Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 105 of 356
Found at i:33026664 original size:82 final size:81
Alignment explanation
Indices: 33026493--33026673 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
33026483 GATTAAATTG
* *
33026493 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
33026558 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
33026574 TGCGGCACTAAATGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
33026638 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
33026656 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
33026674 GACTCAATAT
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 17 0.21
82 65 0.79
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:33036992 original size:44 final size:42
Alignment explanation
Indices: 33036929--33037086 Score: 138
Period size: 43 Copynumber: 3.7 Consensus size: 42
33036919 ATGTGTTTTG
* *
33036929 GTGTAAGACCACGTCTGGGATATTGGCATCA-ATTTACGATTTAC
1 GTGTAAGACCATGTCTGGGACATTGGCATCATATTTA--ATTT-C
* *
33036973 GTGTAAGACCATGTCTGGGACATCGACATCATATTTAATTTC
1 GTGTAAGACCATGTCTGGGACATTGGCATCATATTTAATTTC
* * * * * *
33037015 ATGTAAGACCCTATCTGGGACAGTGGCATCGATATTTGATTAC
1 GTGTAAGACCATGTCTGGGACATTGGCATC-ATATTTAATTTC
* * * * *
33037058 ATGTAAGTCCACGTCTAGGACGTTGGCAT
1 GTGTAAGACCATGTCTGGGACATTGGCAT
33037087 TGTACGAGAT
Statistics
Matches: 93, Mismatches: 19, Indels: 5
0.79 0.16 0.04
Matches are distributed among these distances:
42 25 0.27
43 36 0.39
44 27 0.29
45 5 0.05
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (42 bp):
GTGTAAGACCATGTCTGGGACATTGGCATCATATTTAATTTC
Found at i:33037032 original size:42 final size:43
Alignment explanation
Indices: 33036969--33037064 Score: 115
Period size: 42 Copynumber: 2.3 Consensus size: 43
33036959 AATTTACGAT
* *
33036969 TTACGTGTAAGACCATGTCTGGGACA-TCGACATC-ATATTTAA
1 TTACATGTAAGACCATATCTGGGACAGT-GACATCGATATTTAA
* * * *
33037011 TTTCATGTAAGACCCTATCTGGGACAGTGGCATCGATATTTGA
1 TTACATGTAAGACCATATCTGGGACAGTGACATCGATATTTAA
33037054 TTACATGTAAG
1 TTACATGTAAG
33037065 TCCACGTCTA
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
42 27 0.60
43 18 0.40
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (43 bp):
TTACATGTAAGACCATATCTGGGACAGTGACATCGATATTTAA
Found at i:33040184 original size:28 final size:30
Alignment explanation
Indices: 33040135--33040242 Score: 102
Period size: 29 Copynumber: 3.8 Consensus size: 30
33040125 TTCACATACC
* *
33040135 TGTATCTGGCCCATTA-AGCCC-AATCATA
1 TGTATATGGCCCATTAGAGCCCAAATCACA
*
33040163 T-TCATATGGCCCATTAGA-CCCAAATCACC
1 TGT-ATATGGCCCATTAGAGCCCAAATCACA
*
33040192 TGTATATGGCCCATTAG-GCCTAAATCACA
1 TGTATATGGCCCATTAGAGCCCAAATCACA
* **
33040221 TTTATATATCCCATTAG-GCCCA
1 TGTATATGGCCCATTAGAGCCCA
33040243 GCCACATTCA
Statistics
Matches: 66, Mismatches: 9, Indels: 9
0.79 0.11 0.11
Matches are distributed among these distances:
27 1 0.02
28 16 0.24
29 48 0.73
30 1 0.02
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.29
Consensus pattern (30 bp):
TGTATATGGCCCATTAGAGCCCAAATCACA
Found at i:33040345 original size:18 final size:19
Alignment explanation
Indices: 33040322--33040357 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
33040312 CTGGGCCTAA
33040322 TAGCCCA-TCGGGCCCATT
1 TAGCCCATTCGGGCCCATT
*
33040340 TAGCCCATTCTGGCCCAT
1 TAGCCCATTCGGGCCCAT
33040358 ATGGACAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.17, C:0.39, G:0.19, T:0.25
Consensus pattern (19 bp):
TAGCCCATTCGGGCCCATT
Found at i:33044708 original size:28 final size:28
Alignment explanation
Indices: 33044676--33044790 Score: 133
Period size: 29 Copynumber: 4.0 Consensus size: 28
33044666 TACATGTATC
* *
33044676 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
*
33044704 TGGCCCATTAGGCCCAAATCACCTGT-ATA
1 TGGCCCATTAGGCCC-AATCACAT-TCATA
* *
33044733 TGGCCCATTAGGCTCAAATCACATTTATA
1 TGGCCCATTAGGC-CCAATCACATTCATA
* *
33044762 TGTCCCATTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
33044790 T
1 T
33044791 TCATGCTCAC
Statistics
Matches: 74, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
28 28 0.38
29 44 0.59
30 2 0.03
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.29
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:33044733 original size:29 final size:29
Alignment explanation
Indices: 33044667--33044777 Score: 136
Period size: 29 Copynumber: 3.9 Consensus size: 29
33044657 AATTTCACAT
* *
33044667 ACATGTATCTGGCCCATTAAGCCC-AATC
1 ACATGTATATGGCCCATTAGGCCCAAATC
*
33044695 ATAT-TCATATGGCCCATTAGGCCCAAATC
1 ACATGT-ATATGGCCCATTAGGCCCAAATC
* *
33044724 ACCTGTATATGGCCCATTAGGCTCAAATC
1 ACATGTATATGGCCCATTAGGCCCAAATC
* *
33044753 ACATTTATATGTCCCATTAGGCCCA
1 ACATGTATATGGCCCATTAGGCCCA
33044778 GTCACATTCA
Statistics
Matches: 70, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
27 1 0.01
28 19 0.27
29 49 0.70
30 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (29 bp):
ACATGTATATGGCCCATTAGGCCCAAATC
Found at i:33051535 original size:44 final size:43
Alignment explanation
Indices: 33051456--33051618 Score: 195
Period size: 43 Copynumber: 3.8 Consensus size: 43
33051446 TTACAGGATC
* * *
33051456 CGATATGTGTTTTCGTGTAAGACCATGTCTAGGACATTGGCAT
1 CGATATTTGATTTCGTGTAAGACCATGTCTGGGACATTGGCAT
*
33051499 CGAT-TTATGATTTATGTGTAAGACCATGTCTGGGACATTGGCAT
1 CGATATT-TGATTT-CGTGTAAGACCATGTCTGGGACATTGGCAT
* *
33051543 CG-TATTTGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCAT
1 CGATATTTGATTTCGTGTAAGACCATGTCTGGGACATTGGCAT
* * * * *
33051585 CGACATTTGATTACATGTAAAACCACGTCTGGGA
1 CGATATTTGATTTCGTGTAAGACCATGTCTGGGA
33051619 TGTTGTCATT
Statistics
Matches: 103, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
42 30 0.29
43 41 0.40
44 32 0.31
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (43 bp):
CGATATTTGATTTCGTGTAAGACCATGTCTGGGACATTGGCAT
Found at i:33052863 original size:13 final size:13
Alignment explanation
Indices: 33052845--33052872 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
33052835 ATTCTTTCTC
33052845 TATTTATGAAGTT
1 TATTTATGAAGTT
33052858 TATTTATGAAGTT
1 TATTTATGAAGTT
33052871 TA
1 TA
33052873 CTTGTACAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.14, T:0.54
Consensus pattern (13 bp):
TATTTATGAAGTT
Found at i:33054269 original size:12 final size:12
