAGATACAG
Found at i:32901337 original size:53 final size:52
Alignment explanation
Indices: 32901229--32901337 Score: 130
Period size: 53 Copynumber: 2.1 Consensus size: 52
32901219 AGCATGGCTG
* * *
32901229 CCAGAAACATAATGTGACAGAGTCGCCAGATACAGATAATGTGGTAGAGCCA
1 CCAGAAACATAATGTGACAGAGCCACCAGATACAGATAATGTGGCAGAGCCA
* * * *
32901281 CCAGAAAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCGA
1 CCAGAAACATA-ATGTGACAGAGCCACCAGATACAGATAA-TGTGGCAGAGCCA
32901334 CCAG
1 CCAG
32901338 GACGCTTCCT
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
52 17 0.35
53 31 0.65
ACGTcount: A:0.37, C:0.20, G:0.26, T:0.17
Consensus pattern (52 bp):
CCAGAAACATAATGTGACAGAGCCACCAGATACAGATAATGTGGCAGAGCCA
Found at i:32902738 original size:25 final size:24
Alignment explanation
Indices: 32902705--32902761 Score: 87
Period size: 25 Copynumber: 2.3 Consensus size: 24
32902695 AACTCTTGCT
*
32902705 CCTTGATCAGCTCCTAAATCTTCTCC
1 CCTT-ATCAGCTCCTAAATCTTAT-C
32902731 CCTTATCAGCTCCTAAATCTTATC
1 CCTTATCAGCTCCTAAATCTTATC
32902755 CCTTATC
1 CCTTATC
32902762 CCCTCCCTAC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 8 0.27
25 18 0.60
26 4 0.13
ACGTcount: A:0.21, C:0.37, G:0.05, T:0.37
Consensus pattern (24 bp):
CCTTATCAGCTCCTAAATCTTATC
Found at i:32917551 original size:43 final size:43
Alignment explanation
Indices: 32917485--32917612 Score: 177
Period size: 43 Copynumber: 3.0 Consensus size: 43
32917475 ATATCGTACA
** *
32917485 ATGCCAACGTCCCAGACGTGGTCTTACATGCAATCACATATCG
1 ATGCCAATATCCCAGACGTGGTCTTACATGTAATCACATATCG
* * *
32917528 ATGCCACTATCCTAGACAG-GGTCTTACACGTAATCACATATCG
1 ATGCCAATATCCCAGAC-GTGGTCTTACATGTAATCACATATCG
*
32917571 ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCACATATC
1 ATGCCAATATCCCAGACGTGGTCTTACATGTAATCACATATC
32917613 AGAAATCCTA
Statistics
Matches: 73, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
42 1 0.01
43 71 0.97
44 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (43 bp):
ATGCCAATATCCCAGACGTGGTCTTACATGTAATCACATATCG
Found at i:32918757 original size:14 final size:15
Alignment explanation
Indices: 32918740--32918768 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
32918730 ACACGAAAAT
32918740 TTCACACAT-ATAAA
1 TTCACACATAATAAA
32918754 TTCACACATAATAAA
1 TTCACACATAATAAA
32918769 CAAAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:32926655 original size:46 final size:47
Alignment explanation
Indices: 32926485--32926660 Score: 170
Period size: 46 Copynumber: 3.8 Consensus size: 47
32926475 TGTAACCCGC
*
32926485 CCATAAGCGAACTCAGACTCAACTCAACGAGCTC-GAGCATTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGAGCATTCGCAT
* * * *
32926531 CCACAAGTGAACTCGGGCTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGA-G-C-A-TTCGCAT
* *
32926581 CTC-TCA---AACTC-GAACTCAACTCAACGAGTTCGGA-CATTCGCAT
1 C-CATAAGTGAACTCAG-ACTCAACTCAACGAGCTCGGAGCATTCGCAT
*
32926624 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGA
32926661 TGCCCAAATA
Statistics
Matches: 106, Mismatches: 11, Indels: 26
0.74 0.08 0.18
Matches are distributed among these distances:
42 3 0.03
43 7 0.07
44 1 0.01
46 57 0.54
47 27 0.25
48 1 0.01
49 1 0.01
50 6 0.06
51 3 0.03
ACGTcount: A:0.31, C:0.31, G:0.18, T:0.20
Consensus pattern (47 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGAGCATTCGCAT
Found at i:32940969 original size:40 final size:40
Alignment explanation
Indices: 32940886--32941071 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
32940876 TTGAATGATG
* * * *
32940886 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
32940926 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
32940966 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
32941006 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
32941047 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32941072 AACGAGTAGC
Statistics
Matches: 133, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 1 0.01
40 122 0.92
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:32941078 original size:80 final size:79
Alignment explanation
Indices: 32940939--32941104 Score: 228
Period size: 80 Copynumber: 2.1 Consensus size: 79
32940929 GGACTAAGAT
* **
32940939 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCT
*
32941003 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAATC
*
32941019 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCT
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCT
* *
32941083 ATATCCGGTTAAATT
65 AAATCCGGTTAAATC
32941098 CCGAAGG
1 CCGAAGG
32941105 TACGTGATTT
Statistics
Matches: 77, Mismatches: 7, Indels: 5
0.87 0.08 0.06
Matches are distributed among these distances:
79 16 0.21
80 59 0.77
81 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAATC
Found at i:32945290 original size:29 final size:27
Alignment explanation
Indices: 32945254--32945310 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 27
32945244 AGACTCCTAA
* **
32945254 TTTCTATATTGTTTTGTATATTGATTGT
1 TTTCTATATTATTTCATATATT-ATTGT
32945282 TTTCTTATATTATTTCATATATTATTGT
1 TTTC-TATATTATTTCATATATTATTGT
32945310 T
1 T
32945311 GCATGTTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 10 0.40
29 15 0.60
ACGTcount: A:0.21, C:0.05, G:0.09, T:0.65
Consensus pattern (27 bp):
TTTCTATATTATTTCATATATTATTGT
Found at i:32946083 original size:77 final size:77
Alignment explanation
Indices: 32945953--32946114 Score: 243
Period size: 77 Copynumber: 2.1 Consensus size: 77
32945943 AGTTTTTGGA
* * * * *
32945953 AATCAAGAATTGGTCGTAGCTACGAGGGTTTAAAGGATCGTTTCCTAATGTGCTGGATGTGATAC
1 AATCAAGAATTGATCGTAGCTACAAAGGTTTAAAGGATCGTGTCCTAACGTGCTGGATGTGATAC
32946018 TGTATTCCTTTG
66 TGTATTCCTTTG
* * *
32946030 AATCAAGAATTGATCGTAGTTTCAAAGGTTTAAAGGATCGTGTCCTAACGTGCTGGATGTGATAT
1 AATCAAGAATTGATCGTAGCTACAAAGGTTTAAAGGATCGTGTCCTAACGTGCTGGATGTGATAC
32946095 TGTATTCCTTTG
66 TGTATTCCTTTG
*
32946107 AAACAAGA
1 AATCAAGA
32946115 GAGTTTTAAC
Statistics
Matches: 76, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
77 76 1.00
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.34
Consensus pattern (77 bp):
AATCAAGAATTGATCGTAGCTACAAAGGTTTAAAGGATCGTGTCCTAACGTGCTGGATGTGATAC
TGTATTCCTTTG
Done.