Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 103 of 356
Found at i:32523430 original size:28 final size:29
Alignment explanation
Indices: 32523398--32523496 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
32523388 ATAATAAGCC
*
32523398 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
32523426 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
32523454 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
32523483 CGCACACTTAGTGC
1 CGCACACTTAGTGC
32523497 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:32530579 original size:28 final size:29
Alignment explanation
Indices: 32530547--32530645 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
32530537 ATAATAAGCC
*
32530547 CGCACACTTAGTGCTTA-ATAGTTGAACT
1 CGCACACTTAGTGCTTACATAATTGAACT
* **
32530575 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATTGAACT
* *
32530603 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATTGAACT
32530632 CGCACACTTAGTGC
1 CGCACACTTAGTGC
32530646 CAATCTCATG
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
27 2 0.03
28 36 0.60
29 19 0.32
30 3 0.05
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATTGAACT
Found at i:32536997 original size:22 final size:20
Alignment explanation
Indices: 32536957--32536997 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
32536947 GTAGGATCTG
*
32536957 TTTTCTAAAAATTTGCATTA
1 TTTTCTAAAAAGTTGCATTA
32536977 TTTTCTAAAAACCGTTGCATT
1 TTTTCTAAAAA--GTTGCATT
32536998 GACATCATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 11 0.61
22 7 0.39
ACGTcount: A:0.32, C:0.15, G:0.07, T:0.46
Consensus pattern (20 bp):
TTTTCTAAAAAGTTGCATTA
Found at i:32537285 original size:14 final size:14
Alignment explanation
Indices: 32537266--32537304 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
32537256 TACTTTGCAC
*
32537266 TTGGACTTTGGTAT
1 TTGGACTTTGGAAT
*
32537280 TTGGACTTTGAAAT
1 TTGGACTTTGGAAT
32537294 TTGGA-TTTGGA
1 TTGGACTTTGGA
32537305 TTCTCTGCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
13 5 0.23
14 17 0.77
ACGTcount: A:0.21, C:0.05, G:0.28, T:0.46
Consensus pattern (14 bp):
TTGGACTTTGGAAT
Found at i:32546047 original size:22 final size:22
Alignment explanation
Indices: 32545998--32546039 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
32545988 CCGAATGGTA
32545998 GTCAATGACAATATCATAATCT
1 GTCAATGACAATATCATAATCT
32546020 GTCAATGACAATATCATAAT
1 GTCAATGACAATATCATAAT
32546040 TTTTCAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.43, C:0.17, G:0.10, T:0.31
Consensus pattern (22 bp):
GTCAATGACAATATCATAATCT
Found at i:32555964 original size:27 final size:26
Alignment explanation
Indices: 32555920--32555970 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
32555910 CTCGCTGCAA
*
32555920 TCTGGTGGCCTCGCCACATATATCTAT
1 TCTGGTGACCTCGCCACA-ATATCTAT
* *
32555947 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
32555971 GCCAGCCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTAT
Found at i:32556039 original size:26 final size:27
Alignment explanation
Indices: 32556010--32556069 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
32556000 CCACATATAT
*
32556010 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
32556036 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
32556063 ATATCTG
1 ATATCTG
32556070 GCAGCCTCAC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:32562052 original size:46 final size:46
Alignment explanation
Indices: 32561999--32562124 Score: 207
Period size: 46 Copynumber: 2.7 Consensus size: 46
32561989 TGGTTGAGCA
*
32561999 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
32562045 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
32562091 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
32562125 GGGGCGGGTT
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:32562386 original size:19 final size:20
Alignment explanation
Indices: 32562349--32562386 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
32562339 ATAAGGTGGT
32562349 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
32562369 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
32562387 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:32563447 original size:79 final size:80
Alignment explanation
Indices: 32563346--32563530 Score: 189
Period size: 79 Copynumber: 2.3 Consensus size: 80
32563336 GCTACTCGTT
* * * *
32563346 CAAATGCCTTCGAGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAA-GCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
32563409 GGATTTAGTAAC-TCGCA
63 GGATATAGTAACTTAGCA
* * * **
32563426 CAATTGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGTACAAATGCCTTCGGATCTTAGTCCGG
1 CAA-AGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
32563490 ATATGGTCACTTAGCA
65 ATATAGTAACTTAGCA
32563506 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
32563531 CATCATTCAA
Statistics
Matches: 86, Mismatches: 14, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
78 3 0.03
79 53 0.62
80 30 0.35
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCA
Found at i:32563473 original size:39 final size:39
Alignment explanation
Indices: 32563346--32563530 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 39
32563336 GCTACTCGTT
* *
32563346 CAAATGCCTTCGAGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCG-GGCTTAGCCCGGATT-TAGTAACTCGCA
* *
32563386 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
32563426 CAATTGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGTA
1 CAAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
32563465 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGATTTAGTAAC-TCGCA
32563506 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
32563531 CATCATTCAA
Statistics
Matches: 120, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
39 34 0.28
40 77 0.64
41 9 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCA
Found at i:32570928 original size:79 final size:80
Alignment explanation
Indices: 32570827--32571009 Score: 212
Period size: 79 Copynumber: 2.3 Consensus size: 80
32570817 TACTCGTTCA
* * *
32570827 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
32570890 ATTTAGTAAC-TCGCAC
64 ATATAGTAACTTAGCAC
* **
32570906 AATTGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AA-TGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
32570970 TATGGTCACTTAGCAC
65 TATAGTAACTTAGCAC
*
32570986 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
32571010 CATCATTCAA
Statistics
Matches: 88, Mismatches: 11, Indels: 9
0.81 0.10 0.08
Matches are distributed among these distances:
78 3 0.03
79 56 0.64
80 29 0.33
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:32570942 original size:39 final size:40
Alignment explanation
Indices: 32570829--32571009 Score: 208
Period size: 40 Copynumber: 4.5 Consensus size: 40
32570819 CTCGTTCAAA
*
32570829 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAT
1 TGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAT
*
32570869 TGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAT
1 TGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAT
* * *
32570909 TGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAT
* * * * *
32570948 TGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAA-
1 TGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCACAAT
*
32570988 AGCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGACTTAGCCCGGA
32571010 CATCATTCAA
Statistics
Matches: 121, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 75 0.62
41 12 0.10
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
TGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAT
Found at i:32575585 original size:27 final size:27
Alignment explanation
Indices: 32575524--32575578 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
32575514 ACAATTATCA
*
32575524 AAATACCCCTGTAAGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAAATACCG
* *
32575551 AAATACCCCTGTAGGGTAGGACTACCG
1 AAATACCCCTGTAGGGTAGAAATACCG
32575578 A
1 A
32575579 TTTACCCTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.36, C:0.24, G:0.22, T:0.18
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAAATACCG
Found at i:32576333 original size:31 final size:31
Alignment explanation
Indices: 32576294--32576401 Score: 99
Period size: 27 Copynumber: 3.7 Consensus size: 31
32576284 CCTCGCTTCA
32576294 ATCTGGTGGCTTCGCCACATATATATATCTGT
1 ATCTGGTGGCTTCGCCACA-ATATATATCTGT
* *
32576326 -TCTGGTGGCCTAGCCAC---A-ATATCTGT
1 ATCTGGTGGCTTCGCCACAATATATATCTGT
*
32576352 ATCTGGTGACTTCGCCAC---A-ATATCTGT
1 ATCTGGTGGCTTCGCCACAATATATATCTGT
* *
32576379 ATCTGGTGACTTCGTCACAATAT
1 ATCTGGTGGCTTCGCCACAATAT
32576402 CTGGCAGCCT
Statistics
Matches: 65, Mismatches: 6, Indels: 11
0.79 0.07 0.13
Matches are distributed among these distances:
26 8 0.12
27 41 0.63
30 1 0.02
31 15 0.23
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.34
Consensus pattern (31 bp):
ATCTGGTGGCTTCGCCACAATATATATCTGT
Found at i:32576368 original size:27 final size:27
Alignment explanation
Indices: 32576318--32576404 Score: 131
Period size: 27 Copynumber: 3.3 Consensus size: 27
32576308 CCACATATAT
* * *
32576318 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACTTCGCCACA
32576344 ATATCTGTATCTGGTGACTTCGCCACA
1 ATATCTGTATCTGGTGACTTCGCCACA
*
32576371 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACTTCGCCACA
32576398 ATATCTG
1 ATATCTG
32576405 GCAGCCTCGC
Statistics
Matches: 56, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
26 8 0.14
27 48 0.86
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.34
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACTTCGCCACA
Found at i:32596582 original size:38 final size:38
Alignment explanation
Indices: 32596540--32596622 Score: 112
Period size: 38 Copynumber: 2.2 Consensus size: 38
32596530 AGTGATATTC
*
32596540 AGGCTTTGTGCCGATGATATTCGGGCTTTGTACCTAGA
1 AGGCTTTGTGCCGATGATATTCGGGCTCTGTACCTAGA
* * * * *
32596578 AGGCTTTGTGCCGATTATATTTGGGCTCTGTGCCTTGT
1 AGGCTTTGTGCCGATGATATTCGGGCTCTGTACCTAGA
32596616 AGGCTTT
1 AGGCTTT
32596623 ATGCTGGTGT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.14, C:0.18, G:0.29, T:0.39
Consensus pattern (38 bp):
AGGCTTTGTGCCGATGATATTCGGGCTCTGTACCTAGA
Found at i:32603216 original size:24 final size:24
