Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 104 of 356
Found at i:32787615 original size:37 final size:37
Alignment explanation
Indices: 32787565--32787643 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
32787555 TTATTACGAA
* * *
32787565 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
32787602 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
32787639 GTCTT
1 GTCTT
32787644 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:32787848 original size:22 final size:23
Alignment explanation
Indices: 32787818--32787898 Score: 67
Period size: 22 Copynumber: 3.5 Consensus size: 23
32787808 TACACTTTCA
32787818 CATTCATCACATCGGCCATTAGG
1 CATTCATCACATCGGCCATTAGG
**** ***
32787841 CATT-ATCACATATATACACTTTCA
1 CATTCATCACAT-CGGCCA-TTAGG
32787865 CATTCATCACATCGGCCATTAGG
1 CATTCATCACATCGGCCATTAGG
32787888 CATT-ATCACAT
1 CATTCATCACAT
32787899 ATATACACTT
Statistics
Matches: 41, Mismatches: 14, Indels: 7
0.66 0.23 0.11
Matches are distributed among these distances:
22 14 0.34
23 12 0.29
24 8 0.20
25 7 0.17
ACGTcount: A:0.31, C:0.28, G:0.10, T:0.31
Consensus pattern (23 bp):
CATTCATCACATCGGCCATTAGG
Found at i:32787874 original size:25 final size:24
Alignment explanation
Indices: 32787841--32787923 Score: 71
Period size: 25 Copynumber: 3.5 Consensus size: 24
32787831 GGCCATTAGG
32787841 CATTATCACATATATACACTTTCA
1 CATTATCACATATATACACTTTCA
**** ***
32787865 CATTCATCACAT-CGGCCA-TTAGG
1 CATT-ATCACATATATACACTTTCA
32787888 CATTATCACATATATACACTTTCA
1 CATTATCACATATATACACTTTCA
32787912 CATTCATCACAT
1 CATT-ATCACAT
32787924 CGGCCATTAG
Statistics
Matches: 41, Mismatches: 14, Indels: 7
0.66 0.23 0.11
Matches are distributed among these distances:
22 7 0.17
23 8 0.20
24 12 0.29
25 14 0.34
ACGTcount: A:0.34, C:0.28, G:0.05, T:0.34
Consensus pattern (24 bp):
CATTATCACATATATACACTTTCA
Found at i:32787983 original size:47 final size:47
Alignment explanation
Indices: 32787761--32787983 Score: 392
Period size: 47 Copynumber: 4.7 Consensus size: 47
32787751 GCCCTTCGGG
*
32787761 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
32787811 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
32787858 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
32787905 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
32787952 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
32787984 ATACTATCAT
Statistics
Matches: 170, Mismatches: 3, Indels: 3
0.97 0.02 0.02
Matches are distributed among these distances:
47 133 0.78
49 33 0.19
50 4 0.02
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:32791793 original size:40 final size:40
Alignment explanation
Indices: 32791507--32791847 Score: 384
Period size: 40 Copynumber: 8.5 Consensus size: 40
32791497 AGCTTGATTA
* * * *
32791507 CTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* ** * *
32791547 CTCTTTGGGGTTTAGCACGGATATATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
*
32791587 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* * *
32791627 CTCCTCGGGACTTAGCCCGGATATATCACTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* *
32791667 CTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* *
32791707 CTCTTCGGGACTTAGCCCGGATACATCGCTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
** * * *
32791747 CTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATG
1 CTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAATG
* ** *
32791788 C-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AAAG
1 CTCTTCGGGA-CTTAGCCCGGATA-CATCAC-TAGCACGAATG
32791828 C-CTTCGGGACTTAGCCCGGA
1 CTCTTCGGGACTTAGCCCGGA
32791848 CATCATTCGA
Statistics
Matches: 259, Mismatches: 37, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
39 3 0.01
40 237 0.92
41 19 0.07
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
Found at i:32792192 original size:29 final size:29
Alignment explanation
Indices: 32792153--32792231 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
32792143 CTTAATAATC
*
32792153 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
32792183 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
32792212 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
32792232 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:32794178 original size:37 final size:37
Alignment explanation
Indices: 32794128--32794206 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
32794118 TTATTACGAA
* * *
32794128 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
32794165 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
32794202 GTCTT
1 GTCTT
32794207 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:32794484 original size:47 final size:48
Alignment explanation
Indices: 32794324--32794548 Score: 373
Period size: 47 Copynumber: 4.7 Consensus size: 48
32794314 GCCCTTCGGG
32794324 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCCTATCACA-ATATATAC
*
32794374 ACTTTCACATTCATTACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACA-ATATATAC
**
32794423 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCAC-ATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACAATATATAC
*
32794470 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACAATATATAC
32794517 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
32794549 ATACTATCAT
Statistics
Matches: 170, Mismatches: 5, Indels: 3
0.96 0.03 0.02
Matches are distributed among these distances:
47 86 0.51
49 80 0.47
50 4 0.02
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (48 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACAATATATAC
Found at i:32794507 original size:96 final size:95
Alignment explanation
Indices: 32794324--32794547 Score: 369
Period size: 96 Copynumber: 2.3 Consensus size: 95
32794314 GCCCTTCGGG
* *
32794324 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATT
1 ACTT-TCACATTCATCACATCGGCCATTAGGCACTATCACA-ATATATACACTTTCACATTCATC
32794389 ACATCGGCCATTAGGCCCTATCACATATATATAC
64 ACATCGGCCATTAGGCCCTATCAC--ATATATAC
*
32794423 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCAC-ATATATACACTTTCACATTCATCAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCACTATCACAATATATACACTTTCACATTCATCAC
*
32794487 ATCGGCCATTAGGCCTTATCACATATATAC
66 ATCGGCCATTAGGCCCTATCACATATATAC
32794517 ACTTTCACATTCATCACATCGGCCATTAGGC
1 ACTTTCACATTCATCACATCGGCCATTAGGC
32794548 CATACTATCA
Statistics
Matches: 121, Mismatches: 4, Indels: 5
0.93 0.03 0.04
Matches are distributed among these distances:
94 39 0.32
96 45 0.37
98 33 0.27
99 4 0.03
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.31
Consensus pattern (95 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCACTATCACAATATATACACTTTCACATTCATCAC
ATCGGCCATTAGGCCCTATCACATATATAC
Found at i:32799560 original size:48 final size:47
Alignment explanation
Indices: 32799505--32800014 Score: 228
Period size: 48 Copynumber: 10.6 Consensus size: 47
32799495 AGTGATTTGC
* * *
32799505 TGATGCCATGTTCCAAACATGGTCTTACACCAGCT-TAAATGTCGAGGG
1 TGATGCCATGTCCCAAACATGGTCTTACACCAGCTCT-AATCTC-AAGG
* * * *
32799553 TGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCAATG
1 TGATGCCATGTCCCAAACATGGTCTTACACCAGCTCTAATCTCAAGG
* * * * *
32799600 TCGATGCCATGTCCCAAACACGGTCTTACACTAGCAC-ACATGTCAATGC
1 T-GATGCCATGTCCCAAACATGGTCTTACACCAGCTCTA-ATCTCAA-GG
* * * ** * *
32799649 CGATGCCATGTCACAGACATGGTCTTACACTGGCTCTCGTAATGTC-A-C
1 TGATGCCATGTCCCAAACATGGTCTTACACCAG--CTC-TAATCTCAAGG
* * * * * ** *
32799697 CGATGCTATGTCCTAGACATGGTCTTACACTAGCTCTTGTCTCAATGC
1 TGATGCCATGTCCCAAACATGGTCTTACACCAGCTCTAATCTCAA-GG
* * * * *
32799745 CGATGCCATGTCCCAAACATGGTCTTACACTAGCAC-ACATGTCAATGC
1 TGATGCCATGTCCCAAACATGGTCTTACACCAGCTCTA-ATCTCAA-GG
* * * * ** * * **
32799793 CGATGTCATGTCCTAGACATGGTCTTACACTGGCTCTCATAAT-GTGG
1 TGATGCCATGTCCCAAACATGGTCTTACACCAGCTCTAAT-CTCAAGG
* * * * *
32799840 CTGATGTCATGTCCCAAACATGGTCTTACACTAGCAC-ACATGTCAATG
1 -TGATGCCATGTCCCAAACATGGTCTTACACCAGCTCTA-ATCTCAAGG
* * * * *
32799888 TCGATGCCAGGTCCCAAACATGGTCTTCCACTAGCTCTCA-C-CAAATCGC
1 T-GATGCCATGTCCCAAACATGGTCTTACACCAGCTCTAATCTC-AA--GG
* * * ** * **
32799937 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTTGTATCGTGG
1 TGATGCCATGTCCCAAACATGGTCTTACACCAGCTCTAATCTCAAGG
* *
32799984 CTGACGCCATGTCCCAAACATAGTCTTACAC
1 -TGATGCCATGTCCCAAACATGGTCTTACAC
32800015 TAGCACACAT
Statistics
Matches: 361, Mismatches: 76, Indels: 50
0.74 0.16 0.10
Matches are distributed among these distances:
45 4 0.01
46 5 0.01
47 9 0.02
48 331 0.92
49 2 0.01
50 4 0.01
51 5 0.01
52 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (47 bp):
TGATGCCATGTCCCAAACATGGTCTTACACCAGCTCTAATCTCAAGG
Found at i:32799670 original size:96 final size:95
Alignment explanation
Indices: 32799506--32800024 Score: 467
Period size: 96 Copynumber: 5.4 Consensus size: 95
32799496 GTGATTTGCT
* * * * * * ** *
32799506 GATGCCATGTTCCAAACATGGTCTTACACCAGCTTAAATGTCGAGGGTGATGCCATGTCCCAGAC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCACAT-TCAATGCCGATGCCATGTCCCAAAC
*
32799571 ATGGTCTTACACTAGCTCTCATCTCAATGTC
65 ATGGTCTTACACTAGCTCTCATGTCAATGTC
* * * *
32799602 GATGCCATGTCCCAAACACGGTCTTACACTAGCACACATGTCAATGCCGATGCCATGTCACAGAC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCACAT-TCAATGCCGATGCCATGTCCCAAAC
*
32799667 ATGGTCTTACACTGGCTCTC--GT-AATGTCACC
65 ATGGTCTTACACTAGCTCTCATGTCAATGT---C
* * * ***
32799698 GATGCTATGTCCTAGACATGGTCTTACACTAGCTCTTGTCTCAATGCCGATGCCATGTCCCAAAC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCACAT-TCAATGCCGATGCCATGTCCCAAAC
* * *
32799763 ATGGTCTTACACTAGCACACATGTCAATGCC
65 ATGGTCTTACACTAGCTCTCATGTCAATGTC
* * * * * * *
32799794 GATGTCATGTCCTAGACATGGTCTTACACTGGCTCTCA-T-AATGTGGCTGATGTCATGTCCCAA
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATTCAA--T-GCCGATGCCATGTCCCAA
* *
32799857 ACATGGTCTTACACTAGCACACATGTCAATGTC
63 ACATGGTCTTACACTAGCTCTCATGTCAATGTC
* * * * *
32799890 GATGCCAGGTCCCAAACATGGTCTTCCACTAGCTCTCA-CCAAATCGCCGATGCCATGTTCCAAA
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATTC-AAT-GCCGATGCCATGTCCCAAA
** * * *
32799954 CATGGTCTTACACTAGCTCTTGTATC-GTGGC
64 CATGGTCTTACACTAGCTCTCATGTCAATGTC
* * *
32799985 TGACGCCATGTCCCAAACATAGTCTTACACTAGCACACAT
1 -GATGCCATGTCCCAAACATGGTCTTACACTAGCTCACAT
32800025 ATCATCAAAA
Statistics
Matches: 350, Mismatches: 60, Indels: 25
0.80 0.14 0.06
Matches are distributed among these distances:
93 7 0.02
94 2 0.01
95 4 0.01
96 329 0.94
98 4 0.01
99 4 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.27
Consensus pattern (95 bp):
GATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATTCAATGCCGATGCCATGTCCCAAACA
TGGTCTTACACTAGCTCTCATGTCAATGTC
Found at i:32799984 original size:144 final size:142
Alignment explanation
Indices: 32799506--32800024 Score: 589
Period size: 144 Copynumber: 3.6 Consensus size: 142
32799496 GTGATTTGCT
* *
32799506 GATGCCATGTTCCAAACATGGTCTTACACCAGCT-T-A-AATGTCGAGGGTGATGCCATGTCCCA
1 GATGCCATG-TCCAAACATGGTCTTACACTAGCTCTCATAATGT---GGCTGATGCCATGTCCCA
* * * *
32799568 GACATGGTCTTACACTAGCTCTCATCTCAATGTCGATGCCATGTCCCAAACACGGTCTTACACTA
62 AACATGGTCTTACACTAGCACACATCTCAATGTCGATGCCATGTCCCAAACATGGTCTTACACTA
