Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: A11 Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 114316535 ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31 Warning! 4920000 characters in sequence are not A, C, G, or T File 102 of 356 Found at i:32196415 original size:19 final size:19 Alignment explanation
Indices: 32196391--32196428 Score: 76 Period size: 19 Copynumber: 2.0 Consensus size: 19 32196381 GAAGAAAGTC 32196391 CCCTATTCAGAACGGTGGT 1 CCCTATTCAGAACGGTGGT 32196410 CCCTATTCAGAACGGTGGT 1 CCCTATTCAGAACGGTGGT 32196429 TTCAGGACTA Statistics Matches: 19, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 19 19 1.00 ACGTcount: A:0.21, C:0.26, G:0.26, T:0.26 Consensus pattern (19 bp): CCCTATTCAGAACGGTGGT Found at i:32200754 original size:14 final size:14 Alignment explanation
Indices: 32200735--32200766 Score: 55 Period size: 14 Copynumber: 2.3 Consensus size: 14 32200725 AAATCAATTA 32200735 AAACACGGTTTCCC 1 AAACACGGTTTCCC * 32200749 AAACACTGTTTCCC 1 AAACACGGTTTCCC 32200763 AAAC 1 AAAC 32200767 TAAGTAAAAG Statistics Matches: 17, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 14 17 1.00 ACGTcount: A:0.34, C:0.34, G:0.09, T:0.22 Consensus pattern (14 bp): AAACACGGTTTCCC Found at i:32208779 original size:19 final size:19 Alignment explanation
Indices: 32208755--32208798 Score: 61 Period size: 19 Copynumber: 2.3 Consensus size: 19 32208745 TACAAGCAAC * 32208755 ACAACATCAACCCAAATAA 1 ACAACATCAACCCAAAAAA * * 32208774 ACAACATTAATCCAAAAAA 1 ACAACATCAACCCAAAAAA 32208793 ACAACA 1 ACAACA 32208799 AAAAAAAAAT Statistics Matches: 22, Mismatches: 3, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 19 22 1.00 ACGTcount: A:0.61, C:0.27, G:0.00, T:0.11 Consensus pattern (19 bp): ACAACATCAACCCAAAAAA Found at i:32209256 original size:212 final size:212 Alignment explanation
Indices: 32208872--32209267 Score: 650 Period size: 212 Copynumber: 1.9 Consensus size: 212 32208862 GTCGAAGTAA * * 32208872 ACAACGACATTATAATAAAAAAAAACATAAGAAAAAGTCCAAAATACAATAGAAACTTACACCAC 1 ACAACAACATTATAATAAAAAAAAACATAAGAAAAAGTCCAAAATACAATAGAAACCTACACCAC * * 32208937 TCCAAACAAAAAAAAACACAACAAAAGTTTAATTAACCAACAACAATAACAAACCAAACCAAACT 66 TCCAAACAAAAAAAAACACAACAAAAGCTCAATTAACCAACAACAATAACAAACCAAACCAAACT * 32209002 AATAACAATAACACATAAGCTCAAAAACCATTATAGAATAGTTTAAGTTTCTTCATGAGTCCAAA 131 AATAACAATAACACATAAGCTCAAAAACCATTATAGAATAGTTTAACTTTCTTCATGAGTCCAAA 32209067 TAAACAACAAAAACAAT 196 TAAACAACAAAAACAAT * * * * 32209084 ACAACAACATTGTAATTAAAAAAAACATAAGCAAAAGTCCAAAATACAATAGAAACCTACACCAG 1 ACAACAACATTATAATAAAAAAAAACATAAGAAAAAGTCCAAAATACAATAGAAACCTACACCAC * * 32209149 TCCAAA-AAAAAAAGAACACAACAAAAGCTCAATTATCCAACAATAATAACAAACCAAACCAAAC 66 TCCAAACAAAAAAA-AACACAACAAAAGCTCAATTAACCAACAACAATAACAAACCAAACCAAAC * * * 32209213 TAATAACAATAACACATCAGTTCAAAACCCATTATAGAATAGTTTAACTTTCTTC 130 TAATAACAATAACACATAAGCTCAAAAACCATTATAGAATAGTTTAACTTTCTTC 32209268 TTGTGCTTCA Statistics Matches: 169, Mismatches: 14, Indels: 2 0.91 0.08 0.01 Matches are distributed among these distances: 211 7 0.04 212 162 0.96 ACGTcount: A:0.56, C:0.21, G:0.05, T:0.18 Consensus pattern (212 bp): ACAACAACATTATAATAAAAAAAAACATAAGAAAAAGTCCAAAATACAATAGAAACCTACACCAC TCCAAACAAAAAAAAACACAACAAAAGCTCAATTAACCAACAACAATAACAAACCAAACCAAACT AATAACAATAACACATAAGCTCAAAAACCATTATAGAATAGTTTAACTTTCTTCATGAGTCCAAA TAAACAACAAAAACAAT Found at i:32211692 original size:30 final size:30 Alignment explanation
Indices: 32211652--32211718 Score: 116 Period size: 30 Copynumber: 2.2 Consensus size: 30 32211642 GTTAAATTAA * * 32211652 AAATCAATTAATATAATAGTATAATAGCAT 1 AAATTAATTAATATAATAGTACAATAGCAT 32211682 AAATTAATTAATATAATAGTACAATAGCAT 1 AAATTAATTAATATAATAGTACAATAGCAT 32211712 AAATTAA 1 AAATTAA 32211719 AAATAGATAG Statistics Matches: 35, Mismatches: 2, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 30 35 1.00 ACGTcount: A:0.55, C:0.06, G:0.06, T:0.33 Consensus pattern (30 bp): AAATTAATTAATATAATAGTACAATAGCAT Found at i:32213888 original size:9 final size:9 Alignment explanation
Indices: 32213876--32213912 Score: 56 Period size: 9 Copynumber: 4.1 Consensus size: 9 32213866 ATATAGTTTA * 32213876 TATTCGATT 1 TATTCGAAT 32213885 TATTCGAAT 1 TATTCGAAT * 32213894 TATTCGAGT 1 TATTCGAAT 32213903 TATTCGAAT 1 TATTCGAAT 32213912 T 1 T 32213913 CGAGAATTCA Statistics Matches: 25, Mismatches: 3, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 9 25 1.00 ACGTcount: A:0.27, C:0.11, G:0.14, T:0.49 Consensus pattern (9 bp): TATTCGAAT Found at i:32213899 original size:18 final size:18 Alignment explanation
Indices: 32213876--32213912 Score: 65 Period size: 18 Copynumber: 2.1 Consensus size: 18 32213866 ATATAGTTTA * 32213876 TATTCGATTTATTCGAAT 1 TATTCGAGTTATTCGAAT 32213894 TATTCGAGTTATTCGAAT 1 TATTCGAGTTATTCGAAT 32213912 T 1 T 32213913 CGAGAATTCA Statistics Matches: 18, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 18 18 1.00 ACGTcount: A:0.27, C:0.11, G:0.14, T:0.49 Consensus pattern (18 bp): TATTCGAGTTATTCGAAT Found at i:32213978 original size:9 final size:9 Alignment explanation
Indices: 32213953--32213998 Score: 56 Period size: 9 Copynumber: 5.0 Consensus size: 9 32213943 TTGAAAAAAA 32213953 AATTCGAGTT 1 AATTCGA-TT * 32213963 GATTCGATT 1 AATTCGATT 32213972 AATTCGATT 1 AATTCGATT * 32213981 AACTCGATT 1 AATTCGATT * 32213990 AACTCGATT 1 AATTCGATT 32213999 CGAATAATTC Statistics Matches: 33, Mismatches: 3, Indels: 1 0.89 0.08 0.03 Matches are distributed among these distances: 9 27 0.82 10 6 0.18 ACGTcount: A:0.30, C:0.15, G:0.15, T:0.39 Consensus pattern (9 bp): AATTCGATT Found at i:32218411 original size:13 final size:13 Alignment explanation
Indices: 32218393--32218418 Score: 52 Period size: 13 Copynumber: 2.0 Consensus size: 13 32218383 GCTCGGCAGA 32218393 GACACGCCCGTGT 1 GACACGCCCGTGT 32218406 GACACGCCCGTGT 1 GACACGCCCGTGT 32218419 TCAATTGCTT Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 13 1.00 ACGTcount: A:0.15, C:0.38, G:0.31, T:0.15 Consensus pattern (13 bp): GACACGCCCGTGT Found at i:32225610 original size:27 final size:30 Alignment explanation
Indices: 32225563--32225632 Score: 85 Period size: 27 Copynumber: 2.5 Consensus size: 30 32225553 TATCTCTTCC * 32225563 TTAGATTGTCCT-AAGGCGACTTCC-A-CA 1 TTAGATAGTCCTAAAGGCGACTTCCTAGCA * 32225590 TTAGATAGTCCTAAATG-GACTTCCTAGCA 1 TTAGATAGTCCTAAAGGCGACTTCCTAGCA * 32225619 CTAGATAGTCCTAA 1 TTAGATAGTCCTAA 32225633 CGAACATCCT Statistics Matches: 37, Mismatches: 3, Indels: 4 0.84 0.07 0.09 Matches are distributed among these distances: 27 18 0.49 28 4 0.11 29 15 0.41 ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30 Consensus pattern (30 bp): TTAGATAGTCCTAAAGGCGACTTCCTAGCA Found at i:32226245 original size:38 final size:38 Alignment explanation
Indices: 32226171--32226275 Score: 122 Period size: 38 Copynumber: 2.8 Consensus size: 38 32226161 AAGCTTGTAG * * 32226171 ACCATTTTCATGGTG-CTGCTCCGTAGAGCTTATAGATA 1 ACCATTTTCACGGTGTC-GCTCCATAGAGCTTATAGATA * * * * 32226209 ACCCTTTTTAGGGTGTCGCTTCATAGAGCTTATAGATA 1 ACCATTTTCACGGTGTCGCTCCATAGAGCTTATAGATA * * 32226247 ATCATTTTCACGGTGTCGCTCCGTAGAGC 1 ACCATTTTCACGGTGTCGCTCCATAGAGC 32226276 CTGTAGACTA Statistics Matches: 55, Mismatches: 11, Indels: 2 0.81 0.16 0.03 Matches are distributed among these distances: 38 54 0.98 39 1 0.02 ACGTcount: A:0.22, C:0.22, G:0.22, T:0.34 Consensus pattern (38 bp): ACCATTTTCACGGTGTCGCTCCATAGAGCTTATAGATA Found at i:32228799 original size:18 final size:18 Alignment explanation
Indices: 32228778--32228812 Score: 52 Period size: 18 Copynumber: 1.9 Consensus size: 18 32228768 AATCAGTAAT * * 32228778 CAGTAACGGTAGCAGTAG 1 CAGTAACAGTAACAGTAG 32228796 CAGTAACAGTAACAGTA 1 CAGTAACAGTAACAGTA 32228813 TTCAACACAC Statistics Matches: 15, Mismatches: 2, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 18 15 1.00 ACGTcount: A:0.40, C:0.17, G:0.26, T:0.17 Consensus pattern (18 bp): CAGTAACAGTAACAGTAG Found at i:32228846 original size:45 final size:45 Alignment explanation
Indices: 32228796--32228902 Score: 146 Period size: 45 Copynumber: 2.4 Consensus size: 45 32228786 GTAGCAGTAG * * 32228796 CAGTAACAGTAACAGTATTCAACACACAAAGTG-CTGAATTTG-TAA 1 CAGTAACGGTAACAGTATTCAACACACAAAGTGTC-GAA-TCGATAA * * 32228841 CAGTAATGGTAACAGTATTCGACACACAAAGTGTCGAATCGATAA 1 CAGTAACGGTAACAGTATTCAACACACAAAGTGTCGAATCGATAA 32228886 CAGTAACGGTAACAGTA 1 CAGTAACGGTAACAGTA 32228903 ACAGTAGTCG Statistics Matches: 55, Mismatches: 5, Indels: 4 0.86 0.08 0.06 Matches are distributed among these distances: 44 2 0.04 45 52 0.95 46 1 0.02 ACGTcount: A:0.41, C:0.18, G:0.19, T:0.22 Consensus pattern (45 bp): CAGTAACGGTAACAGTATTCAACACACAAAGTGTCGAATCGATAA Found at i:32230522 original size:20 final size:20 Alignment explanation
Indices: 32230499--32230538 Score: 64 Period size: 20 Copynumber: 2.0 Consensus size: 20 32230489 AAAACCATAG 32230499 CAATTA-ATAATTATAATAAT 1 CAATTATATAA-TATAATAAT 32230519 CAATTATATAATATAATAAT 1 CAATTATATAATATAATAAT 32230539 ATATATAATC Statistics Matches: 19, Mismatches: 0, Indels: 2 0.90 0.00 0.10 Matches are distributed among these distances: 20 15 0.79 21 4 0.21 ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40 Consensus pattern (20 bp): CAATTATATAATATAATAAT Found at i:32230543 original size:17 final size:17 Alignment explanation
Indices: 32230514--32230547 Score: 52 Period size: 17 Copynumber: 2.0 Consensus size: 17 32230504 AATAATTATA 32230514 ATAATCAATTATATAAT 1 ATAATCAATTATATAAT 32230531 ATAAT-AATATATATAAT 1 ATAATCAAT-TATATAAT 32230548 CTAAATAAAA Statistics Matches: 16, Mismatches: 0, Indels: 2 0.89 0.00 0.11 Matches are distributed among these distances: 16 3 0.19 17 13 0.81 ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41 Consensus pattern (17 bp): ATAATCAATTATATAAT Found at i:32231372 original size:46 final size:46 Alignment explanation
Indices: 32231246--32231409 Score: 158 Period size: 46 Copynumber: 3.5 Consensus size: 46 32231236 GTGCCGGTGC * * 32231246 CATGTCCCAGACATGGTCTTACACTGAC--ACATCTCGTA-GCCGATG 1 CATGTCCCAGACAT-GTCTTACACTGACTTACGTCTC-AAGGCCGATG * * 32231291 CATGTCCCAGCCATGTCTTACACTGACTTACGTCTCAAGGCCGAAG 1 CATGTCCCAGACATGTCTTACACTGACTTACGTCTCAAGGCCGATG * * * ** 32231337 CATGTCCCAGATATGTCTTACACTAGCAC-T-GGTCTCAATGTTGATG 1 CATGTCCCAGACATGTCTTACACT-G-ACTTACGTCTCAAGGCCGATG 32231383 CCATGTCCCAGACATGGTCTTACACTG 1 -CATGTCCCAGACAT-GTCTTACACTG 32231410 GCTCTCATAA Statistics Matches: 100, Mismatches: 12, Indels: 12 0.81 0.10 0.10 Matches are distributed among these distances: 44 13 0.13 45 14 0.14 46 45 0.45 47 16 0.16 48 12 0.12 ACGTcount: A:0.24, C:0.30, G:0.20, T:0.27 Consensus pattern (46 bp): CATGTCCCAGACATGTCTTACACTGACTTACGTCTCAAGGCCGATG Found at i:32234933 original size:20 final size:19 Alignment explanation
