Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 102 of 356
Found at i:32196415 original size:19 final size:19
Alignment explanation
Indices: 32196391--32196428 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
32196381 GAAGAAAGTC
32196391 CCCTATTCAGAACGGTGGT
1 CCCTATTCAGAACGGTGGT
32196410 CCCTATTCAGAACGGTGGT
1 CCCTATTCAGAACGGTGGT
32196429 TTCAGGACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.26, G:0.26, T:0.26
Consensus pattern (19 bp):
CCCTATTCAGAACGGTGGT
Found at i:32200754 original size:14 final size:14
Alignment explanation
Indices: 32200735--32200766 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
32200725 AAATCAATTA
32200735 AAACACGGTTTCCC
1 AAACACGGTTTCCC
*
32200749 AAACACTGTTTCCC
1 AAACACGGTTTCCC
32200763 AAAC
1 AAAC
32200767 TAAGTAAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.34, C:0.34, G:0.09, T:0.22
Consensus pattern (14 bp):
AAACACGGTTTCCC
Found at i:32208779 original size:19 final size:19
Alignment explanation
Indices: 32208755--32208798 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
32208745 TACAAGCAAC
*
32208755 ACAACATCAACCCAAATAA
1 ACAACATCAACCCAAAAAA
* *
32208774 ACAACATTAATCCAAAAAA
1 ACAACATCAACCCAAAAAA
32208793 ACAACA
1 ACAACA
32208799 AAAAAAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.61, C:0.27, G:0.00, T:0.11
Consensus pattern (19 bp):
ACAACATCAACCCAAAAAA
Found at i:32209256 original size:212 final size:212
Alignment explanation
Indices: 32208872--32209267 Score: 650
Period size: 212 Copynumber: 1.9 Consensus size: 212
32208862 GTCGAAGTAA
* *
32208872 ACAACGACATTATAATAAAAAAAAACATAAGAAAAAGTCCAAAATACAATAGAAACTTACACCAC
1 ACAACAACATTATAATAAAAAAAAACATAAGAAAAAGTCCAAAATACAATAGAAACCTACACCAC
* *
32208937 TCCAAACAAAAAAAAACACAACAAAAGTTTAATTAACCAACAACAATAACAAACCAAACCAAACT
66 TCCAAACAAAAAAAAACACAACAAAAGCTCAATTAACCAACAACAATAACAAACCAAACCAAACT
*
32209002 AATAACAATAACACATAAGCTCAAAAACCATTATAGAATAGTTTAAGTTTCTTCATGAGTCCAAA
131 AATAACAATAACACATAAGCTCAAAAACCATTATAGAATAGTTTAACTTTCTTCATGAGTCCAAA
32209067 TAAACAACAAAAACAAT
196 TAAACAACAAAAACAAT
* * * *
32209084 ACAACAACATTGTAATTAAAAAAAACATAAGCAAAAGTCCAAAATACAATAGAAACCTACACCAG
1 ACAACAACATTATAATAAAAAAAAACATAAGAAAAAGTCCAAAATACAATAGAAACCTACACCAC
* *
32209149 TCCAAA-AAAAAAAGAACACAACAAAAGCTCAATTATCCAACAATAATAACAAACCAAACCAAAC
66 TCCAAACAAAAAAA-AACACAACAAAAGCTCAATTAACCAACAACAATAACAAACCAAACCAAAC
* * *
32209213 TAATAACAATAACACATCAGTTCAAAACCCATTATAGAATAGTTTAACTTTCTTC
130 TAATAACAATAACACATAAGCTCAAAAACCATTATAGAATAGTTTAACTTTCTTC
32209268 TTGTGCTTCA
Statistics
Matches: 169, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
211 7 0.04
212 162 0.96
ACGTcount: A:0.56, C:0.21, G:0.05, T:0.18
Consensus pattern (212 bp):
ACAACAACATTATAATAAAAAAAAACATAAGAAAAAGTCCAAAATACAATAGAAACCTACACCAC
TCCAAACAAAAAAAAACACAACAAAAGCTCAATTAACCAACAACAATAACAAACCAAACCAAACT
AATAACAATAACACATAAGCTCAAAAACCATTATAGAATAGTTTAACTTTCTTCATGAGTCCAAA
TAAACAACAAAAACAAT
Found at i:32211692 original size:30 final size:30
Alignment explanation
Indices: 32211652--32211718 Score: 116
Period size: 30 Copynumber: 2.2 Consensus size: 30
32211642 GTTAAATTAA
* *
32211652 AAATCAATTAATATAATAGTATAATAGCAT
1 AAATTAATTAATATAATAGTACAATAGCAT
32211682 AAATTAATTAATATAATAGTACAATAGCAT
1 AAATTAATTAATATAATAGTACAATAGCAT
32211712 AAATTAA
1 AAATTAA
32211719 AAATAGATAG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.55, C:0.06, G:0.06, T:0.33
Consensus pattern (30 bp):
AAATTAATTAATATAATAGTACAATAGCAT
Found at i:32213888 original size:9 final size:9
Alignment explanation
Indices: 32213876--32213912 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
32213866 ATATAGTTTA
*
32213876 TATTCGATT
1 TATTCGAAT
32213885 TATTCGAAT
1 TATTCGAAT
*
32213894 TATTCGAGT
1 TATTCGAAT
32213903 TATTCGAAT
1 TATTCGAAT
32213912 T
1 T
32213913 CGAGAATTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.27, C:0.11, G:0.14, T:0.49
Consensus pattern (9 bp):
TATTCGAAT
Found at i:32213899 original size:18 final size:18
Alignment explanation
Indices: 32213876--32213912 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
32213866 ATATAGTTTA
*
32213876 TATTCGATTTATTCGAAT
1 TATTCGAGTTATTCGAAT
32213894 TATTCGAGTTATTCGAAT
1 TATTCGAGTTATTCGAAT
32213912 T
1 T
32213913 CGAGAATTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.27, C:0.11, G:0.14, T:0.49
Consensus pattern (18 bp):
TATTCGAGTTATTCGAAT
Found at i:32213978 original size:9 final size:9
Alignment explanation
Indices: 32213953--32213998 Score: 56
Period size: 9 Copynumber: 5.0 Consensus size: 9
32213943 TTGAAAAAAA
32213953 AATTCGAGTT
1 AATTCGA-TT
*
32213963 GATTCGATT
1 AATTCGATT
32213972 AATTCGATT
1 AATTCGATT
*
32213981 AACTCGATT
1 AATTCGATT
*
32213990 AACTCGATT
1 AATTCGATT
32213999 CGAATAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
9 27 0.82
10 6 0.18
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.39
Consensus pattern (9 bp):
AATTCGATT
Found at i:32218411 original size:13 final size:13
Alignment explanation
Indices: 32218393--32218418 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32218383 GCTCGGCAGA
32218393 GACACGCCCGTGT
1 GACACGCCCGTGT
32218406 GACACGCCCGTGT
1 GACACGCCCGTGT
32218419 TCAATTGCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.38, G:0.31, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:32225610 original size:27 final size:30
Alignment explanation
Indices: 32225563--32225632 Score: 85
Period size: 27 Copynumber: 2.5 Consensus size: 30
32225553 TATCTCTTCC
*
32225563 TTAGATTGTCCT-AAGGCGACTTCC-A-CA
1 TTAGATAGTCCTAAAGGCGACTTCCTAGCA
*
32225590 TTAGATAGTCCTAAATG-GACTTCCTAGCA
1 TTAGATAGTCCTAAAGGCGACTTCCTAGCA
*
32225619 CTAGATAGTCCTAA
1 TTAGATAGTCCTAA
32225633 CGAACATCCT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
27 18 0.49
28 4 0.11
29 15 0.41
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (30 bp):
TTAGATAGTCCTAAAGGCGACTTCCTAGCA
Found at i:32226245 original size:38 final size:38
Alignment explanation
Indices: 32226171--32226275 Score: 122
Period size: 38 Copynumber: 2.8 Consensus size: 38
32226161 AAGCTTGTAG
* *
32226171 ACCATTTTCATGGTG-CTGCTCCGTAGAGCTTATAGATA
1 ACCATTTTCACGGTGTC-GCTCCATAGAGCTTATAGATA
* * * *
32226209 ACCCTTTTTAGGGTGTCGCTTCATAGAGCTTATAGATA
1 ACCATTTTCACGGTGTCGCTCCATAGAGCTTATAGATA
* *
32226247 ATCATTTTCACGGTGTCGCTCCGTAGAGC
1 ACCATTTTCACGGTGTCGCTCCATAGAGC
32226276 CTGTAGACTA
Statistics
Matches: 55, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
38 54 0.98
39 1 0.02
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.34
Consensus pattern (38 bp):
ACCATTTTCACGGTGTCGCTCCATAGAGCTTATAGATA
Found at i:32228799 original size:18 final size:18
Alignment explanation
Indices: 32228778--32228812 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
32228768 AATCAGTAAT
* *
32228778 CAGTAACGGTAGCAGTAG
1 CAGTAACAGTAACAGTAG
32228796 CAGTAACAGTAACAGTA
1 CAGTAACAGTAACAGTA
32228813 TTCAACACAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.17, G:0.26, T:0.17
Consensus pattern (18 bp):
CAGTAACAGTAACAGTAG
Found at i:32228846 original size:45 final size:45
Alignment explanation
Indices: 32228796--32228902 Score: 146
Period size: 45 Copynumber: 2.4 Consensus size: 45
32228786 GTAGCAGTAG
* *
32228796 CAGTAACAGTAACAGTATTCAACACACAAAGTG-CTGAATTTG-TAA
1 CAGTAACGGTAACAGTATTCAACACACAAAGTGTC-GAA-TCGATAA
* *
32228841 CAGTAATGGTAACAGTATTCGACACACAAAGTGTCGAATCGATAA
1 CAGTAACGGTAACAGTATTCAACACACAAAGTGTCGAATCGATAA
32228886 CAGTAACGGTAACAGTA
1 CAGTAACGGTAACAGTA
32228903 ACAGTAGTCG
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
44 2 0.04
45 52 0.95
46 1 0.02
ACGTcount: A:0.41, C:0.18, G:0.19, T:0.22
Consensus pattern (45 bp):
CAGTAACGGTAACAGTATTCAACACACAAAGTGTCGAATCGATAA
Found at i:32230522 original size:20 final size:20
Alignment explanation
Indices: 32230499--32230538 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
32230489 AAAACCATAG
32230499 CAATTA-ATAATTATAATAAT
1 CAATTATATAA-TATAATAAT
32230519 CAATTATATAATATAATAAT
1 CAATTATATAATATAATAAT
32230539 ATATATAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (20 bp):
CAATTATATAATATAATAAT
Found at i:32230543 original size:17 final size:17
Alignment explanation
Indices: 32230514--32230547 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
32230504 AATAATTATA
32230514 ATAATCAATTATATAAT
1 ATAATCAATTATATAAT
32230531 ATAAT-AATATATATAAT
1 ATAATCAAT-TATATAAT
32230548 CTAAATAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.19
17 13 0.81
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (17 bp):
ATAATCAATTATATAAT
Found at i:32231372 original size:46 final size:46
Alignment explanation
Indices: 32231246--32231409 Score: 158
Period size: 46 Copynumber: 3.5 Consensus size: 46
32231236 GTGCCGGTGC
* *
32231246 CATGTCCCAGACATGGTCTTACACTGAC--ACATCTCGTA-GCCGATG
1 CATGTCCCAGACAT-GTCTTACACTGACTTACGTCTC-AAGGCCGATG
* *
32231291 CATGTCCCAGCCATGTCTTACACTGACTTACGTCTCAAGGCCGAAG
1 CATGTCCCAGACATGTCTTACACTGACTTACGTCTCAAGGCCGATG
* * * **
32231337 CATGTCCCAGATATGTCTTACACTAGCAC-T-GGTCTCAATGTTGATG
1 CATGTCCCAGACATGTCTTACACT-G-ACTTACGTCTCAAGGCCGATG
32231383 CCATGTCCCAGACATGGTCTTACACTG
1 -CATGTCCCAGACAT-GTCTTACACTG
32231410 GCTCTCATAA
Statistics
Matches: 100, Mismatches: 12, Indels: 12
0.81 0.10 0.10
Matches are distributed among these distances:
44 13 0.13
45 14 0.14
46 45 0.45
47 16 0.16
48 12 0.12
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.27
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGACTTACGTCTCAAGGCCGATG
Found at i:32234933 original size:20 final size:19
Alignment explanation