32799633 GCACACATGTCAATGCC
127 GCACACA-GTCAATGCC
* * * ** * * * *
32799650 GATGCCATGTCACAGACATGGTCTTACACTGGCTCTCGTAATGTCACCGATGCTATGTCCTAGAC
1 GATGCCATGTC-CAAACATGGTCTTACACTAGCTCTCATAATGTGGCTGATGCCATGTCCCAAAC
* *** *
32799715 ATGGTCTTACACTAGCTCTTGTCTCAATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCA
65 ATGGTCTTACACTAGCACACATCTCAATGTCGATGCCATGTCCCAAACATGGTCTTACACTAGCA
32799780 CACATGTCAATGCC
130 CACA-GTCAATGCC
* * * *
32799794 GATGTCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTGGCTGATGTCATGTCCCAAAC
1 GATGCCATGTCC-AAACATGGTCTTACACTAGCTCTCATAATGTGGCTGATGCCATGTCCCAAAC
* * * *
32799859 ATGGTCTTACACTAGCACACATGTCAATGTCGATGCCAGGTCCCAAACATGGTCTTCCACTAGCT
65 ATGGTCTTACACTAGCACACATCTCAATGTCGATGCCATGTCCCAAACATGGTCTTACACTAGCA
* *
32799924 CTCA-CCAAATCGCC
130 CACAGTC-AAT-GCC
** *
32799938 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTTGT-ATCGTGGCTGACGCCATGTCCCAAA
1 GATGCCATG-TCCAAACATGGTCTTACACTAGCTCTCATAAT-GTGGCTGATGCCATGTCCCAAA
*
32800002 CATAGTCTTACACTAGCACACAT
64 CATGGTCTTACACTAGCACACAT
32800025 ATCATCAAAA
Statistics
Matches: 324, Mismatches: 42, Indels: 18
0.84 0.11 0.05
Matches are distributed among these distances:
142 1 0.00
143 8 0.02
144 306 0.94
145 4 0.01
147 5 0.02
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.27
Consensus pattern (142 bp):
GATGCCATGTCCAAACATGGTCTTACACTAGCTCTCATAATGTGGCTGATGCCATGTCCCAAACA
TGGTCTTACACTAGCACACATCTCAATGTCGATGCCATGTCCCAAACATGGTCTTACACTAGCAC
ACAGTCAATGCC
Found at i:32804928 original size:42 final size:42
Alignment explanation
Indices: 32804881--32804987 Score: 108
Period size: 43 Copynumber: 2.5 Consensus size: 42
32804871 TTTTGCGTAT
* *
32804881 GACCATATCTGGGATATGGCATCGATATGACATTTCATGTAA
1 GACCATATCTGGGATATGGCATCGACATGACATTACATGTAA
*** ** * *
32804923 GACCATAGT-TGTTCTATTGGCGGCGGCATGAGATTACATGTAA
1 GACCATA-TCTGGGATA-TGGCATCGACATGACATTACATGTAA
32804966 GACCATATCTGGGATATGGCAT
1 GACCATATCTGGGATATGGCAT
32804988 TGGTATGGTA
Statistics
Matches: 48, Mismatches: 14, Indels: 6
0.71 0.21 0.09
Matches are distributed among these distances:
42 16 0.33
43 32 0.67
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (42 bp):
GACCATATCTGGGATATGGCATCGACATGACATTACATGTAA
Found at i:32824131 original size:35 final size:34
Alignment explanation
Indices: 32824068--32824158 Score: 132
Period size: 35 Copynumber: 2.7 Consensus size: 34
32824058 AATATTCACC
* *
32824068 AAAATGAAACAAAAATGATAAGGCTTAAAACTAA
1 AAAATGAAACAAAAATTATAAGACTTAAAACTAA
32824102 AAAATGAAACAAAAATTAATAAGACTTAAAACTAA
1 AAAATGAAACAAAAATT-ATAAGACTTAAAACTAA
*
32824137 AAAATG-GA-AAAAATTATAAGAC
1 AAAATGAAACAAAAATTATAAGAC
32824159 CTATAATTAA
Statistics
Matches: 53, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
32 7 0.13
33 7 0.13
34 17 0.32
35 22 0.42
ACGTcount: A:0.64, C:0.08, G:0.10, T:0.19
Consensus pattern (34 bp):
AAAATGAAACAAAAATTATAAGACTTAAAACTAA
Found at i:32824204 original size:40 final size:40
Alignment explanation
Indices: 32824145--32824231 Score: 129
Period size: 40 Copynumber: 2.1 Consensus size: 40
32824135 AAAAAATGGA
* *
32824145 AAAAATTATAAGACCTATAATTAATAATACAAAATATTCAC
1 AAAAA-TATAAAACCTATAATTAACAATACAAAATATTCAC
* *
32824186 AAAAATATAAAACTTATAATTAACAATACAAAATATTTAC
1 AAAAATATAAAACCTATAATTAACAATACAAAATATTCAC
32824226 AAAAAT
1 AAAAAT
32824232 TTAGATGAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
40 37 0.88
41 5 0.12
ACGTcount: A:0.60, C:0.10, G:0.01, T:0.29
Consensus pattern (40 bp):
AAAAATATAAAACCTATAATTAACAATACAAAATATTCAC
Found at i:32829542 original size:15 final size:15
Alignment explanation
Indices: 32829522--32829551 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
32829512 TAGGTACCTG
32829522 TATCACTCACGACAC
1 TATCACTCACGACAC
32829537 TATCACTCACGACAC
1 TATCACTCACGACAC
32829552 GGTTATACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.40, G:0.07, T:0.20
Consensus pattern (15 bp):
TATCACTCACGACAC
Found at i:32829833 original size:46 final size:46
Alignment explanation
Indices: 32829659--32829870 Score: 168
Period size: 46 Copynumber: 4.5 Consensus size: 46
32829649 GCCGATGCCG
* * * *
32829659 TGTCCCAGACACGGTCTTACACTAG-TTTGTATCTCAAGTCGA-AGCCA
1 TGTCCCAGACATGGTCTTACACTAGACTT-CATCTCAAGCCGATA--CA
* **
32829706 TGTCCCAGACATGGTCTTACACT-GACTATCATCTCGTAGCCGACGCA
1 TGTCCCAGACATGGTCTTACACTAGACT-TCATCTC-AAGCCGATACA
* *
32829753 TGTCCTAGACAT-GTCTTACACTAG-CTTACGTCTCAAGGCCGATACA
1 TGTCCCAGACATGGTCTTACACTAGACTT-CATCTCAA-GCCGATACA
* ** *
32829799 TGTCTCAGACAT-GTCTTACACTAGAAC-TCATCTCAATGTTGATGCCA
1 TGTCCCAGACATGGTCTTACACTAG-ACTTCATCTCAA-GCCGAT-ACA
32829846 TGTCCCAGACATGGTCTTACACTAG
1 TGTCCCAGACATGGTCTTACACTAG
32829871 CTCTCACAAA
Statistics
Matches: 135, Mismatches: 19, Indels: 21
0.77 0.11 0.12
Matches are distributed among these distances:
45 2 0.01
46 58 0.43
47 56 0.41
48 19 0.14
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.28
Consensus pattern (46 bp):
TGTCCCAGACATGGTCTTACACTAGACTTCATCTCAAGCCGATACA
Found at i:32832235 original size:17 final size:18
Alignment explanation
Indices: 32832213--32832247 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
32832203 TTACATTGAA
32832213 GTGTTTT-AGTGAAAACC
1 GTGTTTTCAGTGAAAACC
*
32832230 GTGTTTTCATTGAAAACC
1 GTGTTTTCAGTGAAAACC
32832248 CTTCTTAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37
Consensus pattern (18 bp):
GTGTTTTCAGTGAAAACC
Found at i:32840405 original size:30 final size:30
Alignment explanation
Indices: 32840371--32840452 Score: 130
Period size: 30 Copynumber: 2.8 Consensus size: 30
32840361 ACATGGTCCA
32840371 TTAGGCCCAAATCACATTTATATGGCCCCC
1 TTAGGCCCAAATCACATTTATATGGCCCCC
* *
32840401 TTAGGCCCAAATCATATTTATATGGCCCCT
1 TTAGGCCCAAATCACATTTATATGGCCCCC
*
32840431 TTAGGCCCAAAT-ACAATTATAT
1 TTAGGCCCAAATCACATTTATAT
32840453 TCATACCCAC
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
29 8 0.17
30 40 0.83
ACGTcount: A:0.30, C:0.27, G:0.12, T:0.30
Consensus pattern (30 bp):
TTAGGCCCAAATCACATTTATATGGCCCCC
Found at i:32844845 original size:30 final size:30
Alignment explanation
Indices: 32844798--32844886 Score: 137
Period size: 30 Copynumber: 3.0 Consensus size: 30
32844788 TTATGTTCAC
*
32844798 ATGGCCCATTT-GGCCCAAATCACATTTAT
1 ATGGCCCCTTTAGGCCCAAATCACATTTAT
*
32844827 ATGGCCCCTTTAGGCCCAAATCATATTTAT
1 ATGGCCCCTTTAGGCCCAAATCACATTTAT
*
32844857 ATGGCCCCTTTAGGCCCAAATC-CAATTAT
1 ATGGCCCCTTTAGGCCCAAATCACATTTAT
32844886 A
1 A
32844887 CTCATGCCCA
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
29 16 0.29
30 39 0.71
ACGTcount: A:0.28, C:0.28, G:0.13, T:0.30
Consensus pattern (30 bp):
ATGGCCCCTTTAGGCCCAAATCACATTTAT
Found at i:32851533 original size:47 final size:45
Alignment explanation
Indices: 32851476--32851626 Score: 126
Period size: 47 Copynumber: 3.2 Consensus size: 45
32851466 TCCCAAACAC
32851476 GGTCTTACACTGGCTTATATCTCAAGTCGAAGCCATGTCCTAGACAA
1 GGTCTTACACTGGCTTATATCTCAAG-CGAAG-CATGTCCTAGACAA
* * * *
32851523 GGTCTTACACTGAC-TATCATCTCGTAGCTGACGCATGTCCCAGAC-A
1 GGTCTTACACTGGCTTAT-ATCTC-AAGC-GAAGCATGTCCTAGACAA
* * * * * * *
32851569 TGTCTTACACTGGCTTACATCTCGAGGCCAATTCATGTCCTAGATAT
1 GGTCTTACACTGGCTTATATCTC-AAGCGAA-GCATGTCCTAGACAA
32851616 GGTCTTACACT
1 GGTCTTACACT
32851627 AGCTCTCACA
Statistics
Matches: 82, Mismatches: 16, Indels: 12
0.75 0.15 0.11
Matches are distributed among these distances:
45 1 0.01
46 34 0.41
47 42 0.51
48 5 0.06
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.30
Consensus pattern (45 bp):
GGTCTTACACTGGCTTATATCTCAAGCGAAGCATGTCCTAGACAA
Found at i:32851591 original size:46 final size:48
Alignment explanation
Indices: 32851464--32851593 Score: 135
Period size: 47 Copynumber: 2.8 Consensus size: 48
32851454 GCCGATGCCG
* * *
32851464 TGTCCCAAACACGGTCTTACACTGGCTTATATCTC-AAGTCGAAGCCA
1 TGTCCCAGACAAGGTCTTACACTGGCTTACATCTCGAAGTCGAAGCCA
* * * *
32851511 TGTCCTAGACAAGGTCTTACACTGAC-TATCATCTCGTAG-CTGACG-CA
1 TGTCCCAGACAAGGTCTTACACTGGCTTA-CATCTCGAAGTC-GAAGCCA
*
32851558 TGTCCCAGAC-ATGTCTTACACTGGCTTACATCTCGA
1 TGTCCCAGACAAGGTCTTACACTGGCTTACATCTCGA
32851594 GGCCAATTCA
Statistics
Matches: 68, Mismatches: 11, Indels: 9
0.77 0.12 0.10
Matches are distributed among these distances:
46 22 0.32
47 41 0.60
48 5 0.07
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (48 bp):
TGTCCCAGACAAGGTCTTACACTGGCTTACATCTCGAAGTCGAAGCCA
Found at i:32854849 original size:25 final size:25
Alignment explanation
Indices: 32854815--32854865 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
32854805 GGAGAAGAAG
32854815 ATCCCTTGTTATTCGTGTACAATCT
1 ATCCCTTGTTATTCGTGTACAATCT
* *
32854840 ATCCCTTGTTCTTCGTGTAGAATCT
1 ATCCCTTGTTATTCGTGTACAATCT
32854865 A
1 A
32854866 GAGTCTAGAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.20, C:0.24, G:0.14, T:0.43
Consensus pattern (25 bp):
ATCCCTTGTTATTCGTGTACAATCT
Found at i:32858310 original size:42 final size:44
Alignment explanation
Indices: 32858217--32858311 Score: 115
Period size: 44 Copynumber: 2.2 Consensus size: 44
32858207 TGTGTTATCA
* *
32858217 TGTAAGACCACGTCTAGGATGTTGGCATCAACTTCTGATTTACG
1 TGTAAGACCACGTCTAGGACGTTGACATCAACTTCTGATTTACG
* * *
32858261 TGTAAGACCATGTCTGGGACGTTGACATCGTAC-T-TGATTT-CG
1 TGTAAGACCACGTCTAGGACGTTGACATC-AACTTCTGATTTACG
32858303 TGTAAGACC
1 TGTAAGACC
32858312 CTATTTGGGA
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
42 11 0.24
43 6 0.13
44 26 0.58
45 2 0.04
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (44 bp):
TGTAAGACCACGTCTAGGACGTTGACATCAACTTCTGATTTACG
Found at i:32860019 original size:26 final size:26
Alignment explanation
Indices: 32859973--32860025 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
32859963 TGAAACATGC
*
32859973 ATTTAGGTCAATTTAACCCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAAGGGT
* *
32859999 ATTTTGGT-AATTTATCTCCTAAGGGT
1 ATTTAGGTCAATTTAAC-CCTAAGGGT
32860025 A
1 A
32860026 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.13, G:0.21, T:0.40
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAAGGGT
Found at i:32861529 original size:26 final size:26
Alignment explanation
Indices: 32861500--32861607 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
32861490 TGAAATGCCC
* * *
32861500 ATCATGAAAAATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
32861526 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
32861552 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
32861578 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
32861604 ATCA
1 ATCA
32861608 ATTTTTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.38, C:0.23, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:32861577 original size:52 final size:52
Alignment explanation
Indices: 32861500--32861607 Score: 189
Period size: 52 Copynumber: 2.1 Consensus size: 52
32861490 TGAAATGCCC
32861500 ATCATGAAAAATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGAAAAATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
* * *
32861552 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGAAAAATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