Indices: 32234905--32234942 Score: 58 Period size: 20 Copynumber: 1.9 Consensus size: 19 32234895 TAAATTATTA * 32234905 TTCTTAGAAAATAGAATTTG 1 TTCTAAGAAAATA-AATTTG 32234925 TTCTAAGAAAATAAATTT 1 TTCTAAGAAAATAAATTT 32234943 CCACTACTTT Statistics Matches: 17, Mismatches: 1, Indels: 1 0.89 0.05 0.05 Matches are distributed among these distances: 19 5 0.29 20 12 0.71 ACGTcount: A:0.45, C:0.05, G:0.11, T:0.39 Consensus pattern (19 bp): TTCTAAGAAAATAAATTTG Found at i:32242533 original size:13 final size:15 Alignment explanation
Indices: 32242515--32242546 Score: 50 Period size: 13 Copynumber: 2.3 Consensus size: 15 32242505 TTTTGTTAGA 32242515 TAAATA-ATTTTT-G 1 TAAATAGATTTTTGG 32242528 TAAATAGATTTTTGG 1 TAAATAGATTTTTGG 32242543 TAAA 1 TAAA 32242547 ATTATCAATT Statistics Matches: 17, Mismatches: 0, Indels: 2 0.89 0.00 0.11 Matches are distributed among these distances: 13 6 0.35 14 6 0.35 15 5 0.29 ACGTcount: A:0.41, C:0.00, G:0.12, T:0.47 Consensus pattern (15 bp): TAAATAGATTTTTGG Found at i:32242941 original size:22 final size:21 Alignment explanation
Indices: 32242913--32242966 Score: 58 Period size: 19 Copynumber: 2.6 Consensus size: 21 32242903 GTTTGTGTAA 32242913 TTAAATTGTATATTTATATGTT 1 TTAAATTGTATA-TTATATGTT * 32242935 TTAAATTG-A-ATTATTTGTT 1 TTAAATTGTATATTATATGTT * 32242954 TGTGAATTGTATA 1 T-TAAATTGTATA 32242967 ATTGTCATGA Statistics Matches: 27, Mismatches: 2, Indels: 6 0.77 0.06 0.17 Matches are distributed among these distances: 19 9 0.33 20 7 0.26 21 2 0.07 22 9 0.33 ACGTcount: A:0.31, C:0.00, G:0.13, T:0.56 Consensus pattern (21 bp): TTAAATTGTATATTATATGTT Found at i:32243110 original size:24 final size:24 Alignment explanation
Indices: 32243074--32243119 Score: 56 Period size: 24 Copynumber: 1.9 Consensus size: 24 32243064 ACCGATACCT * * * 32243074 AGCTCGGAGGAGCTTACTGATTAC 1 AGCTCGGAAGAGCATACCGATTAC * 32243098 AGCTCGTAAGAGCATACCGATT 1 AGCTCGGAAGAGCATACCGATT 32243120 CAGAACTCAT Statistics Matches: 18, Mismatches: 4, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 24 18 1.00 ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24 Consensus pattern (24 bp): AGCTCGGAAGAGCATACCGATTAC Found at i:32243863 original size:21 final size:20 Alignment explanation
Indices: 32243813--32243864 Score: 50 Period size: 21 Copynumber: 2.5 Consensus size: 20 32243803 GCGTTATATT * * 32243813 GATAGAAGTCCAGGTTGTATT 1 GATAGAACT-CAGGTTGTATC * * 32243834 GGTATAACTCAGAGTTGTATC 1 GATAGAACTCAG-GTTGTATC 32243855 GATAGAACTC 1 GATAGAACTC 32243865 TTTGTTCTAC Statistics Matches: 24, Mismatches: 6, Indels: 2 0.75 0.19 0.06 Matches are distributed among these distances: 20 3 0.12 21 21 0.88 ACGTcount: A:0.31, C:0.13, G:0.25, T:0.31 Consensus pattern (20 bp): GATAGAACTCAGGTTGTATC Found at i:32259492 original size:19 final size:20 Alignment explanation
Indices: 32259452--32259498 Score: 62 Period size: 19 Copynumber: 2.4 Consensus size: 20 32259442 TTATAAATTT 32259452 TAAAAAGTCAAAATAATATA 1 TAAAAAGTCAAAATAATATA * 32259472 TAAAAA-TCGAAA-AATATTA 1 TAAAAAGTCAAAATAATA-TA 32259491 TAAAAAGT 1 TAAAAAGT 32259499 ACTTAAATTT Statistics Matches: 24, Mismatches: 1, Indels: 4 0.83 0.03 0.14 Matches are distributed among these distances: 18 4 0.17 19 13 0.54 20 7 0.29 ACGTcount: A:0.64, C:0.04, G:0.06, T:0.26 Consensus pattern (20 bp): TAAAAAGTCAAAATAATATA Found at i:32259619 original size:21 final size:21 Alignment explanation
Indices: 32259595--32259635 Score: 57 Period size: 21 Copynumber: 2.0 Consensus size: 21 32259585 TAAAACATAT * 32259595 TTTTA-AATCTTTTTTAATTTC 1 TTTTATAAT-TTTTATAATTTC 32259616 TTTTATAATTTTTATAATTT 1 TTTTATAATTTTTATAATTT 32259636 TTGTACATTT Statistics Matches: 18, Mismatches: 1, Indels: 2 0.86 0.05 0.10 Matches are distributed among these distances: 21 15 0.83 22 3 0.17 ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68 Consensus pattern (21 bp): TTTTATAATTTTTATAATTTC Found at i:32259771 original size:20 final size:20 Alignment explanation
Indices: 32259748--32259789 Score: 59 Period size: 21 Copynumber: 2.0 Consensus size: 20 32259738 TTTTTCTACA 32259748 TTATATA-TATTTCTGATTTT 1 TTATATATTATTT-TGATTTT 32259768 TTATATATTTATTTTGATTTT 1 TTATATA-TTATTTTGATTTT 32259789 T 1 T 32259790 AATGTGTATA Statistics Matches: 20, Mismatches: 0, Indels: 3 0.87 0.00 0.13 Matches are distributed among these distances: 20 7 0.35 21 8 0.40 22 5 0.25 ACGTcount: A:0.24, C:0.02, G:0.05, T:0.69 Consensus pattern (20 bp): TTATATATTATTTTGATTTT Found at i:32259790 original size:20 final size:22 Alignment explanation
Indices: 32259749--32259789 Score: 66 Period size: 22 Copynumber: 1.9 Consensus size: 22 32259739 TTTTCTACAT 32259749 TATATATATTTCTGATTTTTTA 1 TATATATATTTCTGATTTTTTA * 32259771 TATATTTATTT-TGATTTTT 1 TATATATATTTCTGATTTTT 32259790 AATGTGTATA Statistics Matches: 18, Mismatches: 1, Indels: 1 0.90 0.05 0.05 Matches are distributed among these distances: 21 8 0.44 22 10 0.56 ACGTcount: A:0.24, C:0.02, G:0.05, T:0.68 Consensus pattern (22 bp): TATATATATTTCTGATTTTTTA Found at i:32260243 original size:22 final size:22 Alignment explanation
Indices: 32260203--32260248 Score: 58 Period size: 22 Copynumber: 2.1 Consensus size: 22 32260193 TATCTACTTA * 32260203 TTTATAATTAAATAATATAAAT 1 TTTATAATTAAAAAATATAAAT * 32260225 TTTATAA-TAAAAAATTATATAT 1 TTTATAATTAAAAAA-TATAAAT 32260247 TT 1 TT 32260249 ATTAAATTAT Statistics Matches: 21, Mismatches: 2, Indels: 2 0.84 0.08 0.08 Matches are distributed among these distances: 21 6 0.29 22 15 0.71 ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48 Consensus pattern (22 bp): TTTATAATTAAAAAATATAAAT Found at i:32260249 original size:21 final size:21 Alignment explanation
Indices: 32260201--32260250 Score: 57 Period size: 21 Copynumber: 2.3 Consensus size: 21 32260191 TATATCTACT * 32260201 TATTTATAATTAAATAATATA 1 TATTTATAATTAAAAAATATA * 32260222 AATTTTATAA-TAAAAAATTATA 1 TA-TTTATAATTAAAAAA-TATA 32260244 TATTTAT 1 TATTTAT 32260251 TAAATTATTA Statistics Matches: 24, Mismatches: 3, Indels: 4 0.77 0.10 0.13 Matches are distributed among these distances: 21 12 0.50 22 12 0.50 ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48 Consensus pattern (21 bp): TATTTATAATTAAAAAATATA Found at i:32260282 original size:8 final size:8 Alignment explanation
Indices: 32260205--32260289 Score: 53 Period size: 8 Copynumber: 11.8 Consensus size: 8 32260195 TCTACTTATT 32260205 TATAATTA 1 TATAATTA * 32260213 AATAA-TA 1 TATAATTA * 32260220 TA-AATTT 1 TATAATTA 32260227 TATAA-TA 1 TATAATTA * * 32260234 AAAAATTA 1 TATAATTA * 32260242 TATATTTA 1 TATAATTA 32260250 T-TAA--A 1 TATAATTA 32260255 T-T-ATTA 1 TATAATTA 32260261 TATAATTA 1 TATAATTA * 32260269 -AAAATTA 1 TATAATTA 32260276 TATAATTA 1 TATAATTA 32260284 TATAAT 1 TATAAT 32260290 AAATGAAATA Statistics Matches: 57, Mismatches: 12, Indels: 16 0.67 0.14 0.19 Matches are distributed among these distances: 4 1 0.02 5 3 0.05 6 4 0.07 7 19 0.33 8 30 0.53 ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46 Consensus pattern (8 bp): TATAATTA Found at i:32260282 original size:15 final size:15 Alignment explanation
Indices: 32260208--32260283 Score: 64 Period size: 15 Copynumber: 4.9 Consensus size: 15 32260198 ACTTATTTAT * * 32260208 AATTAAATAA-TATA 1 AATTATATAATTAAA * * 32260222 AATTTTATAATAAAA 1 AATTATATAATTAAA 32260237 AATTATATATTTATTAAA 1 AATTATATA---ATTAAA * 32260255 TTATTATATAATTAAA 1 -AATTATATAATTAAA 32260271 AATTATATAATTA 1 AATTATATAATTA 32260284 TATAATAAAT Statistics Matches: 49, Mismatches: 8, Indels: 9 0.74 0.12 0.14 Matches are distributed among these distances: 14 8 0.16 15 22 0.45 16 6 0.12 18 5 0.10 19 8 0.16 ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45 Consensus pattern (15 bp): AATTATATAATTAAA Found at i:32267376 original size:6 final size:7 Alignment explanation
Indices: 32267358--32267382 Score: 50 Period size: 7 Copynumber: 3.6 Consensus size: 7 32267348 AACACTTGCA 32267358 ATTTTTC 1 ATTTTTC 32267365 ATTTTTC 1 ATTTTTC 32267372 ATTTTTC 1 ATTTTTC 32267379 ATTT 1 ATTT 32267383 CTTAAACTAA Statistics Matches: 18, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 18 1.00 ACGTcount: A:0.16, C:0.12, G:0.00, T:0.72 Consensus pattern (7 bp): ATTTTTC Found at i:32268382 original size:15 final size:14 Alignment explanation
Indices: 32268346--32268385 Score: 64 Period size: 14 Copynumber: 2.9 Consensus size: 14 32268336 TGTTTGACTT 32268346 AAAATAA-TTTTAA 1 AAAATAATTTTTAA 32268359 AAAATAATTTTTAA 1 AAAATAATTTTTAA 32268373 AAAATGAATTTTT 1 AAAAT-AATTTTT 32268386 TTTGGAGAAT Statistics Matches: 25, Mismatches: 0, Indels: 2 0.93 0.00 0.07 Matches are distributed among these distances: 13 7 0.28 14 11 0.44 15 7 0.28 ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42 Consensus pattern (14 bp): AAAATAATTTTTAA Found at i:32268717 original size:28 final size:28 Alignment explanation
Indices: 32268678--32268734 Score: 66 Period size: 28 Copynumber: 2.0 Consensus size: 28 32268668 AAATATTTTG 32268678 TAATAATCAATG-TT-ATATATAAACTTAA 1 TAATAATCAATGCTTAAT-TA-AAACTTAA 32268706 TAATATAT-AATGCTTAATTAAAACTTAA 1 TAATA-ATCAATGCTTAATTAAAACTTAA 32268734 T 1 T 32268735 TAAATTACAT Statistics Matches: 26, Mismatches: 0, Indels: 6 0.81 0.00 0.19 Matches are distributed among these distances: 28 18 0.69 29 6 0.23 30 2 0.08 ACGTcount: A:0.49, C:0.07, G:0.04, T:0.40 Consensus pattern (28 bp): TAATAATCAATGCTTAATTAAAACTTAA Found at i:32277929 original size:16 final size:16 Alignment explanation
Indices: 32277893--32277929 Score: 56 Period size: 16 Copynumber: 2.3 Consensus size: 16 32277883 TTGGTTCGCT * 32277893 GTAATGGAATAGATGC 1 GTAATGGAATAGAGGC * 32277909 ATAATGGAATAGAGGC 1 GTAATGGAATAGAGGC 32277925 GTAAT 1 GTAAT 32277930 AGATAATTCT Statistics Matches: 18, Mismatches: 3, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 16 18 1.00 ACGTcount: A:0.41, C:0.05, G:0.30, T:0.24 Consensus pattern (16 bp): GTAATGGAATAGAGGC Found at i:32277998 original size:44 final size:46 Alignment explanation
Indices: 32277910--32277999 Score: 148 Period size: 44 Copynumber: 2.0 Consensus size: 46 32277900 AATAGATGCA * 32277910 TAATGGAATAGAGGCGTAATAGATAATTCTTTTGTTTGGTTGAATG 1 TAATGGAATAGAGGCGTAATAGATAATTCTTGTGTTTGGTTGAATG * 32277956 TAATGGAATAGAGGCGTAAT-GGT-ATTCTTGTGTTTGGTTGAATG 1 TAATGGAATAGAGGCGTAATAGATAATTCTTGTGTTTGGTTGAATG 32278000 GAATAGAGGT Statistics Matches: 42, Mismatches: 2, Indels: 2 0.91 0.04 0.04 Matches are distributed among these distances: 44 20 0.48 45 2 0.05 46 20 0.48 ACGTcount: A:0.28, C:0.04, G:0.29, T:0.39 Consensus pattern (46 bp): TAATGGAATAGAGGCGTAATAGATAATTCTTGTGTTTGGTTGAATG Found at i:32278001 original size:39 final size:44 Alignment explanation