Alignment explanation
Indices: 33054252--33054277 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
33054242 TTTTCTAGAA
33054252 AACATTATATCG
1 AACATTATATCG
33054264 AACATTATATCG
1 AACATTATATCG
33054276 AA
1 AA
33054278 TACACAAACG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.31
Consensus pattern (12 bp):
AACATTATATCG
Found at i:33055006 original size:18 final size:18
Alignment explanation
Indices: 33054983--33055040 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 18
33054973 ATTTGAAGGA
33054983 ATGAAGGGAGAAGAATGG
1 ATGAAGGGAGAAGAATGG
* *** *
33055001 ATGAAGGAAGCTTACTGG
1 ATGAAGGGAGAAGAATGG
*
33055019 ATGAAGGGAGAAGAATGC
1 ATGAAGGGAGAAGAATGG
33055037 ATGA
1 ATGA
33055041 GAGCTTTAGG
Statistics
Matches: 29, Mismatches: 11, Indels: 0
0.73 0.28 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.41, C:0.05, G:0.38, T:0.16
Consensus pattern (18 bp):
ATGAAGGGAGAAGAATGG
Found at i:33061224 original size:13 final size:13
Alignment explanation
Indices: 33061206--33061231 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
33061196 ACACTATCTC
33061206 ACAAAAATTAGAA
1 ACAAAAATTAGAA
33061219 ACAAAAATTAGAA
1 ACAAAAATTAGAA
33061232 TATCACATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.08, G:0.08, T:0.15
Consensus pattern (13 bp):
ACAAAAATTAGAA
Found at i:33061739 original size:50 final size:50
Alignment explanation
Indices: 33061621--33061866 Score: 253
Period size: 49 Copynumber: 4.9 Consensus size: 50
33061611 TAGCCAAAGC
* * * ** * * * *
33061621 TATCCGGTACGCATAGTAGCTTTTACTTAGAACTATACATGCGACC-AAT
1 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAT
* * *
33061670 TATCCGGTACATGTAGTAGCCTGTACTTAGTACTACACACGTGACCTAAC
1 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAT
* * * * *
33061720 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-T
* ** * * * *
33061771 TATCGGGTATGCATAGTAGCTTGCACTTAGTACTACACATGCGACC-AAT
1 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAT
33061820 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCT
1 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCT
33061867 CACAATAGAT
Statistics
Matches: 159, Mismatches: 35, Indels: 5
0.80 0.18 0.03
Matches are distributed among these distances:
49 77 0.48
50 46 0.29
51 36 0.23
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (50 bp):
TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAT
Found at i:33061853 original size:100 final size:101
Alignment explanation
Indices: 33061683--33061863 Score: 283
Period size: 100 Copynumber: 1.8 Consensus size: 101
33061673 CCGGTACATG
* * *
33061683 TAGTAGCCTGTACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCCGATACACGTAGTAGCCTGCACTT
33061748 AGTACTACACACGTGATCGAAGTTATCGGGTATGCA
66 AGTACTACACACGTGATCGAAGTTATCGGGTATGCA
* * ** *
33061784 TAGTAGCTTGCACTTAGTACTACACATGCGACC-AATTATCCGGTACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCCGATACACGTAGTAGCCTGCACTT
33061848 AGTACTACACACGTGA
66 AGTACTACACACGTGA
33061864 CCTCACAATA
Statistics
Matches: 72, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
100 43 0.60
101 29 0.40
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCCGATACACGTAGTAGCCTGCACTT
AGTACTACACACGTGATCGAAGTTATCGGGTATGCA
Found at i:33062980 original size:13 final size:13
Alignment explanation
Indices: 33062964--33062989 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
33062954 CGAACGAAAC
33062964 TTTCACGAAATCT
1 TTTCACGAAATCT
33062977 TTTCACGAAATCT
1 TTTCACGAAATCT
33062990 AGACCATAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (13 bp):
TTTCACGAAATCT
Found at i:33067029 original size:51 final size:49
Alignment explanation
Indices: 33066892--33067089 Score: 234
Period size: 50 Copynumber: 4.0 Consensus size: 49
33066882 ACATGCGGCC
* * * *
33066892 AATTATTCGGTACATGTAGTAGCCTGTACTTAGTACTACACACGTGACCT
1 AATTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CA
** * *
33066942 AACCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCA
1 AATTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CA
* * * * * * *
33066992 AAGTTATCGGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACC
1 AA-TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACA
33067042 AATTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGAC
1 AATTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGAC
33067090 CTCACAATAG
Statistics
Matches: 122, Mismatches: 25, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
49 40 0.33
50 46 0.38
51 36 0.30
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (49 bp):
AATTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACA
Found at i:33067070 original size:49 final size:49
Alignment explanation
Indices: 33066859--33067090 Score: 239
Period size: 49 Copynumber: 4.7 Consensus size: 49
33066849 CTGGTACGCA
* * * * * * * *
33066859 TAGTAGCTTGTACTTAGAACTATACATGCGGCCAATTATTCGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
* * ** * *
33066908 TAGTAGCCTGTACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCCGGTACACG
* * * * *
33066958 TAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCGGTACACG
* *
33067009 TAGTAGCTTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
*
33067058 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC
33067091 TCACAATAGA
Statistics
Matches: 150, Mismatches: 30, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
49 68 0.45
50 45 0.30
51 37 0.25
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
Found at i:33067078 original size:100 final size:101
Alignment explanation
Indices: 33066908--33067088 Score: 283
Period size: 100 Copynumber: 1.8 Consensus size: 101
33066898 TCGGTACATG
* * *
33066908 TAGTAGCCTGTACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCCGATACACGTAGTAGCCTGCACTT
33066973 AGTACTACACACGTGATCAAAGTTATCGGGTACGCA
66 AGTACTACACACGTGATCAAAGTTATCGGGTACGCA
* * ** *
33067009 TAGTAGCTTGCACTTAGTACTACACATGCGACC-AATTATCCGGTACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCCGATACACGTAGTAGCCTGCACTT
33067073 AGTACTACACACGTGA
66 AGTACTACACACGTGA
33067089 CCTCACAATA
Statistics
Matches: 72, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
100 43 0.60
101 29 0.40