32861604 ATCA
1 ATCA
32861608 ATTTTTACCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.38, C:0.23, G:0.06, T:0.32
Consensus pattern (52 bp):
ATCATGAAAAATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
Found at i:32863758 original size:19 final size:17
Alignment explanation
Indices: 32863734--32863782 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 17
32863724 TTCTTATGAT
32863734 TTTTTTGTTTGATTTGTGC
1 TTTTTTGTTT--TTTGTGC
*
32863753 TTTTTTGTCTTTTGTGC
1 TTTTTTGTTTTTTGTGC
32863770 TTACTTTTGTTTT
1 TT--TTTTGTTTT
32863783 AATTCAGGAC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
17 9 0.35
19 17 0.65
ACGTcount: A:0.04, C:0.08, G:0.16, T:0.71
Consensus pattern (17 bp):
TTTTTTGTTTTTTGTGC
Found at i:32865256 original size:37 final size:37
Alignment explanation
Indices: 32865206--32865281 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
32865196 AACAGTATGG
32865206 CCCAATTTGAATGCATTGGAGCACCGATCACTGCTTT
1 CCCAATTTGAATGCATTGGAGCACCGATCACTGCTTT
32865243 CCCAATTTGAATGCATTGGAGCACCGATCACTGCTTT
1 CCCAATTTGAATGCATTGGAGCACCGATCACTGCTTT
32865280 CC
1 CC
32865282 TAAGTAGAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (37 bp):
CCCAATTTGAATGCATTGGAGCACCGATCACTGCTTT
Found at i:32865292 original size:37 final size:37
Alignment explanation
Indices: 32865214--32865292 Score: 131
Period size: 37 Copynumber: 2.1 Consensus size: 37
32865204 GGCCCAATTT
* *
32865214 GAATGCATTGGAGCACCGATCACTGCTTTCCCAATTT
1 GAATGCATTGGAGCACCGATCACTGCTTTCCCAAGTA
*
32865251 GAATGCATTGGAGCACCGATCACTGCTTTCCTAAGTA
1 GAATGCATTGGAGCACCGATCACTGCTTTCCCAAGTA
32865288 GAATG
1 GAATG
32865293 ATCCATTGTT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.28
Consensus pattern (37 bp):
GAATGCATTGGAGCACCGATCACTGCTTTCCCAAGTA
Found at i:32868071 original size:32 final size:32
Alignment explanation
Indices: 32868030--32868093 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
32868020 ACAGAATTAT
32868030 ATGCTAGTTTTATCAACTTTAAAGATCTCCCA
1 ATGCTAGTTTTATCAACTTTAAAGATCTCCCA
*
32868062 ATGCTAGTTTTATCAATTTTAAAGATCTCCCA
1 ATGCTAGTTTTATCAACTTTAAAGATCTCCCA
32868094 TGTAAATTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.31, C:0.20, G:0.09, T:0.39
Consensus pattern (32 bp):
ATGCTAGTTTTATCAACTTTAAAGATCTCCCA
Found at i:32872088 original size:19 final size:19
Alignment explanation
Indices: 32872064--32872161 Score: 137
Period size: 19 Copynumber: 5.2 Consensus size: 19
32872054 AATCTTTAAG
32872064 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* *
32872083 GATATGCAATATCAGATAT
1 GATATGCAATCTTAGATAT
32872102 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
32872119 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
32872138 GATATACAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
32872159 GAT
1 GAT
32872162 CTTGTAAACT
Statistics
Matches: 70, Mismatches: 5, Indels: 6
0.86 0.06 0.07
Matches are distributed among these distances:
17 15 0.21
19 46 0.66
21 9 0.13
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:32872111 original size:36 final size:37
Alignment explanation
Indices: 32872070--32872161 Score: 132
Period size: 36 Copynumber: 2.4 Consensus size: 37
32872060 TAAGGATATG
32872070 CAATCTTAGATATGATATGCAATATCAGATATG-ATA
1 CAATCTTAGATATGATATGCAATATCAGATATGAATA
* *
32872106 CAATCTTAGATATGATATGCAATCTTAGATATGATATA
1 CAATCTTAGATATGATATGCAATATCAGATATGA-ATA
32872144 CAATCTTGAAGATATGAT
1 CAATCTT--AGATATGAT
32872162 CTTGTAAACT
Statistics
Matches: 50, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
36 31 0.62
38 10 0.20
40 9 0.18
ACGTcount: A:0.40, C:0.11, G:0.14, T:0.35
Consensus pattern (37 bp):
CAATCTTAGATATGATATGCAATATCAGATATGAATA
Found at i:32874732 original size:40 final size:40
Alignment explanation
Indices: 32874673--32874820 Score: 188
Period size: 40 Copynumber: 3.7 Consensus size: 40
32874663 AACTTTAGTG
** *
32874673 GCATTAGCGGCGCTTTTTGAAAAACGATGCTATAGTTTGA
1 GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATTGA
* * * *
32874713 GCACTAGCGGCGCTTTTTGAAAATCGCCGTTATAGATCGA
1 GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATTGA
* * * *
32874753 GCATTAGCGGCACTTTCTGAAAATCGCCGCTATAGGTTGA
1 GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATTGA
*
32874793 CCATTAGCGGCGCTTTTTGAAAAACGCC
1 GCATTAGCGGCGCTTTTTGAAAAACGCC
32874821 ACAAAAAATT
Statistics
Matches: 91, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 91 1.00
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (40 bp):
GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATTGA
Found at i:32874806 original size:80 final size:80
Alignment explanation
Indices: 32874673--32874820 Score: 215
Period size: 80 Copynumber: 1.9 Consensus size: 80
32874663 AACTTTAGTG
* * * * * *
32874673 GCATTAGCGGCGCTTTTTGAAAAACGATGCTATAGTTTGAGCACTAGCGGCGCTTTTTGAAAATC
1 GCATTAGCGGCACTTTCTGAAAAACGACGCTATAGGTTGACCACTAGCGGCGCTTTTTGAAAAAC
32874738 GCCGTTATAGATCGA
66 GCCGTTATAGATCGA
* * *
32874753 GCATTAGCGGCACTTTCTGAAAATCGCCGCTATAGGTTGACCATTAGCGGCGCTTTTTGAAAAAC
1 GCATTAGCGGCACTTTCTGAAAAACGACGCTATAGGTTGACCACTAGCGGCGCTTTTTGAAAAAC
32874818 GCC
66 GCC
32874821 ACAAAAAATT
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
80 59 1.00
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (80 bp):
GCATTAGCGGCACTTTCTGAAAAACGACGCTATAGGTTGACCACTAGCGGCGCTTTTTGAAAAAC
GCCGTTATAGATCGA
Found at i:32875261 original size:14 final size:14
Alignment explanation
Indices: 32875238--32875282 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
32875228 TTAATTATCA
* *
32875238 TTATATTTTAGGGT
1 TTATAGTTTAAGGT
*
32875252 TTATGGTTTAAGGT
1 TTATAGTTTAAGGT
*
32875266 ATATAGTTTAAGGT
1 TTATAGTTTAAGGT
32875280 TTA
1 TTA
32875283 AGATTTAGGA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.27, C:0.00, G:0.22, T:0.51
Consensus pattern (14 bp):
TTATAGTTTAAGGT
Found at i:32875351 original size:21 final size:20
Alignment explanation
Indices: 32875301--32875353 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 20
32875291 GAGGTACTAT
*
32875301 TTTAAGGTTTATGATTATGA
1 TTTATGGTTTATGATTATGA
* *
32875321 ATTATGGGTTTAGTGATTATGG
1 TTTAT-GGTTTA-TGATTATGA
32875343 TTTATGGTTTA
1 TTTATGGTTTA
32875354 AGGGTTGGGG
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 3 0.11
21 12 0.44
22 12 0.44
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.51
Consensus pattern (20 bp):
TTTATGGTTTATGATTATGA
Found at i:32875365 original size:21 final size:22
Alignment explanation
Indices: 32875341--32875461 Score: 83
Period size: 21 Copynumber: 5.6 Consensus size: 22
32875331 TAGTGATTAT
*
32875341 GGTTTATGGTTTAAGG-GTT-GG
1 GGTTTAAGGTTT-AGGTGTTAGG
32875362 GGTTTAAGGTTTAGGTGTTAGG
1 GGTTTAAGGTTTAGGTGTTAGG
* *
32875384 GG-TTAAGGGTTAGGGGTTTA-G
1 GGTTTAAGGTTTAGGTG-TTAGG
* * * *
32875405 GGTTTATGTTTTATGAT-TTA-A
1 GGTTTAAGGTTTA-GGTGTTAGG
** *
32875426 GGTTTAAGGGATAGGTGTTAAG
1 GGTTTAAGGTTTAGGTGTTAGG
32875448 GGTTTAAGGTTTAG
1 GGTTTAAGGTTTAG
32875462 ATTAATTAGT
Statistics
Matches: 76, Mismatches: 17, Indels: 13
0.72 0.16 0.12
Matches are distributed among these distances:
20 5 0.07
21 44 0.58
22 26 0.34
23 1 0.01
ACGTcount: A:0.21, C:0.00, G:0.38, T:0.41
Consensus pattern (22 bp):
GGTTTAAGGTTTAGGTGTTAGG
Found at i:32875456 original size:8 final size:7
Alignment explanation
Indices: 32875341--32875460 Score: 55
Period size: 7 Copynumber: 16.9 Consensus size: 7
32875331 TAGTGATTAT
*
32875341 GGTTTAT
1 GGTTTAA
32875348 GGTTTAA
1 GGTTTAA
* **
32875355 GGGTTGG
1 GGTTTAA
32875362 GGTTTAA
1 GGTTTAA
32875369 GGTTT-A
1 GGTTTAA
*
32875375 GGTGTTAG
1 GGT-TTAA
*
32875383 GGGTTAA
1 GGTTTAA
* *
32875390 GGGTTAGG
1 GGTTTA-A
*
32875398 GGTTTAG
1 GGTTTAA
*
32875405 GGTTTAT
1 GGTTTAA
* *
32875412 GTTTTAT
1 GGTTTAA
*
32875419 GATTTAA
1 GGTTTAA
32875426 GGTTTAA
1 GGTTTAA
**
32875433 GGGAT-A
1 GGTTTAA
32875439 GGTGTTAA
1 GGT-TTAA
32875447 GGGTTTAA
1 -GGTTTAA
32875455 GGTTTA
1 GGTTTA
32875461 GATTAATTAG
Statistics
Matches: 86, Mismatches: 21, Indels: 12
0.72 0.18 0.10
Matches are distributed among these distances:
6 7 0.08
7 64 0.74
8 12 0.14
9 3 0.03
ACGTcount: A:0.21, C:0.00, G:0.38, T:0.42
Consensus pattern (7 bp):
GGTTTAA
Found at i:32876071 original size:18 final size:18
Alignment explanation
Indices: 32876020--32876073 Score: 81
Period size: 18 Copynumber: 3.0 Consensus size: 18
32876010 CTCTCCCCCC
*
32876020 ATTCCCTTTTCTTTCCCA
1 ATTCCCTTTTCTTTCTCA
* *
32876038 ATTTCCTTTTCTTTCTGA
1 ATTCCCTTTTCTTTCTCA
32876056 ATTCCCTTTTCTTTCTCA
1 ATTCCCTTTTCTTTCTCA
32876074 GCCTTTCTCA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.11, C:0.31, G:0.02, T:0.56
Consensus pattern (18 bp):
ATTCCCTTTTCTTTCTCA
Found at i:32878943 original size:15 final size:16
Alignment explanation
Indices: 32878925--32878955 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
32878915 GTTTTTGTCT
32878925 TATATATGAT-TAAAA
1 TATATATGATCTAAAA
32878940 TATATATGATCTAAAA
1 TATATATGATCTAAAA
32878956 GCAAGAGAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.52, C:0.03, G:0.06, T:0.39
Consensus pattern (16 bp):
TATATATGATCTAAAA
Found at i:32883631 original size:31 final size:31
Alignment explanation
Indices: 32883583--32883667 Score: 111
Period size: 31 Copynumber: 2.8 Consensus size: 31
32883573 TCAATCTCAG
32883583 CATAT-ACTGGGCCGAAGCCTTTACATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
* ** *
32883613 CATGTCACTGGGTTGAAGCCTCTT-CTTTATT
1 CATATCACTGGGCCGAAGCCT-TTACATTATT
32883644 CATATCACTGGGCCGAAGCCTTTA
1 CATATCACTGGGCCGAAGCCTTTA
32883668 TTGTAAATGA
Statistics
Matches: 45, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
30 6 0.13
31 37 0.82
32 2 0.04
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.34
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTACATTATT
Found at i:32883924 original size:25 final size:25
Alignment explanation
Indices: 32883887--32883955 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
32883877 CTCTTTTAAT
*
32883887 AACTA-GGCAAAGCCCTTTTTGATA
1 AACTAGGGCAAAGCCCTTTTCGATA
*
32883911 AACTAGGGCAAAGCCCTTTTCGGTA
1 AACTAGGGCAAAGCCCTTTTCGATA
* *
32883936 AACTGGGGCATAGCCCTTTT
1 AACTAGGGCAAAGCCCTTTT
32883956 GCACTTCCTC
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
24 5 0.12
25 35 0.88
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.28
Consensus pattern (25 bp):
AACTAGGGCAAAGCCCTTTTCGATA
Found at i:32883930 original size:24 final size:24
Alignment explanation
Indices: 32883874--32883956 Score: 89
Period size: 25 Copynumber: 3.4 Consensus size: 24
32883864 CTGGAGGCCT
*
32883874 AGCCTCTTTTAAT-AACTA-GGCAA
1 AGCC-CTTTTGATAAACTAGGGCAA
32883897 AGCCCTTTTTGATAAACTAGGGCAA
1 AGCCC-TTTTGATAAACTAGGGCAA
* * *
32883922 AGCCCTTTTCGGTAAACTGGGGCAT
1 AGCCCTTTT-GATAAACTAGGGCAA
32883947 AGCCCTTTTG
1 AGCCCTTTTG
32883957 CACTTCCTCC
Statistics
Matches: 52, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
22 1 0.02
23 10 0.19
24 10 0.19
25 31 0.60
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTGATAAACTAGGGCAA
Found at i:32884425 original size:20 final size:21
Alignment explanation