Indices: 32234905--32234942 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
32234895 TAAATTATTA
*
32234905 TTCTTAGAAAATAGAATTTG
1 TTCTAAGAAAATA-AATTTG
32234925 TTCTAAGAAAATAAATTT
1 TTCTAAGAAAATAAATTT
32234943 CCACTACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.45, C:0.05, G:0.11, T:0.39
Consensus pattern (19 bp):
TTCTAAGAAAATAAATTTG
Found at i:32242533 original size:13 final size:15
Alignment explanation
Indices: 32242515--32242546 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
32242505 TTTTGTTAGA
32242515 TAAATA-ATTTTT-G
1 TAAATAGATTTTTGG
32242528 TAAATAGATTTTTGG
1 TAAATAGATTTTTGG
32242543 TAAA
1 TAAA
32242547 ATTATCAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 6 0.35
14 6 0.35
15 5 0.29
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.47
Consensus pattern (15 bp):
TAAATAGATTTTTGG
Found at i:32242941 original size:22 final size:21
Alignment explanation
Indices: 32242913--32242966 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 21
32242903 GTTTGTGTAA
32242913 TTAAATTGTATATTTATATGTT
1 TTAAATTGTATA-TTATATGTT
*
32242935 TTAAATTG-A-ATTATTTGTT
1 TTAAATTGTATATTATATGTT
*
32242954 TGTGAATTGTATA
1 T-TAAATTGTATA
32242967 ATTGTCATGA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
19 9 0.33
20 7 0.26
21 2 0.07
22 9 0.33
ACGTcount: A:0.31, C:0.00, G:0.13, T:0.56
Consensus pattern (21 bp):
TTAAATTGTATATTATATGTT
Found at i:32243110 original size:24 final size:24
Alignment explanation
Indices: 32243074--32243119 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
32243064 ACCGATACCT
* * *
32243074 AGCTCGGAGGAGCTTACTGATTAC
1 AGCTCGGAAGAGCATACCGATTAC
*
32243098 AGCTCGTAAGAGCATACCGATT
1 AGCTCGGAAGAGCATACCGATT
32243120 CAGAACTCAT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (24 bp):
AGCTCGGAAGAGCATACCGATTAC
Found at i:32243863 original size:21 final size:20
Alignment explanation
Indices: 32243813--32243864 Score: 50
Period size: 21 Copynumber: 2.5 Consensus size: 20
32243803 GCGTTATATT
* *
32243813 GATAGAAGTCCAGGTTGTATT
1 GATAGAACT-CAGGTTGTATC
* *
32243834 GGTATAACTCAGAGTTGTATC
1 GATAGAACTCAG-GTTGTATC
32243855 GATAGAACTC
1 GATAGAACTC
32243865 TTTGTTCTAC
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
20 3 0.12
21 21 0.88
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.31
Consensus pattern (20 bp):
GATAGAACTCAGGTTGTATC
Found at i:32259492 original size:19 final size:20
Alignment explanation
Indices: 32259452--32259498 Score: 62
Period size: 19 Copynumber: 2.4 Consensus size: 20
32259442 TTATAAATTT
32259452 TAAAAAGTCAAAATAATATA
1 TAAAAAGTCAAAATAATATA
*
32259472 TAAAAA-TCGAAA-AATATTA
1 TAAAAAGTCAAAATAATA-TA
32259491 TAAAAAGT
1 TAAAAAGT
32259499 ACTTAAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 4 0.17
19 13 0.54
20 7 0.29
ACGTcount: A:0.64, C:0.04, G:0.06, T:0.26
Consensus pattern (20 bp):
TAAAAAGTCAAAATAATATA
Found at i:32259619 original size:21 final size:21
Alignment explanation
Indices: 32259595--32259635 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
32259585 TAAAACATAT
*
32259595 TTTTA-AATCTTTTTTAATTTC
1 TTTTATAAT-TTTTATAATTTC
32259616 TTTTATAATTTTTATAATTT
1 TTTTATAATTTTTATAATTT
32259636 TTGTACATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (21 bp):
TTTTATAATTTTTATAATTTC
Found at i:32259771 original size:20 final size:20
Alignment explanation
Indices: 32259748--32259789 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 20
32259738 TTTTTCTACA
32259748 TTATATA-TATTTCTGATTTT
1 TTATATATTATTT-TGATTTT
32259768 TTATATATTTATTTTGATTTT
1 TTATATA-TTATTTTGATTTT
32259789 T
1 T
32259790 AATGTGTATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 7 0.35
21 8 0.40
22 5 0.25
ACGTcount: A:0.24, C:0.02, G:0.05, T:0.69
Consensus pattern (20 bp):
TTATATATTATTTTGATTTT
Found at i:32259790 original size:20 final size:22
Alignment explanation
Indices: 32259749--32259789 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
32259739 TTTTCTACAT
32259749 TATATATATTTCTGATTTTTTA
1 TATATATATTTCTGATTTTTTA
*
32259771 TATATTTATTT-TGATTTTT
1 TATATATATTTCTGATTTTT
32259790 AATGTGTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.24, C:0.02, G:0.05, T:0.68
Consensus pattern (22 bp):
TATATATATTTCTGATTTTTTA
Found at i:32260243 original size:22 final size:22
Alignment explanation
Indices: 32260203--32260248 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
32260193 TATCTACTTA
*
32260203 TTTATAATTAAATAATATAAAT
1 TTTATAATTAAAAAATATAAAT
*
32260225 TTTATAA-TAAAAAATTATATAT
1 TTTATAATTAAAAAA-TATAAAT
32260247 TT
1 TT
32260249 ATTAAATTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
TTTATAATTAAAAAATATAAAT
Found at i:32260249 original size:21 final size:21
Alignment explanation
Indices: 32260201--32260250 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
32260191 TATATCTACT
*
32260201 TATTTATAATTAAATAATATA
1 TATTTATAATTAAAAAATATA
*
32260222 AATTTTATAA-TAAAAAATTATA
1 TA-TTTATAATTAAAAAA-TATA
32260244 TATTTAT
1 TATTTAT
32260251 TAAATTATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
21 12 0.50
22 12 0.50
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
TATTTATAATTAAAAAATATA
Found at i:32260282 original size:8 final size:8
Alignment explanation
Indices: 32260205--32260289 Score: 53
Period size: 8 Copynumber: 11.8 Consensus size: 8
32260195 TCTACTTATT
32260205 TATAATTA
1 TATAATTA
*
32260213 AATAA-TA
1 TATAATTA
*
32260220 TA-AATTT
1 TATAATTA
32260227 TATAA-TA
1 TATAATTA
* *
32260234 AAAAATTA
1 TATAATTA
*
32260242 TATATTTA
1 TATAATTA
32260250 T-TAA--A
1 TATAATTA
32260255 T-T-ATTA
1 TATAATTA
32260261 TATAATTA
1 TATAATTA
*
32260269 -AAAATTA
1 TATAATTA
32260276 TATAATTA
1 TATAATTA
32260284 TATAAT
1 TATAAT
32260290 AAATGAAATA
Statistics
Matches: 57, Mismatches: 12, Indels: 16
0.67 0.14 0.19
Matches are distributed among these distances:
4 1 0.02
5 3 0.05
6 4 0.07
7 19 0.33
8 30 0.53
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (8 bp):
TATAATTA
Found at i:32260282 original size:15 final size:15
Alignment explanation
Indices: 32260208--32260283 Score: 64
Period size: 15 Copynumber: 4.9 Consensus size: 15
32260198 ACTTATTTAT
* *
32260208 AATTAAATAA-TATA
1 AATTATATAATTAAA
* *
32260222 AATTTTATAATAAAA
1 AATTATATAATTAAA
32260237 AATTATATATTTATTAAA
1 AATTATATA---ATTAAA
*
32260255 TTATTATATAATTAAA
1 -AATTATATAATTAAA
32260271 AATTATATAATTA
1 AATTATATAATTA
32260284 TATAATAAAT
Statistics
Matches: 49, Mismatches: 8, Indels: 9
0.74 0.12 0.14
Matches are distributed among these distances:
14 8 0.16
15 22 0.45
16 6 0.12
18 5 0.10
19 8 0.16
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
AATTATATAATTAAA
Found at i:32267376 original size:6 final size:7
Alignment explanation
Indices: 32267358--32267382 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
32267348 AACACTTGCA
32267358 ATTTTTC
1 ATTTTTC
32267365 ATTTTTC
1 ATTTTTC
32267372 ATTTTTC
1 ATTTTTC
32267379 ATTT
1 ATTT
32267383 CTTAAACTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.12, G:0.00, T:0.72
Consensus pattern (7 bp):
ATTTTTC
Found at i:32268382 original size:15 final size:14
Alignment explanation
Indices: 32268346--32268385 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
32268336 TGTTTGACTT
32268346 AAAATAA-TTTTAA
1 AAAATAATTTTTAA
32268359 AAAATAATTTTTAA
1 AAAATAATTTTTAA
32268373 AAAATGAATTTTT
1 AAAAT-AATTTTT
32268386 TTTGGAGAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
13 7 0.28
14 11 0.44
15 7 0.28
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (14 bp):
AAAATAATTTTTAA
Found at i:32268717 original size:28 final size:28
Alignment explanation
Indices: 32268678--32268734 Score: 66
Period size: 28 Copynumber: 2.0 Consensus size: 28
32268668 AAATATTTTG
32268678 TAATAATCAATG-TT-ATATATAAACTTAA
1 TAATAATCAATGCTTAAT-TA-AAACTTAA
32268706 TAATATAT-AATGCTTAATTAAAACTTAA
1 TAATA-ATCAATGCTTAATTAAAACTTAA
32268734 T
1 T
32268735 TAAATTACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
28 18 0.69
29 6 0.23
30 2 0.08
ACGTcount: A:0.49, C:0.07, G:0.04, T:0.40
Consensus pattern (28 bp):
TAATAATCAATGCTTAATTAAAACTTAA
Found at i:32277929 original size:16 final size:16
Alignment explanation
Indices: 32277893--32277929 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
32277883 TTGGTTCGCT
*
32277893 GTAATGGAATAGATGC
1 GTAATGGAATAGAGGC
*
32277909 ATAATGGAATAGAGGC
1 GTAATGGAATAGAGGC
32277925 GTAAT
1 GTAAT
32277930 AGATAATTCT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.41, C:0.05, G:0.30, T:0.24
Consensus pattern (16 bp):
GTAATGGAATAGAGGC
Found at i:32277998 original size:44 final size:46
Alignment explanation
Indices: 32277910--32277999 Score: 148
Period size: 44 Copynumber: 2.0 Consensus size: 46
32277900 AATAGATGCA
*
32277910 TAATGGAATAGAGGCGTAATAGATAATTCTTTTGTTTGGTTGAATG
1 TAATGGAATAGAGGCGTAATAGATAATTCTTGTGTTTGGTTGAATG
*
32277956 TAATGGAATAGAGGCGTAAT-GGT-ATTCTTGTGTTTGGTTGAATG
1 TAATGGAATAGAGGCGTAATAGATAATTCTTGTGTTTGGTTGAATG
32278000 GAATAGAGGT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
44 20 0.48
45 2 0.05
46 20 0.48
ACGTcount: A:0.28, C:0.04, G:0.29, T:0.39
Consensus pattern (46 bp):
TAATGGAATAGAGGCGTAATAGATAATTCTTGTGTTTGGTTGAATG
Found at i:32278001 original size:39 final size:44
Alignment explanation
Indices: 32277910--32278015 Score: 132
Period size: 46 Copynumber: 2.5 Consensus size: 44
32277900 AATAGATGCA
*
32277910 TAATGGAATAGAGGCGTAATAGATAATTCTTTTGTTTGGTTGAATG
1 TAATGGAATAGAGGCGTAATAGATAATTCTTGTGTTTGGTT--ATG
*
32277956 TAATGGAATAGAGGCGTAAT-GGT-ATTCTTGTGTTTGG-T-TG
1 TAATGGAATAGAGGCGTAATAGATAATTCTTGTGTTTGGTTATG