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCCGATACACGTAGTAGCCTGCACTT
AGTACTACACACGTGATCAAAGTTATCGGGTACGCA
Found at i:33070893 original size:38 final size:38
Alignment explanation
Indices: 33070842--33070943 Score: 186
Period size: 38 Copynumber: 2.7 Consensus size: 38
33070832 TTAAGCTCGA
*
33070842 ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCAG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAG
33070880 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAG
*
33070918 ATGTAATACCAGCACGAAGCCTGCGG
1 ATATAATACCAGCACGAAGCCTGCGG
33070944 ACCTTTAAGC
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 62 1.00
ACGTcount: A:0.33, C:0.26, G:0.22, T:0.19
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAG
Found at i:33074436 original size:3 final size:3
Alignment explanation
Indices: 33074428--33074480 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
33074418 ATTTGATCTT
33074428 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
33074476 TTA TT
1 TTA TT
33074481 TAAATGATTT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:33086166 original size:16 final size:16
Alignment explanation
Indices: 33086145--33086180 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
33086135 GACAAATCCC
33086145 GAAATGCCGAAAAGCT
1 GAAATGCCGAAAAGCT
**
33086161 GAAATGTTGAAAAGCT
1 GAAATGCCGAAAAGCT
33086177 GAAA
1 GAAA
33086181 AGTCTGGCTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.47, C:0.11, G:0.25, T:0.17
Consensus pattern (16 bp):
GAAATGCCGAAAAGCT
Found at i:33086448 original size:28 final size:29
Alignment explanation
Indices: 33086381--33086449 Score: 86
Period size: 28 Copynumber: 2.4 Consensus size: 29
33086371 TTCGGGTCAG
* *
33086381 ATGGGCCATATAAATGTGATTTGGGCCTA
1 ATGGGCCATATGAATGAGATTTGGGCCTA
*
33086410 ATAGGCCATATGAATGAGA-TTGGGCCTA
1 ATGGGCCATATGAATGAGATTTGGGCCTA
* *
33086438 GTGGGCAATATG
1 ATGGGCCATATG
33086450 CATGTACGTA
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
28 18 0.53
29 16 0.47
ACGTcount: A:0.29, C:0.13, G:0.30, T:0.28
Consensus pattern (29 bp):
ATGGGCCATATGAATGAGATTTGGGCCTA
Found at i:33086843 original size:27 final size:27
Alignment explanation
Indices: 33086777--33086836 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
33086767 CTAATTTGTG
*
33086777 AAATTACTAAAATACCCTCGACCTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
* *
33086804 CAATTACTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
33086831 AAATTA
1 AAATTA
33086837 TCGAAATGCC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.40, C:0.23, G:0.08, T:0.28
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGACCTGTA
Found at i:33093605 original size:20 final size:19
Alignment explanation
Indices: 33093582--33093640 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 19
33093572 TAAATTCTAC
33093582 AAGATAAATACAAATAAATA
1 AAGATAAATA-AAATAAATA
* * *
33093602 AAGATAATTAAAGATGATTA
1 AAGATAAATAAA-ATAAATA
33093622 AAGATAAATGAAAATAAAT
1 AAGATAAAT-AAAATAAAT
33093641 CTTAAAATTA
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
19 2 0.06
20 26 0.84
21 3 0.10
ACGTcount: A:0.64, C:0.02, G:0.10, T:0.24
Consensus pattern (19 bp):
AAGATAAATAAAATAAATA
Found at i:33096020 original size:40 final size:40
Alignment explanation
Indices: 33095972--33096238 Score: 471
Period size: 40 Copynumber: 6.7 Consensus size: 40
33095962 GCAAACACAT
* *
33095972 TTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
33096012 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
** *
33096052 TTGCCTTCGGGTCACAGCCCGGATATATCAACTCGCATAG
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
33096092 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
33096132 TTGCCTTCGGGTTTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
33096172 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
33096212 TTGCCTTCGGGTCTTAGCCCGGATATA
1 TTGCCTTCGGGTCTTAGCCCGGATATA
33096239 ATCCAATGCT
Statistics
Matches: 215, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 215 1.00
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:33106712 original size:41 final size:41
Alignment explanation
Indices: 33106687--33106947 Score: 416
Period size: 41 Copynumber: 6.4 Consensus size: 41
33106677 CGTTTTACCA
* *
33106687 AAAACGCCGCTAAAAGATAGAGCTTTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAGACAGAGCATTAGCGGCGCTTTTGGT
*
33106728 AAAACGCCGCTAAAAGACAGAGCATTAGCGGTGC-TTTGGT
1 AAAACGCCGCTAAAAGACAGAGCATTAGCGGCGCTTTTGGT
* * * *
33106768 AAAACGCCGCTAAGAGACAGAGTAGTAGCGGCACTTTTGGT
1 AAAACGCCGCTAAAAGACAGAGCATTAGCGGCGCTTTTGGT
* *
33106809 AAAACGCCGCTAAAAGACAGAGCAGTAGCGACGCTTTTGGT
1 AAAACGCCGCTAAAAGACAGAGCATTAGCGGCGCTTTTGGT
*
33106850 AAAATGCCGCTAAAAGACAGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAGACAGAGCATTAGCGGCGCTTTTGGT
*
33106891 AAAACGCCGCTAAAATACAGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAGACAGAGCATTAGCGGCGCTTTTGGT
33106932 AAAACGCCGCTAAAAG
1 AAAACGCCGCTAAAAG
33106948 TCATATAACT
Statistics
Matches: 201, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
40 35 0.17
41 166 0.83
ACGTcount: A:0.33, C:0.21, G:0.26, T:0.20
Consensus pattern (41 bp):
AAAACGCCGCTAAAAGACAGAGCATTAGCGGCGCTTTTGGT
Found at i:33107909 original size:14 final size:14
Alignment explanation
Indices: 33107875--33107923 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
33107865 ACTATTTTAA
33107875 GGTTTATGGATTAT
1 GGTTTATGGATTAT
33107889 GGGTTTATGGATTAT
1 -GGTTTATGGATTAT
** *
33107904 GGTTTACAGTTTAT
1 GGTTTATGGATTAT
33107918 GGTTTA
1 GGTTTA
33107924 AAGGTTGGGG
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
14 17 0.55
15 14 0.45
ACGTcount: A:0.20, C:0.02, G:0.29, T:0.49
Consensus pattern (14 bp):
GGTTTATGGATTAT
Found at i:33107922 original size:7 final size:7
Alignment explanation
Indices: 33107870--33107923 Score: 54
Period size: 7 Copynumber: 7.6 Consensus size: 7
33107860 GAGTTACTAT
*
33107870 TTTAAGG
1 TTTATGG
33107877 TTTATGG
1 TTTATGG
*
33107884 ATTATGGG
1 TTTAT-GG
33107892 TTTATGG
1 TTTATGG
*
33107899 ATTATGG
1 TTTATGG
**
33107906 TTTACAG
1 TTTATGG
33107913 TTTATGG
1 TTTATGG
33107920 TTTA
1 TTTA
33107924 AAGGTTGGGG
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
7 31 0.84
8 6 0.16
ACGTcount: A:0.22, C:0.02, G:0.26, T:0.50