Alignment explanation
Indices: 32603187--32603238 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
32603177 ATTCTCCTAA
32603187 TCAATCACTTGTATTTCTAAAAGC
1 TCAATCACTTGTATTTCTAAAAGC
*
32603211 TCAATCACTTGTATTTCTACAAGC
1 TCAATCACTTGTATTTCTAAAAGC
32603235 TCAA
1 TCAA
32603239 GCATATTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.33, C:0.23, G:0.08, T:0.37
Consensus pattern (24 bp):
TCAATCACTTGTATTTCTAAAAGC
Found at i:32604778 original size:25 final size:25
Alignment explanation
Indices: 32604750--32604806 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 25
32604740 TTTAAGAACC
*
32604750 GAAAATACCAAAAATCAAAAGAAAA
1 GAAAAGACCAAAAATCAAAAGAAAA
***
32604775 GAAAAGATTTAAAATCAAAAGAAAA
1 GAAAAGACCAAAAATCAAAAGAAAA
32604800 GAAAAGA
1 GAAAAGA
32604807 TTTAGGCATT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.70, C:0.07, G:0.12, T:0.11
Consensus pattern (25 bp):
GAAAAGACCAAAAATCAAAAGAAAA
Found at i:32604807 original size:25 final size:25
Alignment explanation
Indices: 32604760--32604810 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
32604750 GAAAATACCA
32604760 AAAATCAAAAGAAAAGAAAAGATTT
1 AAAATCAAAAGAAAAGAAAAGATTT
32604785 AAAATCAAAAGAAAAGAAAAGATTT
1 AAAATCAAAAGAAAAGAAAAGATTT
32604810 A
1 A
32604811 GGCATTCGAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.69, C:0.04, G:0.12, T:0.16
Consensus pattern (25 bp):
AAAATCAAAAGAAAAGAAAAGATTT
Found at i:32607796 original size:26 final size:25
Alignment explanation
Indices: 32607760--32607869 Score: 157
Period size: 26 Copynumber: 4.2 Consensus size: 25
32607750 TGATACAAAT
32607760 TGATAATAGGTTAGGTAAATGTTCAA
1 TGATAATAGGTTAGGTAAATGTTC-A
32607786 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTT-CA
*
32607812 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATG-TTCA
*
32607838 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATG-TTCA
*
32607864 TTATAA
1 TGATAA
32607870 GAATTTCATG
Statistics
Matches: 80, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
26 77 0.96
27 3 0.04
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.37
Consensus pattern (25 bp):
TGATAATAGGTTAGGTAAATGTTCA
Found at i:32620878 original size:55 final size:54
Alignment explanation
Indices: 32620800--32621054 Score: 271
Period size: 55 Copynumber: 4.8 Consensus size: 54
32620790 ATTAGGGTTT
32620800 AAGGATACCATGTAAGACCATGTCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGGCATGGCAATTGGTAA-GTTTCTAAGGC
* * * *
32620855 AAGGAAATCATGTAAGACCATGTCAAGAG-ATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAG-GCATGGCAATTGGTAAGTT--TCTAAGGC
* * *
32620910 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCGTAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGGCATGGCAATTGGTAAGTTTC-TAAGGC
* *
32620963 AAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC----GA
1 AAGGATACCATGTAAGACCATGTCAAGGCATGGCAATTGGTAAGTTTCTAAGGC
* **
32621012 AAGGATACCATGTAAGACCATGGCAAATCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGTCAAGGCATGGCAATTGGTAAG
32621055 GGACCCGCGT
Statistics
Matches: 172, Mismatches: 19, Indels: 24
0.80 0.09 0.11
Matches are distributed among these distances:
49 41 0.24
52 5 0.03
53 41 0.24
54 13 0.08
55 67 0.39
56 5 0.03
ACGTcount: A:0.35, C:0.16, G:0.26, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGGCATGGCAATTGGTAAGTTTCTAAGGC
Found at i:32621006 original size:108 final size:110
Alignment explanation
Indices: 32620807--32621007 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
32620797 TTTAAGGATA
* *
32620807 CCATGTAAGACCATGTCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
* *
32620872 CCATGTCAAGAGATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* *
32620917 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCGTAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
32620979 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
32621008 TCGAAAGGAT
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.57
109 7 0.08
110 26 0.31
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:32621244 original size:16 final size:16
Alignment explanation
Indices: 32621223--32621253 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32621213 ATAAATTTGA
32621223 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
32621239 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
32621254 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:32628531 original size:53 final size:52
Alignment explanation
Indices: 32628357--32628588 Score: 222
Period size: 55 Copynumber: 4.4 Consensus size: 52
32628347 CATTAGGGTT
*
32628357 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-G-TTCTAAGGC
* * * * * * **
32628412 AAGGAAATCATGTAAGACCATGTCAATAAATGCCATTAATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C--TAAGGC
* * *
32628467 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTC-TAAGGC
* *
32628520 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT-TCAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCT-AAGGC
32628569 AAGGATACCATGTAAGACCA
1 AAGGATACCATGTAAGACCA
32628589 CGAAAAGTCA
Statistics
Matches: 146, Mismatches: 25, Indels: 18
0.77 0.13 0.10
Matches are distributed among these distances:
49 20 0.14
51 1 0.01
52 8 0.05
53 44 0.30
54 7 0.05
55 62 0.42
56 4 0.03
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.22
Consensus pattern (52 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTAAGGC
Found at i:32633432 original size:14 final size:15
Alignment explanation
Indices: 32633399--32633432 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
32633389 AGAAATCGCA
32633399 GAAAATAAATTTTGG
1 GAAAATAAATTTTGG
*
32633414 GAAAATACATTTT-G
1 GAAAATAAATTTTGG
32633428 GAAAA
1 GAAAA
32633433 CACGATTGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.33
15 12 0.67
ACGTcount: A:0.50, C:0.03, G:0.18, T:0.29
Consensus pattern (15 bp):
GAAAATAAATTTTGG
Found at i:32635043 original size:25 final size:25
Alignment explanation
Indices: 32635012--32635108 Score: 95
Period size: 25 Copynumber: 3.9 Consensus size: 25
32635002 ACGTTTCGAC
**
32635012 CTACAACTCGTGTGAGCATACTGAT
1 CTACAACTCGTGTGAGCATACCAAT
* * ** *
32635037 TTACAACTTGTCAGATCATACCAAT
1 CTACAACTCGTGTGAGCATACCAAT
* **
32635062 CTACAGCTCAAGTGAGCATACCAAT
1 CTACAACTCGTGTGAGCATACCAAT
*
32635087 CTACAACTCGAGTGAGCATACC
1 CTACAACTCGTGTGAGCATACC
32635109 GATTCACAGC
Statistics
Matches: 55, Mismatches: 17, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
25 55 1.00
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (25 bp):
CTACAACTCGTGTGAGCATACCAAT
Found at i:32635121 original size:25 final size:25
Alignment explanation
Indices: 32635053--32635121 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
32635043 CTTGTCAGAT
*
32635053 CATACCAATCTACAGCTCAAGTGAG
1 CATACCAATCTACAGCTCGAGTGAG
*
32635078 CATACCAATCTACAACTCGAGTGAG
1 CATACCAATCTACAGCTCGAGTGAG
*
32635103 CATACCGAT-TCACAGCTCG
1 CATACCAATCT-ACAGCTCG
32635122 TATGGGCATA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
24 1 0.03
25 38 0.97
ACGTcount: A:0.33, C:0.30, G:0.16, T:0.20
Consensus pattern (25 bp):
CATACCAATCTACAGCTCGAGTGAG
Found at i:32635332 original size:13 final size:13
Alignment explanation
Indices: 32635314--32635360 Score: 53
Period size: 13 Copynumber: 3.6 Consensus size: 13
32635304 ACATAGTATA
32635314 TGGATGATTGAAT
1 TGGATGATTGAAT
32635327 TGGATGA-T-ACAT
1 TGGATGATTGA-AT
*
32635339 ATGGATAATTGAAT
1 -TGGATGATTGAAT
32635353 TGGATGAT
1 TGGATGAT
32635361 ACATGTATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
11 1 0.04
12 3 0.11
13 20 0.71
14 3 0.11
15 1 0.04
ACGTcount: A:0.34, C:0.02, G:0.28, T:0.36
Consensus pattern (13 bp):
TGGATGATTGAAT
Found at i:32635349 original size:26 final size:26
Alignment explanation
Indices: 32635311--32635364 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
32635301 GTTACATAGT
*
32635311 ATATGGATGATTGAATTGGATGATAC
1 ATATGGATAATTGAATTGGATGATAC
32635337 ATATGGATAATTGAATTGGATGATAC
1 ATATGGATAATTGAATTGGATGATAC
32635363 AT
1 AT
32635365 GTATATGAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.37, C:0.04, G:0.24, T:0.35
Consensus pattern (26 bp):
ATATGGATAATTGAATTGGATGATAC
Found at i:32638438 original size:35 final size:35
Alignment explanation
Indices: 32638396--32638469 Score: 148
Period size: 35 Copynumber: 2.1 Consensus size: 35
32638386 AAAAAGGGTT
32638396 AGAATCGAGATTGAATTGAAGGATTGCCTAATTAG
1 AGAATCGAGATTGAATTGAAGGATTGCCTAATTAG
32638431 AGAATCGAGATTGAATTGAAGGATTGCCTAATTAG
1 AGAATCGAGATTGAATTGAAGGATTGCCTAATTAG
32638466 AGAA
1 AGAA
32638470 AGAGGTAGTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.39, C:0.08, G:0.26, T:0.27
Consensus pattern (35 bp):
AGAATCGAGATTGAATTGAAGGATTGCCTAATTAG
Found at i:32639386 original size:16 final size:16
Alignment explanation
Indices: 32639362--32639398 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
32639352 TTTAAAAAGG
*
32639362 AAAACAAATGAATCTT
1 AAAAAAAATGAATCTT
*
32639378 AAAAAAAATGAGTCTT
1 AAAAAAAATGAATCTT
32639394 AAAAA
1 AAAAA
32639399 CTTAATGAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.62, C:0.08, G:0.08, T:0.22
Consensus pattern (16 bp):
AAAAAAAATGAATCTT
Found at i:32653989 original size:40 final size:41
Alignment explanation
Indices: 32653841--32654032 Score: 221
Period size: 40 Copynumber: 4.8 Consensus size: 41
32653831 CATTTGAATG
* * *
32653841 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * * *
32653881 TTATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTT-ATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* *
32653921 TTATCCGGGCTAAGATCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* *
32653961 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * * *
32654001 ATACCCAGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
32654033 TTGTGGTTAT
Statistics
Matches: 136, Mismatches: 13, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
40 134 0.99
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
Found at i:32659398 original size:27 final size:27
Alignment explanation
Indices: 32659367--32659544 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
32659357 TAAATTGTAC
32659367 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