*
32277996 -AATGGAATAGAGGTGTAATA
1 TAATGGAATAGAGGCGTAATA
32278016 ACATAAGGAA
Statistics
Matches: 56, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
39 18 0.32
40 2 0.04
43 1 0.02
44 13 0.23
45 2 0.04
46 20 0.36
ACGTcount: A:0.30, C:0.04, G:0.29, T:0.37
Consensus pattern (44 bp):
TAATGGAATAGAGGCGTAATAGATAATTCTTGTGTTTGGTTATG
Found at i:32278168 original size:16 final size:15
Alignment explanation
Indices: 32278158--32278313 Score: 61
Period size: 17 Copynumber: 10.5 Consensus size: 15
32278148 CATAATTGTT
32278158 ATAAAATATAATTTA
1 ATAAAATATAATTTA
32278173 ATAAAATATATAATTTA
1 AT-AAA-ATATAATTTA
32278190 ATAAAAT-T--TTTA
1 ATAAAATATAATTTA
32278202 AT-AAATAT--TCTT-
1 ATAAAATATAAT-TTA
* * *
32278214 ATATGAAT-TTA-CTA
1 ATA-AAATATAATTTA
32278228 ATAAAATCATAATATATGA
1 ATAAAAT-ATAAT-T-T-A
32278247 TACTAAAATATAATTTA
1 -A-TAAAATATAATTTA
32278264 A-AATAAT-T-A-TT-
1 ATAA-AATATAATTTA
*
32278275 ATTAAATATAATTTA
1 ATAAAATATAATTTA
32278290 ATAAAATATATAATTTA
1 AT-AAA-ATATAATTTA
32278307 ATAAAAT
1 ATAAAAT
32278314 TGTTAATAAA
Statistics
Matches: 109, Mismatches: 7, Indels: 50
0.66 0.04 0.30
Matches are distributed among these distances:
11 8 0.07
12 14 0.13
13 9 0.08
14 12 0.11
15 13 0.12
16 12 0.11
17 25 0.23
18 2 0.02
19 2 0.02
20 6 0.06
21 6 0.06
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (15 bp):
ATAAAATATAATTTA
Found at i:32278203 original size:17 final size:17
Alignment explanation
Indices: 32278163--32278196 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
32278153 TTGTTATAAA
32278163 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
32278180 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
32278197 TTTTAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:32278320 original size:17 final size:17
Alignment explanation
Indices: 32278280--32278313 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
32278270 TTATTATTAA
32278280 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
32278297 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
32278314 TGTTAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:32278324 original size:43 final size:43
Alignment explanation
Indices: 32278254--32278443 Score: 151
Period size: 43 Copynumber: 4.7 Consensus size: 43
32278244 TGATACTAAA
* *
32278254 ATATAATTTAA-AATAATTATTATTAAATATAATTTAATAAAAT
1 ATATAATTTAATAA-AATTGTTAATAAATATAATTTAATAAAAT
*
32278297 ATATAATTTAATAAAATTGTTAATAAATAT--TCTT-ATATGAAT
1 ATATAATTTAATAAAATTGTTAATAAATATAAT-TTAATA-AAAT
* ** *
32278339 -T-T-A-CTAATAAAA-TCATAAT--ATATAA--TACT-AAA-
1 ATATAATTTAATAAAATTGTTAATAAATATAATTTAATAAAAT
* *
32278371 ATATAATTTAACATAATTGTT-ATAAAATATAATTTAATAAAAT
1 ATATAATTTAATAAAATTGTTAAT-AAATATAATTTAATAAAAT
32278414 ATATAATTTAATAAAATTGTTAATAAATAT
1 ATATAATTTAATAAAATTGTTAATAAATAT
32278444 TCTTATATGA
Statistics
Matches: 112, Mismatches: 16, Indels: 38
0.67 0.10 0.23
Matches are distributed among these distances:
33 3 0.03
34 2 0.02
35 6 0.05
36 8 0.07
37 7 0.06
38 8 0.07
39 7 0.06
40 1 0.01
41 8 0.07
42 8 0.07
43 50 0.45
44 4 0.04
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42
Consensus pattern (43 bp):
ATATAATTTAATAAAATTGTTAATAAATATAATTTAATAAAAT
Found at i:32278349 original size:117 final size:117
Alignment explanation
Indices: 32278143--32278546 Score: 702
Period size: 117 Copynumber: 3.5 Consensus size: 117
32278133 TTAATCATAT
* * *
32278143 TTTAACATAATTGTTATAAAATATAATTTAATAAAATATATAATTTAATAAAATTTTTAATAAAT
1 TTTAAAATAATTATTATAAAATATAATTTAATAAAATATATAATTTAATAAAATTGTTAATAAAT
*
32278208 ATTCTTATATGAATTTACTAATAAAATCATAATATATGATACTAAAATATAA
66 ATTCTTATATGAATTTACTAATAAAATCATAATATATAATACTAAAATATAA
*
32278260 TTTAAAATAATTATTATTAAATATAATTTAATAAAATATATAATTTAATAAAATTGTTAATAAAT
1 TTTAAAATAATTATTATAAAATATAATTTAATAAAATATATAATTTAATAAAATTGTTAATAAAT
32278325 ATTCTTATATGAATTTACTAATAAAATCATAATATATAATACTAAAATATAA
66 ATTCTTATATGAATTTACTAATAAAATCATAATATATAATACTAAAATATAA
* *
32278377 TTTAACATAATTGTTATAAAATATAATTTAATAAAATATATAATTTAATAAAATTGTTAATAAAT
1 TTTAAAATAATTATTATAAAATATAATTTAATAAAATATATAATTTAATAAAATTGTTAATAAAT
32278442 ATTCTTATATGAATTTACTAATAAAATCATAATATATAATACTAAAATATAA
66 ATTCTTATATGAATTTACTAATAAAATCATAATATATAATACTAAAATATAA
* ** *
32278494 TTTAAAATAATTATTATTATCT-TAATTTAATAAAATATATAATTTACTAAAAT
1 TTTAAAATAATTATTATAAAATATAATTTAATAAAATATATAATTTAATAAAAT
32278547 CATAATATAT
Statistics
Matches: 273, Mismatches: 14, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
116 30 0.11
117 243 0.89
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (117 bp):
TTTAAAATAATTATTATAAAATATAATTTAATAAAATATATAATTTAATAAAATTGTTAATAAAT
ATTCTTATATGAATTTACTAATAAAATCATAATATATAATACTAAAATATAA
Found at i:32278412 original size:15 final size:15
Alignment explanation
Indices: 32278392--32278430 Score: 60
Period size: 17 Copynumber: 2.5 Consensus size: 15
32278382 CATAATTGTT
32278392 ATAAAATATAATTTA
1 ATAAAATATAATTTA
32278407 ATAAAATATATAATTTA
1 AT-AAA-ATATAATTTA
32278424 ATAAAAT
1 ATAAAAT
32278431 TGTTAATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 4 0.18
16 6 0.27
17 12 0.55
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
ATAAAATATAATTTA
Found at i:32278437 original size:17 final size:17
Alignment explanation
Indices: 32278397--32278430 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
32278387 TTGTTATAAA
32278397 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
32278414 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
32278431 TGTTAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:32278502 original size:20 final size:21
Alignment explanation
Indices: 32278463--32278502 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
32278453 AATTTACTAA
*
32278463 TAAAATCATAATATATAATAC
1 TAAAATCATAATATAAAATAC
*
32278484 TAAAAT-ATAATTTAAAATA
1 TAAAATCATAATATAAAATA
32278503 ATTATTATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (21 bp):
TAAAATCATAATATAAAATAC
Found at i:32278529 original size:40 final size:39
Alignment explanation
Indices: 32278474--32278591 Score: 104
Period size: 38 Copynumber: 3.1 Consensus size: 39
32278464 AAAATCATAA
32278474 TATATAATAC--TAAAATATAATTTAAAATAATTATTAT
1 TATATAATACTATAAAATATAATTTAAAATAATTATTAT
* * * * *
32278511 TATCTTAAT-TTAATAAAATATATAATTTACTAA-AATCA-TAA
1 TAT-ATAATACT-AT-AAA-ATATAATTTA-AAATAATTATTAT
32278552 TATATAATACTATAAAATATAATTT-AAATAATTATTAT
1 TATATAATACTATAAAATATAATTTAAAATAATTATTAT
32278590 TA
1 TA
32278592 AATATAATTT
Statistics
Matches: 61, Mismatches: 10, Indels: 19
0.68 0.11 0.21
Matches are distributed among these distances:
36 2 0.03
37 7 0.11
38 17 0.28
39 3 0.05
40 7 0.11
41 9 0.15
42 14 0.23
43 2 0.03
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (39 bp):
TATATAATACTATAAAATATAATTTAAAATAATTATTAT
Found at i:32278567 original size:23 final size:22
Alignment explanation
Indices: 32278522--32278611 Score: 67
Period size: 23 Copynumber: 3.9 Consensus size: 22
32278512 ATCTTAATTT
* *
32278522 AATAAAATATATAATTTACTAA
1 AATATAATATATAATCTACTAA
32278544 AATCATAATATATAATACTA-TAA
1 AAT-ATAATATATAAT-CTACTAA
* *
32278567 AATATAATTTAAATAAT-TATTATTA
1 AATATAA--TATATAATCTACTA--A
*
32278592 AATATAATTTATAATCTACT
1 AATATAATATATAATCTACT
32278612 TTATTATTAT
Statistics
Matches: 54, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
22 9 0.17
23 25 0.46
24 12 0.22
25 8 0.15
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (22 bp):
AATATAATATATAATCTACTAA
Found at i:32278598 original size:32 final size:32
Alignment explanation
Indices: 32278562--32278625 Score: 74
Period size: 32 Copynumber: 2.0 Consensus size: 32
32278552 TATATAATAC
*
32278562 TATAAAATATAATTTAAATAATTATTATTAAA
1 TATAAAATATAATCTAAATAATTATTATTAAA
** ** *
32278594 TATAATTTATAATCTACTTTATTATTATTAAA
1 TATAAAATATAATCTAAATAATTATTATTAAA
32278626 CTGCAATACA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (32 bp):
TATAAAATATAATCTAAATAATTATTATTAAA
Found at i:32281048 original size:21 final size:20
Alignment explanation
Indices: 32281022--32281067 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
32281012 TAAATTTTAA
*
32281022 TATTTTAATTTCATTTTGATG
1 TATTTTAATGT-ATTTTGATG
*
32281043 TATTTTGATGTATTTTGATG
1 TATTTTAATGTATTTTGATG
32281063 TATTT
1 TATTT
32281068 CAATCATTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 14 0.61
21 9 0.39
ACGTcount: A:0.22, C:0.02, G:0.13, T:0.63
Consensus pattern (20 bp):
TATTTTAATGTATTTTGATG
Found at i:32281049 original size:10 final size:10
Alignment explanation
Indices: 32281034--32281067 Score: 68
Period size: 10 Copynumber: 3.4 Consensus size: 10
32281024 TTTTAATTTC
32281034 ATTTTGATGT
1 ATTTTGATGT
32281044 ATTTTGATGT
1 ATTTTGATGT
32281054 ATTTTGATGT
1 ATTTTGATGT
32281064 ATTT
1 ATTT
32281068 CAATCATTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.21, C:0.00, G:0.18, T:0.62
Consensus pattern (10 bp):
ATTTTGATGT
Found at i:32281087 original size:29 final size:29
Alignment explanation
Indices: 32281053--32281111 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
32281043 TATTTTGATG
32281053 TATTTTGATGTATTTCAATCATTATCGAT
1 TATTTTGATGTATTTCAATCATTATCGAT
32281082 TATTTTGATGTATTTCAATCATTATCGAT
1 TATTTTGATGTATTTCAATCATTATCGAT
32281111 T
1 T
32281112 TATATAGTCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.27, C:0.10, G:0.10, T:0.53
Consensus pattern (29 bp):
TATTTTGATGTATTTCAATCATTATCGAT
Found at i:32289284 original size:6 final size:6
Alignment explanation
Indices: 32289273--32289320 Score: 69
Period size: 6 Copynumber: 7.5 Consensus size: 6
32289263 TATTCTAAAT