Consensus pattern (7 bp):
TTTATGG
Found at i:33107959 original size:21 final size:21
Alignment explanation
Indices: 33107926--33107989 Score: 78
Period size: 21 Copynumber: 3.0 Consensus size: 21
33107916 ATGGTTTAAA
*
33107926 GGTT-GGGGTTTAAGGTTTA-G
1 GGTTAGGGG-TTAAGGGTTATG
33107946 GTGTTAGGGGTTAAGGGTTATG
1 G-GTTAGGGGTTAAGGGTTATG
*
33107968 GGTTAGGGGTTATGGGTTATG
1 GGTTAGGGGTTAAGGGTTATG
33107989 G
1 G
33107990 ATTTAAGGGT
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
20 1 0.03
21 32 0.82
22 6 0.15
ACGTcount: A:0.16, C:0.00, G:0.47, T:0.38
Consensus pattern (21 bp):
GGTTAGGGGTTAAGGGTTATG
Found at i:33107987 original size:7 final size:7
Alignment explanation
Indices: 33107948--33108003 Score: 58
Period size: 7 Copynumber: 7.9 Consensus size: 7
33107938 AGGTTTAGGT
*
33107948 GTTAGGG
1 GTTATGG
*
33107955 GTTAAGG
1 GTTATGG
33107962 GTTATGG
1 GTTATGG
*
33107969 GTTAGGG
1 GTTATGG
33107976 GTTATGG
1 GTTATGG
33107983 GTTATGG
1 GTTATGG
* *
33107990 ATTTAAGG
1 -GTTATGG
33107998 GTTATG
1 GTTATG
33108004 TTGTATGATT
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
7 35 0.88
8 5 0.12
ACGTcount: A:0.20, C:0.00, G:0.43, T:0.38
Consensus pattern (7 bp):
GTTATGG
Found at i:33108163 original size:14 final size:14
Alignment explanation
Indices: 33108144--33108210 Score: 73
Period size: 14 Copynumber: 4.7 Consensus size: 14
33108134 GTTTGCAGGT
*
33108144 AAAATGTTTTCTTG
1 AAAATGATTTCTTG
* *
33108158 AAAATGATTTATGG
1 AAAATGATTTCTTG
*
33108172 AAAATAATTTCTTG
1 AAAATGATTTCTTG
33108186 AAAAATGATTT-TTGG
1 -AAAATGATTTCTT-G
33108201 AAAATGATTT
1 AAAATGATTT
33108211 ACTTTTCTGG
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
14 34 0.77
15 10 0.23
ACGTcount: A:0.40, C:0.03, G:0.15, T:0.42
Consensus pattern (14 bp):
AAAATGATTTCTTG
Found at i:33108201 original size:29 final size:28
Alignment explanation
Indices: 33108151--33108210 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 28
33108141 GGTAAAATGT
33108151 TTTCTTGAAAATGATTTATGGAAAATAA
1 TTTCTTGAAAATGATTTATGGAAAATAA
* *
33108179 TTTCTTGAAAAATGATTTTTGGAAAATGA
1 TTTCTTG-AAAATGATTTATGGAAAATAA
33108208 TTT
1 TTT
33108211 ACTTTTCTGG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 7 0.24
29 22 0.76
ACGTcount: A:0.38, C:0.03, G:0.15, T:0.43
Consensus pattern (28 bp):
TTTCTTGAAAATGATTTATGGAAAATAA
Found at i:33111745 original size:15 final size:16
Alignment explanation
Indices: 33111725--33111755 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
33111715 GTTTTTATCT
33111725 TATATATGAT-TAAAA
1 TATATATGATCTAAAA
33111740 TATATATGATCTAAAA
1 TATATATGATCTAAAA
33111756 GCAAGAAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.52, C:0.03, G:0.06, T:0.39
Consensus pattern (16 bp):
TATATATGATCTAAAA
Found at i:33113098 original size:22 final size:23
Alignment explanation
Indices: 33113056--33113098 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
33113046 TTTCAAAAAT
*
33113056 TAAACATAATATAATATTTAACA
1 TAAAAATAATATAATATTTAACA
*
33113079 TAAAAATAA-ATATTATTTAA
1 TAAAAATAATATAATATTTAA
33113099 TTAAAATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (23 bp):
TAAAAATAATATAATATTTAACA
Found at i:33113191 original size:43 final size:42
Alignment explanation
Indices: 33113133--33113336 Score: 203
Period size: 43 Copynumber: 4.8 Consensus size: 42
33113123 GATCATTATT
* * *
33113133 TTTAGCGGCGTTTGTGAGAAAAGTGCCACTAAAGGTTATGATT
1 TTTAGCGGCGTTTGTGA-AAAAGCGCCACTAAAGGTCATGATC
* ** *
33113176 TTTAGCGGTGTTTGTGAAAAATGCGCCGTTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGTGAAAAA-GCGCCACTAAAGGTCATGATC
* * * * *
33113219 TTTAGCGGCGTTTTCTAAAAAAGCG-AAGCTAAAGGTTATCATC
1 TTTAGCGGCG-TTTGTGAAAAAGCGCCA-CTAAAGGTCATGATC
* *
33113262 TTTAGCGGCGTTTGCGAAAAAGCGCCACTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGTGAAAAAGCGCCACTAAAGGTCATGATC
* * *
33113304 TTTAGCGACGTTTGCGAGAAAAGTGCCACTAAA
1 TTTAGCGGCGTTTGTGA-AAAAGCGCCACTAAA
33113337 ACTGCGTTTG
Statistics
Matches: 131, Mismatches: 25, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
42 43 0.33
43 79 0.60
44 9 0.07
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (42 bp):
TTTAGCGGCGTTTGTGAAAAAGCGCCACTAAAGGTCATGATC
Found at i:33113336 original size:85 final size:86
Alignment explanation
Indices: 33113133--33113336 Score: 268
Period size: 86 Copynumber: 2.4 Consensus size: 86
33113123 GATCATTATT
* * * * *
33113133 TTTAGCGGCGTTTGTGAGAAAAGTGCCACTAAAGGTTATGATTTTTAGCGGTGTTTGTGAAAAAT
1 TTTAGCGGCGTTTGCGAGAAAAGTGCCACTAAAGGTTATCATCTTTAGCGGCGTTTGCGAAAAAT
**
33113198 GCGCCGTTAAAGGTCATGGTC
66 GCGCCACTAAAGGTCATGGTC
* * * * *
33113219 TTTAGCGGCGTTTTCTAAAAAAGCG-AAGCTAAAGGTTATCATCTTTAGCGGCGTTTGCGAAAAA
1 TTTAGCGGCGTTTGCGAGAAAAGTGCCA-CTAAAGGTTATCATCTTTAGCGGCGTTTGCGAAAAA
33113283 -GCGCCACTAAAGGTCATGGTC
65 TGCGCCACTAAAGGTCATGGTC
*
33113304 TTTAGCGACGTTTGCGAGAAAAGTGCCACTAAA
1 TTTAGCGGCGTTTGCGAGAAAAGTGCCACTAAA
33113337 ACTGCGTTTG
Statistics
Matches: 98, Mismatches: 18, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
85 45 0.46
86 53 0.54
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (86 bp):
TTTAGCGGCGTTTGCGAGAAAAGTGCCACTAAAGGTTATCATCTTTAGCGGCGTTTGCGAAAAAT
GCGCCACTAAAGGTCATGGTC
Found at i:33113397 original size:72 final size:71
Alignment explanation
Indices: 33113269--33113407 Score: 197
Period size: 72 Copynumber: 1.9 Consensus size: 71
33113259 ATCTTTAGCG
* *
33113269 GCGTTTGCGAAAAAGCGCCACTAAAGGTCATGGTCTTTAGCGACGTTTGCGAGAAAAGTGCCACT
1 GCGTTTGCGAAAAAGCGCCACTAAAGGTCATGGTCTTTAGCGACATTTGCGAGAAAAATGCCACT
33113334 AAAACT
66 AAAACT
* * ****
33113340 GCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCATTTTTTCGAAAAATGCCAC
1 GCGTTTGCG-AAAAAGCGCCACTAAAGGTCATGGTCTTTAGCGACATTTGCGAGAAAAATGCCAC
33113405 TAA
65 TAA
33113408 TTTTTGCGGC
Statistics
Matches: 59, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
71 9 0.15
72 50 0.85
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.24
Consensus pattern (71 bp):
GCGTTTGCGAAAAAGCGCCACTAAAGGTCATGGTCTTTAGCGACATTTGCGAGAAAAATGCCACT
AAAACT
Found at i:33117871 original size:16 final size:16
Alignment explanation
Indices: 33117852--33117882 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
33117842 CTTCTTCACT
33117852 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