32659394 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32659420 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
32659448 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
32659476 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
32659503 AGCAATAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
32659530 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
32659545 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:32659512 original size:82 final size:81
Alignment explanation
Indices: 32659368--32659523 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
32659358 AAATTGTACA
* * *
32659368 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCAATAAGTGT
32659433 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
** *
32659449 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCAATAAGT
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCAATAAGT
*
32659513 GTGCGAGTTGA
64 GTGCGAATTGA
32659524 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCAATAAGTGT
GCGAATTGACCATGCG
Found at i:32659535 original size:82 final size:81
Alignment explanation
Indices: 32659364--32659544 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
32659354 GATTAAATTG
* * *
32659364 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCAATAA
32659429 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
32659445 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCAAT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCAAT
* **
32659509 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
32659527 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
32659545 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCAATAA
GTGTGCGAATTGACCA
Found at i:32667446 original size:27 final size:27
Alignment explanation
Indices: 32667415--32667592 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
32667405 TAAATTGTAC
32667415 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
32667442 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32667468 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
32667496 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
32667524 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32667551 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
32667578 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
32667593 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:32667529 original size:82 final size:81
Alignment explanation
Indices: 32667416--32667571 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
32667406 AAATTGTACA
* *
32667416 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
32667480 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
32667497 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
32667562 TGCGAGTTGA
65 TGCGAATTGA
32667572 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:32667583 original size:82 final size:81
Alignment explanation
Indices: 32667412--32667592 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
32667402 GATTAAATTG
* *
32667412 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
32667477 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
32667493 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
32667557 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
32667575 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
32667593 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:32672635 original size:28 final size:29
Alignment explanation
Indices: 32672603--32672701 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
32672593 ATAATAAGCC
*
32672603 CGCACACTTAGTGCTTA-ATAGTCAAACT
1 CGCACACTTAGTGCTTATATAATCAAACT
*
32672631 CGCACACTTAGTGC-TATATAATCAACCT
1 CGCACACTTAGTGCTTATATAATCAAACT
* ** *
32672659 CGCACACTTAGTGC-TATACAATTTGAACC
1 CGCACACTTAGTGCTTATATAA-TCAAACT
32672688 CGCACACTTAGTGC
1 CGCACACTTAGTGC
32672702 CAATCTCATG
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
27 2 0.03
28 43 0.69
29 17 0.27
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTATATAATCAAACT
Found at i:32673166 original size:12 final size:12
Alignment explanation
Indices: 32673149--32673174 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
32673139 TGGGCATAGT
32673149 TATGTATATATA
1 TATGTATATATA
32673161 TATGTATATATA
1 TATGTATATATA
32673173 TA
1 TA
32673175 CTTCGGAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (12 bp):
TATGTATATATA
Found at i:32683539 original size:50 final size:49
Alignment explanation
Indices: 32683462--32683729 Score: 160
Period size: 46 Copynumber: 5.7 Consensus size: 49
32683452 CATGGGTAAG
* *
32683462 GTGCCGATACCATGTC-CAGACATGGTCTTACACTGGCTTTCACATATC
1 GTGCCGATGCCATGTCTCAGACATGGTCTTACACTGGCTTACACATATC
* * *
32683510 TGTGCCAATGCCATGTCTCAGACATGGTCTTACA-T---TGACACATCTC
1 -GTGCCGATGCCATGTCTCAGACATGGTCTTACACTGGCTTACACATATC
** *
32683556 GTAGCCGATG-CATGTCTCAGACAT-GTCTTACACTGGCTT--ATGTCTC
1 GT-GCCGATGCCATGTCTCAGACATGGTCTTACACTGGCTTACACATATC
* * * * * *
32683602 GAGGCCGATG-CATGTC-CTAGACAT-ATCTTACACTAGC-T-CTCGTCTC
1 G-TGCCGATGCCATGTCTC-AGACATGGTCTTACACTGGCTTACACATATC
* * * *
32683648 AATGCCGATGCCATGTCCCGGACATGGTCTTACACTGGC-T-CTCATAAT-
1 -GTGCCGATGCCATGTCTCAGACATGGTCTTACACTGGCTTACACAT-ATC
* *
32683696 GTGGCCGATG-CATGTCCCAAACAT-GTCTTACACT
1 GT-GCCGATGCCATGTCTCAGACATGGTCTTACACT
32683730 AGCTCACATG
Statistics
Matches: 180, Mismatches: 24, Indels: 33
0.76 0.10 0.14
Matches are distributed among these distances:
44 8 0.04
45 19 0.11
46 72 0.40
47 24 0.13
48 25 0.14
49 16 0.09
50 16 0.09
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (49 bp):
GTGCCGATGCCATGTCTCAGACATGGTCTTACACTGGCTTACACATATC
Found at i:32683614 original size:46 final size:47
Alignment explanation
Indices: 32683559--32683734 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 47
32683549 ACATCTCGTA
* *
32683559 GCCGATGCATGTCTCAGACATGTCTTACACTGGCT-TATGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTACGTCTCGAG
* * * * *
32683605 GCCGATGCATGTCCTAGACATATCTTACACTAGCTCT-CGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTACGTCTCGAG
* * * *
32683651 GCCGATGCCATGTCCCGGACATGGTCTTACACTGGCTCT-CATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTACGT-CTCGAG
* *
32683699 GCCGATGCATGTCCCAAACATGTCTTACACTAGCTC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTC
32683735 ACATGCATGA
Statistics
Matches: 107, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
46 58 0.54
47 25 0.23
48 23 0.21
49 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTACGTCTCGAG
Found at i:32683678 original size:94 final size:92
Alignment explanation
Indices: 32683559--32683734 Score: 230
Period size: 94 Copynumber: 1.9 Consensus size: 92
32683549 ACATCTCGTA
* ** * *
32683559 GCCGATGCATGTCTCAGACATGTCTTACACTGGCT-T-ATGTCTCGAGGCCGATGCATGTCCTAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCAT-AAT-GAGGCCGATGCATGTCCCAA
32683622 ACATATCTTACACTAGCTCTCGTCTCAAT
64 ACATATCTTACACTAGCTCTCGTCTCAAT
* *
32683651 GCCGATGCCATGTCCCGGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATAATGAGGCCGATGCATGTCCCAA
*
32683716 ACATGTCTTACACTAGCTC
64 ACATATCTTACACTAGCTC
32683735 ACATGCATGA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
92 7 0.10
93 12 0.17
94 49 0.68
95 2 0.03
96 2 0.03
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (92 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAATGAGGCCGATGCATGTCCCAAAC
ATATCTTACACTAGCTCTCGTCTCAAT
Found at i:32687046 original size:86 final size:85
Alignment explanation
Indices: 32686902--32687061 Score: 214
Period size: 86 Copynumber: 1.9 Consensus size: 85
32686892 GACAAGTACA
* * * *
32686902 ATGCCGACGTCCCAGACGTGGTCTTACATGTAATTCAGTATCGATGCCTCTATCCCAGACAGGAT
1 ATGCCGACGTCCCAGACATGGTCTTACACGTAATTCAGAATCGATGCCTCTATCCCAGACACGAT
*
32686967 CTTATACGAAAACAGATACG
66 CTTACACGAAAACAGATACG
* * * *
32686987 ATGCCGATGTCCTAGACATGGTCTTACACGTAAATTTCA-AATCGATGCCTGTGTCCCAGACACG
1 ATGCCGACGTCCCAGACATGGTCTTACACGT-AA-TTCAGAATCGATGCCTCTATCCCAGACACG
32687051 ATCTTACACGA
64 ATCTTACACGA
32687062 TAATTCAGAT
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
85 27 0.42
86 33 0.52
87 4 0.06
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (85 bp):
ATGCCGACGTCCCAGACATGGTCTTACACGTAATTCAGAATCGATGCCTCTATCCCAGACACGAT
CTTACACGAAAACAGATACG
Found at i:32691602 original size:30 final size:31
Alignment explanation
Indices: 32691535--32691608 Score: 132
Period size: 31 Copynumber: 2.4 Consensus size: 31
32691525 ACGGTTACTG
32691535 GGCCGAAGCCTTTTCATAAATCATATCACTA
1 GGCCGAAGCCTTTTCATAAATCATATCACTA
*
32691566 GGCCGAAGCCTTTTCCTAAATCATATCACT-
1 GGCCGAAGCCTTTTCATAAATCATATCACTA
32691596 GGCCGAAGCCTTT
1 GGCCGAAGCCTTT
32691609 ACTATAAGCG
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
30 13 0.31
31 29 0.69
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.28
Consensus pattern (31 bp):
GGCCGAAGCCTTTTCATAAATCATATCACTA
Found at i:32691848 original size:24 final size:25
Alignment explanation
Indices: 32691821--32691872 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
32691811 GCCTAGCCGC
32691821 TTTTAAT-AACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
*
32691845 TTTTGATAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
32691870 TTT
1 TTT
32691873 CGGTAAACTG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 6 0.23
25 20 0.77
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (25 bp):
TTTTAATAAACTGGGGCAAAGCCCT
Found at i:32691897 original size:25 final size:25
Alignment explanation
Indices: 32691828--32691885 Score: 98
Period size: 25 Copynumber: 2.3 Consensus size: 25
32691818 CGCTTTTAAT
*
32691828 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
32691853 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
32691878 AACTGGGG
1 AACTGGGG
32691886 ATTAGCCCTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:32692855 original size:27 final size:27
Alignment explanation
Indices: 32692825--32692909 Score: 77
Period size: 27 Copynumber: 3.1 Consensus size: 27
32692815 GTAAATCTAC
32692825 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
* *
32692852 AAACCAATGGTATTTCTA-AAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* *
32692878 AGAAAGTCAAGGGTATTT-TGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
32692907 AAA
1 AAA
32692910 TTAGGGGTAG
Statistics
Matches: 46, Mismatches: 6, Indels: 12