Indices: 32277910--32278015 Score: 132 Period size: 46 Copynumber: 2.5 Consensus size: 44 32277900 AATAGATGCA * 32277910 TAATGGAATAGAGGCGTAATAGATAATTCTTTTGTTTGGTTGAATG 1 TAATGGAATAGAGGCGTAATAGATAATTCTTGTGTTTGGTT--ATG * 32277956 TAATGGAATAGAGGCGTAAT-GGT-ATTCTTGTGTTTGG-T-TG 1 TAATGGAATAGAGGCGTAATAGATAATTCTTGTGTTTGGTTATG * 32277996 -AATGGAATAGAGGTGTAATA 1 TAATGGAATAGAGGCGTAATA 32278016 ACATAAGGAA Statistics Matches: 56, Mismatches: 3, Indels: 8 0.84 0.04 0.12 Matches are distributed among these distances: 39 18 0.32 40 2 0.04 43 1 0.02 44 13 0.23 45 2 0.04 46 20 0.36 ACGTcount: A:0.30, C:0.04, G:0.29, T:0.37 Consensus pattern (44 bp): TAATGGAATAGAGGCGTAATAGATAATTCTTGTGTTTGGTTATG Found at i:32278168 original size:16 final size:15 Alignment explanation
Indices: 32278158--32278313 Score: 61 Period size: 17 Copynumber: 10.5 Consensus size: 15 32278148 CATAATTGTT 32278158 ATAAAATATAATTTA 1 ATAAAATATAATTTA 32278173 ATAAAATATATAATTTA 1 AT-AAA-ATATAATTTA 32278190 ATAAAAT-T--TTTA 1 ATAAAATATAATTTA 32278202 AT-AAATAT--TCTT- 1 ATAAAATATAAT-TTA * * * 32278214 ATATGAAT-TTA-CTA 1 ATA-AAATATAATTTA 32278228 ATAAAATCATAATATATGA 1 ATAAAAT-ATAAT-T-T-A 32278247 TACTAAAATATAATTTA 1 -A-TAAAATATAATTTA 32278264 A-AATAAT-T-A-TT- 1 ATAA-AATATAATTTA * 32278275 ATTAAATATAATTTA 1 ATAAAATATAATTTA 32278290 ATAAAATATATAATTTA 1 AT-AAA-ATATAATTTA 32278307 ATAAAAT 1 ATAAAAT 32278314 TGTTAATAAA Statistics Matches: 109, Mismatches: 7, Indels: 50 0.66 0.04 0.30 Matches are distributed among these distances: 11 8 0.07 12 14 0.13 13 9 0.08 14 12 0.11 15 13 0.12 16 12 0.11 17 25 0.23 18 2 0.02 19 2 0.02 20 6 0.06 21 6 0.06 ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42 Consensus pattern (15 bp): ATAAAATATAATTTA Found at i:32278203 original size:17 final size:17 Alignment explanation
Indices: 32278163--32278196 Score: 68 Period size: 17 Copynumber: 2.0 Consensus size: 17 32278153 TTGTTATAAA 32278163 ATATAATTTAATAAAAT 1 ATATAATTTAATAAAAT 32278180 ATATAATTTAATAAAAT 1 ATATAATTTAATAAAAT 32278197 TTTTAATAAA Statistics Matches: 17, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 17 17 1.00 ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41 Consensus pattern (17 bp): ATATAATTTAATAAAAT Found at i:32278320 original size:17 final size:17 Alignment explanation
Indices: 32278280--32278313 Score: 68 Period size: 17 Copynumber: 2.0 Consensus size: 17 32278270 TTATTATTAA 32278280 ATATAATTTAATAAAAT 1 ATATAATTTAATAAAAT 32278297 ATATAATTTAATAAAAT 1 ATATAATTTAATAAAAT 32278314 TGTTAATAAA Statistics Matches: 17, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 17 17 1.00 ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41 Consensus pattern (17 bp): ATATAATTTAATAAAAT Found at i:32278324 original size:43 final size:43 Alignment explanation
Indices: 32278254--32278443 Score: 151 Period size: 43 Copynumber: 4.7 Consensus size: 43 32278244 TGATACTAAA * * 32278254 ATATAATTTAA-AATAATTATTATTAAATATAATTTAATAAAAT 1 ATATAATTTAATAA-AATTGTTAATAAATATAATTTAATAAAAT * 32278297 ATATAATTTAATAAAATTGTTAATAAATAT--TCTT-ATATGAAT 1 ATATAATTTAATAAAATTGTTAATAAATATAAT-TTAATA-AAAT * ** * 32278339 -T-T-A-CTAATAAAA-TCATAAT--ATATAA--TACT-AAA- 1 ATATAATTTAATAAAATTGTTAATAAATATAATTTAATAAAAT * * 32278371 ATATAATTTAACATAATTGTT-ATAAAATATAATTTAATAAAAT 1 ATATAATTTAATAAAATTGTTAAT-AAATATAATTTAATAAAAT 32278414 ATATAATTTAATAAAATTGTTAATAAATAT 1 ATATAATTTAATAAAATTGTTAATAAATAT 32278444 TCTTATATGA Statistics Matches: 112, Mismatches: 16, Indels: 38 0.67 0.10 0.23 Matches are distributed among these distances: 33 3 0.03 34 2 0.02 35 6 0.05 36 8 0.07 37 7 0.06 38 8 0.07 39 7 0.06 40 1 0.01 41 8 0.07 42 8 0.07 43 50 0.45 44 4 0.04 ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42 Consensus pattern (43 bp): ATATAATTTAATAAAATTGTTAATAAATATAATTTAATAAAAT Found at i:32278349 original size:117 final size:117 Alignment explanation
Indices: 32278143--32278546 Score: 702 Period size: 117 Copynumber: 3.5 Consensus size: 117 32278133 TTAATCATAT * * * 32278143 TTTAACATAATTGTTATAAAATATAATTTAATAAAATATATAATTTAATAAAATTTTTAATAAAT 1 TTTAAAATAATTATTATAAAATATAATTTAATAAAATATATAATTTAATAAAATTGTTAATAAAT * 32278208 ATTCTTATATGAATTTACTAATAAAATCATAATATATGATACTAAAATATAA 66 ATTCTTATATGAATTTACTAATAAAATCATAATATATAATACTAAAATATAA * 32278260 TTTAAAATAATTATTATTAAATATAATTTAATAAAATATATAATTTAATAAAATTGTTAATAAAT 1 TTTAAAATAATTATTATAAAATATAATTTAATAAAATATATAATTTAATAAAATTGTTAATAAAT 32278325 ATTCTTATATGAATTTACTAATAAAATCATAATATATAATACTAAAATATAA 66 ATTCTTATATGAATTTACTAATAAAATCATAATATATAATACTAAAATATAA * * 32278377 TTTAACATAATTGTTATAAAATATAATTTAATAAAATATATAATTTAATAAAATTGTTAATAAAT 1 TTTAAAATAATTATTATAAAATATAATTTAATAAAATATATAATTTAATAAAATTGTTAATAAAT 32278442 ATTCTTATATGAATTTACTAATAAAATCATAATATATAATACTAAAATATAA 66 ATTCTTATATGAATTTACTAATAAAATCATAATATATAATACTAAAATATAA * ** * 32278494 TTTAAAATAATTATTATTATCT-TAATTTAATAAAATATATAATTTACTAAAAT 1 TTTAAAATAATTATTATAAAATATAATTTAATAAAATATATAATTTAATAAAAT 32278547 CATAATATAT Statistics Matches: 273, Mismatches: 14, Indels: 1 0.95 0.05 0.00 Matches are distributed among these distances: 116 30 0.11 117 243 0.89 ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42 Consensus pattern (117 bp): TTTAAAATAATTATTATAAAATATAATTTAATAAAATATATAATTTAATAAAATTGTTAATAAAT ATTCTTATATGAATTTACTAATAAAATCATAATATATAATACTAAAATATAA Found at i:32278412 original size:15 final size:15 Alignment explanation
Indices: 32278392--32278430 Score: 60 Period size: 17 Copynumber: 2.5 Consensus size: 15 32278382 CATAATTGTT 32278392 ATAAAATATAATTTA 1 ATAAAATATAATTTA 32278407 ATAAAATATATAATTTA 1 AT-AAA-ATATAATTTA 32278424 ATAAAAT 1 ATAAAAT 32278431 TGTTAATAAA Statistics Matches: 22, Mismatches: 0, Indels: 4 0.85 0.00 0.15 Matches are distributed among these distances: 15 4 0.18 16 6 0.27 17 12 0.55 ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38 Consensus pattern (15 bp): ATAAAATATAATTTA Found at i:32278437 original size:17 final size:17 Alignment explanation
Indices: 32278397--32278430 Score: 68 Period size: 17 Copynumber: 2.0 Consensus size: 17 32278387 TTGTTATAAA 32278397 ATATAATTTAATAAAAT 1 ATATAATTTAATAAAAT 32278414 ATATAATTTAATAAAAT 1 ATATAATTTAATAAAAT 32278431 TGTTAATAAA Statistics Matches: 17, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 17 17 1.00 ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41 Consensus pattern (17 bp): ATATAATTTAATAAAAT Found at i:32278502 original size:20 final size:21 Alignment explanation
Indices: 32278463--32278502 Score: 55 Period size: 20 Copynumber: 2.0 Consensus size: 21 32278453 AATTTACTAA * 32278463 TAAAATCATAATATATAATAC 1 TAAAATCATAATATAAAATAC * 32278484 TAAAAT-ATAATTTAAAATA 1 TAAAATCATAATATAAAATA 32278503 ATTATTATTA Statistics Matches: 17, Mismatches: 2, Indels: 1 0.85 0.10 0.05 Matches are distributed among these distances: 20 11 0.65 21 6 0.35 ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35 Consensus pattern (21 bp): TAAAATCATAATATAAAATAC Found at i:32278529 original size:40 final size:39 Alignment explanation
Indices: 32278474--32278591 Score: 104 Period size: 38 Copynumber: 3.1 Consensus size: 39 32278464 AAAATCATAA 32278474 TATATAATAC--TAAAATATAATTTAAAATAATTATTAT 1 TATATAATACTATAAAATATAATTTAAAATAATTATTAT * * * * * 32278511 TATCTTAAT-TTAATAAAATATATAATTTACTAA-AATCA-TAA 1 TAT-ATAATACT-AT-AAA-ATATAATTTA-AAATAATTATTAT 32278552 TATATAATACTATAAAATATAATTT-AAATAATTATTAT 1 TATATAATACTATAAAATATAATTTAAAATAATTATTAT 32278590 TA 1 TA 32278592 AATATAATTT Statistics Matches: 61, Mismatches: 10, Indels: 19 0.68 0.11 0.21 Matches are distributed among these distances: 36 2 0.03 37 7 0.11 38 17 0.28 39 3 0.05 40 7 0.11 41 9 0.15 42 14 0.23 43 2 0.03 ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43 Consensus pattern (39 bp): TATATAATACTATAAAATATAATTTAAAATAATTATTAT Found at i:32278567 original size:23 final size:22 Alignment explanation
Indices: 32278522--32278611 Score: 67 Period size: 23 Copynumber: 3.9 Consensus size: 22 32278512 ATCTTAATTT * * 32278522 AATAAAATATATAATTTACTAA 1 AATATAATATATAATCTACTAA 32278544 AATCATAATATATAATACTA-TAA 1 AAT-ATAATATATAAT-CTACTAA * * 32278567 AATATAATTTAAATAAT-TATTATTA 1 AATATAA--TATATAATCTACTA--A * 32278592 AATATAATTTATAATCTACT 1 AATATAATATATAATCTACT 32278612 TTATTATTAT Statistics Matches: 54, Mismatches: 6, Indels: 14 0.73 0.08 0.19 Matches are distributed among these distances: 22 9 0.17 23 25 0.46 24 12 0.22 25 8 0.15 ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41 Consensus pattern (22 bp): AATATAATATATAATCTACTAA Found at i:32278598 original size:32 final size:32 Alignment explanation
Indices: 32278562--32278625 Score: 74 Period size: 32 Copynumber: 2.0 Consensus size: 32 32278552 TATATAATAC * 32278562 TATAAAATATAATTTAAATAATTATTATTAAA 1 TATAAAATATAATCTAAATAATTATTATTAAA ** ** * 32278594 TATAATTTATAATCTACTTTATTATTATTAAA 1 TATAAAATATAATCTAAATAATTATTATTAAA 32278626 CTGCAATACA Statistics Matches: 26, Mismatches: 6, Indels: 0 0.81 0.19 0.00 Matches are distributed among these distances: 32 26 1.00 ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48 Consensus pattern (32 bp): TATAAAATATAATCTAAATAATTATTATTAAA Found at i:32281048 original size:21 final size:20 Alignment explanation
Indices: 32281022--32281067 Score: 65 Period size: 20 Copynumber: 2.2 Consensus size: 20 32281012 TAAATTTTAA * 32281022 TATTTTAATTTCATTTTGATG 1 TATTTTAATGT-ATTTTGATG * 32281043 TATTTTGATGTATTTTGATG 1 TATTTTAATGTATTTTGATG 32281063 TATTT 1 TATTT 32281068 CAATCATTAT Statistics Matches: 23, Mismatches: 2, Indels: 1 0.88 0.08 0.04 Matches are distributed among these distances: 20 14 0.61 21 9 0.39 ACGTcount: A:0.22, C:0.02, G:0.13, T:0.63 Consensus pattern (20 bp): TATTTTAATGTATTTTGATG Found at i:32281049 original size:10 final size:10 Alignment explanation
Indices: 32281034--32281067 Score: 68 Period size: 10 Copynumber: 3.4 Consensus size: 10 32281024 TTTTAATTTC 32281034 ATTTTGATGT 1 ATTTTGATGT 32281044 ATTTTGATGT 1 ATTTTGATGT 32281054 ATTTTGATGT 1 ATTTTGATGT 32281064 ATTT 1 ATTT 32281068 CAATCATTAT Statistics Matches: 24, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 24 1.00 ACGTcount: A:0.21, C:0.00, G:0.18, T:0.62 Consensus pattern (10 bp): ATTTTGATGT Found at i:32281087 original size:29 final size:29 Alignment explanation
Indices: 32281053--32281111 Score: 118 Period size: 29 Copynumber: 2.0 Consensus size: 29 32281043 TATTTTGATG 32281053 TATTTTGATGTATTTCAATCATTATCGAT 1 TATTTTGATGTATTTCAATCATTATCGAT 32281082 TATTTTGATGTATTTCAATCATTATCGAT 1 TATTTTGATGTATTTCAATCATTATCGAT 32281111 T 1 T 32281112 TATATAGTCC Statistics Matches: 30, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 29 30 1.00 ACGTcount: A:0.27, C:0.10, G:0.10, T:0.53 Consensus pattern (29 bp): TATTTTGATGTATTTCAATCATTATCGAT Found at i:32289284 original size:6 final size:6 Alignment explanation
Indices: 32289273--32289320 Score: 69 Period size: 6 Copynumber: 7.5 Consensus size: 6 32289263 TATTCTAAAT 32289273 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA GTAAAAAA TAATAAA TAA 1 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA -T-AAAAA TAA-AAA TAA 32289321 CAAAGCTAAA Statistics Matches: 39, Mismatches: 0, Indels: 5 0.89 0.00 0.11 Matches are distributed among these distances: 6 26 0.67 7 8 0.21 8 5 0.13 ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19 Consensus pattern (6 bp): TAAAAA Found at i:32289284 original size:7 final size:7 Alignment explanation