32289273 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA GTAAAAAA TAATAAA TAA
1 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA -T-AAAAA TAA-AAA TAA
32289321 CAAAGCTAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
6 26 0.67
7 8 0.21
8 5 0.13
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (6 bp):
TAAAAA
Found at i:32289284 original size:7 final size:7
Alignment explanation
Indices: 32289269--32289320 Score: 56
Period size: 7 Copynumber: 7.9 Consensus size: 7
32289259 AGCCTATTCT
*
32289269 AAATTAA
1 AAATAAA
32289276 AAAT-AA
1 AAATAAA
32289282 AAAT-AA
1 AAATAAA
32289288 AAAT-AA
1 AAATAAA
32289294 AAATAAA
1 AAATAAA
*
32289301 AAGTAAA
1 AAATAAA
*
32289308 AAATAAT
1 AAATAAA
32289315 AAATAA
1 AAATAA
32289321 CAAAGCTAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
6 18 0.44
7 23 0.56
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (7 bp):
AAATAAA
Found at i:32301327 original size:14 final size:14
Alignment explanation
Indices: 32301308--32301335 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
32301298 TTATAGTTTT
32301308 TATAATTTTTTATA
1 TATAATTTTTTATA
32301322 TATAATTTTTTATA
1 TATAATTTTTTATA
32301336 ATTTTTTGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (14 bp):
TATAATTTTTTATA
Found at i:32308219 original size:17 final size:17
Alignment explanation
Indices: 32308197--32308235 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
32308187 TTTTATTTTT
*
32308197 AAAAATACATAAAACAC
1 AAAAATACAGAAAACAC
* *
32308214 AAAAATAGAGAAAATAC
1 AAAAATACAGAAAACAC
32308231 AAAAA
1 AAAAA
32308236 AATTGTAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.74, C:0.10, G:0.05, T:0.10
Consensus pattern (17 bp):
AAAAATACAGAAAACAC
Found at i:32309471 original size:13 final size:12
Alignment explanation
Indices: 32309437--32309479 Score: 50
Period size: 13 Copynumber: 3.4 Consensus size: 12
32309427 CTATATAATT
32309437 AAATTTTTATATA
1 AAATTTTTATA-A
*
32309450 ATATTTTTATAA
1 AAATTTTTATAA
*
32309462 AAATTATTTAAAA
1 AAATT-TTTATAA
32309475 AAATT
1 AAATT
32309480 AAACCACCCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
12 5 0.19
13 21 0.81
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (12 bp):
AAATTTTTATAA
Found at i:32310220 original size:57 final size:57
Alignment explanation
Indices: 32310151--32310264 Score: 228
Period size: 57 Copynumber: 2.0 Consensus size: 57
32310141 ACTCCAGTTA
32310151 AAATTTGGATGTTGTTTCCACCTTGGATTGTATGTGTTGGAGTAGGAATTGTTGTTG
1 AAATTTGGATGTTGTTTCCACCTTGGATTGTATGTGTTGGAGTAGGAATTGTTGTTG
32310208 AAATTTGGATGTTGTTTCCACCTTGGATTGTATGTGTTGGAGTAGGAATTGTTGTTG
1 AAATTTGGATGTTGTTTCCACCTTGGATTGTATGTGTTGGAGTAGGAATTGTTGTTG
32310265 CTACGATTAA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 57 1.00
ACGTcount: A:0.19, C:0.07, G:0.30, T:0.44
Consensus pattern (57 bp):
AAATTTGGATGTTGTTTCCACCTTGGATTGTATGTGTTGGAGTAGGAATTGTTGTTG
Found at i:32313717 original size:17 final size:17
Alignment explanation
Indices: 32313697--32313731 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
32313687 ATTTACAACG
32313697 GTGATGAGCTTGTGGCA
1 GTGATGAGCTTGTGGCA
*
32313714 GTGATGGGCTTGTGGCA
1 GTGATGAGCTTGTGGCA
32313731 G
1 G
32313732 CGACAAGGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.14, C:0.11, G:0.46, T:0.29
Consensus pattern (17 bp):
GTGATGAGCTTGTGGCA
Found at i:32330597 original size:16 final size:16
Alignment explanation
Indices: 32330567--32330608 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
32330557 TTATCTTTTA
*
32330567 TTTTTGAAATCATAACT
1 TTTTTTAAATCATAA-T
32330584 TTTTTTAAAT-ATAAT
1 TTTTTTAAATCATAAT
32330599 TATTTTTAAA
1 T-TTTTTAAA
32330609 AACTATCTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 2 0.09
16 12 0.52
17 9 0.39
ACGTcount: A:0.38, C:0.05, G:0.02, T:0.55
Consensus pattern (16 bp):
TTTTTTAAATCATAAT
Found at i:32331489 original size:3 final size:3
Alignment explanation
Indices: 32331481--32331509 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
32331471 AGGTGATCTT
32331481 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
32331510 TATTTATGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:32342504 original size:20 final size:18
Alignment explanation
Indices: 32342466--32342504 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 18
32342456 ATTCAAATAT
*
32342466 ATCATATAACATTCTTAA
1 ATCATATAACATGCTTAA
32342484 ATCATATTAATCATGCTTAA
1 ATCATA-TAA-CATGCTTAA
32342504 A
1 A
32342505 CACACAAGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 6 0.33
19 3 0.17
20 9 0.50
ACGTcount: A:0.44, C:0.15, G:0.03, T:0.38
Consensus pattern (18 bp):
ATCATATAACATGCTTAA
Found at i:32343439 original size:12 final size:12
Alignment explanation
Indices: 32343422--32343451 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
32343412 GCACATGGCT
32343422 GTGTCCCAGCCC
1 GTGTCCCAGCCC
*
32343434 GTGTCCCAGCCT
1 GTGTCCCAGCCC
32343446 GTGTCC
1 GTGTCC
32343452 AACCCCATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.43, G:0.27, T:0.23
Consensus pattern (12 bp):
GTGTCCCAGCCC
Found at i:32346269 original size:31 final size:31
Alignment explanation
Indices: 32346231--32346292 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
32346221 ATATAAATGA
32346231 GTACTCAAATCCTATGGCATGCCAACTATAT
1 GTACTCAAATCCTATGGCATGCCAACTATAT
32346262 GTACTCAAATCCTATGGCATGCCAACTATAT
1 GTACTCAAATCCTATGGCATGCCAACTATAT
32346293 CTAATGTTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.29
Consensus pattern (31 bp):
GTACTCAAATCCTATGGCATGCCAACTATAT
Found at i:32346948 original size:31 final size:32
Alignment explanation
Indices: 32346877--32346951 Score: 82
Period size: 33 Copynumber: 2.3 Consensus size: 32
32346867 GATTTGGTAT
* * * *
32346877 AATTATATATATGAAACTTTGACTTTGGTTCA
1 AATTATATACATAAAACTTTGAATTTGATTCA
32346909 AATATATATACATAAAACTTT-AATATTGATTC-
1 AAT-TATATACATAAAACTTTGAAT-TTGATTCA
32346941 AATTATATACA
1 AATTATATACA
32346952 CATTTTAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
31 8 0.22
32 8 0.22
33 21 0.57
ACGTcount: A:0.43, C:0.09, G:0.07, T:0.41
Consensus pattern (32 bp):
AATTATATACATAAAACTTTGAATTTGATTCA
Found at i:32347286 original size:2 final size:2
Alignment explanation
Indices: 32347279--32347304 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
32347269 GAGATTTCTT
32347279 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
32347305 AACTAACTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:32348321 original size:21 final size:21
Alignment explanation
Indices: 32348297--32348340 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
32348287 AGTTTCCCTC
* * *
32348297 TCTTGTAATTATGTAGTCATT
1 TCTTGTAATAATCTACTCATT
32348318 TCTTGTAATAATCTACTCATT
1 TCTTGTAATAATCTACTCATT
32348339 TC
1 TC
32348341 AAATCTTCCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.25, C:0.16, G:0.09, T:0.50
Consensus pattern (21 bp):
TCTTGTAATAATCTACTCATT
Found at i:32349211 original size:31 final size:31
Alignment explanation
Indices: 32349173--32349236 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
32349163 GATTCATATA
32349173 ATATATGTTTTGTAACACCCCTACCCGACCC
1 ATATATGTTTTGTAACACCCCTACCCGACCC
* *
32349204 ATATATGTTTTGTAACACCCCTGCCTGACCC
1 ATATATGTTTTGTAACACCCCTACCCGACCC
32349235 AT
1 AT
32349237 TCGCTAGATC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.25, C:0.33, G:0.11, T:0.31
Consensus pattern (31 bp):
ATATATGTTTTGTAACACCCCTACCCGACCC
Found at i:32351096 original size:5 final size:5
Alignment explanation
Indices: 32351082--32351110 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
32351072 TTTGACTAAG
32351082 TAAAA T-AAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA
32351111 GTTCCAATGC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 19 0.83
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
TAAAA
Found at i:32353390 original size:5 final size:5
Alignment explanation
Indices: 32353380--32353411 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
32353370 AAAGTGTGAA
32353380 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
32353412 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:32353405 original size:9 final size:9
Alignment explanation
Indices: 32353381--32353411 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
32353371 AAGTGTGAAA
32353381 AAATAAAAT
1 AAATAAAAT
32353390 AAAATAAAAT
1 -AAATAAAAT
32353400 AAATAAAAT
1 AAATAAAAT
32353409 AAA
1 AAA
32353412 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:32357746 original size:5 final size:5
Alignment explanation
Indices: 32357736--32357767 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
32357726 AATTTGTGAA
32357736 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
32357768 GAACACATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:32357761 original size:9 final size:9
Alignment explanation
Indices: 32357737--32357767 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
32357727 ATTTGTGAAA
32357737 AAATAAAAT
1 AAATAAAAT
32357746 AAAATAAAAT
1 -AAATAAAAT
32357756 AAATAAAAT
1 AAATAAAAT
32357765 AAA
1 AAA
32357768 GAACACATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:32359668 original size:16 final size:15
Alignment explanation
Indices: 32359638--32359676 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
32359628 TATGCAAAGT
* *
32359638 TAATAATAATTAATA
1 TAATTATAATAAATA
32359653 TATATTATAATAAATA
1 TA-ATTATAATAAATA
32359669 TAATTATA
1 TAATTATA
32359677 TACTAGTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
TAATTATAATAAATA
Found at i:32361573 original size:40 final size:40
Alignment explanation
Indices: 32361527--32361751 Score: 263