0.72 0.09 0.19
Matches are distributed among these distances:
26 1 0.02
27 24 0.52
28 10 0.22
29 11 0.24
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.39
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:32692927 original size:27 final size:26
Alignment explanation
Indices: 32692888--32693009 Score: 129
Period size: 27 Copynumber: 4.6 Consensus size: 26
32692878 AGAAAGTCAA
* ** *
32692888 GGGTATTTTGTAATTTTGTAAATTAG
1 GGGTATTTGGTAATTTTACAAACTAG
*
32692914 GGGTAGTTTGGTAATTTTACAAA-TCG
1 GGGTA-TTTGGTAATTTTACAAACTAG
*
32692940 AGGGTATTTCGGTAATTTCACAAACTAG
1 -GGGTATTT-GGTAATTTTACAAACTAG
* *
32692968 TGGTATTTTGGTAATTTTATAAACTAG
1 GGGTA-TTTGGTAATTTTACAAACTAG
32692995 GGGTATTTGGTAATT
1 GGGTATTTGGTAATT
32693010 CTACCCTAAG
Statistics
Matches: 81, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
26 20 0.25
27 56 0.69
28 5 0.06
ACGTcount: A:0.28, C:0.06, G:0.24, T:0.43
Consensus pattern (26 bp):
GGGTATTTGGTAATTTTACAAACTAG
Found at i:32692978 original size:54 final size:52
Alignment explanation
Indices: 32692915--32693050 Score: 136
Period size: 54 Copynumber: 2.6 Consensus size: 52
32692905 GTAAATTAGG
* *
32692915 GGTAGTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAATT-TCACAAACT-AGT
1 GGTATTTTGGTAATTTTACAAATCGAGGGTATTT-GGTAATTCT-AC--ACTAAGA
* * *
32692969 GGTATTTTGGTAATTTTATAAA-CTAGGGGTATTTGGTAATTCTACCCTAAGA
1 GGTATTTTGGTAATTTTACAAATCGA-GGGTATTTGGTAATTCTACACTAAGA
* *
32693021 GGTATTTTAGTAATTTCAC-AATCGAGGGTA
1 GGTATTTTGGTAATTTTACAAATCGAGGGTA
32693051 AAACGATAAT
Statistics
Matches: 69, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
51 9 0.13
52 20 0.29
53 11 0.16
54 29 0.42
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.38
Consensus pattern (52 bp):
GGTATTTTGGTAATTTTACAAATCGAGGGTATTTGGTAATTCTACACTAAGA
Found at i:32693050 original size:26 final size:26
Alignment explanation
Indices: 32692914--32693050 Score: 109
Period size: 27 Copynumber: 5.2 Consensus size: 26
32692904 TGTAAATTAG
* *
32692914 GGGTAGTTTGGTAATTTTACAAATCGA
1 GGGTATTTTGGTAATTTCACAAA-CGA
* *
32692941 GGGTATTTCGGTAATTTCACAAACTA
1 GGGTATTTTGGTAATTTCACAAACGA
* * *
32692967 GTGGTATTTTGGTAATTTTATAAACTA
1 G-GGTATTTTGGTAATTTCACAAACGA
* *
32692994 GGGGTA-TTTGGTAATTCTACCCTAA-GA
1 -GGGTATTTTGGTAATT-T-CACAAACGA
* *
32693021 -GGTATTTTAGTAATTTCACAATCGA
1 GGGTATTTTGGTAATTTCACAAACGA
32693046 GGGTA
1 GGGTA
32693051 AAACGATAAT
Statistics
Matches: 87, Mismatches: 16, Indels: 15
0.74 0.14 0.13
Matches are distributed among these distances:
24 3 0.03
25 7 0.08
26 26 0.30
27 48 0.55
28 3 0.03
ACGTcount: A:0.29, C:0.10, G:0.23, T:0.38
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTCACAAACGA
Found at i:32693076 original size:27 final size:28
Alignment explanation
Indices: 32693040--32693131 Score: 109
Period size: 27 Copynumber: 3.4 Consensus size: 28
32693030 GTAATTTCAC
*
32693040 AATCGAGGGTAAAACGA-TAATTTTGTA
1 AATCGAGGGTAAAACGAGTAATTTTATA
* *
32693067 AATTGAGGGTAAAA-TAGTAATTTTATA
1 AATCGAGGGTAAAACGAGTAATTTTATA
* * *
32693094 AATCAAGGGTAAAAC-AGTGATTCTATA
1 AATCGAGGGTAAAACGAGTAATTTTATA
32693121 AATCGAGGGTA
1 AATCGAGGGTA
32693132 CTTGGGTAAT
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
26 1 0.02
27 54 0.98
ACGTcount: A:0.42, C:0.07, G:0.22, T:0.29
Consensus pattern (28 bp):
AATCGAGGGTAAAACGAGTAATTTTATA
Found at i:32694606 original size:10 final size:10
Alignment explanation
Indices: 32694591--32694615 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
32694581 CCCAATTTTG
32694591 AAAAAAGAAA
1 AAAAAAGAAA
32694601 AAAAAAGAAA
1 AAAAAAGAAA
32694611 AAAAA
1 AAAAA
32694616 TAAAAAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (10 bp):
AAAAAAGAAA
Found at i:32695484 original size:30 final size:31
Alignment explanation
Indices: 32695417--32695490 Score: 132
Period size: 31 Copynumber: 2.4 Consensus size: 31
32695407 ACGGTTACTG
32695417 GGCCGAAGCCTTTTCATAAATCATATCACTA
1 GGCCGAAGCCTTTTCATAAATCATATCACTA
*
32695448 GGCCGAAGCCTTTTCCTAAATCATATCACT-
1 GGCCGAAGCCTTTTCATAAATCATATCACTA
32695478 GGCCGAAGCCTTT
1 GGCCGAAGCCTTT
32695491 ACTATAAGCG
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
30 13 0.31
31 29 0.69
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.28
Consensus pattern (31 bp):
GGCCGAAGCCTTTTCATAAATCATATCACTA
Found at i:32695730 original size:24 final size:25
Alignment explanation
Indices: 32695703--32695754 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
32695693 GCCTAGCCGC
32695703 TTTTAAT-AACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
*
32695727 TTTTGATAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
32695752 TTT
1 TTT
32695755 CGGTAAACTG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 6 0.23
25 20 0.77
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (25 bp):
TTTTAATAAACTGGGGCAAAGCCCT
Found at i:32695779 original size:25 final size:25
Alignment explanation
Indices: 32695710--32695767 Score: 98
Period size: 25 Copynumber: 2.3 Consensus size: 25
32695700 CGCTTTTAAT
*
32695710 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
32695735 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
32695760 AACTGGGG
1 AACTGGGG
32695768 ATTAGCCCTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:32696619 original size:27 final size:27
Alignment explanation
Indices: 32696589--32696653 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
32696579 GGGCATATTC
32696589 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
32696616 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
* *
32696643 GACTTTTTACC
1 GTCATTTTACC
32696654 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:32696737 original size:27 final size:27
Alignment explanation
Indices: 32696707--32696791 Score: 77
Period size: 27 Copynumber: 3.1 Consensus size: 27
32696697 GTAAATCTAC
32696707 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
* *
32696734 AAACCAATGGTATTTCTA-AAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* *
32696760 AGAAAGTCAAGGGTATTT-TGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
32696789 AAA
1 AAA
32696792 TTAGGGGTAG
Statistics
Matches: 46, Mismatches: 6, Indels: 12
0.72 0.09 0.19
Matches are distributed among these distances:
26 1 0.02
27 24 0.52
28 10 0.22
29 11 0.24
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.39
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:32696809 original size:27 final size:26
Alignment explanation
Indices: 32696770--32696892 Score: 122
Period size: 27 Copynumber: 4.6 Consensus size: 26
32696760 AGAAAGTCAA
* ** *
32696770 GGGTATTTTGTAATTTTGTAAATTAG
1 GGGTATTTGGTAATTTTACAAACTAG
*
32696796 GGGTAGTTTGGTAATTTTACAAA-TCG
1 GGGTA-TTTGGTAATTTTACAAACTAG
*
32696822 AGGGTATTTCGGTAATTTCACAAACTAG
1 -GGGTATTT-GGTAATTTTACAAACTAG
* *
32696850 TGGTATTTTGGTAATTTTATAAACTAG
1 GGGTA-TTTGGTAATTTTACAAACTAG
32696877 GGGTATTTTGGTAATT
1 GGGTA-TTTGGTAATT
32696893 CTACCCTAAG
Statistics
Matches: 82, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
26 10 0.12
27 67 0.82
28 5 0.06
ACGTcount: A:0.28, C:0.06, G:0.24, T:0.43
Consensus pattern (26 bp):
GGGTATTTGGTAATTTTACAAACTAG
Found at i:32696958 original size:27 final size:28
Alignment explanation
Indices: 32696922--32697013 Score: 109
Period size: 27 Copynumber: 3.4 Consensus size: 28
32696912 GTAATTTCAC
*
32696922 AATCGAGGGTAAAACGA-TAATTTTGTA
1 AATCGAGGGTAAAACGAGTAATTTTATA
* *
32696949 AATTGAGGGTAAAA-TAGTAATTTTATA
1 AATCGAGGGTAAAACGAGTAATTTTATA
* * *
32696976 AATCAAGGGTAAAAC-AGTGATTCTATA
1 AATCGAGGGTAAAACGAGTAATTTTATA
32697003 AATCGAGGGTA
1 AATCGAGGGTA
32697014 CTTGGGTAAT
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
26 1 0.02
27 54 0.98
ACGTcount: A:0.42, C:0.07, G:0.22, T:0.29
Consensus pattern (28 bp):
AATCGAGGGTAAAACGAGTAATTTTATA
Found at i:32698488 original size:8 final size:8
Alignment explanation
Indices: 32698475--32698500 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
32698465 CAATTTTGAA
32698475 AAAAAAAT
1 AAAAAAAT
32698483 AAAAAAAT
1 AAAAAAAT
32698491 AAAAAAAT
1 AAAAAAAT
32698499 AA
1 AA
32698501 CAATAATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AAAAAAAT
Found at i:32699358 original size:30 final size:31
Alignment explanation
Indices: 32699291--32699364 Score: 132
Period size: 31 Copynumber: 2.4 Consensus size: 31
32699281 ACGGTTACTG
32699291 GGCCGAAGCCTTTTCATAAATCATATCACTA
1 GGCCGAAGCCTTTTCATAAATCATATCACTA
*
32699322 GGCCGAAGCCTTTTCCTAAATCATATCACT-
1 GGCCGAAGCCTTTTCATAAATCATATCACTA
32699352 GGCCGAAGCCTTT
1 GGCCGAAGCCTTT
32699365 ACTATAAGCG
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
30 13 0.31
31 29 0.69
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.28
Consensus pattern (31 bp):
GGCCGAAGCCTTTTCATAAATCATATCACTA
Found at i:32699604 original size:24 final size:25
Alignment explanation
Indices: 32699577--32699628 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
32699567 GCCTAGCCGC
32699577 TTTTAAT-AACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
*
32699601 TTTTGATAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
32699626 TTT
1 TTT
32699629 CGGTAAACTG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 6 0.23
25 20 0.77
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (25 bp):
TTTTAATAAACTGGGGCAAAGCCCT
Found at i:32699653 original size:25 final size:25
Alignment explanation
Indices: 32699584--32699641 Score: 98
Period size: 25 Copynumber: 2.3 Consensus size: 25
32699574 CGCTTTTAAT
*
32699584 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
32699609 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
32699634 AACTGGGG
1 AACTGGGG
32699642 ATTAGCCCTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:32700611 original size:27 final size:27
Alignment explanation
Indices: 32700581--32700665 Score: 86
Period size: 27 Copynumber: 3.1 Consensus size: 27
32700571 GTAAATCTAC
32700581 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
* *
32700608 AAACCAATGGTATTTCTA-AAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
*
32700634 AGAGAGCCAAGGGTATTT-TGTAATTTTGT
1 A-A-A-CCAAGGGTATTTCAGTAATTTTGT
32700663 AAA
1 AAA
32700666 TTAGGGGTAG
Statistics
Matches: 47, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
26 2 0.04
27 23 0.49
28 9 0.19
29 13 0.28