Indices: 32289269--32289320 Score: 56 Period size: 7 Copynumber: 7.9 Consensus size: 7 32289259 AGCCTATTCT * 32289269 AAATTAA 1 AAATAAA 32289276 AAAT-AA 1 AAATAAA 32289282 AAAT-AA 1 AAATAAA 32289288 AAAT-AA 1 AAATAAA 32289294 AAATAAA 1 AAATAAA * 32289301 AAGTAAA 1 AAATAAA * 32289308 AAATAAT 1 AAATAAA 32289315 AAATAA 1 AAATAA 32289321 CAAAGCTAAA Statistics Matches: 41, Mismatches: 3, Indels: 2 0.89 0.07 0.04 Matches are distributed among these distances: 6 18 0.44 7 23 0.56 ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19 Consensus pattern (7 bp): AAATAAA Found at i:32301327 original size:14 final size:14 Alignment explanation
Indices: 32301308--32301335 Score: 56 Period size: 14 Copynumber: 2.0 Consensus size: 14 32301298 TTATAGTTTT 32301308 TATAATTTTTTATA 1 TATAATTTTTTATA 32301322 TATAATTTTTTATA 1 TATAATTTTTTATA 32301336 ATTTTTTGAG Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 14 14 1.00 ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64 Consensus pattern (14 bp): TATAATTTTTTATA Found at i:32308219 original size:17 final size:17 Alignment explanation
Indices: 32308197--32308235 Score: 51 Period size: 17 Copynumber: 2.3 Consensus size: 17 32308187 TTTTATTTTT * 32308197 AAAAATACATAAAACAC 1 AAAAATACAGAAAACAC * * 32308214 AAAAATAGAGAAAATAC 1 AAAAATACAGAAAACAC 32308231 AAAAA 1 AAAAA 32308236 AATTGTAAAA Statistics Matches: 19, Mismatches: 3, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 17 19 1.00 ACGTcount: A:0.74, C:0.10, G:0.05, T:0.10 Consensus pattern (17 bp): AAAAATACAGAAAACAC Found at i:32309471 original size:13 final size:12 Alignment explanation
Indices: 32309437--32309479 Score: 50 Period size: 13 Copynumber: 3.4 Consensus size: 12 32309427 CTATATAATT 32309437 AAATTTTTATATA 1 AAATTTTTATA-A * 32309450 ATATTTTTATAA 1 AAATTTTTATAA * 32309462 AAATTATTTAAAA 1 AAATT-TTTATAA 32309475 AAATT 1 AAATT 32309480 AAACCACCCA Statistics Matches: 26, Mismatches: 3, Indels: 2 0.84 0.10 0.06 Matches are distributed among these distances: 12 5 0.19 13 21 0.81 ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49 Consensus pattern (12 bp): AAATTTTTATAA Found at i:32310220 original size:57 final size:57 Alignment explanation
Indices: 32310151--32310264 Score: 228 Period size: 57 Copynumber: 2.0 Consensus size: 57 32310141 ACTCCAGTTA 32310151 AAATTTGGATGTTGTTTCCACCTTGGATTGTATGTGTTGGAGTAGGAATTGTTGTTG 1 AAATTTGGATGTTGTTTCCACCTTGGATTGTATGTGTTGGAGTAGGAATTGTTGTTG 32310208 AAATTTGGATGTTGTTTCCACCTTGGATTGTATGTGTTGGAGTAGGAATTGTTGTTG 1 AAATTTGGATGTTGTTTCCACCTTGGATTGTATGTGTTGGAGTAGGAATTGTTGTTG 32310265 CTACGATTAA Statistics Matches: 57, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 57 57 1.00 ACGTcount: A:0.19, C:0.07, G:0.30, T:0.44 Consensus pattern (57 bp): AAATTTGGATGTTGTTTCCACCTTGGATTGTATGTGTTGGAGTAGGAATTGTTGTTG Found at i:32313717 original size:17 final size:17 Alignment explanation
Indices: 32313697--32313731 Score: 61 Period size: 17 Copynumber: 2.1 Consensus size: 17 32313687 ATTTACAACG 32313697 GTGATGAGCTTGTGGCA 1 GTGATGAGCTTGTGGCA * 32313714 GTGATGGGCTTGTGGCA 1 GTGATGAGCTTGTGGCA 32313731 G 1 G 32313732 CGACAAGGCT Statistics Matches: 17, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 17 17 1.00 ACGTcount: A:0.14, C:0.11, G:0.46, T:0.29 Consensus pattern (17 bp): GTGATGAGCTTGTGGCA Found at i:32330597 original size:16 final size:16 Alignment explanation
Indices: 32330567--32330608 Score: 50 Period size: 16 Copynumber: 2.6 Consensus size: 16 32330557 TTATCTTTTA * 32330567 TTTTTGAAATCATAACT 1 TTTTTTAAATCATAA-T 32330584 TTTTTTAAAT-ATAAT 1 TTTTTTAAATCATAAT 32330599 TATTTTTAAA 1 T-TTTTTAAA 32330609 AACTATCTCA Statistics Matches: 23, Mismatches: 1, Indels: 3 0.85 0.04 0.11 Matches are distributed among these distances: 15 2 0.09 16 12 0.52 17 9 0.39 ACGTcount: A:0.38, C:0.05, G:0.02, T:0.55 Consensus pattern (16 bp): TTTTTTAAATCATAAT Found at i:32331489 original size:3 final size:3 Alignment explanation
Indices: 32331481--32331509 Score: 58 Period size: 3 Copynumber: 9.7 Consensus size: 3 32331471 AGGTGATCTT 32331481 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT 1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT 32331510 TATTTATGTG Statistics Matches: 26, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 26 1.00 ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69 Consensus pattern (3 bp): TTA Found at i:32342504 original size:20 final size:18 Alignment explanation
Indices: 32342466--32342504 Score: 51 Period size: 20 Copynumber: 2.1 Consensus size: 18 32342456 ATTCAAATAT * 32342466 ATCATATAACATTCTTAA 1 ATCATATAACATGCTTAA 32342484 ATCATATTAATCATGCTTAA 1 ATCATA-TAA-CATGCTTAA 32342504 A 1 A 32342505 CACACAAGGT Statistics Matches: 18, Mismatches: 1, Indels: 2 0.86 0.05 0.10 Matches are distributed among these distances: 18 6 0.33 19 3 0.17 20 9 0.50 ACGTcount: A:0.44, C:0.15, G:0.03, T:0.38 Consensus pattern (18 bp): ATCATATAACATGCTTAA Found at i:32343439 original size:12 final size:12 Alignment explanation
Indices: 32343422--32343451 Score: 51 Period size: 12 Copynumber: 2.5 Consensus size: 12 32343412 GCACATGGCT 32343422 GTGTCCCAGCCC 1 GTGTCCCAGCCC * 32343434 GTGTCCCAGCCT 1 GTGTCCCAGCCC 32343446 GTGTCC 1 GTGTCC 32343452 AACCCCATGT Statistics Matches: 17, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 12 17 1.00 ACGTcount: A:0.07, C:0.43, G:0.27, T:0.23 Consensus pattern (12 bp): GTGTCCCAGCCC Found at i:32346269 original size:31 final size:31 Alignment explanation
Indices: 32346231--32346292 Score: 124 Period size: 31 Copynumber: 2.0 Consensus size: 31 32346221 ATATAAATGA 32346231 GTACTCAAATCCTATGGCATGCCAACTATAT 1 GTACTCAAATCCTATGGCATGCCAACTATAT 32346262 GTACTCAAATCCTATGGCATGCCAACTATAT 1 GTACTCAAATCCTATGGCATGCCAACTATAT 32346293 CTAATGTTTT Statistics Matches: 31, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 31 31 1.00 ACGTcount: A:0.32, C:0.26, G:0.13, T:0.29 Consensus pattern (31 bp): GTACTCAAATCCTATGGCATGCCAACTATAT Found at i:32346948 original size:31 final size:32 Alignment explanation
Indices: 32346877--32346951 Score: 82 Period size: 33 Copynumber: 2.3 Consensus size: 32 32346867 GATTTGGTAT * * * * 32346877 AATTATATATATGAAACTTTGACTTTGGTTCA 1 AATTATATACATAAAACTTTGAATTTGATTCA 32346909 AATATATATACATAAAACTTT-AATATTGATTC- 1 AAT-TATATACATAAAACTTTGAAT-TTGATTCA 32346941 AATTATATACA 1 AATTATATACA 32346952 CATTTTAAAA Statistics Matches: 37, Mismatches: 4, Indels: 5 0.80 0.09 0.11 Matches are distributed among these distances: 31 8 0.22 32 8 0.22 33 21 0.57 ACGTcount: A:0.43, C:0.09, G:0.07, T:0.41 Consensus pattern (32 bp): AATTATATACATAAAACTTTGAATTTGATTCA Found at i:32347286 original size:2 final size:2 Alignment explanation
Indices: 32347279--32347304 Score: 52 Period size: 2 Copynumber: 13.0 Consensus size: 2 32347269 GAGATTTCTT 32347279 TA TA TA TA TA TA TA TA TA TA TA TA TA 1 TA TA TA TA TA TA TA TA TA TA TA TA TA 32347305 AACTAACTAG Statistics Matches: 24, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 24 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): TA Found at i:32348321 original size:21 final size:21 Alignment explanation
Indices: 32348297--32348340 Score: 61 Period size: 21 Copynumber: 2.1 Consensus size: 21 32348287 AGTTTCCCTC * * * 32348297 TCTTGTAATTATGTAGTCATT 1 TCTTGTAATAATCTACTCATT 32348318 TCTTGTAATAATCTACTCATT 1 TCTTGTAATAATCTACTCATT 32348339 TC 1 TC 32348341 AAATCTTCCT Statistics Matches: 20, Mismatches: 3, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 21 20 1.00 ACGTcount: A:0.25, C:0.16, G:0.09, T:0.50 Consensus pattern (21 bp): TCTTGTAATAATCTACTCATT Found at i:32349211 original size:31 final size:31 Alignment explanation
Indices: 32349173--32349236 Score: 110 Period size: 31 Copynumber: 2.1 Consensus size: 31 32349163 GATTCATATA 32349173 ATATATGTTTTGTAACACCCCTACCCGACCC 1 ATATATGTTTTGTAACACCCCTACCCGACCC * * 32349204 ATATATGTTTTGTAACACCCCTGCCTGACCC 1 ATATATGTTTTGTAACACCCCTACCCGACCC 32349235 AT 1 AT 32349237 TCGCTAGATC Statistics Matches: 31, Mismatches: 2, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 31 31 1.00 ACGTcount: A:0.25, C:0.33, G:0.11, T:0.31 Consensus pattern (31 bp): ATATATGTTTTGTAACACCCCTACCCGACCC Found at i:32351096 original size:5 final size:5 Alignment explanation
Indices: 32351082--32351110 Score: 51 Period size: 5 Copynumber: 6.0 Consensus size: 5 32351072 TTTGACTAAG 32351082 TAAAA T-AAA TAAAA TAAAA TAAAA TAAAA 1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA 32351111 GTTCCAATGC Statistics Matches: 23, Mismatches: 0, Indels: 2 0.92 0.00 0.08 Matches are distributed among these distances: 4 4 0.17 5 19 0.83 ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21 Consensus pattern (5 bp): TAAAA Found at i:32353390 original size:5 final size:5 Alignment explanation
Indices: 32353380--32353411 Score: 57 Period size: 5 Copynumber: 6.6 Consensus size: 5 32353370 AAAGTGTGAA 32353380 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA 1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA 32353412 GAACACACAA Statistics Matches: 26, Mismatches: 0, Indels: 2 0.93 0.00 0.07 Matches are distributed among these distances: 4 4 0.15 5 22 0.85 ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19 Consensus pattern (5 bp): AAAAT Found at i:32353405 original size:9 final size:9 Alignment explanation
Indices: 32353381--32353411 Score: 53 Period size: 9 Copynumber: 3.3 Consensus size: 9 32353371 AAGTGTGAAA 32353381 AAATAAAAT 1 AAATAAAAT 32353390 AAAATAAAAT 1 -AAATAAAAT 32353400 AAATAAAAT 1 AAATAAAAT 32353409 AAA 1 AAA 32353412 GAACACACAA Statistics Matches: 21, Mismatches: 0, Indels: 1 0.95 0.00 0.05 Matches are distributed among these distances: 9 12 0.57 10 9 0.43 ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19 Consensus pattern (9 bp): AAATAAAAT Found at i:32357746 original size:5 final size:5 Alignment explanation
Indices: 32357736--32357767 Score: 57 Period size: 5 Copynumber: 6.6 Consensus size: 5 32357726 AATTTGTGAA 32357736 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA 1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA 32357768 GAACACATAA Statistics Matches: 26, Mismatches: 0, Indels: 2 0.93 0.00 0.07 Matches are distributed among these distances: 4 4 0.15 5 22 0.85 ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19 Consensus pattern (5 bp): AAAAT Found at i:32357761 original size:9 final size:9 Alignment explanation