Indices: 32884400--32884439 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
32884390 TGGGCCTGAA
*
32884400 AGCCCATTG-GGCCCAATTTC
1 AGCCCATCGAGGCCCAATTTC
32884420 AGCCCATCGAGGCCCAATTT
1 AGCCCATCGAGGCCCAATTT
32884440 ACCGTGATGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.23, C:0.35, G:0.20, T:0.23
Consensus pattern (21 bp):
AGCCCATCGAGGCCCAATTTC
Found at i:32886237 original size:17 final size:17
Alignment explanation
Indices: 32886215--32886250 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
32886205 CTGCTATAAG
*
32886215 TATGTTTAATATTCGGC
1 TATGTTTAATATTCAGC
32886232 TATGTTTAATATTCAGC
1 TATGTTTAATATTCAGC
32886249 TA
1 TA
32886251 GGCTTGGGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.28, C:0.11, G:0.14, T:0.47
Consensus pattern (17 bp):
TATGTTTAATATTCAGC
Found at i:32889245 original size:27 final size:27
Alignment explanation
Indices: 32889215--32889303 Score: 83
Period size: 27 Copynumber: 3.3 Consensus size: 27
32889205 TCAGTTTACT
32889215 AAAATTA-TCGAAATACCCTTAG-TTTGA
1 AAAATTACT-GAAATACCC-TAGATTTGA
* * *
32889242 AAAAATACTGAAATACCCTCGATTTGT
1 AAAATTACTGAAATACCCTAGATTTGA
* * * *
32889269 AAAATTACTGAAATACCTTCGACTTGT
1 AAAATTACTGAAATACCCTAGATTTGA
32889296 AAAATTAC
1 AAAATTAC
32889304 CAAAGTAATC
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
26 2 0.04
27 51 0.94
28 1 0.02
ACGTcount: A:0.42, C:0.17, G:0.10, T:0.31
Consensus pattern (27 bp):
AAAATTACTGAAATACCCTAGATTTGA
Found at i:32889346 original size:27 final size:27
Alignment explanation
Indices: 32889316--32889498 Score: 204
Period size: 27 Copynumber: 6.6 Consensus size: 27
32889306 AAGTAATCCT
*
32889316 GATTTACAGAATTACCGTTTTACCCCC
1 GATTTACAGAATTACCGTTTTACCCTC
*
32889343 GATTTACATAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* * *
32889370 GATTTACATAATTATCATTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* *
32889397 GACTTACGGTAATAGAATTACCATTTTACCCTC
1 GA-TT----T-ACAGAATTACCGTTTTACCCTC
* *
32889430 GATTTACAGAATTACTGTTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTC
* *
32889457 GATTTATAGAATTACTGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
*
32889484 GATTTACAAAATTAC
1 GATTTACAGAATTAC
32889499 TAAAATACCC
Statistics
Matches: 135, Mismatches: 15, Indels: 12
0.83 0.09 0.07
Matches are distributed among these distances:
27 108 0.80
28 3 0.02
32 3 0.02
33 21 0.16
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.39
Consensus pattern (27 bp):
GATTTACAGAATTACCGTTTTACCCTC
Found at i:32889427 original size:87 final size:87
Alignment explanation
Indices: 32889323--32889490 Score: 239
Period size: 87 Copynumber: 1.9 Consensus size: 87
32889313 CCTGATTTAC
* * *
32889323 AGAATTACCGTTTTACCCCCGATTTACATAATTACCGTTTTACCCTCGATTTACATAATTA-TCA
1 AGAATTACCATTTTACCCCCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACT-A
32889387 TTTTACCCTCGACTTACGGTAAT
65 TTTTACCCTCGACTTACGGTAAT
* * * * *
32889410 AGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTTGATTTATAGAATTACTGT
1 AGAATTACCATTTTACCCCCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACTAT
*
32889475 TTTACCCTCGATTTAC
66 TTTACCCTCGACTTAC
32889491 AAAATTACTA
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
87 70 0.99
88 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.10, T:0.40
Consensus pattern (87 bp):
AGAATTACCATTTTACCCCCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACTAT
TTTACCCTCGACTTACGGTAAT
Found at i:32889508 original size:54 final size:54
Alignment explanation
Indices: 32889408--32889527 Score: 150
Period size: 54 Copynumber: 2.2 Consensus size: 54
32889398 ACTTACGGTA
* ****
32889408 ATAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTTGATTT
1 ATAGAATTACCATTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGATTT
** *
32889462 ATAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTT
1 ATAGAATTACCATTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGATTT
* *
32889516 GTAAAATTACCA
1 ATAGAATTACCA
32889528 AAATACCCTT
Statistics
Matches: 54, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.33, C:0.19, G:0.09, T:0.39
Consensus pattern (54 bp):
ATAGAATTACCATTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGATTT
Found at i:32889706 original size:27 final size:27
Alignment explanation
Indices: 32889423--32889702 Score: 152
Period size: 27 Copynumber: 10.3 Consensus size: 27
32889413 ATTACCATTT
* * ***
32889423 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTTGATTTACAAAATTACTGAAA
* * ***
32889450 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTTGATTTACAAAATTACTGAAA
* *
32889477 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACTGAAA
* ** **
32889504 TACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACTGAAA
** **
32889531 TACCCTT-AGTTTGTAAAATTACCAAAA
1 TACCCTTGA-TTTACAAAATTACTGAAA
* * ***
32889558 TACCTTTGGTTTGTGAAATTACTGAAA
1 TACCCTTGATTTACAAAATTACTGAAA
** ** **
32889585 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACTGAAA
* * * *
32889612 TACCCCTAATTTACAAAGTTACAGAAA
1 TACCCTTGATTTACAAAATTACTGAAA
32889639 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTTGA-TTTAC--AAAATTACT-GAAA
* *
32889668 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGATTTACAAAATTACTGAAA
32889695 TACCCTTG
1 TACCCTTG
32889703 GTTTGTAGAT
Statistics
Matches: 204, Mismatches: 41, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
27 179 0.88
28 7 0.03
29 18 0.09
ACGTcount: A:0.37, C:0.19, G:0.09, T:0.35
Consensus pattern (27 bp):
TACCCTTGATTTACAAAATTACTGAAA
Found at i:32889716 original size:27 final size:27
Alignment explanation
Indices: 32889491--32889709 Score: 190
Period size: 27 Copynumber: 8.0 Consensus size: 27
32889481 CTCGATTTAC
32889491 AAAATTACTAAAATACCCTTGGTTTGT
1 AAAATTACTAAAATACCCTTGGTTTGT
* *
32889518 AAAATTACCAAAATACCCTTAGTTTGT
1 AAAATTACTAAAATACCCTTGGTTTGT
* *
32889545 AAAATTACCAAAATACCTTTGGTTTGT
1 AAAATTACTAAAATACCCTTGGTTTGT
* * ***
32889572 GAAATTACTGAAATACCCTCAATTTGT
1 AAAATTACTAAAATACCCTTGGTTTGT
* * ** **
32889599 AAAATTACCAAAATACCCCTAATTTAC
1 AAAATTACTAAAATACCCTTGGTTTGT
* * *
32889626 AAAGTTAC-AGAAATACCCTTGACTTTCT
1 AAAATTACTA-AAATACCCTTG-GTTTGT
* **
32889654 AAAAATTA-TAGAAATACCATTGGTTTAC
1 -AAAATTACTA-AAATACCCTTGGTTTGT
*
32889682 AAAATTACTGAAATACCCTTGGTTTGT
1 AAAATTACTAAAATACCCTTGGTTTGT
32889709 A
1 A
32889710 GATTTACCAA
Statistics
Matches: 154, Mismatches: 33, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
26 1 0.01
27 128 0.83
28 7 0.05
29 18 0.12
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (27 bp):
AAAATTACTAAAATACCCTTGGTTTGT
Found at i:32889795 original size:54 final size:54
Alignment explanation
Indices: 32889728--32889851 Score: 119
Period size: 54 Copynumber: 2.3 Consensus size: 54
32889718 AAAACACCTT
* * *
32889728 TGTAGGATGAAATGACT-AAAATACCCCTATTA-GGTAAAAAGACCGTAA-AGCCCC
1 TGTAGGGTAAAATGACTGAAAA-ACCCCT-GTAGGGTAAAAAGACCGTAATA-CCCC
* * * **
32889782 TGTAGGGTAAAATGGCTGTAAAGCCCCTGTAGGGTAAAGTGACCGTAATACCCC
1 TGTAGGGTAAAATGACTGAAAAACCCCTGTAGGGTAAAAAGACCGTAATACCCC
*
32889836 TGTATGGTAAAATGAC
1 TGTAGGGTAAAATGAC
32889852 GAATATGCCC
Statistics
Matches: 57, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
53 2 0.04
54 51 0.89
55 4 0.07
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (54 bp):
TGTAGGGTAAAATGACTGAAAAACCCCTGTAGGGTAAAAAGACCGTAATACCCC
Found at i:32889851 original size:27 final size:27
Alignment explanation
Indices: 32889760--32889851 Score: 123
Period size: 27 Copynumber: 3.4 Consensus size: 27
32889750 ACCCCTATTA
*
32889760 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
32889787 GGTAAAATGGCTGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
32889814 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
32889841 GGTAAAATGAC
1 GGTAAAATGAC
32889852 GAATATGCCC
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
27 55 0.98
28 1 0.02
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.21
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:32890681 original size:26 final size:26
Alignment explanation
Indices: 32890652--32890827 Score: 273
Period size: 26 Copynumber: 6.8 Consensus size: 26
32890642 GAGGAAGTGC
32890652 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
32890678 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
32890704 AAAAGGGCTTATGCCCCAGTTTACCA
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
32890730 AAAAGGGCTTATGCCCCAGTTTACCA
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
32890756 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* *
32890782 AAAAGGGCTTATGCTCCAGGTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
32890808 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
32890828 ATTAAAGAGG
Statistics
Matches: 136, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
25 8 0.06
26 128 0.94
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.26
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:32890781 original size:78 final size:78
Alignment explanation
Indices: 32890652--32890827 Score: 309
Period size: 78 Copynumber: 2.3 Consensus size: 78
32890642 GAGGAAGTGC
*
32890652 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATG
1 AAAAGGGCTTATGCCCCAGTTTACCAAAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATG
*
32890717 CCCCAGTTTACCA
66 CCCCAGGTTACCA
32890730 AAAAGGGCTTATGCCCCAGTTTACCAAAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATG
1 AAAAGGGCTTATGCCCCAGTTTACCAAAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATG
* *
32890795 CTCCAGGTTACCG
66 CCCCAGGTTACCA
32890808 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
32890828 ATTAAAGAGG
Statistics
Matches: 94, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
77 10 0.11
78 84 0.89
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.26
Consensus pattern (78 bp):
AAAAGGGCTTATGCCCCAGTTTACCAAAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATG
CCCCAGGTTACCA
Found at i:32891031 original size:42 final size:42
Alignment explanation
Indices: 32890972--32891063 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
32890962 TAGTCTCCCC
* ** * *
32890972 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTA
32891014 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTA
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTA
32891056 AAATGGGC
1 AAATGGGC
32891064 CTATGGGCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTA
Found at i:32891134 original size:31 final size:31
Alignment explanation
Indices: 32891087--32891194 Score: 125
Period size: 31 Copynumber: 3.5 Consensus size: 31
32891077 CGTTTACAGT
32891087 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
* * * *
32891118 AAATGCTTTGGCCCAGTGATATTATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
*
32891149 AAAGGCTTCGGCCCAGT--AATCG-TTAAATG-
1 AAAGGCTTCGGCCCAGTGAAAT-GATT-TATGA
32891178 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
32891195 ATATGTCAAG
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
29 21 0.32
30 3 0.05
31 42 0.64
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGAAATGATTTATGA
Found at i:32895259 original size:19 final size:19
Alignment explanation
Indices: 32895235--32895273 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
32895225 AAAACCAAAT
32895235 TAACATAAATTATCTAAAA
1 TAACATAAATTATCTAAAA
32895254 TAACATAAATTATCTAAAA
1 TAACATAAATTATCTAAAA
32895273 T
1 T
32895274 TAAGACAACC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.56, C:0.10, G:0.00, T:0.33
Consensus pattern (19 bp):
TAACATAAATTATCTAAAA
Found at i:32905406 original size:25 final size:25
Alignment explanation
Indices: 32905362--32905411 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
32905352 ATGACAACCA
* *
32905362 AATTTACATATACAATCATATTATAT
1 AATTTACATAAACAAACATA-TATAT
32905388 AATTTA-ATAAACAAACATATATAT
1 AATTTACATAAACAAACATATATAT
32905412 TTTCAATACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 5 0.23
25 11 0.50
26 6 0.27
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.38
Consensus pattern (25 bp):
AATTTACATAAACAAACATATATAT
Found at i:32911739 original size:48 final size:48
Alignment explanation
Indices: 32911648--32911739 Score: 148
Period size: 48 Copynumber: 1.9 Consensus size: 48
32911638 CATTAGGAAA
* **
32911648 TTCATTGATTTGGCTTCAGGCCATGATATTGGCACTTTGGGTGCGAGC
1 TTCATTGATTTGGCTTCAGGCCATGATATTAGCACTTCAGGTGCGAGC
*
32911696 TTCATTGATTTGGCTTTAGGCCATGATATTAGCACTTCAGGTGC
1 TTCATTGATTTGGCTTCAGGCCATGATATTAGCACTTCAGGTGC
32911740 AGGACACATT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.18, C:0.18, G:0.26, T:0.37
Consensus pattern (48 bp):
TTCATTGATTTGGCTTCAGGCCATGATATTAGCACTTCAGGTGCGAGC
Found at i:32911750 original size:48 final size:48
Alignment explanation
Indices: 32911650--32911778 Score: 138
Period size: 48 Copynumber: 2.7 Consensus size: 48
32911640 TTAGGAAATT
* ** *
32911650 CATTGATTTGGCTTCAGGCCATGATATTGGCACTTTGGGTGCGAGCTT
1 CATTGATTTGGCTTCAGGCCATGATATTAGCACTTCAGGTGCGAGCTA
*
32911698 CATTGATTTGGCTTTAGGCCATGATATTAGCACTTCAGGTGC-AGGAC-A
1 CATTGATTTGGCTTCAGGCCATGATATTAGCACTTCAGGTGCGA-G-CTA
* * *
32911746 CATTGAGTTGGCTTCGGGCCTTGAT-TTGAGCAC
1 CATTGATTTGGCTTCAGGCCATGATATT-AGCAC
32911779 ATTGTGTACG
Statistics
Matches: 69, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
47 3 0.04
48 65 0.94
49 1 0.01
ACGTcount: A:0.19, C:0.19, G:0.28, T:0.33
Consensus pattern (48 bp):
CATTGATTTGGCTTCAGGCCATGATATTAGCACTTCAGGTGCGAGCTA
Found at i:32921816 original size:9 final size:9
Alignment explanation
Indices: 32921802--32921835 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
32921792 TGAGTTTTAT
32921802 TGAATTTTG
1 TGAATTTTG
32921811 TGAATTTTG
1 TGAATTTTG
32921820 TGAATTTTG
1 TGAATTTTG
*
32921829 TGTATTT
1 TGAATTT
32921836 ATGAAATAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.21, C:0.00, G:0.21, T:0.59
Consensus pattern (9 bp):
TGAATTTTG
Found at i:32922280 original size:43 final size:43
Alignment explanation
Indices: 32922232--32922432 Score: 226
Period size: 43 Copynumber: 4.7 Consensus size: 43
32922222 GTTATCGAGA
*
32922232 TGTGATTACATGTAAGACCATGTCTGGGACATTGACATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGACATCGTAT
* *
32922275 TGTGATTACATTTAAGACCATGTCTGGGACATTGACATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGACATCGTAT
* * *
32922318 TGTGATTACGTGTAAGACCATATCTGGGACATTGGCATCGTTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGACATCG-TAT
*** * * * *
32922362 T-TGATTTTGTGCAAGACCCTGTCTGGGACAGTGGCATCG-AT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGACATCGTAT
* * *
32922403 ATGTGATAACATGTAAGATCATATCTGGGA
1 -TGTGATTACATGTAAGACCATGTCTGGGA
32922433 TATGGCATTG
Statistics
Matches: 135, Mismatches: 20, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
41 2 0.01
42 1 0.01
43 128 0.95
44 4 0.03
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.34
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGACATCGTAT
Found at i:32923814 original size:42 final size:42
Alignment explanation
Indices: 32923768--32923853 Score: 154
Period size: 42 Copynumber: 2.0 Consensus size: 42
32923758 GCTATATAAC
*
32923768 TTAGTAAGTCCATATGAAAATAATAAGAGATTTGTTGACATG
1 TTAGTAAGTCCATACGAAAATAATAAGAGATTTGTTGACATG
*
32923810 TTAGTAAGTCTATACGAAAATAATAAGAGATTTGTTGACATG
1 TTAGTAAGTCCATACGAAAATAATAAGAGATTTGTTGACATG
32923852 TT
1 TT
32923854 TATGTCATAT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.40, C:0.07, G:0.19, T:0.35
Consensus pattern (42 bp):
TTAGTAAGTCCATACGAAAATAATAAGAGATTTGTTGACATG
Found at i:32924876 original size:48 final size:47
Alignment explanation
Indices: 32924817--32925053 Score: 224
Period size: 48 Copynumber: 5.0 Consensus size: 47
32924807 GGGTAAATCA
* * * * *
32924817 CTGATGTCATGTCCCAGACATGGTCTTACATTGGCTCACATGTCGAGG
1 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATC-AGG
** * *
32924865 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTGTCTCAATG
1 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATC-AGG
* *
32924913 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACATGG
1 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCA-GG
* * * **
32924961 CCT-ATGCCATGTCCCAGACATGGTCTTACATTGGCTCTTATAATGTGG
1 -CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-ATCAGG
** * * * *
32925009 CCAATGCCATGTTCCAAACATGGTCTTACACTAGCACACATATCA
1 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCA
32925054 CCCAAATGTC
Statistics
Matches: 153, Mismatches: 32, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
47 4 0.03
48 147 0.96
49 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (47 bp):
CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAGG
Found at i:32924988 original size:96 final size:95
Alignment explanation
Indices: 32924819--32925050 Score: 265
Period size: 96 Copynumber: 2.4 Consensus size: 95
32924809 GTAAATCACT
* * * **
32924819 GATGTCATGTCCCAGACATGGTCTTACATTGGCTCACATGTCGAGGCTGATGCCATGTCCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAACGAGGCTGATGCCATGTCCCAGAC
*
32924884 ATGGTCTTACACTAGCTCTTGTCTCAA-T-GCC
66 ATGGTCTTACACTAGCTC-T-TAT-AAGTGGCC
*
32924915 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAC-ATGGCCT-ATGCCATGTCCCAG
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAACGA-GG-CTGATGCCATGTCCCAG
* *
32924978 ACATGGTCTTACATTGGCTCTTATAATGTGGCC
64 ACATGGTCTTACACTAGCTCTTATAA-GTGGCC
* * * *
32925011 AATGCCATGTTCCAAACATGGTCTTACACTAGCACACATA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATA
32925051 TCACCCAAAT
Statistics
Matches: 117, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
93 2 0.02
94 2 0.02
95 3 0.03
96 108 0.92
97 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (95 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAACGAGGCTGATGCCATGTCCCAGAC
ATGGTCTTACACTAGCTCTTATAAGTGGCC
Found at i:32925544 original size:70 final size:70
Alignment explanation
Indices: 32925438--32925705 Score: 430
Period size: 70 Copynumber: 3.8 Consensus size: 70
32925428 TTCCTTGATC
* * * *
32925438 TATAACAACA-CATTTTAATTAGCTAAACACCATGAATTTGTCCTAATTTGGACAGCCAATAATT
1 TATAACAGCAGCATATTAATTAGCTAAGCACCATGAATTTGTCCTAATTTGGATAGCCAATAATT
*
32925502 TACAA
66 TACAG
* *
32925507 TATTACAGCAGCATATTAATTAGCTAAGCACTATGAATTTGTCCTAATTTGGATAGCCAATAATT
1 TATAACAGCAGCATATTAATTAGCTAAGCACCATGAATTTGTCCTAATTTGGATAGCCAATAATT
*
32925572 TATAG
66 TACAG
* * *
32925577 TATAACAGCAGCATATAAATTAGCTAAGCACCATGAATTTGTCCTAATTTGGAGAACCAATAATT
1 TATAACAGCAGCATATTAATTAGCTAAGCACCATGAATTTGTCCTAATTTGGATAGCCAATAATT
32925642 TACAG
66 TACAG
32925647 TATAACAGCAGCATATTAATTAGCTAAGCACCATGAATTTGTCCTAATTTGGATAGCCA
1 TATAACAGCAGCATATTAATTAGCTAAGCACCATGAATTTGTCCTAATTTGGATAGCCA
32925706 TAAAAAATAA
Statistics
Matches: 181, Mismatches: 17, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
69 8 0.04
70 173 0.96
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.32
Consensus pattern (70 bp):
TATAACAGCAGCATATTAATTAGCTAAGCACCATGAATTTGTCCTAATTTGGATAGCCAATAATT
TACAG
Found at i:32929044 original size:38 final size:38
Alignment explanation
Indices: 32928993--32929069 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
32928983 GGTTTACACC
32928993 GCGATTTTGGAAGAAACTACAAAAAGCTCTTGGCACGA
1 GCGATTTTGGAAGAAACTACAAAAAGCTCTTGGCACGA
32929031 GCGATTTTGGAAGAAACTACAAAAAGCTCTTGGCACGA
1 GCGATTTTGGAAGAAACTACAAAAAGCTCTTGGCACGA
32929069 G
1 G
32929070 GTTGAATTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (38 bp):
GCGATTTTGGAAGAAACTACAAAAAGCTCTTGGCACGA
Found at i:32931134 original size:48 final size:48
Alignment explanation
Indices: 32931063--32931175 Score: 154
Period size: 48 Copynumber: 2.4 Consensus size: 48
32931053 CCTTAGGAAA
* *
32931063 TTCATTGATTTTGCTTCAGGCCATGATATTGGCACTTCGAGTGTGAGT
1 TTCATTGATTTGGCTTCAGGCCATGATATTAGCACTTCGAGTGTGAGT
* * * *
32931111 TTCATTGGTTTGGTTTCAGGCCATGATATTAGCATTTCGAGTGTGAGA
1 TTCATTGATTTGGCTTCAGGCCATGATATTAGCACTTCGAGTGTGAGT
* *
32931159 TACATTGAGTTGGCTTC
1 TTCATTGATTTGGCTTC
32931176 GGGTTATTAT
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 55 1.00
ACGTcount: A:0.19, C:0.15, G:0.26, T:0.40
Consensus pattern (48 bp):
TTCATTGATTTGGCTTCAGGCCATGATATTAGCACTTCGAGTGTGAGT
Found at i:32933901 original size:43 final size:44
Alignment explanation
Indices: 32933853--32934056 Score: 235
Period size: 44 Copynumber: 4.7 Consensus size: 44
32933843 AGCTCGTATA
*
32933853 ATGCCAACGTCCCAGACGTGGTCTTACATGTAA-TCA-AATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAGTCATAA-ATCG
* *
32933896 ATGCC-ACTGTCCCAGATAG-GGTCTTACACGTAAGTCATAAGTCG
1 ATGCCAAC-GTCCCAGA-CGTGGTCTTACACGTAAGTCATAAATCG
*
32933940 ATGCCAACGTCCCAGACGTGGTCTTACATGTAA-TCA-AATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAGTCATAA-ATCG
*
32933983 ATGCC-ACTGTCCCAGACAG-GGTCTTACACGTAAGTCATAAATTG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAAGTCATAAATCG
* *
32934027 ATGCCAACGTCCCAAACGTGGTCGTACACG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG
32934057 ATAACACATA
Statistics
Matches: 138, Mismatches: 10, Indels: 25
0.80 0.06 0.14
Matches are distributed among these distances:
42 6 0.04
43 61 0.44
44 63 0.46
45 8 0.06
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAAGTCATAAATCG
Found at i:32933954 original size:44 final size:43
Alignment explanation
Indices: 32933853--32934069 Score: 216
Period size: 43 Copynumber: 5.0 Consensus size: 43
32933843 AGCTCGTATA
* *
32933853 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGAAGTGGTCTTACACGTAATCAAATATCG
*
32933896 ATGCC-ACTGTCCCAGATAG-GGTCTTACACGTAAGTCATAA-GTCG
1 ATGCCAAC-GTCCCAGA-AGTGGTCTTACACGTAA-TCA-AATATCG
* *
32933940 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGAAGTGGTCTTACACGTAATCAAATATCG
*
32933983 ATGCC-ACTGTCCCAGACAG-GGTCTTACACGTAAGTCATAA-ATTG
1 ATGCCAAC-GTCCCAGA-AGTGGTCTTACACGTAA-TCA-AATATCG
* *
32934027 ATGCCAACGTCCCA-AACGTGGTCGTACACGATAA-CACATATCG
1 ATGCCAACGTCCCAGAA-GTGGTCTTACACG-TAATCAAATATCG
32934070 GATCCTATGT
Statistics
Matches: 146, Mismatches: 12, Indels: 32
0.77 0.06 0.17
Matches are distributed among these distances:
42 8 0.05
43 66 0.45
44 61 0.42
45 11 0.08
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAGAAGTGGTCTTACACGTAATCAAATATCG
Found at i:32934069 original size:87 final size:87