ACGTcount: A:0.35, C:0.09, G:0.18, T:0.38
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:32700692 original size:26 final size:27
Alignment explanation
Indices: 32700644--32700765 Score: 133
Period size: 27 Copynumber: 4.6 Consensus size: 27
32700634 AGAGAGCCAA
** *
32700644 GGGTATTTT-GTAATTTTGTAAATTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
32700670 GGGTAGTTT-GTAATTTTACAAA-TCG
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
32700695 AGGGTATTTCGGTAATTTCACAAACTAG
1 -GGGTATTTTGGTAATTTTACAAACTAG
* *
32700723 TGGTATTTTGGTAATTTTATAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
32700750 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
32700766 CTACCCTAAG
Statistics
Matches: 80, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
25 2 0.03
26 26 0.32
27 50 0.62
28 2 0.03
ACGTcount: A:0.28, C:0.06, G:0.23, T:0.43
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:32700781 original size:80 final size:78
Alignment explanation
Indices: 32700645--32700797 Score: 184
Period size: 80 Copynumber: 1.9 Consensus size: 78
32700635 GAGAGCCAAG
* * * *
32700645 GGTATTTTGTAATTTTGTAAATTAGGGGTAGTTTGTAATTTTACAAATCGAGGGTATTTCGGTAA
1 GGTATTTTGTAATTTTATAAACTAGGGGTAGTTTGTAATTCTACAAA-CGAGGGTATTTCAGTAA
32700710 TTTCACAAACTAGT
65 TTTCACAAACTAGT
* * *
32700724 GGTATTTTGGTAATTTTATAAACTAGGGGTATTTTGGTAATTCTACCCTAA-GA-GGTATTTTAG
1 GGTATTTT-GTAATTTTATAAACTAGGGGTAGTTT-GTAATTCTA--CAAACGAGGGTATTTCAG
32700787 TAATTTCACAA
62 TAATTTCACAA
32700798 CCGAGGGTAA
Statistics
Matches: 63, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
79 8 0.13
80 42 0.67
81 10 0.16
83 3 0.05
ACGTcount: A:0.29, C:0.08, G:0.20, T:0.42
Consensus pattern (78 bp):
GGTATTTTGTAATTTTATAAACTAGGGGTAGTTTGTAATTCTACAAACGAGGGTATTTCAGTAAT
TTCACAAACTAGT
Found at i:32700806 original size:26 final size:26
Alignment explanation
Indices: 32700670--32700806 Score: 109
Period size: 27 Copynumber: 5.2 Consensus size: 26
32700660 TGTAAATTAG
* *
32700670 GGGTAGTTT-GTAATTTTACAAATCGA
1 GGGTATTTTGGTAATTTCACAAA-CGA
* *
32700696 GGGTATTTCGGTAATTTCACAAACTA
1 GGGTATTTTGGTAATTTCACAAACGA
* * *
32700722 GTGGTATTTTGGTAATTTTATAAACTA
1 G-GGTATTTTGGTAATTTCACAAACGA
* *
32700749 GGGGTATTTTGGTAATTCTACCCTAA-GA
1 -GGGTATTTTGGTAATT-T-CACAAACGA
* *
32700777 -GGTATTTTAGTAATTTCACAACCGA
1 GGGTATTTTGGTAATTTCACAAACGA
32700802 GGGTA
1 GGGTA
32700807 AAACGATAAT
Statistics
Matches: 88, Mismatches: 16, Indels: 14
0.75 0.14 0.12
Matches are distributed among these distances:
24 3 0.03
25 3 0.03
26 28 0.32
27 49 0.56
28 3 0.03
29 2 0.02
ACGTcount: A:0.29, C:0.11, G:0.22, T:0.38
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTCACAAACGA
Found at i:32700832 original size:27 final size:28
Alignment explanation
Indices: 32700799--32700887 Score: 103
Period size: 27 Copynumber: 3.3 Consensus size: 28
32700789 ATTTCACAAC
*
32700799 CGAGGGTAAAACGA-TAATTTTGTAAAT
1 CGAGGGTAAAACGAGTAATTTTATAAAT
* *
32700826 TGAGGGTAAAA-TAGTAATTTTATAAAT
1 CGAGGGTAAAACGAGTAATTTTATAAAT
* * *
32700853 CAAGGGTAAAAC-AGTGATTCTATAAAT
1 CGAGGGTAAAACGAGTAATTTTATAAAT
32700880 CGAGGGTA
1 CGAGGGTA
32700888 CTTGGGTAAT
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
26 1 0.02
27 51 0.98
ACGTcount: A:0.42, C:0.07, G:0.22, T:0.29
Consensus pattern (28 bp):
CGAGGGTAAAACGAGTAATTTTATAAAT
Found at i:32703230 original size:30 final size:31
Alignment explanation
Indices: 32703163--32703236 Score: 132
Period size: 31 Copynumber: 2.4 Consensus size: 31
32703153 ACGGTTACTG
32703163 GGCCGAAGCCTTTTCATAAATCATATCACTA
1 GGCCGAAGCCTTTTCATAAATCATATCACTA
*
32703194 GGCCGAAGCCTTTTCCTAAATCATATCACT-
1 GGCCGAAGCCTTTTCATAAATCATATCACTA
32703224 GGCCGAAGCCTTT
1 GGCCGAAGCCTTT
32703237 ACTATAAGCG
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
30 13 0.31
31 29 0.69
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.28
Consensus pattern (31 bp):
GGCCGAAGCCTTTTCATAAATCATATCACTA
Found at i:32703476 original size:24 final size:25
Alignment explanation
Indices: 32703449--32703500 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
32703439 GCCTAGCCGC
32703449 TTTTAAT-AACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
*
32703473 TTTTGATAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
32703498 TTT
1 TTT
32703501 CGGTAAACTG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 6 0.23
25 20 0.77
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (25 bp):
TTTTAATAAACTGGGGCAAAGCCCT
Found at i:32703525 original size:25 final size:25
Alignment explanation
Indices: 32703456--32703513 Score: 98
Period size: 25 Copynumber: 2.3 Consensus size: 25
32703446 CGCTTTTAAT
*
32703456 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
32703481 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
32703506 AACTGGGG
1 AACTGGGG
32703514 ATTAGCCCTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:32704397 original size:27 final size:27
Alignment explanation
Indices: 32704335--32704412 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
32704325 GGGCATATTC
32704335 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
32704362 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
* *
32704389 GTCTTTTTACC-TATTAGGGGTATT
1 GTCATTTTACCATA-CAGGGGTATT
32704413 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 3 0.07
27 39 0.91
28 1 0.02
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:32704567 original size:28 final size:27
Alignment explanation
Indices: 32704516--32704640 Score: 126
Period size: 27 Copynumber: 4.6 Consensus size: 27
32704506 AGAAAGTCAA
* * * *
32704516 GGGTTTTTTTGTAATTTTGTAAATTAG
1 GGGTATTTTGGTAATTTTATAAACTAG
* *
32704543 GGGTATTTTTGGTAATTTTACAAA-TCG
1 GGGTA-TTTTGGTAATTTTATAAACTAG
* *
32704570 AGGGTATTTCGGTAATTTCATAAACTAG
1 -GGGTATTTTGGTAATTTTATAAACTAG
* * *
32704598 TGGTATTTTCGTAATTTTATAACCTAG
1 GGGTATTTTGGTAATTTTATAAACTAG
32704625 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
32704641 CTACCCTATA
Statistics
Matches: 79, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
27 57 0.72
28 22 0.28
ACGTcount: A:0.26, C:0.06, G:0.22, T:0.46
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACTAG
Found at i:32704603 original size:55 final size:55
Alignment explanation
Indices: 32704457--32704616 Score: 160
Period size: 56 Copynumber: 2.9 Consensus size: 55
32704447 ATCTACAAAC
* * * * *
32704457 CAAGGTTATTTCAGTAATTTTGTAAACCAATGGTATTTTTATAATTTTTAGAAAGT
1 CAAGGGTATTTCAGTAATTTTGTAAACTAGTGGTATTTTTGTAA-TTTTACAAAGT
* ** * *
32704513 CAAGGGTTTTTTTGTAATTTTGTAAATTAGGGGTATTTTTGGTAATTTTACAAA-T
1 CAAGGGTATTTCAGTAATTTTGTAAACTAGTGGTATTTTT-GTAATTTTACAAAGT
* * ** *
32704568 CGAGGGTATTTCGGTAATTTCATAAACTAGTGGTATTTTCGTAATTTTA
1 CAAGGGTATTTCAGTAATTTTGTAAACTAGTGGTATTTTTGTAATTTTA
32704617 TAACCTAGGG
Statistics
Matches: 84, Mismatches: 19, Indels: 4
0.79 0.18 0.04
Matches are distributed among these distances:
54 9 0.11
55 32 0.38
56 40 0.48
57 3 0.04
ACGTcount: A:0.29, C:0.07, G:0.18, T:0.46
Consensus pattern (55 bp):
CAAGGGTATTTCAGTAATTTTGTAAACTAGTGGTATTTTTGTAATTTTACAAAGT
Found at i:32704693 original size:26 final size:25
Alignment explanation
Indices: 32704661--32704763 Score: 98
Period size: 27 Copynumber: 3.8 Consensus size: 25
32704651 GAGTTATTTT
*
32704661 AGTAATTTTACAATTGAGGGTAAAAC
1 AGTAATTTTA-AATCGAGGGTAAAAC
* *
32704687 GGTAATTTTGTAAATCGAGGGTAAAAT
1 AGTAA-TTT-TAAATCGAGGGTAAAAC
*
32704714 AGTAATTTTGTAAATCAAGGGTAAAAC
1 AGTAA-TTT-TAAATCGAGGGTAAAAC
*
32704741 AGTGATTCTATAAATCGAGGGTA
1 AGTAATT-T-TAAATCGAGGGTA
32704764 CTTGTGTAAT
Statistics
Matches: 65, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
26 6 0.09
27 57 0.88
28 2 0.03
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.31
Consensus pattern (25 bp):
AGTAATTTTAAATCGAGGGTAAAAC
Found at i:32704710 original size:27 final size:27
Alignment explanation
Indices: 32704676--32704763 Score: 122
Period size: 27 Copynumber: 3.3 Consensus size: 27
32704666 TTTTACAATT
*
32704676 GAGGGTAAAACGGTAATTTTGTAAATC
1 GAGGGTAAAACAGTAATTTTGTAAATC
*
32704703 GAGGGTAAAATAGTAATTTTGTAAATC
1 GAGGGTAAAACAGTAATTTTGTAAATC
* * * *
32704730 AAGGGTAAAACAGTGATTCTATAAATC
1 GAGGGTAAAACAGTAATTTTGTAAATC
32704757 GAGGGTA
1 GAGGGTA
32704764 CTTGTGTAAT
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.40, C:0.07, G:0.25, T:0.28
Consensus pattern (27 bp):
GAGGGTAAAACAGTAATTTTGTAAATC
Found at i:32708259 original size:30 final size:30
Alignment explanation
Indices: 32708225--32708285 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
32708215 TCCTTAACTC
32708225 AAACTTTAGAAAAATTACAATTTTGCCCCT
1 AAACTTTAGAAAAATTACAATTTTGCCCCT
* * * * *
32708255 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTAGAAAAATTACAATTTTGCCCCT
32708285 A
1 A
32708286 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.38
Consensus pattern (30 bp):
AAACTTTAGAAAAATTACAATTTTGCCCCT
Found at i:32710219 original size:40 final size:40
Alignment explanation
Indices: 32710175--32710436 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
32710165 GCTCCTCGTT
* *
32710175 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
32710215 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
32710255 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
32710294 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
32710333 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
32710372 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
32710413 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
32710437 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:32718325 original size:39 final size:39
Alignment explanation
Indices: 32718204--32718402 Score: 276
Period size: 39 Copynumber: 5.1 Consensus size: 39
32718194 GCTCCTCGTT
* * *
32718204 CAAATGCCTTCGGGACATAGCCCGG-TTATAGCAAT-TCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAG-TATCTCGCA
* * * *
32718244 CAAATGGCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
*
32718284 CAAATGCCTTCGGGCTTAGCCAGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
32718323 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
32718362 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
32718401 CA
1 CA
32718403 CTTAATACAT
Statistics
Matches: 146, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 101 0.69
40 43 0.29