Indices: 32357737--32357767 Score: 53 Period size: 9 Copynumber: 3.3 Consensus size: 9 32357727 ATTTGTGAAA 32357737 AAATAAAAT 1 AAATAAAAT 32357746 AAAATAAAAT 1 -AAATAAAAT 32357756 AAATAAAAT 1 AAATAAAAT 32357765 AAA 1 AAA 32357768 GAACACATAA Statistics Matches: 21, Mismatches: 0, Indels: 1 0.95 0.00 0.05 Matches are distributed among these distances: 9 12 0.57 10 9 0.43 ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19 Consensus pattern (9 bp): AAATAAAAT Found at i:32359668 original size:16 final size:15 Alignment explanation
Indices: 32359638--32359676 Score: 51 Period size: 16 Copynumber: 2.5 Consensus size: 15 32359628 TATGCAAAGT * * 32359638 TAATAATAATTAATA 1 TAATTATAATAAATA 32359653 TATATTATAATAAATA 1 TA-ATTATAATAAATA 32359669 TAATTATA 1 TAATTATA 32359677 TACTAGTTAT Statistics Matches: 21, Mismatches: 2, Indels: 2 0.84 0.08 0.08 Matches are distributed among these distances: 15 8 0.38 16 13 0.62 ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44 Consensus pattern (15 bp): TAATTATAATAAATA Found at i:32361573 original size:40 final size:40 Alignment explanation
Indices: 32361527--32361751 Score: 263 Period size: 40 Copynumber: 5.6 Consensus size: 40 32361517 CTTGCGCAAG * * * 32361527 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT 1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT * * 32361567 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT 1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT * * * * 32361607 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCAGAAAT 1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT * * * 32361647 GCCTTCGGGTCTTAGCCCGGATATA-ACAACTCGCACGAAT 1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT * * * * * 32361687 GCCTTCAGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA 1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT * 32361728 GCCTTCGGGACTTAGCCCGGATAT 1 GCCTTCGGGTCTTAGCCCGGATAT 32361752 CATTCGAATA Statistics Matches: 154, Mismatches: 28, Indels: 5 0.82 0.15 0.03 Matches are distributed among these distances: 39 1 0.01 40 125 0.81 41 28 0.18 ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25 Consensus pattern (40 bp): GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT Found at i:32361622 original size:80 final size:80 Alignment explanation
Indices: 32361491--32361751 Score: 285 Period size: 80 Copynumber: 3.3 Consensus size: 80 32361481 CTCAAGTAAT * * * * * * * 32361491 CTTCGGGATTTAG-CCGGATATAACTACTTGCGC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT 1 CTTCGGGACTTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT * 32361554 CACTAGCATAAATGC 66 CACTAGCACAAATGC * * * * 32361569 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAA 1 CTTCGGGACTTAGCCCGGATATA-ACAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG * * 32361633 TCGCTAGCAGAAATGC 65 TCACTAGCACAAATGC * * * * * * * 32361649 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGCCTTCAGATCTTAGTCCGGTTATAGT 1 CTTCGGGACTTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT * 32361714 CACCTAGCACAAAAGC 66 CA-CTAGCACAAATGC 32361730 CTTCGGGACTTAGCCCGGATAT 1 CTTCGGGACTTAGCCCGGATAT 32361752 CATTCGAATA Statistics Matches: 151, Mismatches: 27, Indels: 7 0.82 0.15 0.04 Matches are distributed among these distances: 78 12 0.08 79 15 0.10 80 92 0.61 81 32 0.21 ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26 Consensus pattern (80 bp): CTTCGGGACTTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT CACTAGCACAAATGC Found at i:32361712 original size:120 final size:121 Alignment explanation
Indices: 32361527--32361751 Score: 294 Period size: 120 Copynumber: 1.9 Consensus size: 121 32361517 CTTGCGCAAG * ** * * 32361527 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATA 1 GCCTTCGGGTCTTAGCCCGGATATGAACACTAGCACAAATGCCTTCGAGACTTAGCCCGGATATA * * ** 32361592 GTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCAGAAAT 66 GTCACCTAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAATCGCTAGCAGAAAT * * * * 32361647 GCCTTCGGGTCTTAGCCCGGATAT-AACAACTCGCACGAATGCCTTC-AGATCTTAGTCCGGTTA 1 GCCTTCGGGTCTTAGCCCGGATATGAAC-ACTAGCACAAATGCCTTCGAGA-CTTAGCCCGGATA 32361710 TAGTCACCTAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT 64 TAGTCACCTAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT 32361752 CATTCGAATA Statistics Matches: 89, Mismatches: 13, Indels: 5 0.83 0.12 0.05 Matches are distributed among these distances: 119 3 0.03 120 54 0.61 121 32 0.36 ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25 Consensus pattern (121 bp): GCCTTCGGGTCTTAGCCCGGATATGAACACTAGCACAAATGCCTTCGAGACTTAGCCCGGATATA GTCACCTAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAATCGCTAGCAGAAAT Found at i:32366114 original size:28 final size:28 Alignment explanation
Indices: 32366079--32366136 Score: 107 Period size: 28 Copynumber: 2.1 Consensus size: 28 32366069 ATGGGGTAAA 32366079 TTATACCCGCATCTAACAACTTGATAAT 1 TTATACCCGCATCTAACAACTTGATAAT * 32366107 TTATACCCGCATCTAACAACTTGATGAT 1 TTATACCCGCATCTAACAACTTGATAAT 32366135 TT 1 TT 32366137 CTTTCTTTAC Statistics Matches: 29, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 28 29 1.00 ACGTcount: A:0.33, C:0.24, G:0.09, T:0.34 Consensus pattern (28 bp): TTATACCCGCATCTAACAACTTGATAAT Found at i:32382804 original size:46 final size:46 Alignment explanation
Indices: 32382754--32382926 Score: 210 Period size: 46 Copynumber: 3.7 Consensus size: 46 32382744 TGGTTGAGCA 32382754 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG * * * * 32382800 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G * 32382845 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG 1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG * * 32382893 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA 32382927 GGGGCGGGTT Statistics Matches: 107, Mismatches: 11, Indels: 18 0.79 0.08 0.13 Matches are distributed among these distances: 42 2 0.02 43 4 0.04 45 3 0.03 46 61 0.57 47 29 0.27 48 3 0.03 50 3 0.03 51 2 0.02 ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29 Consensus pattern (46 bp): TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG Found at i:32382910 original size:93 final size:93 Alignment explanation
Indices: 32382751--32382921 Score: 315 Period size: 93 Copynumber: 1.8 Consensus size: 93 32382741 GGATGGTTGA * * 32382751 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT 1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT 32382816 TGAGTCCGAGTTCGTGAAATGTAACTAG 66 TGAGTCCGAGTTCGTGAAATGTAACTAG * 32382844 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT 1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT 32382909 TGAGTCCGAGTTC 66 TGAGTCCGAGTTC 32382922 ACTTAGGGGC Statistics Matches: 75, Mismatches: 3, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 93 75 1.00 ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28 Consensus pattern (93 bp): GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT TGAGTCCGAGTTCGTGAAATGTAACTAG Found at i:32384912 original size:57 final size:57 Alignment explanation
Indices: 32384777--32384925 Score: 160 Period size: 57 Copynumber: 2.6 Consensus size: 57 32384767 CAATCTTGTA * * * 32384777 ATATAAAGGATTTAGCCTGGACGGGTAATCCCGATATCACACCCCTCGAGCATACATT 1 ATATAAAGGATTTAGCCTGGACTGGTAAT-CCTATATCACACCCCTCAAGCATACATT * * * * * * 32384835 ATGAT-TAGGGTTTAGTCTGGACTGGTAATCCTA-ATCGA-GCTCCTCTAAGCATACGTT 1 AT-ATAAAGGATTTAGCCTGGACTGGTAATCCTATATC-ACACCCCTC-AAGCATACATT 32384892 ATATAAAGGATTTAGCCTGGACTGGTAATCCTAT 1 ATATAAAGGATTTAGCCTGGACTGGTAATCCTAT 32384926 TAAATGATAT Statistics Matches: 74, Mismatches: 12, Indels: 10 0.77 0.12 0.10 Matches are distributed among these distances: 56 10 0.14 57 40 0.54 58 22 0.30 59 2 0.03 ACGTcount: A:0.29, C:0.21, G:0.21, T:0.30 Consensus pattern (57 bp): ATATAAAGGATTTAGCCTGGACTGGTAATCCTATATCACACCCCTCAAGCATACATT Found at i:32386971 original size:39 final size:39 Alignment explanation
Indices: 32386926--32387065 Score: 208 Period size: 39 Copynumber: 3.6 Consensus size: 39 32386916 GCTCTGATAA * * * 32386926 GCTTCAGTTTGGCTTTGGGCTTCCGTTTAGCACTTGTGT 1 GCTTCAGTTAGCCTTTGGGCTTCCGTTTAGCACTTATGT * 32386965 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT 1 GCTTCAGTTAGCCTTTGGGCTTCCGTTTAGCACTTATGT * 32387004 GCTTCAGTTAGCCTTTGGGATTCCGTTTAGCACTTATGT 1 GCTTCAGTTAGCCTTTGGGCTTCCGTTTAGCACTTATGT * * * 32387043 GCTTCAGCTAGACTTCGGGCTTC 1 GCTTCAGTTAGCCTTTGGGCTTC 32387066 AGATCACGAT Statistics Matches: 91, Mismatches: 10, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 39 91 1.00 ACGTcount: A:0.12, C:0.24, G:0.25, T:0.39 Consensus pattern (39 bp): GCTTCAGTTAGCCTTTGGGCTTCCGTTTAGCACTTATGT Found at i:32392383 original size:130 final size:130 Alignment explanation
Indices: 32392113--32392385 Score: 300 Period size: 130 Copynumber: 2.1 Consensus size: 130 32392103 TTCATCGTCT * * *** 32392113 GTGATGCTATAGTACCTTTCAACCATGGTCTTACACATTTTTTCTATCAACTCATCTTTTGATGC 1 GTGATGCCATAGTACCTTTCAACCATGGTCTTACACATTTTTTCCATCAACTCATAACTTGATGC * ** ** * * * * 32392178 CATATCATCTTTCAGTTATGGTCTTACTCAATAAAACTTGTGTTTATCGTCCCGCTAGGCTATCT 66 CATAGCATCTTTCAACTATGGTCTTACTCAATAAAACCCGTGTTTATAGTCCAGCTAGGCTACCA * * 32392243 GTGATGCCATAGTACCTTTCAACCATGGTCTTACACATTTTTTCCGTCAACTCATAACTTGATGT 1 GTGATGCCATAGTACCTTTCAACCATGGTCTTACACATTTTTTCCATCAACTCATAACTTGATGC * * * * * 32392308 CATAGCTTCTTTTAACTATGGTCTTACTCATTATAACCCCGTGTTTACTATTCCAG-T-GGACTA 66 CATAGCATCTTTCAACTATGGTCTTACTCAATA-AAACCCGTGTTTA-TAGTCCAGCTAGG-CTA 32392371 CCA 128 CCA * 32392374 G-GATTCCATAGT 1 GTGATGCCATAGT 32392386 CCCACTATGG Statistics Matches: 118, Mismatches: 22, Indels: 6 0.81 0.15 0.04 Matches are distributed among these distances: 130 97 0.82 131 16 0.14 132 5 0.04 ACGTcount: A:0.24, C:0.24, G:0.14, T:0.39 Consensus pattern (130 bp): GTGATGCCATAGTACCTTTCAACCATGGTCTTACACATTTTTTCCATCAACTCATAACTTGATGC CATAGCATCTTTCAACTATGGTCTTACTCAATAAAACCCGTGTTTATAGTCCAGCTAGGCTACCA Found at i:32400537 original size:25 final size:26 Alignment explanation
Indices: 32400483--32400537 Score: 64 Period size: 25 Copynumber: 2.2 Consensus size: 26 32400473 TTGCATATTT 32400483 TATAATAAGTTAAATATGTAAATTAA 1 TATAATAAGTTAAATATGTAAATTAA 32400509 -ATAATATA-TTAATATATGT-AA-TAA 1 TATAATA-AGTTAA-ATATGTAAATTAA 32400533 TATAA 1 TATAA 32400538 CATAAAATAA Statistics Matches: 26, Mismatches: 0, Indels: 7 0.79 0.00 0.21 Matches are distributed among these distances: 24 3 0.12 25 16 0.62 26 7 0.27 ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40 Consensus pattern (26 bp): TATAATAAGTTAAATATGTAAATTAA Found at i:32405290 original size:35 final size:35 Alignment explanation
Indices: 32405239--32405307 Score: 129 Period size: 35 Copynumber: 2.0 Consensus size: 35 32405229 AATAATCTCT 32405239 TCGTCACCTACCCTAAGTACCAATTTACCATCACC 1 TCGTCACCTACCCTAAGTACCAATTTACCATCACC * 32405274 TCGTCACCTACTCTAAGTACCAATTTACCATCAC 1 TCGTCACCTACCCTAAGTACCAATTTACCATCAC 32405308 TCACATCAGT Statistics Matches: 33, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 35 33 1.00 ACGTcount: A:0.29, C:0.38, G:0.06, T:0.28 Consensus pattern (35 bp): TCGTCACCTACCCTAAGTACCAATTTACCATCACC Found at i:32414386 original size:23 final size:22 Alignment explanation