Period size: 40 Copynumber: 5.6 Consensus size: 40
32361517 CTTGCGCAAG
* * *
32361527 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
32361567 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * *
32361607 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCAGAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
32361647 GCCTTCGGGTCTTAGCCCGGATATA-ACAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * * *
32361687 GCCTTCAGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
32361728 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
32361752 CATTCGAATA
Statistics
Matches: 154, Mismatches: 28, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
39 1 0.01
40 125 0.81
41 28 0.18
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:32361622 original size:80 final size:80
Alignment explanation
Indices: 32361491--32361751 Score: 285
Period size: 80 Copynumber: 3.3 Consensus size: 80
32361481 CTCAAGTAAT
* * * * * * *
32361491 CTTCGGGATTTAG-CCGGATATAACTACTTGCGC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
32361554 CACTAGCATAAATGC
66 CACTAGCACAAATGC
* * * *
32361569 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATA-ACAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
* *
32361633 TCGCTAGCAGAAATGC
65 TCACTAGCACAAATGC
* * * * * * *
32361649 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGCCTTCAGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
32361714 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
32361730 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
32361752 CATTCGAATA
Statistics
Matches: 151, Mismatches: 27, Indels: 7
0.82 0.15 0.04
Matches are distributed among these distances:
78 12 0.08
79 15 0.10
80 92 0.61
81 32 0.21
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:32361712 original size:120 final size:121
Alignment explanation
Indices: 32361527--32361751 Score: 294
Period size: 120 Copynumber: 1.9 Consensus size: 121
32361517 CTTGCGCAAG
* ** * *
32361527 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATA
1 GCCTTCGGGTCTTAGCCCGGATATGAACACTAGCACAAATGCCTTCGAGACTTAGCCCGGATATA
* * **
32361592 GTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCAGAAAT
66 GTCACCTAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAATCGCTAGCAGAAAT
* * * *
32361647 GCCTTCGGGTCTTAGCCCGGATAT-AACAACTCGCACGAATGCCTTC-AGATCTTAGTCCGGTTA
1 GCCTTCGGGTCTTAGCCCGGATATGAAC-ACTAGCACAAATGCCTTCGAGA-CTTAGCCCGGATA
32361710 TAGTCACCTAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT
64 TAGTCACCTAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT
32361752 CATTCGAATA
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
119 3 0.03
120 54 0.61
121 32 0.36
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (121 bp):
GCCTTCGGGTCTTAGCCCGGATATGAACACTAGCACAAATGCCTTCGAGACTTAGCCCGGATATA
GTCACCTAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAATCGCTAGCAGAAAT
Found at i:32366114 original size:28 final size:28
Alignment explanation
Indices: 32366079--32366136 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
32366069 ATGGGGTAAA
32366079 TTATACCCGCATCTAACAACTTGATAAT
1 TTATACCCGCATCTAACAACTTGATAAT
*
32366107 TTATACCCGCATCTAACAACTTGATGAT
1 TTATACCCGCATCTAACAACTTGATAAT
32366135 TT
1 TT
32366137 CTTTCTTTAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.33, C:0.24, G:0.09, T:0.34
Consensus pattern (28 bp):
TTATACCCGCATCTAACAACTTGATAAT
Found at i:32382804 original size:46 final size:46
Alignment explanation
Indices: 32382754--32382926 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
32382744 TGGTTGAGCA
32382754 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
32382800 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
32382845 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
32382893 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
32382927 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:32382910 original size:93 final size:93
Alignment explanation
Indices: 32382751--32382921 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
32382741 GGATGGTTGA
* *
32382751 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
32382816 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
32382844 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
32382909 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
32382922 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:32384912 original size:57 final size:57
Alignment explanation
Indices: 32384777--32384925 Score: 160
Period size: 57 Copynumber: 2.6 Consensus size: 57
32384767 CAATCTTGTA
* * *
32384777 ATATAAAGGATTTAGCCTGGACGGGTAATCCCGATATCACACCCCTCGAGCATACATT
1 ATATAAAGGATTTAGCCTGGACTGGTAAT-CCTATATCACACCCCTCAAGCATACATT
* * * * * *
32384835 ATGAT-TAGGGTTTAGTCTGGACTGGTAATCCTA-ATCGA-GCTCCTCTAAGCATACGTT
1 AT-ATAAAGGATTTAGCCTGGACTGGTAATCCTATATC-ACACCCCTC-AAGCATACATT
32384892 ATATAAAGGATTTAGCCTGGACTGGTAATCCTAT
1 ATATAAAGGATTTAGCCTGGACTGGTAATCCTAT
32384926 TAAATGATAT
Statistics
Matches: 74, Mismatches: 12, Indels: 10
0.77 0.12 0.10
Matches are distributed among these distances:
56 10 0.14
57 40 0.54
58 22 0.30
59 2 0.03
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.30
Consensus pattern (57 bp):
ATATAAAGGATTTAGCCTGGACTGGTAATCCTATATCACACCCCTCAAGCATACATT
Found at i:32386971 original size:39 final size:39
Alignment explanation
Indices: 32386926--32387065 Score: 208
Period size: 39 Copynumber: 3.6 Consensus size: 39
32386916 GCTCTGATAA
* * *
32386926 GCTTCAGTTTGGCTTTGGGCTTCCGTTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTTGGGCTTCCGTTTAGCACTTATGT
*
32386965 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTTGGGCTTCCGTTTAGCACTTATGT
*
32387004 GCTTCAGTTAGCCTTTGGGATTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTTGGGCTTCCGTTTAGCACTTATGT
* * *
32387043 GCTTCAGCTAGACTTCGGGCTTC
1 GCTTCAGTTAGCCTTTGGGCTTC
32387066 AGATCACGAT
Statistics
Matches: 91, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 91 1.00
ACGTcount: A:0.12, C:0.24, G:0.25, T:0.39
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTTGGGCTTCCGTTTAGCACTTATGT
Found at i:32392383 original size:130 final size:130
Alignment explanation
Indices: 32392113--32392385 Score: 300
Period size: 130 Copynumber: 2.1 Consensus size: 130
32392103 TTCATCGTCT
* * ***
32392113 GTGATGCTATAGTACCTTTCAACCATGGTCTTACACATTTTTTCTATCAACTCATCTTTTGATGC
1 GTGATGCCATAGTACCTTTCAACCATGGTCTTACACATTTTTTCCATCAACTCATAACTTGATGC
* ** ** * * * *
32392178 CATATCATCTTTCAGTTATGGTCTTACTCAATAAAACTTGTGTTTATCGTCCCGCTAGGCTATCT
66 CATAGCATCTTTCAACTATGGTCTTACTCAATAAAACCCGTGTTTATAGTCCAGCTAGGCTACCA
* *
32392243 GTGATGCCATAGTACCTTTCAACCATGGTCTTACACATTTTTTCCGTCAACTCATAACTTGATGT
1 GTGATGCCATAGTACCTTTCAACCATGGTCTTACACATTTTTTCCATCAACTCATAACTTGATGC
* * * * *
32392308 CATAGCTTCTTTTAACTATGGTCTTACTCATTATAACCCCGTGTTTACTATTCCAG-T-GGACTA
66 CATAGCATCTTTCAACTATGGTCTTACTCAATA-AAACCCGTGTTTA-TAGTCCAGCTAGG-CTA
32392371 CCA
128 CCA
*
32392374 G-GATTCCATAGT
1 GTGATGCCATAGT
32392386 CCCACTATGG
Statistics
Matches: 118, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
130 97 0.82
131 16 0.14
132 5 0.04
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.39
Consensus pattern (130 bp):
GTGATGCCATAGTACCTTTCAACCATGGTCTTACACATTTTTTCCATCAACTCATAACTTGATGC
CATAGCATCTTTCAACTATGGTCTTACTCAATAAAACCCGTGTTTATAGTCCAGCTAGGCTACCA
Found at i:32400537 original size:25 final size:26
Alignment explanation
Indices: 32400483--32400537 Score: 64
Period size: 25 Copynumber: 2.2 Consensus size: 26
32400473 TTGCATATTT
32400483 TATAATAAGTTAAATATGTAAATTAA
1 TATAATAAGTTAAATATGTAAATTAA
32400509 -ATAATATA-TTAATATATGT-AA-TAA
1 TATAATA-AGTTAA-ATATGTAAATTAA
32400533 TATAA
1 TATAA
32400538 CATAAAATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
24 3 0.12
25 16 0.62
26 7 0.27
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (26 bp):
TATAATAAGTTAAATATGTAAATTAA
Found at i:32405290 original size:35 final size:35
Alignment explanation
Indices: 32405239--32405307 Score: 129
Period size: 35 Copynumber: 2.0 Consensus size: 35
32405229 AATAATCTCT
32405239 TCGTCACCTACCCTAAGTACCAATTTACCATCACC
1 TCGTCACCTACCCTAAGTACCAATTTACCATCACC
*
32405274 TCGTCACCTACTCTAAGTACCAATTTACCATCAC
1 TCGTCACCTACCCTAAGTACCAATTTACCATCAC
32405308 TCACATCAGT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.29, C:0.38, G:0.06, T:0.28
Consensus pattern (35 bp):
TCGTCACCTACCCTAAGTACCAATTTACCATCACC
Found at i:32414386 original size:23 final size:22
Alignment explanation
Indices: 32414333--32414440 Score: 119
Period size: 22 Copynumber: 4.9 Consensus size: 22
32414323 GAGTCATGGT
*
32414333 CGGTAAGCTCCT-TCGAGCTGAA
1 CGGTAAGCT-CTATTGAGCTGAA
* * *
32414355 CAGTAAGCTCTATTAAGTTGAAA
1 CGGTAAGCTCTATTGAGCTG-AA
*
32414378 CGGCAAGCTCTATTGAGCTGAA
1 CGGTAAGCTCTATTGAGCTGAA
*
32414400 CGGTAACCTCTATTGAGCTGAA
1 CGGTAAGCTCTATTGAGCTGAA
* *
32414422 CGGTAAGCTCCAATGAGCT
1 CGGTAAGCTCTATTGAGCT
32414441 AAAATAGTAA
Statistics
Matches: 71, Mismatches: 13, Indels: 4
0.81 0.15 0.05
Matches are distributed among these distances:
21 2 0.03
22 51 0.72
23 18 0.25
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (22 bp):
CGGTAAGCTCTATTGAGCTGAA
Found at i:32414411 original size:45 final size:44
Alignment explanation
Indices: 32414347--32414440 Score: 116
Period size: 45 Copynumber: 2.1 Consensus size: 44
32414337 AAGCTCCTTC
* * * *
32414347 GAGCTGAACAGTAAGCTCTATTAAGTTGAAACGGCAAGCTCTATT
1 GAGCTGAACAGTAACCTCTATTAAGCTG-AACGGCAAGCTCCAAT
* * *
32414392 GAGCTGAACGGTAACCTCTATTGAGCTGAACGGTAAGCTCCAAT