41 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:32723333 original size:26 final size:26
Alignment explanation
Indices: 32723304--32723354 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
32723294 AGCTCGGGCA
32723304 TTCGCATCCATAAGTGAACTCGGACG
1 TTCGCATCCATAAGTGAACTCGGACG
32723330 TTCGCATCCATAAGTGAACTCGGAC
1 TTCGCATCCATAAGTGAACTCGGAC
32723355 TCAACTCAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (26 bp):
TTCGCATCCATAAGTGAACTCGGACG
Found at i:32724711 original size:21 final size:20
Alignment explanation
Indices: 32724677--32724721 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 20
32724667 AAAACAGGGC
32724677 ACACGCTCTGTGGAAG-GTTA
1 ACACGCTCTGTGGAAGAG-TA
32724697 ACACGCTCGTGTGGAAGAGTA
1 ACACGCTC-TGTGGAAGAGTA
32724718 ACAC
1 ACAC
32724722 ACCCGTTTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 8 0.35
21 14 0.61
22 1 0.04
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (20 bp):
ACACGCTCTGTGGAAGAGTA
Found at i:32724929 original size:27 final size:27
Alignment explanation
Indices: 32724891--32724945 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
32724881 AAAAACTAAG
*
32724891 TGTGGGATCTATCCCATGCCAACACAT
1 TGTGGGATCTATCCCAAGCCAACACAT
32724918 TGTGGGATCTATCCCAAGCCAACACAT
1 TGTGGGATCTATCCCAAGCCAACACAT
32724945 T
1 T
32724946 TGGCCAAATC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (27 bp):
TGTGGGATCTATCCCAAGCCAACACAT
Found at i:32725544 original size:46 final size:46
Alignment explanation
Indices: 32725493--32725631 Score: 147
Period size: 46 Copynumber: 3.0 Consensus size: 46
32725483 TACATTGACA
*
32725493 CATCTCATAGCCGATGCACGTCCCAGACATGTCTTACACTAGCTCT
1 CATCTCATAGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT
* *
32725539 CATCTCA-ATGCCGATGCCATGTCCCAAACATGGTCTTACACTACCTCT
1 CATCTCATA-GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCT
* * * * * *
32725587 CATAAT-GTGGTCGATGCATGTCCCAGATATGTTTTACACTAGCTC
1 CAT-CTCATAGCCGATGCATGTCCCAGACATGTCTTACACTAGCTC
32725632 ACATGCATGA
Statistics
Matches: 77, Mismatches: 11, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
45 1 0.01
46 27 0.35
47 24 0.31
48 24 0.31
49 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.29
Consensus pattern (46 bp):
CATCTCATAGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT
Found at i:32725587 original size:48 final size:46
Alignment explanation
Indices: 32725493--32725589 Score: 133
Period size: 48 Copynumber: 2.1 Consensus size: 46
32725483 TACATTGACA
* *
32725493 CATCTCATAGCCGATGCACGTCCCAGACATGTCTTACACTAGCTCT
1 CATCTCATAGCCGATGCACGTCCCAAACATGTCTTACACTACCTCT
*
32725539 CATCTCA-ATGCCGATGCCATGTCCCAAACATGGTCTTACACTACCTCT
1 CATCTCATA-GCCGATG-CACGTCCCAAACAT-GTCTTACACTACCTCT
32725587 CAT
1 CAT
32725590 AATGTGGTCG
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
45 1 0.02
46 14 0.31
47 12 0.27
48 18 0.40
ACGTcount: A:0.25, C:0.35, G:0.13, T:0.27
Consensus pattern (46 bp):
CATCTCATAGCCGATGCACGTCCCAAACATGTCTTACACTACCTCT
Found at i:32725607 original size:47 final size:45
Alignment explanation
Indices: 32725502--32725627 Score: 121
Period size: 47 Copynumber: 2.7 Consensus size: 45
32725492 ACATCTCATA
* * *
32725502 GCCGATGCACGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAT
1 GCCGATGCATGTCCCAAACATGTCTTACACTACCTCTCA-CTCAAT
32725548 GCCGATGCCATGTCCCAAACATGGTCTTACACTACCTCTCA-T-AATGT
1 GCCGATG-CATGTCCCAAACAT-GTCTTACACTACCTCTCACTCAA--T
* * * *
32725595 GGTCGATGCATGTCCCAGATATGTTTTACACTA
1 -GCCGATGCATGTCCCAAACATGTCTTACACTA
32725628 GCTCACATGC
Statistics
Matches: 68, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
45 2 0.03
46 18 0.26
47 25 0.37
48 23 0.34
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.29
Consensus pattern (45 bp):
GCCGATGCATGTCCCAAACATGTCTTACACTACCTCTCACTCAAT
Found at i:32727781 original size:35 final size:35
Alignment explanation
Indices: 32727699--32727797 Score: 110
Period size: 35 Copynumber: 2.8 Consensus size: 35
32727689 TTATGAATAT
* * ***
32727699 TCTAATTAC-GATTCATATGTTAAGCATGCTATTGT
1 TCTAATT-CTGATTCACATGTTAAGCATGCCATAAA
* *
32727734 TCTACTTATGATTCACATGTTAAGCATGCCATAAA
1 TCTAATTCTGATTCACATGTTAAGCATGCCATAAA
*
32727769 TCTAATTCTGATTCGCATGTTAAGCATGC
1 TCTAATTCTGATTCACATGTTAAGCATGC
32727798 AACTGTGTTA
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
35 53 1.00
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.38
Consensus pattern (35 bp):
TCTAATTCTGATTCACATGTTAAGCATGCCATAAA
Found at i:32735987 original size:42 final size:42
Alignment explanation
Indices: 32735866--32735987 Score: 138
Period size: 43 Copynumber: 2.9 Consensus size: 42
32735856 TACCGTACCA
*
32735866 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCATATCG
** * ** * *
32735908 ATGTTAATAGCTTAGCTATGGTCTTACACG-AAGTCTCATATCG
1 ATG-CCATATCCCAGATATGGTCTTACATGTAA-TCTCATATCG
*
32735951 ATGCCATATCCCAGATATTGTCTTACATGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCA
32735988 GTAACCCTAA
Statistics
Matches: 61, Mismatches: 16, Indels: 6
0.73 0.19 0.07
Matches are distributed among these distances:
42 28 0.46
43 33 0.54
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGTAATCTCATATCG
Found at i:32737089 original size:13 final size:13
Alignment explanation
Indices: 32737071--32737096 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32737061 GCCCAAACGT
32737071 CAAAATTTTCAAA
1 CAAAATTTTCAAA
32737084 CAAAATTTTCAAA
1 CAAAATTTTCAAA
32737097 AAATTATTCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (13 bp):
CAAAATTTTCAAA
Found at i:32739347 original size:40 final size:40
Alignment explanation
Indices: 32739292--32739448 Score: 219
Period size: 40 Copynumber: 4.0 Consensus size: 40
32739282 CTGGAAAAAA
* *
32739292 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGTTGGTTAT
1 TATAACCGGGTTAAGTCCCAAAGGCATTCGTGCTGGTTAT
*
32739332 TATAACCGGGTTAAGTCCCAAAGGCATTTGTGC-GTGTTAT
1 TATAACCGGGTTAAGTCCCAAAGGCATTCGTGCTG-GTTAT
* *
32739372 TATAACCAGGTTAAGTCCCAAAGGCATTCGTGCGGGTTA-
1 TATAACCGGGTTAAGTCCCAAAGGCATTCGTGCTGGTTAT
* * *
32739411 TATAACCGAGTTAAGTCCCGAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCAAAGGCATTCGTGCTGGTT
32739449 GTTACATCCG
Statistics
Matches: 105, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
39 34 0.32
40 70 0.67
41 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCAAAGGCATTCGTGCTGGTTAT
Found at i:32747441 original size:11 final size:11
Alignment explanation
Indices: 32747425--32747454 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
32747415 ACTAAGGTGA
32747425 TTTTCTTTTTT
1 TTTTCTTTTTT
32747436 TTTTCTTTTTT
1 TTTTCTTTTTT
32747447 TTTCTCTT
1 TTT-TCTT
32747455 CATTTAAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.78
12 4 0.22
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (11 bp):
TTTTCTTTTTT
Found at i:32747513 original size:13 final size:14
Alignment explanation
Indices: 32747495--32747532 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
32747485 TATATGTACT
*
32747495 AAATAATATAAT-A
1 AAATAATAAAATGA
32747508 AAATAATAAAATGA
1 AAATAATAAAATGA
*
32747522 AAATAACAAAA
1 AAATAATAAAA
32747533 AAAAGAGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 11 0.50
14 11 0.50
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.21
Consensus pattern (14 bp):
AAATAATAAAATGA
Found at i:32749247 original size:20 final size:20
Alignment explanation
Indices: 32749197--32749248 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
32749187 TTGGAGAGTC
*
32749197 ACACGCCTGTGTGGCTTGGG
1 ACACGCCCGTGTGGCTTGGG
* *
32749217 ACATGCTCGTGTGGCTTGGG
1 ACACGCCCGTGTGGCTTGGG
32749237 ACACGCCCGTGT
1 ACACGCCCGTGT
32749249 CCTCAGCCCG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.12, C:0.27, G:0.37, T:0.25
Consensus pattern (20 bp):
ACACGCCCGTGTGGCTTGGG
Found at i:32751719 original size:24 final size:24
Alignment explanation
Indices: 32751665--32751760 Score: 133
Period size: 24 Copynumber: 4.0 Consensus size: 24
32751655 GCTTTATCAT
*
32751665 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
32751690 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
32751714 ACAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
32751737 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
32751761 CACTTCCTCC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
23 22 0.34
24 30 0.47
25 12 0.19
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:32751742 original size:23 final size:23
Alignment explanation
Indices: 32751686--32751758 Score: 119
Period size: 23 Copynumber: 3.1 Consensus size: 23
32751676 CCTAGCCTCT
*
32751686 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
32751709 TTTTAACAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
32751733 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
32751756 TTT
1 TTT
32751759 TACACTTCCT
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
23 25 0.54
24 21 0.46
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:32751834 original size:20 final size:20
Alignment explanation
Indices: 32751809--32751874 Score: 89
Period size: 20 Copynumber: 3.4 Consensus size: 20
32751799 TTATGATTAC
*
32751809 ATCATGTGCATATCATAAAT
1 ATCATGTGCATATCATACAT
*
32751829 ATCATGTCCATATCAT-CAT
1 ATCATGTGCATATCATACAT
*
32751848 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
32751868 ACCATGT
1 ATCATGT
32751875 TTATTAAAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
19 16 0.41
20 23 0.59
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:32751943 original size:25 final size:25
Alignment explanation
Indices: 32751911--32751958 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
32751901 ATACATAAAC
* * *
32751911 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
32751936 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
32751959 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:32754150 original size:40 final size:40
Alignment explanation
Indices: 32754091--32754254 Score: 283
Period size: 40 Copynumber: 4.1 Consensus size: 40
32754081 TGGGATTTAA
*
32754091 CCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
32754131 CCGAATATAGTAACTCGCACCAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
32754171 CCGGATACAGTGACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
32754211 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