Alignment explanation
Indices: 32933853--32934054 Score: 359
Period size: 87 Copynumber: 2.3 Consensus size: 87
32933843 AGCTCGTATA
*
32933853 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGATAGGGT
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAGGGT
*
32933918 CTTACACGTAAGTCATAAGTCG
66 CTTACACGTAAGTCATAAATCG
32933940 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAGGGT
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAGGGT
*
32934005 CTTACACGTAAGTCATAAATTG
66 CTTACACGTAAGTCATAAATCG
* *
32934027 ATGCCAACGTCCCAAACGTGGTCGTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
32934055 CGATAACACA
Statistics
Matches: 110, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
87 110 1.00
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.24
Consensus pattern (87 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAGGGT
CTTACACGTAAGTCATAAATCG
Found at i:32936530 original size:15 final size:16
Alignment explanation
Indices: 32936510--32936542 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
32936500 ATATATATTT
32936510 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
32936525 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
32936542 T
1 T
32936543 ATAACCATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:32936600 original size:35 final size:33
Alignment explanation
Indices: 32936554--32936618 Score: 87
Period size: 35 Copynumber: 1.9 Consensus size: 33
32936544 TAACCATTTT
32936554 TTATTATATTATTAATTTGTGTATT-GTTTTAAGAA
1 TTATTATATTATT-ATTT-T-TATTAGTTTTAAGAA
*
32936589 TTATTTTATTATTATTTTTATTAGTTTTAA
1 TTATTATATTATTATTTTTATTAGTTTTAA
32936619 TATTTGTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
32 4 0.14
33 8 0.29
34 4 0.14
35 12 0.43
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.63
Consensus pattern (33 bp):
TTATTATATTATTATTTTTATTAGTTTTAAGAA
Found at i:32936662 original size:26 final size:25
Alignment explanation
Indices: 32936621--32936678 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 25
32936611 AGTTTTAATA
*
32936621 TTTG-TTT-TTATGTTTTTAAATATT
1 TTTGATTTATTATATTTTTAAAT-TT
32936645 TTTGATTTATTATATTTTTAAATTT
1 TTTGATTTATTATATTTTTAAATTT
*
32936670 TTTTATTTA
1 TTTGATTTA
32936679 ATGAAATAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
24 4 0.13
25 13 0.43
26 13 0.43
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (25 bp):
TTTGATTTATTATATTTTTAAATTT
Found at i:32944775 original size:36 final size:36
Alignment explanation
Indices: 32944735--32944807 Score: 101
Period size: 36 Copynumber: 2.0 Consensus size: 36
32944725 GAAAATCAAT
*
32944735 CATTTTACCTTACACGGGTATTACAGTCATTTTACC
1 CATTTTACCCTACACGGGTATTACAGTCATTTTACC
* * * *
32944771 CATTTTGCCCTATAGGGGTATTTCAGTCATTTTACC
1 CATTTTACCCTACACGGGTATTACAGTCATTTTACC
32944807 C
1 C
32944808 TATAGGGTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.22, C:0.25, G:0.14, T:0.40
Consensus pattern (36 bp):
CATTTTACCCTACACGGGTATTACAGTCATTTTACC
Found at i:32944793 original size:27 final size:26
Alignment explanation
Indices: 32944763--32944820 Score: 71
Period size: 27 Copynumber: 2.2 Consensus size: 26
32944753 TATTACAGTC
* *
32944763 ATTTTACCCATTTTGCCCTATAGGGGT
1 ATTTCACCCATTTTACCCTATA-GGGT
**
32944790 ATTTCAGTCATTTTACCCTATAGGGT
1 ATTTCACCCATTTTACCCTATAGGGT
32944816 ATTTC
1 ATTTC
32944821 GGTCACCATT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 9 0.33
27 18 0.67
ACGTcount: A:0.21, C:0.21, G:0.16, T:0.43
Consensus pattern (26 bp):
ATTTCACCCATTTTACCCTATAGGGT
Found at i:32944825 original size:26 final size:27
Alignment explanation
Indices: 32944771--32944825 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 27
32944761 TCATTTTACC
*
32944771 CATTTTGCCCTATAGGGGTATTTCAGT
1 CATTTTACCCTATAGGGGTATTTCAGT
*
32944798 CATTTTACCCTATA-GGGTATTTCGGT
1 CATTTTACCCTATAGGGGTATTTCAGT
32944824 CA
1 CA
32944826 CCATTTCGGC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 13 0.50
27 13 0.50
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.40
Consensus pattern (27 bp):
CATTTTACCCTATAGGGGTATTTCAGT
Found at i:32945246 original size:27 final size:27
Alignment explanation
Indices: 32945216--32945306 Score: 146
Period size: 27 Copynumber: 3.4 Consensus size: 27
32945206 GGGTAAAATG
*
32945216 GGTAAAATGACTGTAATACCCCTGTAG
1 GGTAAAATGACTGTAATACCCCTGTAA
*
32945243 GGTAAAATGACTATAATACCCCTGTAA
1 GGTAAAATGACTGTAATACCCCTGTAA
* *
32945270 GGTAACATGACTGTAATACCTCTGTAA
1 GGTAAAATGACTGTAATACCCCTGTAA
32945297 GGTAAAATGA
1 GGTAAAATGA
32945307 TTGTTTTGCC
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.37, C:0.16, G:0.20, T:0.26
Consensus pattern (27 bp):
GGTAAAATGACTGTAATACCCCTGTAA
Found at i:32947450 original size:24 final size:25
Alignment explanation
Indices: 32947423--32947476 Score: 58
Period size: 24 Copynumber: 2.2 Consensus size: 25
32947413 AGGGATTGTA
32947423 GGAGGGAGTT-GAGGAGAGA-TATAG
1 GGAGGGA-TTCGAGGAGAGAGTATAG
* * *
32947447 GGAGAGATTCTAGGAGAGAGTTTAG
1 GGAGGGATTCGAGGAGAGAGTATAG
32947472 GGAGG
1 GGAGG
32947477 TTTGAAGTGA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
23 2 0.08
24 14 0.58
25 8 0.33
ACGTcount: A:0.31, C:0.02, G:0.48, T:0.19
Consensus pattern (25 bp):
GGAGGGATTCGAGGAGAGAGTATAG
Found at i:32948758 original size:27 final size:27
Alignment explanation
Indices: 32948728--32948822 Score: 136
Period size: 27 Copynumber: 3.5 Consensus size: 27
32948718 AGGGTAAAAT
*
32948728 GGGTAAAATGACTGTAATACCCCAGTA
1 GGGTAAAATGACTGTAATACCCCTGTA
* * *
32948755 GGGTAAAATGACTATAATACCCTTGTG
1 GGGTAAAATGACTGTAATACCCCTGTA
*
32948782 GGGTAAAATTACTGTAATACCCCTGTA
1 GGGTAAAATGACTGTAATACCCCTGTA
*
32948809 AGGTAAAATGACTG
1 GGGTAAAATGACTG
32948823 ATTTGTCCTA
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (27 bp):
GGGTAAAATGACTGTAATACCCCTGTA
Found at i:32949006 original size:36 final size:36
Alignment explanation
Indices: 32948966--32949036 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 36
32948956 GTACAGATAT
* * *
32948966 GGTTGCATGGGTCGTCCAAGACGACTGTGGACCTAA
1 GGTTGCACGAGTCGCCCAAGACGACTGTGGACCTAA
32949002 GGTTGCACGAGTCGCCCAAGACGACTGTGGACCTA
1 GGTTGCACGAGTCGCCCAAGACGACTGTGGACCTA
32949037 CTGATGGATT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.23, C:0.25, G:0.32, T:0.20
Consensus pattern (36 bp):
GGTTGCACGAGTCGCCCAAGACGACTGTGGACCTAA
Found at i:32951441 original size:42 final size:42
Alignment explanation
Indices: 32951329--32951492 Score: 154
Period size: 43 Copynumber: 3.8 Consensus size: 42
32951319 AGAAAGCTTG
* * * * * *
32951329 TACAATGCTAACGTCCCAAACGTGGTCTTACATGTAATCAAA
1 TACAATGCCAACATCCTAGACGTGGTCTTACACGAAATCAAA
* *
32951371 TATCAATGCC-ACTATCCTAGATAG-GGTCTTACACGAAACCAAA
1 TA-CAATGCCAAC-ATCCTAGA-CGTGGTCTTACACGAAATCAAA
*
32951414 TACGATGCCAACATCCTAGACGTGGTCTTACACGTAAATCATAA
1 TACAATGCCAACATCCTAGACGTGGTCTTACACG-AAATCA-AA
* *
32951458 GT-CAATGCCAACATCCTAAATGTGGTCTTACACGA
1 -TACAATGCCAACATCCTAGACGTGGTCTTACACGA
32951493 TAACACATAT
Statistics
Matches: 100, Mismatches: 14, Indels: 15
0.78 0.11 0.12
Matches are distributed among these distances:
41 1 0.01
42 29 0.29
43 37 0.37
44 32 0.32
45 1 0.01
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (42 bp):
TACAATGCCAACATCCTAGACGTGGTCTTACACGAAATCAAA
Found at i:32951475 original size:44 final size:42
Alignment explanation
Indices: 32951348--32951491 Score: 143
Period size: 44 Copynumber: 3.4 Consensus size: 42
32951338 AACGTCCCAA
*
32951348 ACGTGGTCTTACATGT-AATCAAATATCAATGCC-ACTATCCTAG
1 ACGTGGTCTTACACGTAAATC-AA-ATCAATGCCAAC-ATCCTAG
* * *
32951391 ATAG-GGTCTTACACG-AAACCAAATACGATGCCAACATCCTAG
1 A-CGTGGTCTTACACGTAAATCAAAT-CAATGCCAACATCCTAG
*
32951433 ACGTGGTCTTACACGTAAATCATAAGTCAATGCCAACATCCTAA
1 ACGTGGTCTTACACGTAAATCA-AA-TCAATGCCAACATCCTAG
*
32951477 ATGTGGTCTTACACG
1 ACGTGGTCTTACACG
32951492 ATAACACATA
Statistics
Matches: 84, Mismatches: 9, Indels: 15
0.78 0.08 0.14
Matches are distributed among these distances:
41 3 0.04
42 27 0.32
43 21 0.25
44 32 0.38
45 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (42 bp):
ACGTGGTCTTACACGTAAATCAAATCAATGCCAACATCCTAG
Found at i:32952542 original size:37 final size:37
Alignment explanation
Indices: 32952489--32952591 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
32952479 CGAATAGTCC
*
32952489 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
32952526 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
32952563 CCACACGTAATCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
32952592 ATATATTTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:32952790 original size:48 final size:48
Alignment explanation
Indices: 32952732--32953062 Score: 581
Period size: 48 Copynumber: 6.9 Consensus size: 48
32952722 ATATACACAC
* *
32952732 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATACACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
32952780 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
32952828 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
32952876 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
32952924 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
32952972 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
32953020 ATCTCATATATATATTTCACATTAGCCTTTCGGCTTTACCACA
1 ATCTC--ATACATATTTCACACTAGCCATTCGGCTTTACCACA
32953063 CACATATATA
Statistics
Matches: 274, Mismatches: 7, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
48 240 0.88
50 34 0.12
ACGTcount: A:0.31, C:0.29, G:0.06, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:32961969 original size:27 final size:27
Alignment explanation
Indices: 32961934--32961988 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
32961924 TTTCTAAGGT
*
32961934 AAATGGTAGATAATATCTTAAAGACTA
1 AAATAGTAGATAATATCTTAAAGACTA
32961961 AAATAGTAGATAATATCTTAAAGACTA
1 AAATAGTAGATAATATCTTAAAGACTA
32961988 A
1 A
32961989 CCTAAATCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.51, C:0.07, G:0.13, T:0.29
Consensus pattern (27 bp):
AAATAGTAGATAATATCTTAAAGACTA
Found at i:32963569 original size:149 final size:147
Alignment explanation
Indices: 32962953--32963558 Score: 870
Period size: 147 Copynumber: 4.1 Consensus size: 147
32962943 CAAAGTTTTC
* * *
32962953 TTTAAAAATTAATCACTATTTTGCTTAAAAATCAAAACTTTATTTTGAAATAGTTGAAAAAGATC
1 TTTAAAAA-AAATCACTATTTTTCTTAAAAATCAAAACTTTATTTCGAAATAGTTGAAAAAGATC
* *
32963018 AAAACTTTATTTTAAAAATTTAAACTTTTCATTTAAAATGACTAAAAAACATATTTTTATTTTTA
65 AAAACTTTATTTTAAAAATTTAAACTTTTCCTTTAAAATGACT-AAAAACAAATTTTTATTTTTA
*
32963083 AAAATAAAAACTTTCTCTT
129 AAAATATAAACTTTCTCTT
* *
32963102 TTTAAAAAAAATCACTATTTTTCTTAAAAATCAAAATTTTATTTCGAAATAGTTGAAAAATATCA
1 TTTAAAAAAAATCACTATTTTTCTTAAAAATCAAAACTTTATTTCGAAATAGTTGAAAAAGATCA
* * * * * *
32963167 AAATTTTGTTTTAAAAAATTGAACTTTTCTTTTAAAATGACTAAAAACATATTTTTATTTTTAAA
66 AAACTTTATTTTAAAAATTTAAACTTTTCCTTTAAAATGACTAAAAACAAATTTTTATTTTTAAA
*
32963232 AATTTAAACTTTCTCTT
131 AATATAAACTTTCTCTT
*
32963249 TTTAAAAAAAATCACTATTTTTCTTAAAAATCAAAGCTTTATTTCGAAATAGTTGAAAAAGATCA
1 TTTAAAAAAAATCACTATTTTTCTTAAAAATCAAAACTTTATTTCGAAATAGTTGAAAAAGATCA
* * * * *