Indices: 32414333--32414440 Score: 119 Period size: 22 Copynumber: 4.9 Consensus size: 22 32414323 GAGTCATGGT * 32414333 CGGTAAGCTCCT-TCGAGCTGAA 1 CGGTAAGCT-CTATTGAGCTGAA * * * 32414355 CAGTAAGCTCTATTAAGTTGAAA 1 CGGTAAGCTCTATTGAGCTG-AA * 32414378 CGGCAAGCTCTATTGAGCTGAA 1 CGGTAAGCTCTATTGAGCTGAA * 32414400 CGGTAACCTCTATTGAGCTGAA 1 CGGTAAGCTCTATTGAGCTGAA * * 32414422 CGGTAAGCTCCAATGAGCT 1 CGGTAAGCTCTATTGAGCT 32414441 AAAATAGTAA Statistics Matches: 71, Mismatches: 13, Indels: 4 0.81 0.15 0.05 Matches are distributed among these distances: 21 2 0.03 22 51 0.72 23 18 0.25 ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25 Consensus pattern (22 bp): CGGTAAGCTCTATTGAGCTGAA Found at i:32414411 original size:45 final size:44 Alignment explanation
Indices: 32414347--32414440 Score: 116 Period size: 45 Copynumber: 2.1 Consensus size: 44 32414337 AAGCTCCTTC * * * * 32414347 GAGCTGAACAGTAAGCTCTATTAAGTTGAAACGGCAAGCTCTATT 1 GAGCTGAACAGTAACCTCTATTAAGCTG-AACGGCAAGCTCCAAT * * * 32414392 GAGCTGAACGGTAACCTCTATTGAGCTGAACGGTAAGCTCCAAT 1 GAGCTGAACAGTAACCTCTATTAAGCTGAACGGCAAGCTCCAAT 32414436 GAGCT 1 GAGCT 32414441 AAAATAGTAA Statistics Matches: 42, Mismatches: 7, Indels: 1 0.84 0.14 0.02 Matches are distributed among these distances: 44 18 0.43 45 24 0.57 ACGTcount: A:0.31, C:0.20, G:0.24, T:0.24 Consensus pattern (44 bp): GAGCTGAACAGTAACCTCTATTAAGCTGAACGGCAAGCTCCAAT Found at i:32417201 original size:50 final size:50 Alignment explanation
Indices: 32417130--32417273 Score: 198 Period size: 50 Copynumber: 2.9 Consensus size: 50 32417120 CACATAGTGA * * * * * 32417130 GATGCCAATGGCATATCCCAGATATGGTCTTACATGGGTTCACACATATC 1 GATGCCAATGCCATGTACCAGACATGGTCTTACATGGGATCACACATATC * * 32417180 GATGCCAATGCCCTGTACCAGACATGGTCTTACATGGGATCACGCATATC 1 GATGCCAATGCCATGTACCAGACATGGTCTTACATGGGATCACACATATC * * * 32417230 GATGCCAATGCCATGTCCCCGACATGGTTTTACATGGGATCACA 1 GATGCCAATGCCATGTACCAGACATGGTCTTACATGGGATCACA 32417274 TATCGAAACT Statistics Matches: 82, Mismatches: 12, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 50 82 1.00 ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26 Consensus pattern (50 bp): GATGCCAATGCCATGTACCAGACATGGTCTTACATGGGATCACACATATC Found at i:32420593 original size:47 final size:46 Alignment explanation
Indices: 32420505--32420807 Score: 217 Period size: 47 Copynumber: 6.5 Consensus size: 46 32420495 GTCAATGCCG * * 32420505 TGTCCCAGACA-GGTCTTACACT-GACT--GATGTCAAGCCGATGCCA 1 TGTCCCAGACATGGTCTTACACTAG-CTCACATCTCAAGCCGATG-CA * * 32420549 TGTCCTAGACATGGTCTTACACTAGCTCACATCTCAAGTCGATGCCA 1 TGTCCCAGACATGGTCTTACACTAGCTCACATCTCAAGCCGATG-CA * * * * * 32420596 TGTCCCAGAAATGGTCTTACACTAACT-ATCATCATCGAGGCTGATGCG 1 TGTCCCAGACATGGTCTTACACTAGCTCA-CATC-TC-AAGCCGATGCA * * * * * * * 32420644 TGTCCTAGACA-CGTCTTACACTAGCACTCGTCTCAATACTGATGCCA 1 TGTCCCAGACATGGTCTTACACTAGCTCACATCTCAA-GCCGATG-CA * * * * 32420691 TGTCCCAGACATGGTCTTACACTAGTACGCATATCTCGAGGCCGGTGCA 1 TGTCCCAGACATGGTCTTACACTAG--CTCACATCTC-AAGCCGATGCA * * * * * 32420740 TGTCCTAGACAT-GTCTTACGCTGGCTCTCGTCTCAAAGCCGATGCA 1 TGTCCCAGACATGGTCTTACACTAGCTCACATCTC-AAGCCGATGCA 32420786 TGTCCCAGACAT-GTCTTACACT 1 TGTCCCAGACATGGTCTTACACT 32420808 GATGCACATA Statistics Matches: 202, Mismatches: 43, Indels: 26 0.75 0.16 0.10 Matches are distributed among these distances: 44 10 0.05 45 14 0.07 46 45 0.22 47 69 0.34 48 34 0.17 49 19 0.09 50 10 0.05 51 1 0.00 ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27 Consensus pattern (46 bp): TGTCCCAGACATGGTCTTACACTAGCTCACATCTCAAGCCGATGCA Found at i:32420770 original size:96 final size:94 Alignment explanation
Indices: 32420499--32420807 Score: 316 Period size: 95 Copynumber: 3.3 Consensus size: 94 32420489 ATCTGTGTCA * * * * * 32420499 ATGCCGTGTCCCAGACA-GGTCTTACACTGA-C-TGAT-GTC-AAGCCGATGCCATGTCCTAGAC 1 ATGCCATGTCCCAGACATGGTCTTACACTAACCATCATCATCGAGGCCGATG-CATGTCCTAGAC * * 32420559 ATGGTCTTACACTAGCTCACATCTCAAGT-CG 65 AT-GTCTTACACTAGCTCTCGTCTCAA-TACG * * * * 32420590 ATGCCATGTCCCAGAAATGGTCTTACACTAACTATCATCATCGAGGCTGATGCGTGTCCTAGACA 1 ATGCCATGTCCCAGACATGGTCTTACACTAACCATCATCATCGAGGCCGATGCATGTCCTAGACA * * 32420655 CGTCTTACACTAGCACTCGTCTCAATACTG 66 TGTCTTACACTAGCTCTCGTCTCAATAC-G * 32420685 ATGCCATGTCCCAGACATGGTCTTACACTAGTACGCAT-ATC-TCGAGGCCGGTGCATGTCCTAG 1 ATGCCATGTCCCAGACATGGTCTTACACTA--AC-CATCATCATCGAGGCCGATGCATGTCCTAG * * 32420748 ACATGTCTTACGCTGGCTCTCGTCTCAA-AGCCG 63 ACATGTCTTACACTAGCTCTCGTCTCAATA--CG 32420781 ATG-CATGTCCCAGACAT-GTCTTACACT 1 ATGCCATGTCCCAGACATGGTCTTACACT 32420808 GATGCACATA Statistics Matches: 184, Mismatches: 22, Indels: 21 0.81 0.10 0.09 Matches are distributed among these distances: 91 15 0.08 92 12 0.07 93 1 0.01 94 35 0.19 95 59 0.32 96 54 0.29 97 6 0.03 98 2 0.01 ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27 Consensus pattern (94 bp): ATGCCATGTCCCAGACATGGTCTTACACTAACCATCATCATCGAGGCCGATGCATGTCCTAGACA TGTCTTACACTAGCTCTCGTCTCAATACG Found at i:32420784 original size:142 final size:142 Alignment explanation
Indices: 32420505--32420807 Score: 314 Period size: 142 Copynumber: 2.2 Consensus size: 142 32420495 GTCAATGCCG * * * * * 32420505 TGTCCCAGACAGGTCTTACACT-G-ACT-GATGTCAA-GCCGATGCCATGTCCTAGACATGGTCT 1 TGTCCCAGACACGTCTTACACTAGCACTCG-TCTCAATACTGATGCCATGTCCCAGACATGGTCT * * 32420566 TACACTAGCTCACATCTCAAGTCGATGCCATGTCCCAGAAATGGTCTTACACTAACTATCATCAT 65 TACACTAGCGCACATCTCAAGCCGATGCCATGTCCCAGAAATGGTCTTACACTAACTATCATCAT * * * * 32420631 CGAGGCTGATGCG 130 CAAAGCCGATGCA * 32420644 TGTCCTAGACACGTCTTACACTAGCACTCGTCTCAATACTGATGCCATGTCCCAGACATGGTCTT 1 TGTCCCAGACACGTCTTACACTAGCACTCGTCTCAATACTGATGCCATGTCCCAGACATGGTCTT * * * * * * ** * * 32420709 ACACTAGTACGCATATCTCGAGGCCGGTG-CATGTCCTAGACAT-GTCTTACGCTGGCTCTCGTC 66 ACACTAG--CGCACATCTC-AAGCCGATGCCATGTCCCAGAAATGGTCTTACACTAACTATCATC 32420772 -TCAAAGCCGATGCA 128 ATCAAAGCCGATGCA * 32420786 TGTCCCAGACATGTCTTACACT 1 TGTCCCAGACACGTCTTACACT 32420808 GATGCACATA Statistics Matches: 133, Mismatches: 24, Indels: 11 0.79 0.14 0.07 Matches are distributed among these distances: 139 20 0.15 140 1 0.01 141 8 0.06 142 63 0.47 143 15 0.11 144 20 0.15 145 6 0.05 ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27 Consensus pattern (142 bp): TGTCCCAGACACGTCTTACACTAGCACTCGTCTCAATACTGATGCCATGTCCCAGACATGGTCTT ACACTAGCGCACATCTCAAGCCGATGCCATGTCCCAGAAATGGTCTTACACTAACTATCATCATC AAAGCCGATGCA Found at i:32423507 original size:50 final size:50 Alignment explanation
Indices: 32423440--32423581 Score: 189 Period size: 50 Copynumber: 2.9 Consensus size: 50 32423430 CACATAGTGA * * * 32423440 GATGCCAATGGCA--TCCCAGATAAGGTCTTACATGGGTTCACACATATC 1 GATGCCAATGCCATGTCCCAGATATGGTCTTACATGGGATCACACATATC * * * 32423488 GATGCCAATGTCATGTCCCAAACATGGTCTTACATGGGATCACACATATC 1 GATGCCAATGCCATGTCCCAGATATGGTCTTACATGGGATCACACATATC * * * 32423538 GATGTCAATGCCATGTCCCTGATATGGTTTTACATGGGATCACA 1 GATGCCAATGCCATGTCCCAGATATGGTCTTACATGGGATCACA 32423582 TATCGAAACT Statistics Matches: 81, Mismatches: 11, Indels: 2 0.86 0.12 0.02 Matches are distributed among these distances: 48 12 0.15 50 69 0.85 ACGTcount: A:0.28, C:0.24, G:0.20, T:0.27 Consensus pattern (50 bp): GATGCCAATGCCATGTCCCAGATATGGTCTTACATGGGATCACACATATC Found at i:32428876 original size:18 final size:17 Alignment explanation
Indices: 32428836--32428870 Score: 54 Period size: 18 Copynumber: 2.1 Consensus size: 17 32428826 TAAAATATAT 32428836 TATTTTTTTAATTGAAAA 1 TATTTTTTT-ATTGAAAA 32428854 TATTTTTTT-TTGAAAA 1 TATTTTTTTATTGAAAA 32428870 T 1 T 32428871 TGATTTATTT Statistics Matches: 17, Mismatches: 0, Indels: 2 0.89 0.00 0.11 Matches are distributed among these distances: 16 8 0.47 18 9 0.53 ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60 Consensus pattern (17 bp): TATTTTTTTATTGAAAA Found at i:32428942 original size:18 final size:19 Alignment explanation
Indices: 32428907--32428945 Score: 53 Period size: 19 Copynumber: 2.1 Consensus size: 19 32428897 TCTTTTGGGG 32428907 TTTTTGCTTAAAATATTTT 1 TTTTTGCTTAAAATATTTT * 32428926 TTTTTGTTTAACAAT-TTTT 1 TTTTTGCTTAA-AATATTTT 32428945 T 1 T 32428946 ACTAAAATCA Statistics Matches: 18, Mismatches: 1, Indels: 2 0.86 0.05 0.10 Matches are distributed among these distances: 19 15 0.83 20 3 0.17 ACGTcount: A:0.23, C:0.05, G:0.05, T:0.67 Consensus pattern (19 bp): TTTTTGCTTAAAATATTTT Found at i:32429049 original size:18 final size:17 Alignment explanation
Indices: 32429018--32429056 Score: 60 Period size: 18 Copynumber: 2.2 Consensus size: 17 32429008 AATTAAAATT 32429018 TAAAAAATAGTTTATAA 1 TAAAAAATAGTTTATAA * 32429035 TAAAATAATATTTTATAA 1 TAAAA-AATAGTTTATAA 32429053 TAAA 1 TAAA 32429057 TTATGTTTTA Statistics Matches: 20, Mismatches: 1, Indels: 1 0.91 0.05 0.05 Matches are distributed among these distances: 17 5 0.25 18 15 0.75 ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38 Consensus pattern (17 bp): TAAAAAATAGTTTATAA Found at i:32429057 original size:17 final size:17 Alignment explanation
Indices: 32429018--32429068 Score: 57 Period size: 18 Copynumber: 2.9 Consensus size: 17 32429008 AATTAAAATT * * 32429018 TAAAAAATAGTTTATAA 1 TAAATAATATTTTATAA 32429035 TAAAATAATATTTTATAA 1 T-AAATAATATTTTATAA * * 32429053 TAAATTATGTTTTATA 1 TAAATAATATTTTATA 32429069 TAAGCTTAAT Statistics Matches: 29, Mismatches: 4, Indels: 2 0.83 0.11 0.06 Matches are distributed among these distances: 17 14 0.48 18 15 0.52 ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45 Consensus pattern (17 bp): TAAATAATATTTTATAA Found at i:32439419 original size:31 final size:32 Alignment explanation
Indices: 32439344--32439429 Score: 97 Period size: 31 Copynumber: 2.8 Consensus size: 32 32439334 CAAAGTTATC * 32439344 TTAAATATTAAAATAAAAATAAAAATTTAGAA 1 TTAAATAATAAAATAAAAATAAAAATTTAGAA * 32439376 TTAAA-ACTAAAATAAATAATAAAAA-TTAG-A 1 TTAAATAATAAAATAAA-AATAAAAATTTAGAA * ** 32439406 TTAAATAAAAAAATATCAATAAAA 1 TTAAATAATAAAATAAAAATAAAA 32439430 TAAGATATTA Statistics Matches: 47, Mismatches: 5, Indels: 6 0.81 0.09 0.10 Matches are distributed among these distances: 30 13 0.28 31 21 0.45 32 13 0.28 ACGTcount: A:0.67, C:0.02, G:0.02, T:0.28 Consensus pattern (32 bp): TTAAATAATAAAATAAAAATAAAAATTTAGAA Found at i:32443306 original size:34 final size:35 Alignment explanation
Indices: 32443268--32443334 Score: 100 Period size: 34 Copynumber: 1.9 Consensus size: 35 32443258 CAGTAAAATA * 32443268 TTTTCCGTAAAATGATTT-TTGAAAAATGTTTTAC 1 TTTTCCGTAAAATGATTTATTGAAAAATATTTTAC * * 32443302 TTTTCTGTAAAATGATTTATTGGAAAATATTTT 1 TTTTCCGTAAAATGATTTATTGAAAAATATTTT 32443335 CTGGTGTTTG Statistics Matches: 29, Mismatches: 3, Indels: 1 0.88 0.09 0.03 Matches are distributed among these distances: 34 17 0.59 35 12 0.41 ACGTcount: A:0.33, C:0.06, G:0.12, T:0.49 Consensus pattern (35 bp): TTTTCCGTAAAATGATTTATTGAAAAATATTTTAC Found at i:32445131 original size:495 final size:493 Alignment explanation