1 GAGCTGAACAGTAACCTCTATTAAGCTGAACGGCAAGCTCCAAT
32414436 GAGCT
1 GAGCT
32414441 AAAATAGTAA
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
44 18 0.43
45 24 0.57
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.24
Consensus pattern (44 bp):
GAGCTGAACAGTAACCTCTATTAAGCTGAACGGCAAGCTCCAAT
Found at i:32417201 original size:50 final size:50
Alignment explanation
Indices: 32417130--32417273 Score: 198
Period size: 50 Copynumber: 2.9 Consensus size: 50
32417120 CACATAGTGA
* * * * *
32417130 GATGCCAATGGCATATCCCAGATATGGTCTTACATGGGTTCACACATATC
1 GATGCCAATGCCATGTACCAGACATGGTCTTACATGGGATCACACATATC
* *
32417180 GATGCCAATGCCCTGTACCAGACATGGTCTTACATGGGATCACGCATATC
1 GATGCCAATGCCATGTACCAGACATGGTCTTACATGGGATCACACATATC
* * *
32417230 GATGCCAATGCCATGTCCCCGACATGGTTTTACATGGGATCACA
1 GATGCCAATGCCATGTACCAGACATGGTCTTACATGGGATCACA
32417274 TATCGAAACT
Statistics
Matches: 82, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
50 82 1.00
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (50 bp):
GATGCCAATGCCATGTACCAGACATGGTCTTACATGGGATCACACATATC
Found at i:32420593 original size:47 final size:46
Alignment explanation
Indices: 32420505--32420807 Score: 217
Period size: 47 Copynumber: 6.5 Consensus size: 46
32420495 GTCAATGCCG
* *
32420505 TGTCCCAGACA-GGTCTTACACT-GACT--GATGTCAAGCCGATGCCA
1 TGTCCCAGACATGGTCTTACACTAG-CTCACATCTCAAGCCGATG-CA
* *
32420549 TGTCCTAGACATGGTCTTACACTAGCTCACATCTCAAGTCGATGCCA
1 TGTCCCAGACATGGTCTTACACTAGCTCACATCTCAAGCCGATG-CA
* * * * *
32420596 TGTCCCAGAAATGGTCTTACACTAACT-ATCATCATCGAGGCTGATGCG
1 TGTCCCAGACATGGTCTTACACTAGCTCA-CATC-TC-AAGCCGATGCA
* * * * * * *
32420644 TGTCCTAGACA-CGTCTTACACTAGCACTCGTCTCAATACTGATGCCA
1 TGTCCCAGACATGGTCTTACACTAGCTCACATCTCAA-GCCGATG-CA
* * * *
32420691 TGTCCCAGACATGGTCTTACACTAGTACGCATATCTCGAGGCCGGTGCA
1 TGTCCCAGACATGGTCTTACACTAG--CTCACATCTC-AAGCCGATGCA
* * * * *
32420740 TGTCCTAGACAT-GTCTTACGCTGGCTCTCGTCTCAAAGCCGATGCA
1 TGTCCCAGACATGGTCTTACACTAGCTCACATCTC-AAGCCGATGCA
32420786 TGTCCCAGACAT-GTCTTACACT
1 TGTCCCAGACATGGTCTTACACT
32420808 GATGCACATA
Statistics
Matches: 202, Mismatches: 43, Indels: 26
0.75 0.16 0.10
Matches are distributed among these distances:
44 10 0.05
45 14 0.07
46 45 0.22
47 69 0.34
48 34 0.17
49 19 0.09
50 10 0.05
51 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (46 bp):
TGTCCCAGACATGGTCTTACACTAGCTCACATCTCAAGCCGATGCA
Found at i:32420770 original size:96 final size:94
Alignment explanation
Indices: 32420499--32420807 Score: 316
Period size: 95 Copynumber: 3.3 Consensus size: 94
32420489 ATCTGTGTCA
* * * * *
32420499 ATGCCGTGTCCCAGACA-GGTCTTACACTGA-C-TGAT-GTC-AAGCCGATGCCATGTCCTAGAC
1 ATGCCATGTCCCAGACATGGTCTTACACTAACCATCATCATCGAGGCCGATG-CATGTCCTAGAC
* *
32420559 ATGGTCTTACACTAGCTCACATCTCAAGT-CG
65 AT-GTCTTACACTAGCTCTCGTCTCAA-TACG
* * * *
32420590 ATGCCATGTCCCAGAAATGGTCTTACACTAACTATCATCATCGAGGCTGATGCGTGTCCTAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTAACCATCATCATCGAGGCCGATGCATGTCCTAGACA
* *
32420655 CGTCTTACACTAGCACTCGTCTCAATACTG
66 TGTCTTACACTAGCTCTCGTCTCAATAC-G
*
32420685 ATGCCATGTCCCAGACATGGTCTTACACTAGTACGCAT-ATC-TCGAGGCCGGTGCATGTCCTAG
1 ATGCCATGTCCCAGACATGGTCTTACACTA--AC-CATCATCATCGAGGCCGATGCATGTCCTAG
* *
32420748 ACATGTCTTACGCTGGCTCTCGTCTCAA-AGCCG
63 ACATGTCTTACACTAGCTCTCGTCTCAATA--CG
32420781 ATG-CATGTCCCAGACAT-GTCTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
32420808 GATGCACATA
Statistics
Matches: 184, Mismatches: 22, Indels: 21
0.81 0.10 0.09
Matches are distributed among these distances:
91 15 0.08
92 12 0.07
93 1 0.01
94 35 0.19
95 59 0.32
96 54 0.29
97 6 0.03
98 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (94 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAACCATCATCATCGAGGCCGATGCATGTCCTAGACA
TGTCTTACACTAGCTCTCGTCTCAATACG
Found at i:32420784 original size:142 final size:142
Alignment explanation
Indices: 32420505--32420807 Score: 314
Period size: 142 Copynumber: 2.2 Consensus size: 142
32420495 GTCAATGCCG
* * * * *
32420505 TGTCCCAGACAGGTCTTACACT-G-ACT-GATGTCAA-GCCGATGCCATGTCCTAGACATGGTCT
1 TGTCCCAGACACGTCTTACACTAGCACTCG-TCTCAATACTGATGCCATGTCCCAGACATGGTCT
* *
32420566 TACACTAGCTCACATCTCAAGTCGATGCCATGTCCCAGAAATGGTCTTACACTAACTATCATCAT
65 TACACTAGCGCACATCTCAAGCCGATGCCATGTCCCAGAAATGGTCTTACACTAACTATCATCAT
* * * *
32420631 CGAGGCTGATGCG
130 CAAAGCCGATGCA
*
32420644 TGTCCTAGACACGTCTTACACTAGCACTCGTCTCAATACTGATGCCATGTCCCAGACATGGTCTT
1 TGTCCCAGACACGTCTTACACTAGCACTCGTCTCAATACTGATGCCATGTCCCAGACATGGTCTT
* * * * * * ** * *
32420709 ACACTAGTACGCATATCTCGAGGCCGGTG-CATGTCCTAGACAT-GTCTTACGCTGGCTCTCGTC
66 ACACTAG--CGCACATCTC-AAGCCGATGCCATGTCCCAGAAATGGTCTTACACTAACTATCATC
32420772 -TCAAAGCCGATGCA
128 ATCAAAGCCGATGCA
*
32420786 TGTCCCAGACATGTCTTACACT
1 TGTCCCAGACACGTCTTACACT
32420808 GATGCACATA
Statistics
Matches: 133, Mismatches: 24, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
139 20 0.15
140 1 0.01
141 8 0.06
142 63 0.47
143 15 0.11
144 20 0.15
145 6 0.05
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (142 bp):
TGTCCCAGACACGTCTTACACTAGCACTCGTCTCAATACTGATGCCATGTCCCAGACATGGTCTT
ACACTAGCGCACATCTCAAGCCGATGCCATGTCCCAGAAATGGTCTTACACTAACTATCATCATC
AAAGCCGATGCA
Found at i:32423507 original size:50 final size:50
Alignment explanation
Indices: 32423440--32423581 Score: 189
Period size: 50 Copynumber: 2.9 Consensus size: 50
32423430 CACATAGTGA
* * *
32423440 GATGCCAATGGCA--TCCCAGATAAGGTCTTACATGGGTTCACACATATC
1 GATGCCAATGCCATGTCCCAGATATGGTCTTACATGGGATCACACATATC
* * *
32423488 GATGCCAATGTCATGTCCCAAACATGGTCTTACATGGGATCACACATATC
1 GATGCCAATGCCATGTCCCAGATATGGTCTTACATGGGATCACACATATC
* * *
32423538 GATGTCAATGCCATGTCCCTGATATGGTTTTACATGGGATCACA
1 GATGCCAATGCCATGTCCCAGATATGGTCTTACATGGGATCACA
32423582 TATCGAAACT
Statistics
Matches: 81, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
48 12 0.15
50 69 0.85
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.27
Consensus pattern (50 bp):
GATGCCAATGCCATGTCCCAGATATGGTCTTACATGGGATCACACATATC
Found at i:32428876 original size:18 final size:17
Alignment explanation
Indices: 32428836--32428870 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
32428826 TAAAATATAT
32428836 TATTTTTTTAATTGAAAA
1 TATTTTTTT-ATTGAAAA
32428854 TATTTTTTT-TTGAAAA
1 TATTTTTTTATTGAAAA
32428870 T
1 T
32428871 TGATTTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
18 9 0.53
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (17 bp):
TATTTTTTTATTGAAAA
Found at i:32428942 original size:18 final size:19
Alignment explanation
Indices: 32428907--32428945 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
32428897 TCTTTTGGGG
32428907 TTTTTGCTTAAAATATTTT
1 TTTTTGCTTAAAATATTTT
*
32428926 TTTTTGTTTAACAAT-TTTT
1 TTTTTGCTTAA-AATATTTT
32428945 T
1 T
32428946 ACTAAAATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 15 0.83
20 3 0.17
ACGTcount: A:0.23, C:0.05, G:0.05, T:0.67
Consensus pattern (19 bp):
TTTTTGCTTAAAATATTTT
Found at i:32429049 original size:18 final size:17
Alignment explanation
Indices: 32429018--32429056 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 17
32429008 AATTAAAATT
32429018 TAAAAAATAGTTTATAA
1 TAAAAAATAGTTTATAA
*
32429035 TAAAATAATATTTTATAA
1 TAAAA-AATAGTTTATAA
32429053 TAAA
1 TAAA
32429057 TTATGTTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (17 bp):
TAAAAAATAGTTTATAA
Found at i:32429057 original size:17 final size:17
Alignment explanation
Indices: 32429018--32429068 Score: 57
Period size: 18 Copynumber: 2.9 Consensus size: 17
32429008 AATTAAAATT
* *
32429018 TAAAAAATAGTTTATAA
1 TAAATAATATTTTATAA
32429035 TAAAATAATATTTTATAA
1 T-AAATAATATTTTATAA
* *
32429053 TAAATTATGTTTTATA
1 TAAATAATATTTTATA
32429069 TAAGCTTAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
17 14 0.48
18 15 0.52
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (17 bp):
TAAATAATATTTTATAA
Found at i:32439419 original size:31 final size:32
Alignment explanation
Indices: 32439344--32439429 Score: 97
Period size: 31 Copynumber: 2.8 Consensus size: 32
32439334 CAAAGTTATC
*
32439344 TTAAATATTAAAATAAAAATAAAAATTTAGAA
1 TTAAATAATAAAATAAAAATAAAAATTTAGAA
*
32439376 TTAAA-ACTAAAATAAATAATAAAAA-TTAG-A
1 TTAAATAATAAAATAAA-AATAAAAATTTAGAA
* **
32439406 TTAAATAAAAAAATATCAATAAAA
1 TTAAATAATAAAATAAAAATAAAA
32439430 TAAGATATTA
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
30 13 0.28
31 21 0.45
32 13 0.28
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.28
Consensus pattern (32 bp):
TTAAATAATAAAATAAAAATAAAAATTTAGAA
Found at i:32443306 original size:34 final size:35
Alignment explanation
Indices: 32443268--32443334 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
32443258 CAGTAAAATA
*
32443268 TTTTCCGTAAAATGATTT-TTGAAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTATTGAAAAATATTTTAC
* *
32443302 TTTTCTGTAAAATGATTTATTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTATTGAAAAATATTTT
32443335 CTGGTGTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.33, C:0.06, G:0.12, T:0.49
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTATTGAAAAATATTTTAC
Found at i:32445131 original size:495 final size:493
Alignment explanation
Indices: 32444199--32445322 Score: 2045
Period size: 495 Copynumber: 2.3 Consensus size: 493
32444189 TTTTAAGTTT
* *
32444199 TTTATTTTTGATTTAATCATAGACATTTTAAAAAATAAATACATCAATATA-TTTTATATTGAAT
1 TTTAATTTTGATTTAATCATACACATTTTAAAAAATAAATACATCAATATATTTTTATATTGAAT
* *
32444263 AAATATAAATATTTATGTATGCAATAAATAAATATAAAATGATGTTATATCAATAATTGTATTAA
66 AAATATAAATATTTATGTATGCAATATATAAATATAAAATGATGTTATATCAATAATTGTGTTAA
*