33117868 TACTTACTTACTTAA
1 TACTCACTTACTTAA
33117883 TCAAGTTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:33118248 original size:108 final size:110
Alignment explanation
Indices: 33118121--33118321 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
33118111 ATCCTTTTAA
* * *
33118121 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACTAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
33118184 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
33118229 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
33118294 TGCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
33118322 TATCCTTAAA
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 1 0.01
108 49 0.58
109 6 0.07
110 28 0.33
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:33118264 original size:55 final size:53
Alignment explanation
Indices: 33118121--33118328 Score: 231
Period size: 55 Copynumber: 3.8 Consensus size: 53
33118111 ATCCTTTTAA
* *
33118121 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAG
* * * *
33118174 AACTCACTAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG
* * * * *
33118228 TAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGA-
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAG
*
33118282 AACCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 AA-CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTA-CCTT
33118329 AAACCCTAAT
Statistics
Matches: 128, Mismatches: 20, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
52 2 0.02
53 45 0.35
54 9 0.07
55 70 0.55
56 2 0.02
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (53 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAG
Found at i:33123507 original size:30 final size:30
Alignment explanation
Indices: 33123463--33123534 Score: 92
Period size: 30 Copynumber: 2.4 Consensus size: 30
33123453 ATTGCATATT
* *
33123463 ATTT-TATGTATATATTTTCTTTTAAATCA
1 ATTTATATTTATATATTCTCTTTTAAATCA
*
33123492 ATTTATATTTATATATTCTCTTTTAAATCT
1 ATTTATATTTATATATTCTCTTTTAAATCA
*
33123522 ATATATAATTTAT
1 ATTTAT-ATTTAT
33123535 CTCTTTTAAG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
29 4 0.11
30 27 0.73
31 6 0.16
ACGTcount: A:0.33, C:0.07, G:0.01, T:0.58
Consensus pattern (30 bp):
ATTTATATTTATATATTCTCTTTTAAATCA
Found at i:33126874 original size:133 final size:133
Alignment explanation
Indices: 33126635--33126912 Score: 385
Period size: 133 Copynumber: 2.1 Consensus size: 133
33126625 CGAGAGAGAC
* *
33126635 TGAAGATTGTAGATATTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATGGCAAATCTTATTT
1 TGAAGATTGTAGATATTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCT
33126700 TCCCGAGGTAGCAGGGGAGAAAATTTTAGCCACCAGCCTTATCTCTCTAAGGTGGCAAGAGAATA
66 TCCCGAGGTAGCAGGGGAGAAAATTTTAGCCACCAGCCTTATCTCTCTAAGGTGGCAAGAGAATA
33126765 GGT
131 GGT
* * * *
33126768 TGAAGTTTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCGGATCGAAGATGGCGAATCTTATCT
1 TGAAGATTGTAGATATTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCT
* * * * * * * * * * **
33126833 TGCCGAGGTAGCAGGGGAGTAGATTTTAGCCACTAGTCTTATTTCTTTGAGGTAGCAAGGGAGCA
66 TCCCGAGGTAGCAGGGGAGAAAATTTTAGCCACCAGCCTTATCTCTCTAAGGTGGCAAGAGAATA
*
33126898 GGC
131 GGT
33126901 TGAAGATTGTAG
1 TGAAGATTGTAG
33126913 CCTTATCTTC
Statistics
Matches: 125, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
133 125 1.00
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (133 bp):
TGAAGATTGTAGATATTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCT
TCCCGAGGTAGCAGGGGAGAAAATTTTAGCCACCAGCCTTATCTCTCTAAGGTGGCAAGAGAATA
GGT
Found at i:33126918 original size:44 final size:44
Alignment explanation
Indices: 33126870--33126956 Score: 106
Period size: 44 Copynumber: 2.0 Consensus size: 44
33126860 AGCCACTAGT
* * *
33126870 CTTAT-TTCTTTGAGGTAGC-AAGGGAGCAGGCTGAAGATTGTAGC
1 CTTATCTTC-TTGAGGTA-CAAAGGGAACAGACCGAAGATTGTAGC
*
33126914 CTTATCTTCTTGAGGTACAAAGGGAACATACCGAAGATTGTAG
1 CTTATCTTCTTGAGGTACAAAGGGAACAGACCGAAGATTGTAG
33126957 ATCTGATCTC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
43 1 0.03
44 33 0.89
45 3 0.08
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.29
Consensus pattern (44 bp):
CTTATCTTCTTGAGGTACAAAGGGAACAGACCGAAGATTGTAGC
Found at i:33141184 original size:27 final size:27
Alignment explanation
Indices: 33141153--33141330 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
33141143 TAAATTGTAC
33141153 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
33141180 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
33141206 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
33141234 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * *
33141262 AGCACTAAGTGTGCAATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
33141289 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
33141316 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
33141331 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 105 0.83
28 22 0.17
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:33141267 original size:82 final size:81
Alignment explanation
Indices: 33141154--33141309 Score: 226
Period size: 82 Copynumber: 1.9 Consensus size: 81
33141144 AAATTGTACA
* *
33141154 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAA-ATGAATATG-ATGCACTAAGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGC-AATATGAATACGTA-GCACTAAGT
33141217 GTGCGAATTGACCATGCG
64 GTGCGAATTGACCATGCG
* *
33141235 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCAATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCAATATGAATACGTAGCACTAAGTG
*
33141300 TGCGAGTTGA
65 TGCGAATTGA
33141310 TTATATAGCA
Statistics
Matches: 67, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
81 17 0.25
82 49 0.73
83 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCAATATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:33141321 original size:82 final size:81
Alignment explanation
Indices: 33141150--33141330 Score: 222
Period size: 82 Copynumber: 2.2 Consensus size: 81
33141140 GATTAAATTG
* *
33141150 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
33141215 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * *
33141231 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGC-AATTTGATTACG-TAGCAC