32963314 AAACTTTATGTTAAAATTTTAAACATTTCCTTTAAAATGATTAAAAACAAATTTTTATATTTAAA
66 AAACTTTATTTTAAAAATTTAAACTTTTCCTTTAAAATGACTAAAAACAAATTTTTATTTTTAAA
* *
32963379 AATATAAAATTTCACTTTT
131 AATATAAACTTT--CTCTT
* * *
32963398 TTTAAAAAAAGTCACTATTTTTCTTAAAAATCAAAACTTTATTTCGAAATAGTTGGAAAAGATGA
1 TTTAAAAAAAATCACTATTTTTCTTAAAAATCAAAACTTTATTTCGAAATAGTTGAAAAAGATCA
* * *
32963463 AAACTTTGTTTTAGAAATTTAATCTTTTCCTTTAAAATGACTAAAAACAAATTTTTATTTTTAAA
66 AAACTTTATTTTAAAAATTTAAACTTTTCCTTTAAAATGACTAAAAACAAATTTTTATTTTTAAA
* * *
32963528 AATCTAAAGTTTCTATTT
131 AATATAAACTTTCT-CTT
32963546 TTTGAAAAAAAAT
1 TTT-AAAAAAAAT
32963559 TAAAACTTTT
Statistics
Matches: 409, Mismatches: 44, Indels: 8
0.89 0.10 0.02
Matches are distributed among these distances:
147 166 0.41
148 95 0.23
149 148 0.36
ACGTcount: A:0.44, C:0.09, G:0.05, T:0.42
Consensus pattern (147 bp):
TTTAAAAAAAATCACTATTTTTCTTAAAAATCAAAACTTTATTTCGAAATAGTTGAAAAAGATCA
AAACTTTATTTTAAAAATTTAAACTTTTCCTTTAAAATGACTAAAAACAAATTTTTATTTTTAAA
AATATAAACTTTCTCTT
Found at i:32963976 original size:6 final size:6
Alignment explanation
Indices: 32963957--32963989 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
32963947 TAACAGACCC
*
32963957 AAAAAG AAAA-G AAAAGG AAAAGG AAAAGG AAAA
1 AAAAGG AAAAGG AAAAGG AAAAGG AAAAGG AAAA
32963990 AAGTCCTTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.19
6 21 0.81
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (6 bp):
AAAAGG
Found at i:32964438 original size:42 final size:42
Alignment explanation
Indices: 32964391--32964491 Score: 123
Period size: 42 Copynumber: 2.4 Consensus size: 42
32964381 CTTCATATAC
* * *
32964391 AATGCAATTAAAAGTAAATGGACCTCTACACCT-GGGCTTCTA
1 AATGCAATAAAAAGTAAATGGACCTCCACACCTAGGTC-TCTA
* * *
32964433 AATGCAATGAAAGGTAAATGGACCTCCACATCTAGGTCTCTA
1 AATGCAATAAAAAGTAAATGGACCTCCACACCTAGGTCTCTA
*
32964475 AATACAATAAAAAGTAA
1 AATGCAATAAAAAGTAA
32964492 GCAGACCTCC
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
42 47 0.94
43 3 0.06
ACGTcount: A:0.42, C:0.19, G:0.16, T:0.24
Consensus pattern (42 bp):
AATGCAATAAAAAGTAAATGGACCTCCACACCTAGGTCTCTA
Found at i:32964994 original size:21 final size:21
Alignment explanation
Indices: 32964953--32964995 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
32964943 CTCTTTTTGG
*
32964953 TTTCTTTTTCTTTGTTGTTTT
1 TTTCTTTTTCTTCGTTGTTTT
32964974 TTTCTTTTT-TTGCGTT-TTTT
1 TTTCTTTTTCTT-CGTTGTTTT
32964994 TT
1 TT
32964996 ATTTAGGTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.00, C:0.09, G:0.09, T:0.81
Consensus pattern (21 bp):
TTTCTTTTTCTTCGTTGTTTT
Found at i:32970647 original size:40 final size:39
Alignment explanation
Indices: 32970535--32970648 Score: 192
Period size: 39 Copynumber: 2.9 Consensus size: 39
32970525 ATTCGGATTG
32970535 ATAACCGGGCTAAGCCCGAAGGCATTCGTGCGAGTTACT
1 ATAACCGGGCTAAGCCCGAAGGCATTCGTGCGAGTTACT
32970574 ATAACCGGGCTAAGCCCGAAGGCATTCGTGCGAGTTACT
1 ATAACCGGGCTAAGCCCGAAGGCATTCGTGCGAGTTACT
* * *
32970613 ATAACCGGGCCAAGTCCCGAAGGCATTTGAGCGAGT
1 ATAACCGGGCTAAG-CCCGAAGGCATTCGTGCGAGT
32970649 AGGTATATCC
Statistics
Matches: 71, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 52 0.73
40 19 0.27
ACGTcount: A:0.26, C:0.25, G:0.29, T:0.19
Consensus pattern (39 bp):
ATAACCGGGCTAAGCCCGAAGGCATTCGTGCGAGTTACT
Found at i:32986399 original size:26 final size:26
Alignment explanation
Indices: 32986368--32986423 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
32986358 TGAAATGCCC
32986368 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
32986394 ATCATGGAACATTTATCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
32986420 ATCA
1 ATCA
32986424 ATTTGTACCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.38, C:0.23, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:33001616 original size:26 final size:26
Alignment explanation
Indices: 33001585--33001692 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
33001575 TGAAATGCCC
*
33001585 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
33001611 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
33001637 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
33001663 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
33001689 ATCA
1 ATCA
33001693 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:33004199 original size:26 final size:26
Alignment explanation
Indices: 33004159--33004208 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
33004149 ATAAGAATTC
33004159 CTTCTGAAATAAAATAGT-CACATATA
1 CTTCTGAAATAAAATA-TACACATATA
33004185 CTTCTGAGAAT-AAATATACACATA
1 CTTCTGA-AATAAAATATACACATA
33004209 GAACGCCCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 1 0.05
26 18 0.82
27 3 0.14
ACGTcount: A:0.46, C:0.16, G:0.08, T:0.30
Consensus pattern (26 bp):
CTTCTGAAATAAAATATACACATATA
Found at i:33005871 original size:31 final size:31
Alignment explanation
Indices: 33005824--33005902 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
33005814 TTTAACGATT
33005824 ACTAGGCCGAAGCCTTTTCATAAACCATGTC
1 ACTAGGCCGAAGCCTTTTCATAAACCATGTC
* * * *
33005855 ACTGGGCCAAAGCCTTTTCATAAATCATTTC
1 ACTAGGCCGAAGCCTTTTCATAAACCATGTC
33005886 ACTAGGCCGAAGCCTTT
1 ACTAGGCCGAAGCCTTT
33005903 ACTGTAAACG
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (31 bp):
ACTAGGCCGAAGCCTTTTCATAAACCATGTC
Found at i:33005973 original size:42 final size:42
Alignment explanation
Indices: 33005926--33006017 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
33005916 TGGCCCATAG
* ** *
33005926 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
33005968 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
33006010 GCCCATTT
1 GCCCATTT
33006018 AGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:33006207 original size:26 final size:26
Alignment explanation
Indices: 33006162--33006311 Score: 230
Period size: 26 Copynumber: 5.8 Consensus size: 26
33006152 CCTCTTTAAT
33006162 AACTGGGGCA-AAGCCCTTTTCAGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
33006187 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAGTA
* *
33006213 AACTAGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
33006239 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAGTA
**
33006265 AACTGGGGCATAAGCCCTTTTTGGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
33006291 AACTAGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
33006312 GCACTTCTTC
Statistics
Matches: 113, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
25 10 0.09
26 103 0.91
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAGTA
Found at i:33006240 original size:52 final size:52
Alignment explanation
Indices: 33006162--33006311 Score: 257
Period size: 52 Copynumber: 2.9 Consensus size: 52
33006152 CCTCTTTAAT
*
33006162 AACTGGGGCA-AAGCCCTTTTCAGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
*
33006213 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
* *
33006265 AACTGGGGCATAAGCCCTTTTTGGTAAACTAGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTT
33006312 GCACTTCTTC
Statistics
Matches: 93, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
51 9 0.10
52 84 0.90
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (52 bp):
AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
Found at i:33006267 original size:78 final size:77
Alignment explanation
Indices: 33006162--33006311 Score: 255
Period size: 78 Copynumber: 1.9 Consensus size: 77
33006152 CCTCTTTAAT
*
33006162 AACTGGGGCAAAGCCCTTTTCAGTAAACTGGGGCATAAGCCCTTTTCAATAAACTAGGGCATAAG
1 AACTGGGGCAAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCAATAAACTAGGGCATAAG
33006227 CCCTTTTCGGTA
66 CCCTTTTCGGTA
***
33006239 AACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTTGGTAAACTAGGGCATAA
1 AACTGGGGCA-AAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCAATAAACTAGGGCATAA
33006304 GCCCTTTT
65 GCCCTTTT
33006312 GCACTTCTTC
Statistics
Matches: 68, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
77 10 0.15
78 58 0.85
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (77 bp):
AACTGGGGCAAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCAATAAACTAGGGCATAAG
CCCTTTTCGGTA
Found at i:33007204 original size:27 final size:27
Alignment explanation
Indices: 33007114--33007196 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 27
33007104 GGGCATATTT
* *
33007114 GTCATTTTACCATACAA-GG-TATTACG
1 GTCACTTTACCCTACAAGGGCT-TTACG
33007140 GTCACTTTACCCTACAAGGGCTTTACG
1 GTCACTTTACCCTACAAGGGCTTTACG
33007167 GTCACTTTACCCTACAAGGGCTTTACG
1 GTCACTTTACCCTACAAGGGCTTTACG
33007194 GTC
1 GTC
33007197 TTTTTACCTA
Statistics
Matches: 53, Mismatches: 2, Indels: 3
0.91 0.03 0.05
Matches are distributed among these distances:
26 15 0.28
27 37 0.70
28 1 0.02
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCCTACAAGGGCTTTACG
Found at i:33007363 original size:56 final size:54
Alignment explanation
Indices: 33007255--33007391 Score: 143
Period size: 56 Copynumber: 2.5 Consensus size: 54
33007245 TTGGTAAATC
* *
33007255 TACAAACCAAGGGTATTT-TAGTAATTTTGTAAACTAATGGTATTTCTATAATTTT
1 TACAAATCAAGGGTATTTCT-GTAATTTTGTAAACTAAGGGTATTTCTATAA-TTT
* * * *
33007310 TAGAAAGTCAAGGGTATTTCTGTAATTTTGTAAATTAGGGGTATTT-TGGTAATTT
1 TACAAA-TCAAGGGTATTTCTGTAATTTTGTAAACTAAGGGTATTTCT-ATAATTT
** *
33007365 TACAAATTGAGGGTATTTCAGTAATTT
1 TACAAATCAAGGGTATTTCTGTAATTT
33007392 CACAAACCGA
Statistics
Matches: 69, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
54 18 0.26
55 14 0.20
56 36 0.52
57 1 0.01
ACGTcount: A:0.32, C:0.07, G:0.18, T:0.43
Consensus pattern (54 bp):
TACAAATCAAGGGTATTTCTGTAATTTTGTAAACTAAGGGTATTTCTATAATTT
Found at i:33007487 original size:27 final size:27
Alignment explanation
Indices: 33007236--33007473 Score: 183
Period size: 27 Copynumber: 8.7 Consensus size: 27
33007226 TTCATCCTAC
* * * * *
33007236 AAGGGTGTTTTGGTAAATCTACAAACC
1 AAGGGTATTTTAGTAATTTTACAAACT
**
33007263 AAGGGTATTTTAGTAATTTTGTAAACT
1 AAGGGTATTTTAGTAATTTTACAAACT
* * *
33007290 AATGGTATTTCTA-TAATTTTTAGAAAGT
1 AAGGGTATTT-TAGTAA-TTTTACAAACT
** *
33007318 CAAGGGTATTTCT-GTAATTTTGTAAATT
1 -AAGGGTATTT-TAGTAATTTTACAAACT
* * *
33007346 AGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTTAGTAATTTTACAAACT
* * * *
33007373 GAGGGTATTTCAGTAATTTCACAAACC
1 AAGGGTATTTTAGTAATTTTACAAACT
* * * *
33007400 GATGGTATTTTGGTAGTTTTACAAACT
1 AAGGGTATTTTAGTAATTTTACAAACT
* * *
33007427 AGGGGTATTTTGGTAATTTTACAAACC
1 AAGGGTATTTTAGTAATTTTACAAACT
33007454 AAGGGTATTTTAGTAATTTT
1 AAGGGTATTTTAGTAATTTT
33007474 GTAAATTGAG
Statistics
Matches: 168, Mismatches: 38, Indels: 10
0.78 0.18 0.05
Matches are distributed among these distances:
26 1 0.01
27 135 0.80
28 18 0.11
29 14 0.08
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
AAGGGTATTTTAGTAATTTTACAAACT
Found at i:33007494 original size:27 final size:27
Alignment explanation
Indices: 33007466--33007649 Score: 233
Period size: 27 Copynumber: 6.8 Consensus size: 27
33007456 GGGTATTTTA
* * **
33007466 GTAATTTTGTAAATTGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
33007493 GTAATTCTATAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