32444328 TAATTTACAAGAACTAGATCAAATTAAAGTTCATATATACAATTTTACCCTGATCCCCATATTTA
131 TAATTTACAAGAACTAGATCAAATTAAAGTTCATATATACAATTGTACCCTGATCCCCATATTTA
*
32444393 TCCCTAAAAGCTAAAAATTAAACCCTGATCCCCAAACATCAAACCTTAAATCCTAGATCATAAAT
196 TCCCTAAAAGCTAAAAATTAAACCCTGATCCCCAAACACCAAACCTTAAATCCTAGATCATAAAT
*
32444458 TCTAAACCCCAAAATAATAAACATTATATCATAACCCCTATCCCTAAACTCTAAACCATAAAACA
261 CCTAAACCCCAAAATAATAAACATTATATCATAACCCCTATCCCTAAACTCTAAACCATAAAACA
*
32444523 TAAACCATAAACCTTTAACCCCAACCCTTAAACCATAATTAGATATTTAATTATATGTACACACC
326 TAAACCATAAACCCTTAACCCCAACCCTTAAACCATAATTAGATATTTAATTATATGTACACACC
*
32444588 TAAATTTTGATAGAGATACATCTCAAAATTATATATGAATTTCGATTTAATATGTAATTGTAGAT
391 TAAATTTTGATAGAGATACATCTCAAAATTATATATGAATTTCGATTTAATATATAATTGTAGAT
32444653 GTGAAATTCTAATTGTGGTTTAAATGTATAATTGAAAC
456 GTGAAATTCTAATTGTGGTTTAAATGTATAATTGAAAC
32444691 TTTAATTTTGATTTAATCATACACATTTTAAAAAATAAATACATCAATATATTTTTATATTGAAT
1 TTTAATTTTGATTTAATCATACACATTTTAAAAAATAAATACATCAATATATTTTTATATTGAAT
32444756 AAATATAAATATTTATGTATGCAATATATAAATATAAAATGATGTTATATCAATAATTGTGTTAA
66 AAATATAAATATTTATGTATGCAATATATAAATATAAAATGATGTTATATCAATAATTGTGTTAA
32444821 TAATTTACAAGAACTAGATCAAATTAAAGTTCATATATACAATTGTA-CCTGATCCCCATACATT
131 TAATTTACAAGAACTAGATCAAATTAAAGTTCATATATACAATTGTACCCTGATCCCCAT--ATT
* * * *
32444885 TATCCCTAAATGCTAAAAATTAAACTCTGATCCCCAAACGCCAAACCTTAAATCCTAGATTATAA
194 TATCCCTAAAAGCTAAAAATTAAACCCTGATCCCCAAACACCAAACCTTAAATCCTAGATCATAA
*
32444950 ATCCTAAACCCCAAAATAATGAACATTATATCATAACCCCTATCCCCTAAACTCTAAACCATAAA
259 ATCCTAAACCCCAAAATAATAAACATTATATCATAACCCCTAT-CCCTAAACTCTAAACCATAAA
*
32445015 ACATAAACTATAAACCCTTAACCCCAACCCTTAAACCATAATTAGATATTTAATTATATGTACAC
323 ACATAAACCATAAACCCTTAACCCCAACCCTTAAACCATAATTAGATATTTAATTATATGTACAC
* *
32445080 ACCTAAATTTTGATAGAGATACATCTCAGAATTATATATGAATTTCGATTTAATGTATAATTGTA
388 ACCTAAATTTTGATAGAGATACATCTCAAAATTATATATGAATTTCGATTTAATATATAATTGTA
32445145 GATGTGAAATTCTAATTGTGGTTTAAATGTATAATTGAAAC
453 GATGTGAAATTCTAATTGTGGTTTAAATGTATAATTGAAAC
32445186 TTTAATTTTGATTTAATCATACACATTTTAAAAAATAAATACATCAATATATTTTTATATTGAAT
1 TTTAATTTTGATTTAATCATACACATTTTAAAAAATAAATACATCAATATATTTTTATATTGAAT
*
32445251 AAATATAAATATTTATGTATGCAATATATAAATATAAAATGATGTTATATCAATAATTATGTTAA
66 AAATATAAATATTTATGTATGCAATATATAAATATAAAATGATGTTATATCAATAATTGTGTTAA
32445316 TAATTTA
131 TAATTTA
32445323 TGCTTTTGGG
Statistics
Matches: 610, Mismatches: 18, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
492 61 0.10
493 122 0.20
494 104 0.17
495 323 0.53
ACGTcount: A:0.43, C:0.15, G:0.07, T:0.35
Consensus pattern (493 bp):
TTTAATTTTGATTTAATCATACACATTTTAAAAAATAAATACATCAATATATTTTTATATTGAAT
AAATATAAATATTTATGTATGCAATATATAAATATAAAATGATGTTATATCAATAATTGTGTTAA
TAATTTACAAGAACTAGATCAAATTAAAGTTCATATATACAATTGTACCCTGATCCCCATATTTA
TCCCTAAAAGCTAAAAATTAAACCCTGATCCCCAAACACCAAACCTTAAATCCTAGATCATAAAT
CCTAAACCCCAAAATAATAAACATTATATCATAACCCCTATCCCTAAACTCTAAACCATAAAACA
TAAACCATAAACCCTTAACCCCAACCCTTAAACCATAATTAGATATTTAATTATATGTACACACC
TAAATTTTGATAGAGATACATCTCAAAATTATATATGAATTTCGATTTAATATATAATTGTAGAT
GTGAAATTCTAATTGTGGTTTAAATGTATAATTGAAAC
Found at i:32445622 original size:41 final size:41
Alignment explanation
Indices: 32445576--32445718 Score: 189
Period size: 41 Copynumber: 3.5 Consensus size: 41
32445566 TACTTTTTTA
* *
32445576 CGGCGTTTTTCCAAAAGTGCCACTAAAACCTCGACCTATAG
1 CGGCGTTTTTCCAAAAGCGCCACTAAAACCTCGATCTATAG
* *
32445617 CGGCGTTTTTCTAAAAGCGCCGCTAAAACCTCGATCTATAG
1 CGGCGTTTTTCCAAAAGCGCCACTAAAACCTCGATCTATAG
* ** * *
32445658 CGGCGCTTTTGGAAAAACGCCA-TTAAACCTCGATCTATAG
1 CGGCGTTTTTCCAAAAGCGCCACTAAAACCTCGATCTATAG
*
32445698 TGGCGTTTTTCCAAAAGCGCC
1 CGGCGTTTTTCCAAAAGCGCC
32445719 GCTATTGTTC
Statistics
Matches: 87, Mismatches: 15, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
40 33 0.38
41 54 0.62
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (41 bp):
CGGCGTTTTTCCAAAAGCGCCACTAAAACCTCGATCTATAG
Found at i:32445760 original size:41 final size:41
Alignment explanation
Indices: 32445708--32445786 Score: 122
Period size: 41 Copynumber: 1.9 Consensus size: 41
32445698 TGGCGTTTTT
* *
32445708 CCAAAAGCGCCGCTATTGTTCAGTTTTTAGCGACGTTTGGA
1 CCAAAAACGCCGCTATTGCTCAGTTTTTAGCGACGTTTGGA
* *
32445749 CCAAAAACGCCGCTATTGCTCAGTTTTTTGCGGCGTTT
1 CCAAAAACGCCGCTATTGCTCAGTTTTTAGCGACGTTT
32445787 TATTGCAAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.33
Consensus pattern (41 bp):
CCAAAAACGCCGCTATTGCTCAGTTTTTAGCGACGTTTGGA
Found at i:32453818 original size:172 final size:173
Alignment explanation
Indices: 32453536--32453854 Score: 453
Period size: 172 Copynumber: 1.8 Consensus size: 173
32453526 CTTATTATTG
* * * * * *
32453536 AGTTAACTTATAATTGAAAAACTAAGTAACATTATTTGCCTTTTTGGAGTCTTATATTTTAAAAA
1 AGTTAACTTATAATCGAAAAACTAACTAACATTATTTACCTTATTAGAGTCTTAGATTTTAAAAA
* * * **
32453601 TGAGCGAATGAATCATTTAAATTCAATCTAAGATTCATATAATATATGTTTTTTTATCCTTACAA
66 TGAGCGAATGAATCATTTAAATTAAATCCAAGATTCATATAATATATATTTACTTATCCTTACAA
32453666 CTTT-ATTAAAATTTGTACTATCAATAATGAGGTTGTGGCATTC
131 -TTTCATTAAAATTTGTACTATCAATAATGAGGTTGTGGCATTC
*** * *
32453709 AGTTAACTTATAATCGAAATGTTAACTAACATTGTTTACCTTATTAGAGTCTTAGATTTT-AAAT
1 AGTTAACTTATAATCGAAAAACTAACTAACATTATTTACCTTATTAGAGTCTTAGATTTTAAAAA
*
32453773 TGAGTGAATGAATCATTTAAATTAAATCCAAGATTCATATAATATATATTTACTTATCCTTACAA
66 TGAGCGAATGAATCATTTAAATTAAATCCAAGATTCATATAATATATATTTACTTATCCTTACAA
*
32453838 TTTCATTTAAATTTGTA
131 TTTCATTAAAATTTGTA
32453855 TGATCCTTAA
Statistics
Matches: 127, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
171 3 0.02
172 74 0.58
173 50 0.39
ACGTcount: A:0.37, C:0.11, G:0.10, T:0.42
Consensus pattern (173 bp):
AGTTAACTTATAATCGAAAAACTAACTAACATTATTTACCTTATTAGAGTCTTAGATTTTAAAAA
TGAGCGAATGAATCATTTAAATTAAATCCAAGATTCATATAATATATATTTACTTATCCTTACAA
TTTCATTAAAATTTGTACTATCAATAATGAGGTTGTGGCATTC
Found at i:32453888 original size:172 final size:173
Alignment explanation
Indices: 32453498--32453904 Score: 452
Period size: 172 Copynumber: 2.4 Consensus size: 173
32453488 TTCAATATTC
* * * *
32453498 ATTAAAATTT-TACCAT-AATCAATGAGGTCT-TATTATTGAGTTAACTTATAATTGAAAAACTA
1 ATTAAAATTTGTACTATCAAT-AATGAGGT-TATATTATTCAGTTAACTTATAATTGAAATATTA
* * * * * *
32453560 AGTAACATTATTTGCCTTTTTGGAGTCTTATATTTTAAAAATGAGCGAATGAATCATTTAAATTC
64 ACTAACATTATTTACCTTATTAGAGTCTTAGATTTTAAAAATGAGCGAATGAATCATTTAAATTA
* * **
32453625 AATCTAAGATTCATATAATATATGTTTTTTTATCCTTACAACTTT
129 AATCCAAGATTCATATAATATATATTTACTTATCCTTACAACTTT
* *** * *
32453670 ATTAAAATTTGTACTATCAATAATGAGGTTGTGGCATTCAGTTAACTTATAATCGAAATGTTAAC
1 ATTAAAATTTGTACTATCAATAATGAGGTTATATTATTCAGTTAACTTATAATTGAAATATTAAC
* * *
32453735 TAACATTGTTTACCTTATTAGAGTCTTAGATTTT-AAATTGAGTGAATGAATCATTTAAATTAAA
66 TAACATTATTTACCTTATTAGAGTCTTAGATTTTAAAAATGAGCGAATGAATCATTTAAATTAAA
32453799 TCCAAGATTCATATAATATATATTTACTTATCCTTACAA-TTT
131 TCCAAGATTCATATAATATATATTTACTTATCCTTACAACTTT
* ** * **
32453841 CATTTAAATTTGTA-TGATCCTTAATTA-GTTCATATTATTTTGTTAAC-TATAATTGAAATATT
1 -ATTAAAATTTGTACT-ATCAATAATGAGGTT-ATATTATTCAGTTAACTTATAATTGAAATATT
32453903 AA
63 AA
32453905 TTAAATTTTG
Statistics
Matches: 195, Mismatches: 34, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
171 22 0.11
172 103 0.53
173 67 0.34
174 3 0.02
ACGTcount: A:0.37, C:0.11, G:0.10, T:0.43
Consensus pattern (173 bp):
ATTAAAATTTGTACTATCAATAATGAGGTTATATTATTCAGTTAACTTATAATTGAAATATTAAC
TAACATTATTTACCTTATTAGAGTCTTAGATTTTAAAAATGAGCGAATGAATCATTTAAATTAAA
TCCAAGATTCATATAATATATATTTACTTATCCTTACAACTTT
Found at i:32457256 original size:11 final size:11
Alignment explanation
Indices: 32457240--32457277 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
32457230 TTTACATTAT
32457240 AATTTTTTAAA
1 AATTTTTTAAA
32457251 AA-TTTTTAAA
1 AATTTTTTAAA
*
32457261 AATTTTTAAAA
1 AATTTTTTAAA
32457272 AATTTT
1 AATTTT
32457278 AATTAATCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
10 10 0.40
11 15 0.60
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (11 bp):
AATTTTTTAAA
Found at i:32457261 original size:9 final size:10
Alignment explanation
Indices: 32457243--32457279 Score: 65
Period size: 10 Copynumber: 3.7 Consensus size: 10
32457233 ACATTATAAT
32457243 TTTTTAAAAA
1 TTTTTAAAAA
32457253 TTTTTAAAAA
1 TTTTTAAAAA
32457263 TTTTTAAAAA
1 TTTTTAAAAA
*
32457273 ATTTTAA
1 TTTTTAA
32457280 TTAATCATTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (10 bp):
TTTTTAAAAA
Found at i:32465272 original size:21 final size:20
Alignment explanation
Indices: 32465233--32465272 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
32465223 CAAAATTTGT
*
32465233 ATAACTATCATTAAACATTC
1 ATAACTATCATCAAACATTC
*
32465253 ATAATCTATCATCAATCATT
1 ATAA-CTATCATCAAACATT
32465273 AAAATACATG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.42, C:0.20, G:0.00, T:0.38
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:32471238 original size:40 final size:40
Alignment explanation
Indices: 32471190--32471456 Score: 480
Period size: 40 Copynumber: 6.7 Consensus size: 40
32471180 GCAAACACAT
* *
32471190 TTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
32471230 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
32471270 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
32471310 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
32471350 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
32471390 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
32471430 TTGCCTTCGGGTCTTAGCCCGGATATA
1 TTGCCTTCGGGTCTTAGCCCGGATATA
32471457 ATCCAATGCT
Statistics
Matches: 221, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 221 1.00
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:32487051 original size:98 final size:99