32754251 CCGG
1 CCGG
32754255 TTATCATCCG
Statistics
Matches: 117, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 117 1.00
ACGTcount: A:0.26, C:0.30, G:0.23, T:0.21
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:32762853 original size:31 final size:31
Alignment explanation
Indices: 32762815--32762878 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
32762805 CCTTTTCATA
*
32762815 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACAGGGCCGAAGCCT
**
32762846 TTTCATATTTCATATTACAGGGCCGAAGCCT
1 TTTCATATTTCATAACACAGGGCCGAAGCCT
32762877 TT
1 TT
32762879 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATATTTCATAACACAGGGCCGAAGCCT
Found at i:32763143 original size:23 final size:24
Alignment explanation
Indices: 32763086--32763167 Score: 112
Period size: 24 Copynumber: 3.4 Consensus size: 24
32763076 CTGGAGGCCT
* *
32763086 AGCCTCTTTTAATAACTTGGGCAAA
1 AGCC-CTTTTAATAACTAGGGCATA
*
32763111 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTAGGGCATA
32763135 AGCCC-TTTAATAACTAGGGCATA
1 AGCCCTTTTAATAACTAGGGCATA
*
32763158 AGCCATTTTA
1 AGCCCTTTTA
32763168 CACTTCCTCC
Statistics
Matches: 52, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
23 21 0.40
24 27 0.52
25 4 0.08
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTAGGGCATA
Found at i:32763243 original size:20 final size:20
Alignment explanation
Indices: 32763218--32763282 Score: 103
Period size: 20 Copynumber: 3.2 Consensus size: 20
32763208 ATGATTACAT
*
32763218 CATGTGCATATCACACATAC
1 CATGTGCATATCATACATAC
**
32763238 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATAC
32763258 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAC
32763278 CATGT
1 CATGT
32763283 TTATCAAAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.32, C:0.25, G:0.12, T:0.31
Consensus pattern (20 bp):
CATGTGCATATCATACATAC
Found at i:32763351 original size:25 final size:25
Alignment explanation
Indices: 32763319--32763366 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
32763309 ATACATAAAC
* * *
32763319 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
32763344 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
32763367 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:32765627 original size:28 final size:28
Alignment explanation
Indices: 32765595--32765659 Score: 105
Period size: 28 Copynumber: 2.3 Consensus size: 28
32765585 ATTTACTAGA
*
32765595 ATACCCCTATGTATGCAAAATTACCAT-T
1 ATACCCCTATGTATGCAAAATGACC-TCT
32765623 ATACCCCTATGTATGCAAAATGACCTCT
1 ATACCCCTATGTATGCAAAATGACCTCT
32765651 ATACCCCTA
1 ATACCCCTA
32765660 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 34 0.97
ACGTcount: A:0.34, C:0.29, G:0.08, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCTCT
Found at i:32765796 original size:28 final size:27
Alignment explanation
Indices: 32765765--32765854 Score: 83
Period size: 27 Copynumber: 3.2 Consensus size: 27
32765755 AGGGAGCGTC
**
32765765 CTGGTGGTTATGCCACAAACTATCTGTT
1 CTGGTGGCCATGCCACAAA-TATCTGTT
* * *
32765793 CTGGTAGCCCTGCCACATATATCTGTT
1 CTGGTGGCCATGCCACAAATATCTGTT
*
32765820 CTGGTGG-CACTGCCACAACATATTTGTAT
1 CTGGTGGCCA-TGCCACAA-ATATCTGT-T
32765849 CTGGTG
1 CTGGTG
32765855 ACTCTGTCAC
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
26 1 0.02
27 21 0.42
28 21 0.42
29 7 0.14
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.33
Consensus pattern (27 bp):
CTGGTGGCCATGCCACAAATATCTGTT
Found at i:32765823 original size:27 final size:28
Alignment explanation
Indices: 32765775--32765837 Score: 92
Period size: 27 Copynumber: 2.3 Consensus size: 28
32765765 CTGGTGGTTA
*
32765775 TGCCACAAACTATCTGTTCTGGTAGCCC
1 TGCCACAAACTATCTGTTCTGGTAGCAC
* *
32765803 TGCCACATA-TATCTGTTCTGGTGGCAC
1 TGCCACAAACTATCTGTTCTGGTAGCAC
32765830 TGCCACAA
1 TGCCACAA
32765838 CATATTTGTA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
27 23 0.74
28 8 0.26
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.29
Consensus pattern (28 bp):
TGCCACAAACTATCTGTTCTGGTAGCAC
Found at i:32765865 original size:29 final size:28
Alignment explanation
Indices: 32765775--32765865 Score: 80
Period size: 27 Copynumber: 3.2 Consensus size: 28
32765765 CTGGTGGTTA
*
32765775 TGCCACAA-ACTATCTGTTCTGGT-AGCCC
1 TGCCACAACA-TATCTGTTCTGGTGA-CAC
* *
32765803 TGCCAC-ATATATCTGTTCTGGTGGCAC
1 TGCCACAACATATCTGTTCTGGTGACAC
* *
32765830 TGCCACAACATATTTGTATCTGGTGACTC
1 TGCCACAACATATCTGT-TCTGGTGACAC
*
32765859 TGTCACA
1 TGCCACA
32765866 TTTTCAGTAT
Statistics
Matches: 52, Mismatches: 7, Indels: 7
0.79 0.11 0.11
Matches are distributed among these distances:
27 22 0.42
28 15 0.29
29 15 0.29
ACGTcount: A:0.22, C:0.27, G:0.19, T:0.32
Consensus pattern (28 bp):
TGCCACAACATATCTGTTCTGGTGACAC
Found at i:32770902 original size:47 final size:47
Alignment explanation
Indices: 32770826--32771032 Score: 310
Period size: 47 Copynumber: 4.4 Consensus size: 47
32770816 TCGCATAACT
* * * *
32770826 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTT-GGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCA-TTAGGCCC
*
32770873 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-CC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* *
32770919 TCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCT
1 T-ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
32770967 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
32771014 TATCACATATATACACTTT
1 TATCACATATATACACTTT
32771033 GTGACAGCCC
Statistics
Matches: 148, Mismatches: 9, Indels: 6
0.91 0.06 0.04
Matches are distributed among these distances:
46 5 0.03
47 141 0.95
48 2 0.01
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
Found at i:32772057 original size:49 final size:49
Alignment explanation
Indices: 32771986--32772093 Score: 193
Period size: 49 Copynumber: 2.2 Consensus size: 49
32771976 GGGGTGTTAC
32771986 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
32772035 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATAT
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
32772084 ACA--TTCACAT
1 ACACTTTCACAT
32772094 CACAATTATC
Statistics
Matches: 58, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
47 7 0.12
49 51 0.88
ACGTcount: A:0.31, C:0.29, G:0.07, T:0.33
Consensus pattern (49 bp):
ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
Found at i:32775250 original size:40 final size:40
Alignment explanation
Indices: 32775151--32775594 Score: 584
Period size: 40 Copynumber: 10.9 Consensus size: 40
32775141 CGAATACACG
* * * *
32775151 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * ** * *
32775191 -AACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * *
32775230 TCACTAGCACGAATGCTCTTCAGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
32775270 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
** *
32775310 TCACTAGCACAAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
32775350 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
32775390 CCACTAGCATGAATGCTCTTCGGTTCTTCGGGACTTAGCCCGGATATA
1 TCACTAGCATGAATG-----C---TCTTCGGGACTTAGCCCGGATACA
* * *
32775438 TCACTGGCTTGAATGCTCTTCGGGACTTAGCCCGAATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
32775478 TCACTGGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
32775518 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
32775558 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
32775595 CATTGTCGAG
Statistics
Matches: 359, Mismatches: 36, Indels: 18
0.87 0.09 0.04
Matches are distributed among these distances:
39 32 0.09
40 289 0.81
43 1 0.00
45 1 0.00
48 36 0.10
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:32775495 original size:168 final size:167
Alignment explanation
Indices: 32775138--32775580 Score: 587
Period size: 168 Copynumber: 2.7 Consensus size: 167
32775128 AGGCACGAAG
* * * * * * *
32775138 GCCCGAATACACGTCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA-AACCAGCACGA
1 GCCCGAATACA--TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGA
** * *
32775202 ATGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAATG-----C--TCTTCAGAACTTAG
64 ATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCATGAATGCTCTTCGGTCTTCAGAACTTAG
32775260 CCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTA
129 CCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTA
* * ** *
32775299 GCCCGGATATATCACTAGCACAAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAAT
1 GCCCGAATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAAT
* * *
32775364 GCTCTTCGGGACTTAGCCCGGATATACCACTAGCATGAATGCTCTTCGGTTCTTCGGGACTTAGC
66 GCTCTTCGGGACTTAGCCCGGATATATCACTAGCATGAATGCTCTTCGG-TCTTCAGAACTTAGC
* * *
32775429 CCGGATATATCACTGGCTTGAATGCTCTTCGGGACTTA
130 CCGGATACATCACTAGCATGAATGCTCTTCGGGACTTA
*
32775467 GCCCGAATACATCACTGGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAAT
1 GCCCGAATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAAT
*
32775532 GCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGG
66 GCTCTTCGGGACTTAGCCCGGATATATCACTAGCATGAATGCTCTTCGG
32775581 GACTTAGCCC
Statistics
Matches: 243, Mismatches: 30, Indels: 11
0.86 0.11 0.04
Matches are distributed among these distances:
159 33 0.14
160 46 0.19
161 9 0.04
165 1 0.00
168 154 0.63
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (167 bp):
GCCCGAATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAAT
GCTCTTCGGGACTTAGCCCGGATATATCACTAGCATGAATGCTCTTCGGTCTTCAGAACTTAGCC
CGGATACATCACTAGCATGAATGCTCTTCGGGACTTA
Found at i:32775505 original size:208 final size:199
Alignment explanation
Indices: 32775151--32775594 Score: 636
Period size: 208 Copynumber: 2.2 Consensus size: 199
32775141 CGAATACACG
* * * *
32775151 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAAACCAGCACGAATGCTCTTCGGGGT
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATAAACCAGCACGAATGCTCTTCGGGGC
*
32775216 TTAGCACGGATATATCACTAGCACGAATGCTCTTCAGAACTTAGCCCGGATACATCACTAGCATG
66 TTAGCACGGATATATCACTAGCACGAATGCTCTTCAGAACTTAGCCCGAATACATCACTAGCATG
*
32775281 AATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACAAATGCTCTTCGGAACTTAGCCCGGA
131 AATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACAAATGCTCTTCGGAACTTAGCCCGGA
32775346 TACA
196 TACA
* * *
32775350 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATACCACTAGCATGAATGCTCTTCGGTT