33007520 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
33007547 GTAATTCTATAAATTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
33007574 GTAATTATGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
33007601 GTAATTATGTAAATTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
33007628 GTAATTCTGTAAATCGGGGGTA
1 GTAATTCTGTAAATCGAGGGTA
33007650 CTTTGATAAT
Statistics
Matches: 140, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 140 1.00
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:33007524 original size:81 final size:81
Alignment explanation
Indices: 33007439--33007598 Score: 176
Period size: 81 Copynumber: 2.0 Consensus size: 81
33007429 GGGTATTTTG
* **** * * * *
33007439 GTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAATTGAGGGTAAAATAGTAATTCTATA
1 GTAATTCTACAAACCAAGGGTAAAACAGTAATTCTATAAATTGAGGGTAAAACAGTAATTATATA
33007504 AATCAAGGGTAAAACA
66 AATCAAGGGTAAAACA
* * * * * *
33007520 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAACGGTAATTATGTA
1 GTAATTCTACAAACCAAGGGTAAAACAGTAATTCTATAAATTGAGGGTAAAACAGTAATTATATA
*
33007585 AATCGAGGGTAAAA
66 AATCAAGGGTAAAA
33007599 TGGTAATTAT
Statistics
Matches: 63, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
81 63 1.00
ACGTcount: A:0.42, C:0.07, G:0.20, T:0.31
Consensus pattern (81 bp):
GTAATTCTACAAACCAAGGGTAAAACAGTAATTCTATAAATTGAGGGTAAAACAGTAATTATATA
AATCAAGGGTAAAACA
Found at i:33007727 original size:26 final size:27
Alignment explanation
Indices: 33007656--33007744 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 27
33007646 GGTACTTTGA
*
33007656 TAATTTTACAAGTCGAAGGTATTTCAG
1 TAATTTTACAAATCGAAGGTATTTCAG
*
33007683 TAATTTTACAAATCGAAGGTATTTTAG
1 TAATTTTACAAATCGAAGGTATTTCAG
* * * *
33007710 TATTTTTACAAA-CTAAGGGCATTTCGG
1 TAATTTTACAAATCGAA-GGTATTTCAG
33007737 TAATTTTA
1 TAATTTTA
33007745 GTAAACTAAA
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
26 3 0.06
27 50 0.94
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.40
Consensus pattern (27 bp):
TAATTTTACAAATCGAAGGTATTTCAG
Found at i:33009999 original size:31 final size:31
Alignment explanation
Indices: 33009952--33010030 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
33009942 TTTAACGATT
*
33009952 ACTGGGCCGAAGCCTTTTCATAAACCATATC
1 ACTGGGCCAAAGCCTTTTCATAAACCATATC
* * *
33009983 ACTGTGCCAAAGCCTTTTCATAAATCATTTC
1 ACTGGGCCAAAGCCTTTTCATAAACCATATC
33010014 ACTGGGCCAAAGCCTTT
1 ACTGGGCCAAAGCCTTT
33010031 ACTGTAAACG
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29
Consensus pattern (31 bp):
ACTGGGCCAAAGCCTTTTCATAAACCATATC
Found at i:33010101 original size:42 final size:42
Alignment explanation
Indices: 33010054--33010145 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
33010044 TGGCCCATAG
* ** *
33010054 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
33010096 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
33010138 GCCCATTT
1 GCCCATTT
33010146 AGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:33010334 original size:26 final size:26
Alignment explanation
Indices: 33010289--33010441 Score: 200
Period size: 26 Copynumber: 5.8 Consensus size: 26
33010279 GCCTCTTAAT
*
33010289 AACTAGGGCA-AAGCCCTTTTCAGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
* *
33010314 AACTAGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
33010340 AACTGGGGCATATTATGCCCTTTTCGGTA
1 AACTGGGGCATA--A-GCCCTTTTCAGTA
*
33010369 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
33010395 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
* *
33010421 AACTGAGGAATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
33010442 TCACTTCTTC
Statistics
Matches: 114, Mismatches: 10, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
25 10 0.09
26 79 0.69
27 1 0.01
28 1 0.01
29 23 0.20
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAGTA
Found at i:33010370 original size:55 final size:51
Alignment explanation
Indices: 33010289--33010441 Score: 218
Period size: 55 Copynumber: 2.9 Consensus size: 51
33010279 GCCTCTTAAT
* *
33010289 AACTAGGGCA-AAGCCCTTTTCAGTAAACTAGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACT-GGGCATAAGCCCTTTTCAATA
33010340 AACTGGGGCATATTATGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATA--A-GCCCTTTTCGGTAAACT-GGGCATAAGCCCTTTTCAATA
*
33010395 AACTGGGGCATAAGCCCTTTTCGGTAAACTGAGGAATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTG-GGCATAAGCCCTTTT
33010442 TCACTTCTTC
Statistics
Matches: 93, Mismatches: 4, Indels: 9
0.88 0.04 0.08
Matches are distributed among these distances:
51 10 0.11
52 32 0.34
53 1 0.01
54 1 0.01
55 49 0.53
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (51 bp):
AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGCATAAGCCCTTTTCAATA
Found at i:33011279 original size:27 final size:26
Alignment explanation
Indices: 33011244--33011324 Score: 108
Period size: 27 Copynumber: 3.0 Consensus size: 26
33011234 GGGCATATTC
* * *
33011244 GTCATTTTACCATACAGGGGTATTACG
1 GTCACTTTACCCTACAGGGCT-TTACG
33011271 GTCACTTTACCCTACAAGGGCTTTACG
1 GTCACTTTACCCTAC-AGGGCTTTACG
33011298 GTCACTTTACCCTACAAGGGCTTTACG
1 GTCACTTTACCCTAC-AGGGCTTTACG
33011325 ATTTTTTTAC
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
27 45 0.90
28 5 0.10
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (26 bp):
GTCACTTTACCCTACAGGGCTTTACG
Found at i:33011419 original size:27 final size:27
Alignment explanation
Indices: 33011367--33011604 Score: 172
Period size: 27 Copynumber: 8.7 Consensus size: 27
33011357 TTCATCCTAC
* * * *
33011367 AAGGGTGTTTTGGTAAATATACAAACT
1 AAGGGTATTTCGGTAATTTTACAAACT
* **
33011394 AAGGGTATTTCAGTAATTTTGTAAACT
1 AAGGGTATTTCGGTAATTTTACAAACT
* ** * *
33011421 AATGGTATTTCTATAATTTTTAGAAAGT
1 AAGGGTATTTCGGTAA-TTTTACAAACT
* ** *
33011449 CAAGGGTATTTCTGG-AACTTTGTAAATT
1 -AAGGGTATTTC-GGTAATTTTACAAACT
* * *
33011477 AGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTCGGTAATTTTACAAACT
* * * *
33011504 GAGGGTATTTCGGCAATTTCACAAACC
1 AAGGGTATTTCGGTAATTTTACAAACT
* *
33011531 AATGGTATTTTGGTAATTTTACAAACT
1 AAGGGTATTTCGGTAATTTTACAAACT
* * *
33011558 AAGGGTATTTTGGTAACTTTACAAACC
1 AAGGGTATTTCGGTAATTTTACAAACT
**
33011585 AAGGGTATTTTAGTAATTTT
1 AAGGGTATTTCGGTAATTTT
33011605 GTAAATCGAG
Statistics
Matches: 164, Mismatches: 43, Indels: 8
0.76 0.20 0.04
Matches are distributed among these distances:
26 2 0.01
27 135 0.82
28 15 0.09
29 12 0.07
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.39
Consensus pattern (27 bp):
AAGGGTATTTCGGTAATTTTACAAACT
Found at i:33011803 original size:27 final size:27
Alignment explanation
Indices: 33011596--33011801 Score: 250
Period size: 27 Copynumber: 7.6 Consensus size: 27
33011586 AGGGTATTTT
* **
33011596 AGTAATTTTGTAAATCGAGGGTAAAGT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
33011623 AGTAATTCTATAAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
33011650 AATAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
33011677 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
33011704 AGCAATTCTGTAAGTCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
33011731 AGTAATTATGTAAATCGGGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
33011758 GGTAATTATGTAAATCGGGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
33011785 GGTAATTCTGTAAATCG
1 AGTAATTCTGTAAATCG
33011802 GGCTCACCTA
Statistics
Matches: 158, Mismatches: 21, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 158 1.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:33017704 original size:2 final size:2
Alignment explanation
Indices: 33017697--33017727 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
33017687 CATATTCGGC
*
33017697 TA TA TA TA TA TA TA TA TA TA TA CA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
33017728 GTAAGCCCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:33018516 original size:27 final size:27
Alignment explanation
Indices: 33018485--33018662 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
33018475 TAAATTGTAC
33018485 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
33018512 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
33018538 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
33018566 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
33018594 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
33018621 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
33018648 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
33018663 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:33018599 original size:82 final size:81
Alignment explanation
Indices: 33018486--33018641 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
33018476 AAATTGTACA
* *
33018486 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
33018550 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
33018567 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
33018632 TGCGAGTTGA
65 TGCGAATTGA
33018642 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:33018653 original size:82 final size:81
Alignment explanation
Indices: 33018482--33018662 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
33018472 GATTAAATTG
* *
33018482 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
33018547 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
33018563 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
33018627 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
33018645 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
33018663 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:33026527 original size:27 final size:27
Alignment explanation
Indices: 33026496--33026673 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
33026486 TAAATTGTAC
33026496 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
33026523 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
33026549 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* *
33026577 GGCACTAAATGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
33026605 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
33026632 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
33026659 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
33026674 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 105 0.83
28 22 0.17
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:33026610 original size:82 final size:81
Alignment explanation
Indices: 33026497--33026652 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
33026487 AAATTGTACA
* * *
33026497 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAATGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
33026561 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
33026578 GCACTAAATGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAATGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
33026643 TGCGAGTTGA
65 TGCGAATTGA
33026653 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 14 0.21
82 51 0.77
83 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAATGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Done.