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAA-ATGAATACGAT-GCAC
* **
33141294 TAAGTGTGCGAGTTGATTA
63 TAAGTGTGCGAATTGACCA
* *
33141313 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
33141331 GACTCAATAT
Statistics
Matches: 84, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
81 20 0.24
82 64 0.76
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:33148437 original size:18 final size:18
Alignment explanation
Indices: 33148416--33148454 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
33148406 GATTGAGAGT
*
33148416 GAAAAGAAATGTGAAACA
1 GAAAAGAAATGTGAAAAA
*
33148434 GAAAAGAAATTTGAAAAA
1 GAAAAGAAATGTGAAAAA
33148452 GAA
1 GAA
33148455 GTTGAAGAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.64, C:0.03, G:0.21, T:0.13
Consensus pattern (18 bp):
GAAAAGAAATGTGAAAAA
Found at i:33154170 original size:27 final size:27
Alignment explanation
Indices: 33154139--33154316 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
33154129 TAAATTGTAC
33154139 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
33154166 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
33154192 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
33154220 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * *
33154248 AGCACTAAGTGTGCAATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
33154275 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
33154302 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
33154317 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 105 0.83
28 22 0.17
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:33154253 original size:82 final size:81
Alignment explanation
Indices: 33154140--33154295 Score: 226
Period size: 82 Copynumber: 1.9 Consensus size: 81
33154130 AAATTGTACA
* *
33154140 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAA-ATGAATATG-ATGCACTAAGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGC-AATATGAATACGTA-GCACTAAGT
33154203 GTGCGAATTGACCATGCG
64 GTGCGAATTGACCATGCG
* *
33154221 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCAATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCAATATGAATACGTAGCACTAAGTG
*
33154286 TGCGAGTTGA
65 TGCGAATTGA
33154296 TTATATAGCA
Statistics
Matches: 67, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
81 17 0.25
82 49 0.73
83 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCAATATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:33154307 original size:82 final size:81
Alignment explanation
Indices: 33154136--33154316 Score: 222
Period size: 82 Copynumber: 2.2 Consensus size: 81
33154126 GATTAAATTG
* *
33154136 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
33154201 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * *
33154217 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGC-AATTTGATTACG-TAGCAC
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAA-ATGAATACGAT-GCAC
* **
33154280 TAAGTGTGCGAGTTGATTA
63 TAAGTGTGCGAATTGACCA
* *
33154299 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
33154317 GACTCAATAT
Statistics
Matches: 84, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
81 20 0.24
82 64 0.76
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:33169704 original size:42 final size:42
Alignment explanation
Indices: 33169615--33169720 Score: 110
Period size: 42 Copynumber: 2.5 Consensus size: 42
33169605 GTACTACCGA
* *
33169615 GATTTCGTATAAGACCATATCTAGGATATGGCATTAGTATGT
1 GATTTCGTATAAGACCATATCTAGGACATGGCATGAGTATGT
* *
33169657 GATTTCGTATAAGACCATGTC-AGGGACATGGCGTCGA-TATGAT
1 GATTTCGTATAAGACCATATCTA-GGACATGGCAT-GAGTATG-T
* *
33169700 -ATTTCATGTAAGACCATATCT
1 GATTTCGTATAAGACCATATCT
33169721 GGGGTATGGC
Statistics
Matches: 53, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
41 1 0.02
42 50 0.94
43 2 0.04
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (42 bp):
GATTTCGTATAAGACCATATCTAGGACATGGCATGAGTATGT
Found at i:33171589 original size:23 final size:23
Alignment explanation
Indices: 33171553--33171638 Score: 95
Period size: 23 Copynumber: 3.8 Consensus size: 23
33171543 GGACTCACCA
* *
33171553 CAGCTCGTATGAGCTTACTGATT
1 CAGCTCATAAGAGCTTACTGATT
*
33171576 CAGCTCATAAGAGCTTACTGTTT
1 CAGCTCATAAGAGCTTACTGATT
* * *
33171599 CATCTCATTAGAGCTTA-TCATT
1 CAGCTCATAAGAGCTTACTGATT
33171621 CAGCTCA-ATAGAGCTTAC
1 CAGCTCATA-AGAGCTTAC
33171639 CGTTTCAACT
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
22 17 0.33
23 35 0.67
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.34
Consensus pattern (23 bp):
CAGCTCATAAGAGCTTACTGATT
Found at i:33171634 original size:45 final size:46
Alignment explanation
Indices: 33171563--33171662 Score: 132
Period size: 45 Copynumber: 2.2 Consensus size: 46
33171553 CAGCTCGTAT
* * * *
33171563 GAGCTTACTGATTCAGCTCATAAGAGCTTACTGTTTCATCTCATTA
1 GAGCTTACTCATTCAGCTCATAAGAGCTTACCGTTTCAACTCAATA
33171609 GAGCTTA-TCATTCAGCTCA-ATAGAGCTTACCGTTTCAACTCAATA
1 GAGCTTACTCATTCAGCTCATA-AGAGCTTACCGTTTCAACTCAATA
*
33171654 GAGTTTACT
1 GAGCTTACT
33171663 GTTCAACTCG
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
44 1 0.02
45 38 0.81
46 8 0.17
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (46 bp):
GAGCTTACTCATTCAGCTCATAAGAGCTTACCGTTTCAACTCAATA
Found at i:33171650 original size:23 final size:23
Alignment explanation
Indices: 33171563--33171686 Score: 94
Period size: 23 Copynumber: 5.5 Consensus size: 23
33171553 CAGCTCGTAT
* *
33171563 GAGCTTACTGATTCAGCTC-ATAA
1 GAGCTTACCGATTCAACTCAAT-A
* * * *
33171586 GAGCTTACTGTTTCATCTCATTA
1 GAGCTTACCGATTCAACTCAATA
* *
33171609 GAGCTTATC-ATTCAGCTCAATA
1 GAGCTTACCGATTCAACTCAATA
*
33171631 GAGCTTACCGTTTCAACTCAATA
1 GAGCTTACCGATTCAACTCAATA
* * *
33171654 GAGTTTACTG-TTCAACTCGAA-G
1 GAGCTTACCGATTCAACTC-AATA
33171676 GAGCTTACCGA
1 GAGCTTACCGA
33171687 CCATGACTCG
Statistics
Matches: 81, Mismatches: 16, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
22 34 0.42
23 46 0.57
24 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (23 bp):
GAGCTTACCGATTCAACTCAATA
Found at i:33171670 original size:22 final size:23
Alignment explanation
Indices: 33171563--33171671 Score: 107
Period size: 23 Copynumber: 4.8 Consensus size: 23
33171553 CAGCTCGTAT
* *