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA-AACCAGCACGAATGCTCTTC-G--
* * ** * *
32775415 CTTCGGGACTTAGCCCGGATATATCACTGGCTTGAATGCTCTTCGGGACTTAGCCCGAATACATC
62 ----GGG-CTTAGCACGGATATATCACTAGCACGAATGCTCTTCAGAACTTAGCCCGAATACATC
* ** *
32775480 ACTGGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACT
122 ACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACAAATGCTCTTCGGAACT
32775545 TAGCCCGGATACA
187 TAGCCCGGATACA
32775558 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
32775595 CATTGTCGAG
Statistics
Matches: 217, Mismatches: 19, Indels: 9
0.89 0.08 0.04
Matches are distributed among these distances:
199 37 0.17
200 17 0.08
201 1 0.00
207 3 0.01
208 159 0.73
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (199 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATAAACCAGCACGAATGCTCTTCGGGGC
TTAGCACGGATATATCACTAGCACGAATGCTCTTCAGAACTTAGCCCGAATACATCACTAGCATG
AATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACAAATGCTCTTCGGAACTTAGCCCGGA
TACA
Found at i:32780330 original size:40 final size:40
Alignment explanation
Indices: 32780248--32780458 Score: 311
Period size: 40 Copynumber: 5.3 Consensus size: 40
32780238 GCTCCTCGTT
* * *
32780248 CAAATGCCTTCGGGACAT-AGCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
32780287 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCTCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
32780327 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
32780367 CAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
32780407 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
32780446 CAAATGCCTTCGG
1 CAAATGCCTTCGG
32780459 ATCTTAGTCC
Statistics
Matches: 158, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 50 0.32
40 106 0.67
41 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:32780504 original size:79 final size:80
Alignment explanation
Indices: 32780250--32780506 Score: 309
Period size: 79 Copynumber: 3.2 Consensus size: 80
32780240 TCCTCGTTCA
*
32780250 AATGCCTTCGGGACATAG-CCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGACTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGATT-TAGT-ATCTCGCACAAATGCCTTCGGGACTTAACCCGG
32780312 ATTTAGTAACTCT-CAC
64 ATTTAGTAACTCTACAC
* * *
32780328 AAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGAA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGGA
32780393 TTTAGTAACTCGTACA-
65 TTTAGTAACTC-TACAC
* **
32780409 AATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCACAAATGCCTTCGGGA-CTTAACCCGGA
*
32780472 TATT-GTCACT-TAGCAC
65 T-TTAGTAACTCTA-CAC
32780488 AA-GCCTTCGGGACTTAGCC
1 AATGCCTTCGGGACTTAGCC
32780507 TGGACAGCAT
Statistics
Matches: 157, Mismatches: 11, Indels: 20
0.84 0.06 0.11
Matches are distributed among these distances:
77 2 0.01
78 14 0.09
79 73 0.46
80 63 0.40
81 3 0.02
82 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGGAT
TTAGTAACTCTACAC
Found at i:32781604 original size:12 final size:12
Alignment explanation
Indices: 32781587--32781611 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
32781577 GGATGAGCAT
32781587 TTTTTTTCTTTC
1 TTTTTTTCTTTC
32781599 TTTTTTTCTTTC
1 TTTTTTTCTTTC
32781611 T
1 T
32781612 AGTTTCGGCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTTTTTCTTTC
Found at i:32784446 original size:48 final size:48
Alignment explanation
Indices: 32784387--32784652 Score: 238
Period size: 48 Copynumber: 5.5 Consensus size: 48
32784377 ATTGTCGATA
* * * * *
32784387 CCATGTTCCAAACATGGTCTTACACTGGCTTACATGTCGAGGTTGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTTACATGTCAATGTTGATG
* * *
32784435 CCATGTCCCAAACATGGTCTTCCACTAGC-T-CTTGTTTCAATGTTGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTTACATG--TCAATGTTGATG
* * *** * *
32784483 GCATGTCCCAGACATGGTCTTAGACTAGGACACATGTCAATGTCGATA
1 CCATGTCCCAGACATGGTCTTACACTAGCTTACATGTCAATGTTGATG
32784531 CCATGTCCCAGACATGGTCTTACACTAGCTCT-CA--T-AATGTGGCTGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCT-TACATGTCAATGT---TGATG
* ** ** *
32784579 CCATGTCCTAGACATGGTCTTACACTAGCACACATGTCAATGCCGATT
1 CCATGTCCCAGACATGGTCTTACACTAGCTTACATGTCAATGTTGATG
*
32784627 CCATGTCCCATACATGGTCTTACACT
1 CCATGTCCCAGACATGGTCTTACACT
32784653 GGCTCTCACC
Statistics
Matches: 176, Mismatches: 30, Indels: 24
0.77 0.13 0.10
Matches are distributed among these distances:
45 5 0.03
46 4 0.02
47 1 0.01
48 158 0.90
50 4 0.02
51 4 0.02
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (48 bp):
CCATGTCCCAGACATGGTCTTACACTAGCTTACATGTCAATGTTGATG
Found at i:32784557 original size:96 final size:95
Alignment explanation
Indices: 32784387--32784750 Score: 299
Period size: 96 Copynumber: 3.8 Consensus size: 95
32784377 ATTGTCGATA
* * * ** * * ** *
32784387 CCATGTTCCAAACATGGTCTTACACTGGCTTACATGTCGAGGTTGATGCCATGTCCCAAACATGG
1 CCATGTCCCAGACATGGTCTTACACTAGCACACATGTCAATGCCGATACCATGTCCCAAACATGG
* **
32784452 TCTTCCACTAGCTCTTGTTTCAATGT-TGATG
66 TCTTACACTAGCTCTT-CAT-AATGTGTGATG
* * * * *
32784483 GCATGTCCCAGACATGGTCTTAGACTAGGACACATGTCAATGTCGATACCATGTCCCAGACATGG
1 CCATGTCCCAGACATGGTCTTACACTAGCACACATGTCAATGCCGATACCATGTCCCAAACATGG
32784548 TCTTACACTAGCTC-TCATAATGTGGCTGATG
66 TCTTACACTAGCTCTTCATAATGT-G-TGATG
* * *
32784579 CCATGTCCTAGACATGGTCTTACACTAGCACACATGTCAATGCCGATTCCATGTCCCATACATGG
1 CCATGTCCCAGACATGGTCTTACACTAGCACACATGTCAATGCCGATACCATGTCCCAAACATGG
* * *
32784644 TCTTACACTGGCTC-TCACCATAT-TTTCGATG
66 TCTTACACTAGCTCTTCA-TA-ATGTGT-GATG
** * * * * * * * *
32784675 CCATGTTTCA-ACATGATCTTACACTGGCTCTCATAT-TATGGCCGACACCATGTCCCAGACATG
1 CCATGTCCCAGACATGGTCTTACACTAGCACACATGTCAAT-GCCGATACCATGTCCCAAACATG
*
32784738 GTCTTACGCTAGC
65 GTCTTACACTAGC
32784751 ACACATATCA
Statistics
Matches: 221, Mismatches: 40, Indels: 15
0.80 0.14 0.05
Matches are distributed among these distances:
93 5 0.02
94 3 0.01
95 54 0.24
96 155 0.70
97 2 0.01
98 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (95 bp):
CCATGTCCCAGACATGGTCTTACACTAGCACACATGTCAATGCCGATACCATGTCCCAAACATGG
TCTTACACTAGCTCTTCATAATGTGTGATG
Found at i:32784642 original size:144 final size:143
Alignment explanation
Indices: 32784377--32784756 Score: 374
Period size: 144 Copynumber: 2.6 Consensus size: 143
32784367 CAAGCGGTGA
* * *
32784377 ATTGTCGATACCATGTTCCAAACATGGTCTTACACTGGCT-TACAT-GTCGAGGTTGATGCCATG
1 ATTGTCGATACCATGTTCC-AACATGGTCTTACACTGGCTCT-CATAAT-GTGGCTGATGCCATG
* * * *** * ** *
32784440 TCCCAAACATGGTCTTCCACTAGCTCTTGTTTCAATGTTGATGGCATGTCCCAGACATGGTCTTA
63 TCCCAGACATGGTCTTACACTAGCACACATGTCAATGCCGATGCCATGTCCCAGACATGGTCTTA
* **
32784505 GACTAGGACACAT-GTCA-
128 CACT-GG-CAC-TCACCAT
* *
32784522 A-TGTCGATACCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGCTGATGCCATGTC
1 ATTGTCGATACCATGTTCCA-ACATGGTCTTACACTGGCTCTCATAATGTGGCTGATGCCATGTC
* * *
32784586 CTAGACATGGTCTTACACTAGCACACATGTCAATGCCGATTCCATGTCCCATACATGGTCTTACA
65 CCAGACATGGTCTTACACTAGCACACATGTCAATGCCGATGCCATGTCCCAGACATGGTCTTACA
*
32784651 CTGGCTCTCACCAT
130 CTGGCACTCACCAT
* * * * * * * **
32784665 ATTTTCGATGCCATGTTTCAACATGATCTTACACTGGCTCTCATATTATGGCCGACACCATGTCC
1 ATTGTCGATACCATGTTCCAACATGGTCTTACACTGGCTCTCATAATGTGGCTGATGCCATGTCC
*
32784730 CAGACATGGTCTTACGCTAGCACACAT
66 CAGACATGGTCTTACACTAGCACACAT
32784757 ATCACCCAAA
Statistics
Matches: 194, Mismatches: 35, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
141 1 0.01
142 4 0.02
143 67 0.35
144 119 0.61
145 3 0.02
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.30
Consensus pattern (143 bp):
ATTGTCGATACCATGTTCCAACATGGTCTTACACTGGCTCTCATAATGTGGCTGATGCCATGTCC
CAGACATGGTCTTACACTAGCACACATGTCAATGCCGATGCCATGTCCCAGACATGGTCTTACAC
TGGCACTCACCAT
Found at i:32784679 original size:48 final size:46
Alignment explanation
Indices: 32784431--32784750 Score: 198
Period size: 48 Copynumber: 6.7 Consensus size: 46
32784421 TGTCGAGGTT
* * ** *
32784431 GATGCCATGTCCCAAACATGGTCTTCCACTAGCTCTTGTTTCAA-TGTT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTC---TCACAATTGTC
* * * **
32784479 GATGGCATGTCCCAGACATGGTCTTAGACTAGGACACATGTCAA-TGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTA-G-CTC-TCACAATTGTC
* * *
32784527 GATACCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACAAT-TGTC
* * * *
32784574 TGATGCCATGTCCTAGACATGGTCTTACACTAGCACACATGTCAA-TGCC
1 -GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCA---CAATTGTC
* * * *
32784623 GATTCCATGTCCCATACATGGTCTTACACTGGCTCTCACCATATTTTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCA-CA-ATTGTC
** * * * * *
32784671 GATGCCATGTTTCA-ACATGATCTTACACTGGCTCTCATATTATGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACA--ATTGTC
** *
32784718 GACACCATGTCCCAGACATGGTCTTACGCTAGC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGC
32784751 ACACATATCA
Statistics
Matches: 214, Mismatches: 46, Indels: 24
0.75 0.16 0.08
Matches are distributed among these distances:
45 3 0.01
46 5 0.02
47 41 0.19
48 157 0.73
49 4 0.02
50 2 0.01
51 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (46 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACAATTGTC
Found at i:32784758 original size:48 final size:47
Alignment explanation
Indices: 32784484--32784758 Score: 214
Period size: 48 Copynumber: 5.8 Consensus size: 47
32784474 ATGTTGATGG
* * * * *
32784484 CATGTCCCAGACATGGTCTTAGACTAGGACACATGTCAATGTCGATAC
1 CATGTCCCAGACATGGTCTTACACTAGCACACATAT-TATGCCGATAC
* * * * * *
32784532 CATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGCTGATGC
1 CATGTCCCAGACATGGTCTTACACTAGCACACATATTAT-GCCGATAC
* * * *
32784580 CATGTCCTAGACATGGTCTTACACTAGCACACATGTCAATGCCGATTC
1 CATGTCCCAGACATGGTCTTACACTAGCACACATAT-TATGCCGATAC
* * * * *
32784628 CATGTCCCATACATGGTCTTACACTGGCTCTCACCATATT-T-TCGATGC
1 CATGTCCCAGACATGGTCTTACACTAG--CACA-CATATTATGCCGATAC
** * * * * *
32784676 CATGTTTCA-ACATGATCTTACACTGGCTCTCATATTATGGCCGACAC
1 CATGTCCCAGACATGGTCTTACACTAGCACACATATTAT-GCCGATAC
*
32784723 CATGTCCCAGACATGGTCTTACGCTAGCACACATAT
1 CATGTCCCAGACATGGTCTTACACTAGCACACATAT
32784759 CACCCAAATG
Statistics
Matches: 176, Mismatches: 42, Indels: 18
0.75 0.18 0.08
Matches are distributed among these distances:
44 6 0.03
45 4 0.02
47 28 0.16
48 129 0.73
49 2 0.01
50 3 0.02
51 4 0.02
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.29
Consensus pattern (47 bp):
CATGTCCCAGACATGGTCTTACACTAGCACACATATTATGCCGATAC
Done.