Alignment explanation
Indices: 32486880--32487089 Score: 314
Period size: 98 Copynumber: 2.1 Consensus size: 99
32486870 CACTCATTTA
* *
32486880 GCCGAATACACAAGATCAAATATAACATCACATATGTACATACCTATATGGCCGAATATACAAGA
1 GCCGAATATACAACATCAAATATAACATCACATA-GTACATACCTATATGGCCGAATATACAAGA
* * *
32486945 TCAAATATAACATCACATATGTATATACCTATGTG
65 TCAAATATAACACCACATATATACATACCTATGTG
* * * *
32486980 GCCGAATATTCAACATCAAATATAACATCACATA-TATATACCTATGTGGCCGAATATACAAGGT
1 GCCGAATATACAACATCAAATATAACATCACATAGTACATACCTATATGGCCGAATATACAAGAT
*
32487044 CAAATATAACACCACATCTATACATACCTATGTG
66 CAAATATAACACCACATATATACATACCTATGTG
32487078 GCCGAATATACA
1 GCCGAATATACA
32487090 TGGTCATTTA
Statistics
Matches: 99, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
98 68 0.69
100 31 0.31
ACGTcount: A:0.42, C:0.21, G:0.11, T:0.26
Consensus pattern (99 bp):
GCCGAATATACAACATCAAATATAACATCACATAGTACATACCTATATGGCCGAATATACAAGAT
CAAATATAACACCACATATATACATACCTATGTG
Found at i:32487095 original size:50 final size:50
Alignment explanation
Indices: 32486880--32487089 Score: 316
Period size: 50 Copynumber: 4.2 Consensus size: 50
32486870 CACTCATTTA
* * *
32486880 GCCGAATACACAAGATCAAATATAACATCACATATGTACATACCTATATG
1 GCCGAATATACAAGATCAAATATAACATCACATATATACATACCTATGTG
* *
32486930 GCCGAATATACAAGATCAAATATAACATCACATATGTATATACCTATGTG
1 GCCGAATATACAAGATCAAATATAACATCACATATATACATACCTATGTG
* *
32486980 GCCGAATATTCAACATCAAATATAACATCACATATAT--ATACCTATGTG
1 GCCGAATATACAAGATCAAATATAACATCACATATATACATACCTATGTG
* * *
32487028 GCCGAATATACAAGGTCAAATATAACACCACATCTATACATACCTATGTG
1 GCCGAATATACAAGATCAAATATAACATCACATATATACATACCTATGTG
32487078 GCCGAATATACA
1 GCCGAATATACA
32487090 TGGTCATTTA
Statistics
Matches: 147, Mismatches: 11, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
48 43 0.29
50 104 0.71
ACGTcount: A:0.42, C:0.21, G:0.11, T:0.26
Consensus pattern (50 bp):
GCCGAATATACAAGATCAAATATAACATCACATATATACATACCTATGTG
Found at i:32491817 original size:40 final size:40
Alignment explanation
Indices: 32491768--32491854 Score: 113
Period size: 40 Copynumber: 2.2 Consensus size: 40
32491758 GTGTTGTACA
*
32491768 TAGCTGAAGCTAT-CTCAAATCGCACACTAAGCGCCACATT
1 TAGCCGAAGCTATAC-CAAATCGCACACTAAGCGCCACATT
* * * *
32491808 TAGCCGAAGCTATACCGAATCGCATACTAAGTGCCATATT
1 TAGCCGAAGCTATACCAAATCGCACACTAAGCGCCACATT
32491848 TAGCCGA
1 TAGCCGA
32491855 TATGTCATCA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
40 40 0.98
41 1 0.02
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (40 bp):
TAGCCGAAGCTATACCAAATCGCACACTAAGCGCCACATT
Found at i:32492276 original size:8 final size:8
Alignment explanation
Indices: 32492263--32492301 Score: 78
Period size: 8 Copynumber: 4.9 Consensus size: 8
32492253 TTTTAACCAT
32492263 ATAATTTC
1 ATAATTTC
32492271 ATAATTTC
1 ATAATTTC
32492279 ATAATTTC
1 ATAATTTC
32492287 ATAATTTC
1 ATAATTTC
32492295 ATAATTT
1 ATAATTT
32492302 AATCCCTAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 31 1.00
ACGTcount: A:0.38, C:0.10, G:0.00, T:0.51
Consensus pattern (8 bp):
ATAATTTC
Found at i:32493198 original size:12 final size:13
Alignment explanation
Indices: 32493181--32493218 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
32493171 ATCCTGGAAT
32493181 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
32493193 ATTAAGAACACATA
1 ATTAAGAACA-AGA
32493207 ATTAAGAACAAG
1 ATTAAGAACAAG
32493219 TCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:32495720 original size:6 final size:6
Alignment explanation
Indices: 32495703--32495736 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
32495693 TAAAGAAGAT
*
32495703 AAATAA AGATAA AAATAA AAATAAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAAT-AA AAATAA AAA
32495737 GTCTTTAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
6 19 0.76
7 6 0.24
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:32495720 original size:12 final size:13
Alignment explanation
Indices: 32495703--32495736 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
32495693 TAAAGAAGAT
*
32495703 AAATAAAGAT-AA
1 AAATAAAAATAAA
32495715 AAATAAAAATAAA
1 AAATAAAAATAAA
32495728 AAATAAAAA
1 AAATAAAAA
32495737 GTCTTTAAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (13 bp):
AAATAAAAATAAA
Found at i:32502351 original size:15 final size:16
Alignment explanation
Indices: 32502331--32502360 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
32502321 GAAAATTACC
32502331 AAAATGGG-CTAAATA
1 AAAATGGGACTAAATA
32502346 AAAATGGGACTAAAT
1 AAAATGGGACTAAAT
32502361 TGGAATATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.53, C:0.07, G:0.20, T:0.20
Consensus pattern (16 bp):
AAAATGGGACTAAATA
Found at i:32505869 original size:31 final size:31
Alignment explanation
Indices: 32505825--32505883 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
32505815 TGGTATCATG
32505825 TATAAATTCATCAACTT-TCACTTACTTTGCA
1 TATAAATTCATCAA-TTATCACTTACTTTGCA
*
32505856 TATAAACTT-ATCAATTATTACTTACTTT
1 TATAAA-TTCATCAATTATCACTTACTTT
32505884 CCAAACTTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
30 2 0.08
31 21 0.84
32 2 0.08
ACGTcount: A:0.34, C:0.19, G:0.02, T:0.46
Consensus pattern (31 bp):
TATAAATTCATCAATTATCACTTACTTTGCA
Found at i:32506791 original size:21 final size:20
Alignment explanation
Indices: 32506763--32506802 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
32506753 CAAAATTTGT
32506763 ATAACTATCATTAAACATTC
1 ATAACTATCATTAAACATTC
*
32506783 ATAATCTATCATTAATCATT
1 ATAA-CTATCATTAAACATT
32506803 AAAATACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.42, C:0.17, G:0.00, T:0.40
Consensus pattern (20 bp):
ATAACTATCATTAAACATTC
Found at i:32508437 original size:24 final size:24
Alignment explanation
Indices: 32508405--32508452 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
32508395 TCCACTAAGA
32508405 AAACCTACATAAAAATTCATTACC
1 AAACCTACATAAAAATTCATTACC
32508429 AAACCTACATAAAAATTCATTACC
1 AAACCTACATAAAAATTCATTACC
32508453 CTCACGTCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (24 bp):
AAACCTACATAAAAATTCATTACC
Found at i:32511325 original size:16 final size:16
Alignment explanation
Indices: 32511306--32511336 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32511296 GACAAAAGTC
32511306 GAAATGCCGAAAAGCT
1 GAAATGCCGAAAAGCT
*
32511322 GAAATGCCGGAAAGC
1 GAAATGCCGAAAAGC
32511337 CAAAATTTAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.19, G:0.29, T:0.10
Consensus pattern (16 bp):
GAAATGCCGAAAAGCT
Found at i:32511595 original size:29 final size:29
Alignment explanation
Indices: 32511556--32511639 Score: 123
Period size: 30 Copynumber: 2.9 Consensus size: 29
32511546 GCATGAATAT
* *
32511556 AATGTGATTTGGGTCTAATGGGCTACATA
1 AATGTGATTTGGGCCTAATGGGCCACATA
* *
32511585 AATGTGATTTGGGCCTAAAGAGGCCATATA
1 AATGTGATTTGGGCCTAATG-GGCCACATA
32511615 AATGTGATTTGGGCCTAATGGGCCA
1 AATGTGATTTGGGCCTAATGGGCCA
32511640 TGTGAATATA
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
29 23 0.47
30 26 0.53
ACGTcount: A:0.29, C:0.13, G:0.29, T:0.30
Consensus pattern (29 bp):
AATGTGATTTGGGCCTAATGGGCCACATA
Found at i:32511618 original size:30 final size:29
Alignment explanation
Indices: 32511552--32511671 Score: 127
Period size: 29 Copynumber: 4.2 Consensus size: 29
32511542 GTGAGCATGA
* *
32511552 ATAT-AATGTGATTTGGGTCTAATGGGCT
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* *
32511580 ACATAAATGTGATTTGGGCCTAAAGAGGCC
1 ATATAAATGTGATTTGGGCCTAATG-GGCC
32511610 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* * * * * *
32511639 ATGTGAATAT-AATTGGGTCTAGTGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
32511667 ATATA
1 ATATA
32511672 CAGGTATGTG
Statistics
Matches: 76, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
28 21 0.28
29 29 0.38
30 26 0.34
ACGTcount: A:0.29, C:0.12, G:0.28, T:0.32
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:32515426 original size:55 final size:54
Alignment explanation
Indices: 32515270--32515426 Score: 178
Period size: 55 Copynumber: 2.9 Consensus size: 54
32515260 CGAGTGCTAG
* * *
32515270 ACACAGGCGTGTCACATGCCCGTGTT-TATTTGGCAGGTTCGACCACAGGTGTTTC
1 ACACGGGCGTGTCGCACGCCCGTGTTGT-TTTGGCAGGTTCGACCAC-GGTGTTTC
* *
32515325 ACACGGGCGTGTCGAAC-CCCAGTGTTGTTTTGGCAGGTTCGCCCACGGT-TCTTCC
1 ACACGGGCGTGTCGCACGCCC-GTGTTGTTTTGGCAGGTTCGACCACGGTGT-TT-C
*
32515380 ACACGGGCGTGTCGCACGGCCGTGTTGTTTTGGCAGGCTT-GACCACG
1 ACACGGGCGTGTCGCACGCCCGTGTTGTTTTGGCAGG-TTCGACCACG
32515427 ACCATATCGT
Statistics
Matches: 88, Mismatches: 8, Indels: 12
0.81 0.07 0.11
Matches are distributed among these distances:
53 1 0.01
54 8 0.09
55 74 0.84
56 5 0.06
ACGTcount: A:0.15, C:0.28, G:0.31, T:0.27
Consensus pattern (54 bp):
ACACGGGCGTGTCGCACGCCCGTGTTGTTTTGGCAGGTTCGACCACGGTGTTTC
Found at i:32518892 original size:84 final size:84
Alignment explanation
Indices: 32518751--32518918 Score: 336
Period size: 84 Copynumber: 2.0 Consensus size: 84
32518741 TCCGTAGAGA
32518751 TCCCTAACTTATGTTATTATCCCTATTCAAGACTAATAACGTCTAATCCCTAAATTAAATAACTG
1 TCCCTAACTTATGTTATTATCCCTATTCAAGACTAATAACGTCTAATCCCTAAATTAAATAACTG
32518816 AGACTTTTCTCTAATTAAC
66 AGACTTTTCTCTAATTAAC
32518835 TCCCTAACTTATGTTATTATCCCTATTCAAGACTAATAACGTCTAATCCCTAAATTAAATAACTG
1 TCCCTAACTTATGTTATTATCCCTATTCAAGACTAATAACGTCTAATCCCTAAATTAAATAACTG
32518900 AGACTTTTCTCTAATTAAC
66 AGACTTTTCTCTAATTAAC
32518919 ACTCTAGGGT
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
84 84 1.00
ACGTcount: A:0.35, C:0.23, G:0.06, T:0.37
Consensus pattern (84 bp):
TCCCTAACTTATGTTATTATCCCTATTCAAGACTAATAACGTCTAATCCCTAAATTAAATAACTG
AGACTTTTCTCTAATTAAC
Done.