33171563 GAGCTTACTGATTCAGCTC-ATAA
1 GAGCTTACTGTTTCAACTCAAT-A
* *
33171586 GAGCTTACTGTTTCATCTCATTA
1 GAGCTTACTGTTTCAACTCAATA
** *
33171609 GAGCTTA-TCATTCAGCTCAATA
1 GAGCTTACTGTTTCAACTCAATA
*
33171631 GAGCTTACCGTTTCAACTCAATA
1 GAGCTTACTGTTTCAACTCAATA
*
33171654 GAGTTTACTG-TTCAACTC
1 GAGCTTACTGTTTCAACTC
33171672 GAAGGAGCTT
Statistics
Matches: 71, Mismatches: 13, Indels: 5
0.80 0.15 0.06
Matches are distributed among these distances:
22 26 0.37
23 44 0.62
24 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.35
Consensus pattern (23 bp):
GAGCTTACTGTTTCAACTCAATA
Found at i:33177336 original size:18 final size:18
Alignment explanation
Indices: 33177315--33177364 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 18
33177305 AAAGTACATA
*
33177315 AAAAAGATAAATAAAGAT
1 AAAAAGATAAATAAAAAT
*
33177333 AAAAGGGA-AAATAAAAAT
1 AAAA-AGATAAATAAAAAT
33177351 AAAAA-ATAAA-AAAA
1 AAAAAGATAAATAAAA
33177365 TGAAAAGTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
16 5 0.19
17 3 0.11
18 17 0.63
19 2 0.07
ACGTcount: A:0.78, C:0.00, G:0.10, T:0.12
Consensus pattern (18 bp):
AAAAAGATAAATAAAAAT
Found at i:33179106 original size:27 final size:27
Alignment explanation
Indices: 33179061--33179113 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
33179051 GCAAAGGGAA
33179061 AAAGAAGGAAAAAGAAAGGAGAGAAGGG
1 AAAGAAGGAAAAAGAAAGGAGA-AAGGG
33179089 AAAG-AGG-AAAAGAGAAGGAGAAAGG
1 AAAGAAGGAAAAAGA-AAGGAGAAAGG
33179114 AGAGTTGAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 10 0.42
27 10 0.42
28 4 0.17
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00
Consensus pattern (27 bp):
AAAGAAGGAAAAAGAAAGGAGAAAGGG
Found at i:33187747 original size:42 final size:42
Alignment explanation
Indices: 33187639--33187803 Score: 120
Period size: 43 Copynumber: 3.9 Consensus size: 42
33187629 ATCATAAACA
* * * *
33187639 AATACAATGCCGACGTCCCAGAC-GTGGTCTTACATGTAATTC
1 AATACGATGCCGATGTCCCAGACAG-GGTCTTACACGAAATTC
* ** * *
33187681 AATATCGAAGCCTTTGTCCTAGACAGGGTCTTACACGAAATTG
1 AATA-CGATGCCGATGTCCCAGACAGGGTCTTACACGAAATTC
* * * *
33187724 GATACGATGCCGATGTCCCAGACATGGTCTTATACATAAATCTC
1 AATACGATGCCGATGTCCCAGACAGGGTCTTACAC-GAAAT-TC
* * *
33187768 AAT-TGAGGCCTG-TGTCCCAGACATGGTCTTACACGA
1 AATACGATGCC-GATGTCCCAGACAGGGTCTTACACGA
33187804 TGTCTCAGAC
Statistics
Matches: 95, Mismatches: 23, Indels: 10
0.74 0.18 0.08
Matches are distributed among these distances:
42 30 0.32
43 60 0.63
44 5 0.05
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (42 bp):
AATACGATGCCGATGTCCCAGACAGGGTCTTACACGAAATTC
Found at i:33187790 original size:85 final size:85
Alignment explanation
Indices: 33187640--33187803 Score: 208
Period size: 85 Copynumber: 1.9 Consensus size: 85
33187630 TCATAAACAA
* * * *
33187640 ATACAATGCCGACGTCCCAGACGTGGTCTTACATGTAATTCAATATCGAAGCCTTTGTCCTAGAC
1 ATACAATGCCGACGTCCCAGACATGGTCTTACATGAAATTCAATATCGAAGCCTGTGTCCCAGAC
33187705 AGGGTCTTACACGAAATTGG
66 AGGGTCTTACACGAAATTGG
* * *
33187725 ATACGATGCCGATGTCCCAGACATGGTCTTATACAT-AAATCTCAAT-T-GAGGCCTGTGTCCCA
1 ATACAATGCCGACGTCCCAGACATGGTC-T-TACATGAAAT-TCAATATCGAAGCCTGTGTCCCA
*
33187787 GACATGGTCTTACACGA
63 GACAGGGTCTTACACGA
33187804 TGTCTCAGAC
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
85 53 0.78
86 5 0.07
87 10 0.15
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (85 bp):
ATACAATGCCGACGTCCCAGACATGGTCTTACATGAAATTCAATATCGAAGCCTGTGTCCCAGAC
AGGGTCTTACACGAAATTGG
Found at i:33200357 original size:38 final size:38
Alignment explanation
Indices: 33200306--33200420 Score: 149
Period size: 38 Copynumber: 3.0 Consensus size: 38
33200296 AGCACTCGAT
*
33200306 ATATATCCGGGTTAAGTCCCACAGGCTTCGTGCTGGTA
1 ATATATCCGGGTTAAGTCCCGCAGGCTTCGTGCTGGTA
* * *
33200344 ATATATCCGGGTTAAATCCCGTAGGCTTCGTGTTGGTA
1 ATATATCCGGGTTAAGTCCCGCAGGCTTCGTGCTGGTA
* * *
33200382 TTATATCCGAGCTTAAAGTCCCGCAGGCTTTGTGCTGGT
1 ATATATCCG-GGTT-AAGTCCCGCAGGCTTCGTGCTGGT
33200421 GACTGGATTT
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
38 42 0.65
39 3 0.05
40 20 0.31
ACGTcount: A:0.20, C:0.22, G:0.26, T:0.32
Consensus pattern (38 bp):
ATATATCCGGGTTAAGTCCCGCAGGCTTCGTGCTGGTA
Found at i:33212133 original size:46 final size:45
Alignment explanation
Indices: 33212083--33212255 Score: 199
Period size: 46 Copynumber: 3.8 Consensus size: 45
33212073 TGGTTGAGCA
33212083 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * * *
33212129 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTAACTGGGCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATG-GA-TGCGAAG
*
33212176 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*
33212222 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
33212256 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 13, Indels: 16
0.79 0.10 0.12
Matches are distributed among these distances:
44 4 0.04
45 4 0.04
46 61 0.58
47 31 0.29
48 2 0.02
49 4 0.04
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:33212239 original size:93 final size:93
Alignment explanation
Indices: 33212080--33212250 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
33212070 GGATGGTTGA
* *
33212080 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
33212145 TGAGTCCGAGTTCGTGAAATGTAACTGG
66 TGAGTCCGAGTTCGTGAAATGTAACTGG
*
33212173 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
33212237 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
33212251 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTGG
Found at i:33219582 original size:22 final size:22
Alignment explanation
Indices: 33219533--33219609 Score: 66
Period size: 23 Copynumber: 3.4 Consensus size: 22
33219523 TCAGCTTATA
* * *
33219533 AGAGCTTACTATTTTAACTCATT
1 AGAGCTTACCA-TTCAACTCAAT
*
33219556 GGAGCTTACCATTCAACTCAAT
1 AGAGCTTACCATTCAACTCAAT
* *
33219578 AGAGCTTACCGTTTCAGCTCAAT
1 AGAGCTTACC-ATTCAACTCAAT
33219601 CA-AGCTTAC
1 -AGAGCTTAC
33219610 TGTTCATCTC
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
22 18 0.40
23 26 0.58
24 1 0.02
ACGTcount: A:0.30, C:0.25, G:0.13, T:0.32
Consensus pattern (22 bp):
AGAGCTTACCATTCAACTCAAT
Found at i:33231099 original size:20 final size:18
Alignment explanation
Indices: 33231083--33231181 Score: 60
Period size: 18 Copynumber: 5.5 Consensus size: 18
33231073 TATCAATATC
33231083 ATTCAGTAATGATCAATT