Indices: 32444199--32445322 Score: 2045 Period size: 495 Copynumber: 2.3 Consensus size: 493 32444189 TTTTAAGTTT * * 32444199 TTTATTTTTGATTTAATCATAGACATTTTAAAAAATAAATACATCAATATA-TTTTATATTGAAT 1 TTTAATTTTGATTTAATCATACACATTTTAAAAAATAAATACATCAATATATTTTTATATTGAAT * * 32444263 AAATATAAATATTTATGTATGCAATAAATAAATATAAAATGATGTTATATCAATAATTGTATTAA 66 AAATATAAATATTTATGTATGCAATATATAAATATAAAATGATGTTATATCAATAATTGTGTTAA * 32444328 TAATTTACAAGAACTAGATCAAATTAAAGTTCATATATACAATTTTACCCTGATCCCCATATTTA 131 TAATTTACAAGAACTAGATCAAATTAAAGTTCATATATACAATTGTACCCTGATCCCCATATTTA * 32444393 TCCCTAAAAGCTAAAAATTAAACCCTGATCCCCAAACATCAAACCTTAAATCCTAGATCATAAAT 196 TCCCTAAAAGCTAAAAATTAAACCCTGATCCCCAAACACCAAACCTTAAATCCTAGATCATAAAT * 32444458 TCTAAACCCCAAAATAATAAACATTATATCATAACCCCTATCCCTAAACTCTAAACCATAAAACA 261 CCTAAACCCCAAAATAATAAACATTATATCATAACCCCTATCCCTAAACTCTAAACCATAAAACA * 32444523 TAAACCATAAACCTTTAACCCCAACCCTTAAACCATAATTAGATATTTAATTATATGTACACACC 326 TAAACCATAAACCCTTAACCCCAACCCTTAAACCATAATTAGATATTTAATTATATGTACACACC * 32444588 TAAATTTTGATAGAGATACATCTCAAAATTATATATGAATTTCGATTTAATATGTAATTGTAGAT 391 TAAATTTTGATAGAGATACATCTCAAAATTATATATGAATTTCGATTTAATATATAATTGTAGAT 32444653 GTGAAATTCTAATTGTGGTTTAAATGTATAATTGAAAC 456 GTGAAATTCTAATTGTGGTTTAAATGTATAATTGAAAC 32444691 TTTAATTTTGATTTAATCATACACATTTTAAAAAATAAATACATCAATATATTTTTATATTGAAT 1 TTTAATTTTGATTTAATCATACACATTTTAAAAAATAAATACATCAATATATTTTTATATTGAAT 32444756 AAATATAAATATTTATGTATGCAATATATAAATATAAAATGATGTTATATCAATAATTGTGTTAA 66 AAATATAAATATTTATGTATGCAATATATAAATATAAAATGATGTTATATCAATAATTGTGTTAA 32444821 TAATTTACAAGAACTAGATCAAATTAAAGTTCATATATACAATTGTA-CCTGATCCCCATACATT 131 TAATTTACAAGAACTAGATCAAATTAAAGTTCATATATACAATTGTACCCTGATCCCCAT--ATT * * * * 32444885 TATCCCTAAATGCTAAAAATTAAACTCTGATCCCCAAACGCCAAACCTTAAATCCTAGATTATAA 194 TATCCCTAAAAGCTAAAAATTAAACCCTGATCCCCAAACACCAAACCTTAAATCCTAGATCATAA * 32444950 ATCCTAAACCCCAAAATAATGAACATTATATCATAACCCCTATCCCCTAAACTCTAAACCATAAA 259 ATCCTAAACCCCAAAATAATAAACATTATATCATAACCCCTAT-CCCTAAACTCTAAACCATAAA * 32445015 ACATAAACTATAAACCCTTAACCCCAACCCTTAAACCATAATTAGATATTTAATTATATGTACAC 323 ACATAAACCATAAACCCTTAACCCCAACCCTTAAACCATAATTAGATATTTAATTATATGTACAC * * 32445080 ACCTAAATTTTGATAGAGATACATCTCAGAATTATATATGAATTTCGATTTAATGTATAATTGTA 388 ACCTAAATTTTGATAGAGATACATCTCAAAATTATATATGAATTTCGATTTAATATATAATTGTA 32445145 GATGTGAAATTCTAATTGTGGTTTAAATGTATAATTGAAAC 453 GATGTGAAATTCTAATTGTGGTTTAAATGTATAATTGAAAC 32445186 TTTAATTTTGATTTAATCATACACATTTTAAAAAATAAATACATCAATATATTTTTATATTGAAT 1 TTTAATTTTGATTTAATCATACACATTTTAAAAAATAAATACATCAATATATTTTTATATTGAAT * 32445251 AAATATAAATATTTATGTATGCAATATATAAATATAAAATGATGTTATATCAATAATTATGTTAA 66 AAATATAAATATTTATGTATGCAATATATAAATATAAAATGATGTTATATCAATAATTGTGTTAA 32445316 TAATTTA 131 TAATTTA 32445323 TGCTTTTGGG Statistics Matches: 610, Mismatches: 18, Indels: 5 0.96 0.03 0.01 Matches are distributed among these distances: 492 61 0.10 493 122 0.20 494 104 0.17 495 323 0.53 ACGTcount: A:0.43, C:0.15, G:0.07, T:0.35 Consensus pattern (493 bp): TTTAATTTTGATTTAATCATACACATTTTAAAAAATAAATACATCAATATATTTTTATATTGAAT AAATATAAATATTTATGTATGCAATATATAAATATAAAATGATGTTATATCAATAATTGTGTTAA TAATTTACAAGAACTAGATCAAATTAAAGTTCATATATACAATTGTACCCTGATCCCCATATTTA TCCCTAAAAGCTAAAAATTAAACCCTGATCCCCAAACACCAAACCTTAAATCCTAGATCATAAAT CCTAAACCCCAAAATAATAAACATTATATCATAACCCCTATCCCTAAACTCTAAACCATAAAACA TAAACCATAAACCCTTAACCCCAACCCTTAAACCATAATTAGATATTTAATTATATGTACACACC TAAATTTTGATAGAGATACATCTCAAAATTATATATGAATTTCGATTTAATATATAATTGTAGAT GTGAAATTCTAATTGTGGTTTAAATGTATAATTGAAAC Found at i:32445622 original size:41 final size:41 Alignment explanation
Indices: 32445576--32445718 Score: 189 Period size: 41 Copynumber: 3.5 Consensus size: 41 32445566 TACTTTTTTA * * 32445576 CGGCGTTTTTCCAAAAGTGCCACTAAAACCTCGACCTATAG 1 CGGCGTTTTTCCAAAAGCGCCACTAAAACCTCGATCTATAG * * 32445617 CGGCGTTTTTCTAAAAGCGCCGCTAAAACCTCGATCTATAG 1 CGGCGTTTTTCCAAAAGCGCCACTAAAACCTCGATCTATAG * ** * * 32445658 CGGCGCTTTTGGAAAAACGCCA-TTAAACCTCGATCTATAG 1 CGGCGTTTTTCCAAAAGCGCCACTAAAACCTCGATCTATAG * 32445698 TGGCGTTTTTCCAAAAGCGCC 1 CGGCGTTTTTCCAAAAGCGCC 32445719 GCTATTGTTC Statistics Matches: 87, Mismatches: 15, Indels: 1 0.84 0.15 0.01 Matches are distributed among these distances: 40 33 0.38 41 54 0.62 ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26 Consensus pattern (41 bp): CGGCGTTTTTCCAAAAGCGCCACTAAAACCTCGATCTATAG Found at i:32445760 original size:41 final size:41 Alignment explanation
Indices: 32445708--32445786 Score: 122 Period size: 41 Copynumber: 1.9 Consensus size: 41 32445698 TGGCGTTTTT * * 32445708 CCAAAAGCGCCGCTATTGTTCAGTTTTTAGCGACGTTTGGA 1 CCAAAAACGCCGCTATTGCTCAGTTTTTAGCGACGTTTGGA * * 32445749 CCAAAAACGCCGCTATTGCTCAGTTTTTTGCGGCGTTT 1 CCAAAAACGCCGCTATTGCTCAGTTTTTAGCGACGTTT 32445787 TATTGCAAAC Statistics Matches: 34, Mismatches: 4, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 41 34 1.00 ACGTcount: A:0.20, C:0.24, G:0.23, T:0.33 Consensus pattern (41 bp): CCAAAAACGCCGCTATTGCTCAGTTTTTAGCGACGTTTGGA Found at i:32453818 original size:172 final size:173 Alignment explanation
Indices: 32453536--32453854 Score: 453 Period size: 172 Copynumber: 1.8 Consensus size: 173 32453526 CTTATTATTG * * * * * * 32453536 AGTTAACTTATAATTGAAAAACTAAGTAACATTATTTGCCTTTTTGGAGTCTTATATTTTAAAAA 1 AGTTAACTTATAATCGAAAAACTAACTAACATTATTTACCTTATTAGAGTCTTAGATTTTAAAAA * * * ** 32453601 TGAGCGAATGAATCATTTAAATTCAATCTAAGATTCATATAATATATGTTTTTTTATCCTTACAA 66 TGAGCGAATGAATCATTTAAATTAAATCCAAGATTCATATAATATATATTTACTTATCCTTACAA 32453666 CTTT-ATTAAAATTTGTACTATCAATAATGAGGTTGTGGCATTC 131 -TTTCATTAAAATTTGTACTATCAATAATGAGGTTGTGGCATTC *** * * 32453709 AGTTAACTTATAATCGAAATGTTAACTAACATTGTTTACCTTATTAGAGTCTTAGATTTT-AAAT 1 AGTTAACTTATAATCGAAAAACTAACTAACATTATTTACCTTATTAGAGTCTTAGATTTTAAAAA * 32453773 TGAGTGAATGAATCATTTAAATTAAATCCAAGATTCATATAATATATATTTACTTATCCTTACAA 66 TGAGCGAATGAATCATTTAAATTAAATCCAAGATTCATATAATATATATTTACTTATCCTTACAA * 32453838 TTTCATTTAAATTTGTA 131 TTTCATTAAAATTTGTA 32453855 TGATCCTTAA Statistics Matches: 127, Mismatches: 18, Indels: 3 0.86 0.12 0.02 Matches are distributed among these distances: 171 3 0.02 172 74 0.58 173 50 0.39 ACGTcount: A:0.37, C:0.11, G:0.10, T:0.42 Consensus pattern (173 bp): AGTTAACTTATAATCGAAAAACTAACTAACATTATTTACCTTATTAGAGTCTTAGATTTTAAAAA TGAGCGAATGAATCATTTAAATTAAATCCAAGATTCATATAATATATATTTACTTATCCTTACAA TTTCATTAAAATTTGTACTATCAATAATGAGGTTGTGGCATTC Found at i:32453888 original size:172 final size:173 Alignment explanation
Indices: 32453498--32453904 Score: 452 Period size: 172 Copynumber: 2.4 Consensus size: 173 32453488 TTCAATATTC * * * * 32453498 ATTAAAATTT-TACCAT-AATCAATGAGGTCT-TATTATTGAGTTAACTTATAATTGAAAAACTA 1 ATTAAAATTTGTACTATCAAT-AATGAGGT-TATATTATTCAGTTAACTTATAATTGAAATATTA * * * * * * 32453560 AGTAACATTATTTGCCTTTTTGGAGTCTTATATTTTAAAAATGAGCGAATGAATCATTTAAATTC 64 ACTAACATTATTTACCTTATTAGAGTCTTAGATTTTAAAAATGAGCGAATGAATCATTTAAATTA * * ** 32453625 AATCTAAGATTCATATAATATATGTTTTTTTATCCTTACAACTTT 129 AATCCAAGATTCATATAATATATATTTACTTATCCTTACAACTTT * *** * * 32453670 ATTAAAATTTGTACTATCAATAATGAGGTTGTGGCATTCAGTTAACTTATAATCGAAATGTTAAC 1 ATTAAAATTTGTACTATCAATAATGAGGTTATATTATTCAGTTAACTTATAATTGAAATATTAAC * * * 32453735 TAACATTGTTTACCTTATTAGAGTCTTAGATTTT-AAATTGAGTGAATGAATCATTTAAATTAAA 66 TAACATTATTTACCTTATTAGAGTCTTAGATTTTAAAAATGAGCGAATGAATCATTTAAATTAAA 32453799 TCCAAGATTCATATAATATATATTTACTTATCCTTACAA-TTT 131 TCCAAGATTCATATAATATATATTTACTTATCCTTACAACTTT * ** * ** 32453841 CATTTAAATTTGTA-TGATCCTTAATTA-GTTCATATTATTTTGTTAAC-TATAATTGAAATATT 1 -ATTAAAATTTGTACT-ATCAATAATGAGGTT-ATATTATTCAGTTAACTTATAATTGAAATATT 32453903 AA 63 AA 32453905 TTAAATTTTG Statistics Matches: 195, Mismatches: 34, Indels: 13 0.81 0.14 0.05 Matches are distributed among these distances: 171 22 0.11 172 103 0.53 173 67 0.34 174 3 0.02 ACGTcount: A:0.37, C:0.11, G:0.10, T:0.43 Consensus pattern (173 bp): ATTAAAATTTGTACTATCAATAATGAGGTTATATTATTCAGTTAACTTATAATTGAAATATTAAC TAACATTATTTACCTTATTAGAGTCTTAGATTTTAAAAATGAGCGAATGAATCATTTAAATTAAA TCCAAGATTCATATAATATATATTTACTTATCCTTACAACTTT Found at i:32457256 original size:11 final size:11 Alignment explanation
Indices: 32457240--32457277 Score: 60 Period size: 11 Copynumber: 3.5 Consensus size: 11 32457230 TTTACATTAT 32457240 AATTTTTTAAA 1 AATTTTTTAAA 32457251 AA-TTTTTAAA 1 AATTTTTTAAA * 32457261 AATTTTTAAAA 1 AATTTTTTAAA 32457272 AATTTT 1 AATTTT 32457278 AATTAATCAT Statistics Matches: 25, Mismatches: 1, Indels: 2 0.89 0.04 0.07 Matches are distributed among these distances: 10 10 0.40 11 15 0.60 ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53 Consensus pattern (11 bp): AATTTTTTAAA Found at i:32457261 original size:9 final size:10 Alignment explanation
Indices: 32457243--32457279 Score: 65 Period size: 10 Copynumber: 3.7 Consensus size: 10 32457233 ACATTATAAT 32457243 TTTTTAAAAA 1 TTTTTAAAAA 32457253 TTTTTAAAAA 1 TTTTTAAAAA 32457263 TTTTTAAAAA 1 TTTTTAAAAA * 32457273 ATTTTAA 1 TTTTTAA 32457280 TTAATCATTG Statistics Matches: 26, Mismatches: 1, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 10 26 1.00 ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51 Consensus pattern (10 bp): TTTTTAAAAA Found at i:32465272 original size:21 final size:20 Alignment explanation
Indices: 32465233--32465272 Score: 53 Period size: 21 Copynumber: 1.9 Consensus size: 20 32465223 CAAAATTTGT * 32465233 ATAACTATCATTAAACATTC 1 ATAACTATCATCAAACATTC * 32465253 ATAATCTATCATCAATCATT 1 ATAA-CTATCATCAAACATT 32465273 AAAATACATG Statistics Matches: 17, Mismatches: 2, Indels: 1 0.85 0.10 0.05 Matches are distributed among these distances: 20 4 0.24 21 13 0.76 ACGTcount: A:0.42, C:0.20, G:0.00, T:0.38 Consensus pattern (20 bp): ATAACTATCATCAAACATTC Found at i:32471238 original size:40 final size:40 Alignment explanation
Indices: 32471190--32471456 Score: 480 Period size: 40 Copynumber: 6.7 Consensus size: 40 32471180 GCAAACACAT * * 32471190 TTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATAA 1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA * 32471230 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA 1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA * 32471270 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA 1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA * 32471310 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA 1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA * 32471350 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA 1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA 32471390 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA 1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA 32471430 TTGCCTTCGGGTCTTAGCCCGGATATA 1 TTGCCTTCGGGTCTTAGCCCGGATATA 32471457 ATCCAATGCT Statistics Matches: 221, Mismatches: 6, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 40 221 1.00 ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30 Consensus pattern (40 bp): TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA Found at i:32487051 original size:98 final size:99 Alignment explanation
Indices: 32486880--32487089 Score: 314 Period size: 98 Copynumber: 2.1 Consensus size: 99 32486870 CACTCATTTA * * 32486880 GCCGAATACACAAGATCAAATATAACATCACATATGTACATACCTATATGGCCGAATATACAAGA 1 GCCGAATATACAACATCAAATATAACATCACATA-GTACATACCTATATGGCCGAATATACAAGA * * * 32486945 TCAAATATAACATCACATATGTATATACCTATGTG 65 TCAAATATAACACCACATATATACATACCTATGTG * * * * 32486980 GCCGAATATTCAACATCAAATATAACATCACATA-TATATACCTATGTGGCCGAATATACAAGGT 1 GCCGAATATACAACATCAAATATAACATCACATAGTACATACCTATATGGCCGAATATACAAGAT * 32487044 CAAATATAACACCACATCTATACATACCTATGTG 66 CAAATATAACACCACATATATACATACCTATGTG 32487078 GCCGAATATACA 1 GCCGAATATACA 32487090 TGGTCATTTA Statistics Matches: 99, Mismatches: 11, Indels: 2 0.88 0.10 0.02 Matches are distributed among these distances: 98 68 0.69 100 31 0.31 ACGTcount: A:0.42, C:0.21, G:0.11, T:0.26 Consensus pattern (99 bp): GCCGAATATACAACATCAAATATAACATCACATAGTACATACCTATATGGCCGAATATACAAGAT CAAATATAACACCACATATATACATACCTATGTG Found at i:32487095 original size:50 final size:50 Alignment explanation
Indices: 32486880--32487089 Score: 316 Period size: 50 Copynumber: 4.2 Consensus size: 50 32486870 CACTCATTTA * * * 32486880 GCCGAATACACAAGATCAAATATAACATCACATATGTACATACCTATATG 1 GCCGAATATACAAGATCAAATATAACATCACATATATACATACCTATGTG * * 32486930 GCCGAATATACAAGATCAAATATAACATCACATATGTATATACCTATGTG 1 GCCGAATATACAAGATCAAATATAACATCACATATATACATACCTATGTG * * 32486980 GCCGAATATTCAACATCAAATATAACATCACATATAT--ATACCTATGTG 1 GCCGAATATACAAGATCAAATATAACATCACATATATACATACCTATGTG * * * 32487028 GCCGAATATACAAGGTCAAATATAACACCACATCTATACATACCTATGTG 1 GCCGAATATACAAGATCAAATATAACATCACATATATACATACCTATGTG 32487078 GCCGAATATACA 1 GCCGAATATACA 32487090 TGGTCATTTA Statistics Matches: 147, Mismatches: 11, Indels: 4 0.91 0.07 0.02 Matches are distributed among these distances: 48 43 0.29 50 104 0.71 ACGTcount: A:0.42, C:0.21, G:0.11, T:0.26 Consensus pattern (50 bp): GCCGAATATACAAGATCAAATATAACATCACATATATACATACCTATGTG Found at i:32491817 original size:40 final size:40 Alignment explanation
Indices: 32491768--32491854 Score: 113 Period size: 40 Copynumber: 2.2 Consensus size: 40 32491758 GTGTTGTACA * 32491768 TAGCTGAAGCTAT-CTCAAATCGCACACTAAGCGCCACATT 1 TAGCCGAAGCTATAC-CAAATCGCACACTAAGCGCCACATT * * * * 32491808 TAGCCGAAGCTATACCGAATCGCATACTAAGTGCCATATT 1 TAGCCGAAGCTATACCAAATCGCACACTAAGCGCCACATT 32491848 TAGCCGA 1 TAGCCGA 32491855 TATGTCATCA Statistics Matches: 41, Mismatches: 5, Indels: 2 0.85 0.10 0.04 Matches are distributed among these distances: 40 40 0.98 41 1 0.02 ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23 Consensus pattern (40 bp): TAGCCGAAGCTATACCAAATCGCACACTAAGCGCCACATT Found at i:32492276 original size:8 final size:8 Alignment explanation
Indices: 32492263--32492301 Score: 78 Period size: 8 Copynumber: 4.9 Consensus size: 8 32492253 TTTTAACCAT 32492263 ATAATTTC 1 ATAATTTC 32492271 ATAATTTC 1 ATAATTTC 32492279 ATAATTTC 1 ATAATTTC 32492287 ATAATTTC 1 ATAATTTC 32492295 ATAATTT 1 ATAATTT 32492302 AATCCCTAAT Statistics Matches: 31, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 31 1.00 ACGTcount: A:0.38, C:0.10, G:0.00, T:0.51 Consensus pattern (8 bp): ATAATTTC Found at i:32493198 original size:12 final size:13 Alignment explanation
Indices: 32493181--32493218 Score: 51 Period size: 14 Copynumber: 2.9 Consensus size: 13 32493171 ATCCTGGAAT 32493181 ATTAAG-ACAAGA 1 ATTAAGAACAAGA * 32493193 ATTAAGAACACATA 1 ATTAAGAACA-AGA 32493207 ATTAAGAACAAG 1 ATTAAGAACAAG 32493219 TCAAATATTT Statistics Matches: 22, Mismatches: 2, Indels: 3 0.81 0.07 0.11 Matches are distributed among these distances: 12 6 0.27 13 4 0.18 14 12 0.55 ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18 Consensus pattern (13 bp): ATTAAGAACAAGA Found at i:32495720 original size:6 final size:6 Alignment explanation
Indices: 32495703--32495736 Score: 50 Period size: 6 Copynumber: 5.5 Consensus size: 6 32495693 TAAAGAAGAT * 32495703 AAATAA AGATAA AAATAA AAATAAA AAATAA AAA 1 AAATAA AAATAA AAATAA AAAT-AA AAATAA AAA 32495737 GTCTTTAAAC Statistics Matches: 25, Mismatches: 2, Indels: 2 0.86 0.07 0.07 Matches are distributed among these distances: 6 19 0.76 7 6 0.24 ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15 Consensus pattern (6 bp): AAATAA Found at i:32495720 original size:12 final size:13 Alignment explanation
Indices: 32495703--32495736 Score: 52 Period size: 13 Copynumber: 2.7 Consensus size: 13 32495693 TAAAGAAGAT * 32495703 AAATAAAGAT-AA 1 AAATAAAAATAAA 32495715 AAATAAAAATAAA 1 AAATAAAAATAAA 32495728 AAATAAAAA 1 AAATAAAAA 32495737 GTCTTTAAAC Statistics Matches: 20, Mismatches: 1, Indels: 1 0.91 0.05 0.05 Matches are distributed among these distances: 12 9 0.45 13 11 0.55 ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15 Consensus pattern (13 bp): AAATAAAAATAAA Found at i:32502351 original size:15 final size:16 Alignment explanation
Indices: 32502331--32502360 Score: 53 Period size: 15 Copynumber: 1.9 Consensus size: 16 32502321 GAAAATTACC 32502331 AAAATGGG-CTAAATA 1 AAAATGGGACTAAATA 32502346 AAAATGGGACTAAAT 1 AAAATGGGACTAAAT 32502361 TGGAATATCT Statistics Matches: 14, Mismatches: 0, Indels: 1 0.93 0.00 0.07 Matches are distributed among these distances: 15 8 0.57 16 6 0.43 ACGTcount: A:0.53, C:0.07, G:0.20, T:0.20 Consensus pattern (16 bp): AAAATGGGACTAAATA Found at i:32505869 original size:31 final size:31 Alignment explanation
Indices: 32505825--32505883 Score: 77 Period size: 31 Copynumber: 1.9 Consensus size: 31 32505815 TGGTATCATG 32505825 TATAAATTCATCAACTT-TCACTTACTTTGCA 1 TATAAATTCATCAA-TTATCACTTACTTTGCA * 32505856 TATAAACTT-ATCAATTATTACTTACTTT 1 TATAAA-TTCATCAATTATCACTTACTTT 32505884 CCAAACTTAT Statistics Matches: 25, Mismatches: 1, Indels: 4 0.83 0.03 0.13 Matches are distributed among these distances: 30 2 0.08 31 21 0.84 32 2 0.08 ACGTcount: A:0.34, C:0.19, G:0.02, T:0.46 Consensus pattern (31 bp): TATAAATTCATCAATTATCACTTACTTTGCA Found at i:32506791 original size:21 final size:20 Alignment explanation
Indices: 32506763--32506802 Score: 62 Period size: 21 Copynumber: 1.9 Consensus size: 20 32506753 CAAAATTTGT 32506763 ATAACTATCATTAAACATTC 1 ATAACTATCATTAAACATTC * 32506783 ATAATCTATCATTAATCATT 1 ATAA-CTATCATTAAACATT 32506803 AAAATACATG Statistics Matches: 18, Mismatches: 1, Indels: 1 0.90 0.05 0.05 Matches are distributed among these distances: 20 4 0.22 21 14 0.78 ACGTcount: A:0.42, C:0.17, G:0.00, T:0.40 Consensus pattern (20 bp): ATAACTATCATTAAACATTC Found at i:32508437 original size:24 final size:24 Alignment explanation
Indices: 32508405--32508452 Score: 96 Period size: 24 Copynumber: 2.0 Consensus size: 24 32508395 TCCACTAAGA 32508405 AAACCTACATAAAAATTCATTACC 1 AAACCTACATAAAAATTCATTACC 32508429 AAACCTACATAAAAATTCATTACC 1 AAACCTACATAAAAATTCATTACC 32508453 CTCACGTCTA Statistics Matches: 24, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 24 24 1.00 ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25 Consensus pattern (24 bp): AAACCTACATAAAAATTCATTACC Found at i:32511325 original size:16 final size:16 Alignment explanation
Indices: 32511306--32511336 Score: 53 Period size: 16 Copynumber: 1.9 Consensus size: 16 32511296 GACAAAAGTC 32511306 GAAATGCCGAAAAGCT 1 GAAATGCCGAAAAGCT * 32511322 GAAATGCCGGAAAGC 1 GAAATGCCGAAAAGC 32511337 CAAAATTTAG Statistics Matches: 14, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 16 14 1.00 ACGTcount: A:0.42, C:0.19, G:0.29, T:0.10 Consensus pattern (16 bp): GAAATGCCGAAAAGCT Found at i:32511595 original size:29 final size:29 Alignment explanation
Indices: 32511556--32511639 Score: 123 Period size: 30 Copynumber: 2.9 Consensus size: 29 32511546 GCATGAATAT * * 32511556 AATGTGATTTGGGTCTAATGGGCTACATA 1 AATGTGATTTGGGCCTAATGGGCCACATA * * 32511585 AATGTGATTTGGGCCTAAAGAGGCCATATA 1 AATGTGATTTGGGCCTAATG-GGCCACATA 32511615 AATGTGATTTGGGCCTAATGGGCCA 1 AATGTGATTTGGGCCTAATGGGCCA 32511640 TGTGAATATA Statistics Matches: 49, Mismatches: 5, Indels: 2 0.88 0.09 0.04 Matches are distributed among these distances: 29 23 0.47 30 26 0.53 ACGTcount: A:0.29, C:0.13, G:0.29, T:0.30 Consensus pattern (29 bp): AATGTGATTTGGGCCTAATGGGCCACATA Found at i:32511618 original size:30 final size:29 Alignment explanation
Indices: 32511552--32511671 Score: 127 Period size: 29 Copynumber: 4.2 Consensus size: 29 32511542 GTGAGCATGA * * 32511552 ATAT-AATGTGATTTGGGTCTAATGGGCT 1 ATATAAATGTGATTTGGGCCTAATGGGCC * * 32511580 ACATAAATGTGATTTGGGCCTAAAGAGGCC 1 ATATAAATGTGATTTGGGCCTAATG-GGCC 32511610 ATATAAATGTGATTTGGGCCTAATGGGCC 1 ATATAAATGTGATTTGGGCCTAATGGGCC * * * * * * 32511639 ATGTGAATAT-AATTGGGTCTAGTGGGCC 1 ATATAAATGTGATTTGGGCCTAATGGGCC 32511667 ATATA 1 ATATA 32511672 CAGGTATGTG Statistics Matches: 76, Mismatches: 14, Indels: 4 0.81 0.15 0.04 Matches are distributed among these distances: 28 21 0.28 29 29 0.38 30 26 0.34 ACGTcount: A:0.29, C:0.12, G:0.28, T:0.32 Consensus pattern (29 bp): ATATAAATGTGATTTGGGCCTAATGGGCC Found at i:32515426 original size:55 final size:54 Alignment explanation
Indices: 32515270--32515426 Score: 178 Period size: 55 Copynumber: 2.9 Consensus size: 54 32515260 CGAGTGCTAG * * * 32515270 ACACAGGCGTGTCACATGCCCGTGTT-TATTTGGCAGGTTCGACCACAGGTGTTTC 1 ACACGGGCGTGTCGCACGCCCGTGTTGT-TTTGGCAGGTTCGACCAC-GGTGTTTC * * 32515325 ACACGGGCGTGTCGAAC-CCCAGTGTTGTTTTGGCAGGTTCGCCCACGGT-TCTTCC 1 ACACGGGCGTGTCGCACGCCC-GTGTTGTTTTGGCAGGTTCGACCACGGTGT-TT-C * 32515380 ACACGGGCGTGTCGCACGGCCGTGTTGTTTTGGCAGGCTT-GACCACG 1 ACACGGGCGTGTCGCACGCCCGTGTTGTTTTGGCAGG-TTCGACCACG 32515427 ACCATATCGT Statistics Matches: 88, Mismatches: 8, Indels: 12 0.81 0.07 0.11 Matches are distributed among these distances: 53 1 0.01 54 8 0.09 55 74 0.84 56 5 0.06 ACGTcount: A:0.15, C:0.28, G:0.31, T:0.27 Consensus pattern (54 bp): ACACGGGCGTGTCGCACGCCCGTGTTGTTTTGGCAGGTTCGACCACGGTGTTTC Found at i:32518892 original size:84 final size:84 Alignment explanation
Indices: 32518751--32518918 Score: 336 Period size: 84 Copynumber: 2.0 Consensus size: 84 32518741 TCCGTAGAGA 32518751 TCCCTAACTTATGTTATTATCCCTATTCAAGACTAATAACGTCTAATCCCTAAATTAAATAACTG 1 TCCCTAACTTATGTTATTATCCCTATTCAAGACTAATAACGTCTAATCCCTAAATTAAATAACTG 32518816 AGACTTTTCTCTAATTAAC 66 AGACTTTTCTCTAATTAAC 32518835 TCCCTAACTTATGTTATTATCCCTATTCAAGACTAATAACGTCTAATCCCTAAATTAAATAACTG 1 TCCCTAACTTATGTTATTATCCCTATTCAAGACTAATAACGTCTAATCCCTAAATTAAATAACTG 32518900 AGACTTTTCTCTAATTAAC 66 AGACTTTTCTCTAATTAAC 32518919 ACTCTAGGGT Statistics Matches: 84, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 84 84 1.00 ACGTcount: A:0.35, C:0.23, G:0.06, T:0.37 Consensus pattern (84 bp): TCCCTAACTTATGTTATTATCCCTATTCAAGACTAATAACGTCTAATCCCTAAATTAAATAACTG AGACTTTTCTCTAATTAAC Done.