1 ATTCAGTAATGATCAATT
* **
33231101 ATTCAGTAA-CAGTTGATT
1 ATTCAGTAATGA-TCAATT
* *
33231119 ATTCAGTAA-CAGTCATTT
1 ATTCAGTAATGA-TCAATT
* *
33231137 ATTAAGTAA-CAGTCAATT
1 ATTCAGTAATGA-TCAATT
* * *
33231155 ATTTAGTAATAATCAGTT
1 ATTCAGTAATGATCAATT
33231173 ATTCAGTAA
1 ATTCAGTAA
33231182 CAGTCTTTTA
Statistics
Matches: 67, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
17 1 0.01
18 65 0.97
19 1 0.01
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.38
Consensus pattern (18 bp):
ATTCAGTAATGATCAATT
Found at i:33231106 original size:18 final size:18
Alignment explanation
Indices: 33231095--33231230 Score: 164
Period size: 18 Copynumber: 7.6 Consensus size: 18
33231085 TCAGTAATGA
33231095 TCAATTATTCAGTAACAG
1 TCAATTATTCAGTAACAG
**
33231113 TTGATTATTCAGTAACAG
1 TCAATTATTCAGTAACAG
* *
33231131 TCATTTATTAAGTAACAG
1 TCAATTATTCAGTAACAG
* * *
33231149 TCAATTATTTAGTAATAA
1 TCAATTATTCAGTAACAG
*
33231167 TCAGTTATTCAGTAACAG
1 TCAATTATTCAGTAACAG
** *
33231185 TCTTTTATTCAGTGACAG
1 TCAATTATTCAGTAACAG
*
33231203 TTAATTATTCAGTAACAG
1 TCAATTATTCAGTAACAG
33231221 TCAATTATTC
1 TCAATTATTC
33231231 GGTACCTTTA
Statistics
Matches: 96, Mismatches: 22, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 96 1.00
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.40
Consensus pattern (18 bp):
TCAATTATTCAGTAACAG
Found at i:33231460 original size:12 final size:12
Alignment explanation
Indices: 33231443--33231467 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
33231433 AGTGTCGAAT
33231443 CGATAACAGTAA
1 CGATAACAGTAA
33231455 CGATAACAGTAA
1 CGATAACAGTAA
33231467 C
1 C
33231468 AGTAGTCGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.20, G:0.16, T:0.16
Consensus pattern (12 bp):
CGATAACAGTAA
Found at i:33231462 original size:51 final size:45
Alignment explanation
Indices: 33231359--33231465 Score: 155
Period size: 45 Copynumber: 2.4 Consensus size: 45
33231349 GTAACGGTAG
*
33231359 CAGTAACAGTAACAGTATTCGACACACAAAGTACTGAATCTATAA
1 CAGTAACAGTAACAGTATTCGACACACAAAGTACTGAATCGATAA
* *
33231404 CAGTAACAGTAATAGTATTCGACACACAAAGT-GTCGAATCGATAA
1 CAGTAACAGTAACAGTATTCGACACACAAAGTACT-GAATCGATAA
33231449 CAGTAAC-GATAACAGTA
1 CAGTAACAG-TAACAGTA
33231466 ACAGTAGTCG
Statistics
Matches: 56, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
44 2 0.04
45 54 0.96
ACGTcount: A:0.44, C:0.19, G:0.16, T:0.21
Consensus pattern (45 bp):
CAGTAACAGTAACAGTATTCGACACACAAAGTACTGAATCGATAA
Found at i:33244062 original size:46 final size:46
Alignment explanation
Indices: 33244002--33244270 Score: 266
Period size: 46 Copynumber: 5.8 Consensus size: 46
33243992 TTGTTGAGCA
* *
33244002 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGG
* * *
33244048 TCTGAACTCGTTGAGTTGAGTCCGAGTT--C-GA-GAGATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCAA--AGG
*
33244093 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGG
* *
33244141 TCCGAACTCGTTGAGTTGAGTCCGAGTT---TGA-GAGATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCAA--AGG
* * *
33244186 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGG
* * *
33244234 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
33244271 GCGGGTTACA
Statistics
Matches: 184, Mismatches: 21, Indels: 36
0.76 0.09 0.15
Matches are distributed among these distances:
42 2 0.01
43 15 0.08
44 1 0.01
45 4 0.02
46 87 0.47
47 55 0.30
48 4 0.02
49 1 0.01
50 13 0.07
51 2 0.01
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGG
Found at i:33244116 original size:47 final size:47
Alignment explanation
Indices: 33244051--33244216 Score: 225
Period size: 47 Copynumber: 3.6 Consensus size: 47
33244041 GCAAATGTCT
33244051 GAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCC
* * *
33244098 GAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCAA--ATG--TCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCGA--GA--GATGTAACTAGGCATCC
*
33244144 GAACTCGTTGAGTTGAGTCCGAGTTTGAGAGATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCC
33244191 GAACTCGTTGAGTTGAGTCCGAGTTC
1 GAACTCGTTGAGTTGAGTCCGAGTTC
33244217 ACCTATGGAT
Statistics
Matches: 102, Mismatches: 8, Indels: 18
0.80 0.06 0.14
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 29 0.28
47 55 0.54
48 3 0.03
50 6 0.06
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (47 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCC
Found at i:33244158 original size:93 final size:93
Alignment explanation
Indices: 33243999--33244263 Score: 458
Period size: 93 Copynumber: 2.8 Consensus size: 93
33243989 GGATTGTTGA
* *
33243999 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
33244064 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
33244092 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
*
33244157 TGAGTCCGAGTTTGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * * * *
33244185 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
33244250 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
33244264 CTTATGGGCG
Statistics
Matches: 163, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 163 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:33249587 original size:13 final size:13
Alignment explanation
Indices: 33249569--33249596 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
33249559 GGGTAAGGGT
33249569 GTTACATTTAGTG
1 GTTACATTTAGTG
33249582 GTTACATTTAGTG
1 GTTACATTTAGTG
33249595 GT
1 GT
33249597 ATCAGAGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.07, G:0.25, T:0.46
Consensus pattern (13 bp):
GTTACATTTAGTG
Found at i:33258927 original size:16 final size:16
Alignment explanation
Indices: 33258906--33258937 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
33258896 AGAGAAAAAC
*
33258906 CAAAAATAAAAATAAA
1 CAAAAACAAAAATAAA
33258922 CAAAAACAAAAATAAA
1 CAAAAACAAAAATAAA
33258938 TTAAGATAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.81, C:0.09, G:0.00, T:0.09
Consensus pattern (16 bp):
CAAAAACAAAAATAAA
Found at i:33261036 original size:17 final size:18
Alignment explanation
Indices: 33261000--33261037 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
33260990 ATGCATTTCG
33261000 TACATATATTTTTTTGTA
1 TACATATATTTTTTTGTA
33261018 TACATA-ATTATTTTT-TA
1 TACATATATT-TTTTTGTA
33261035 TAC
1 TAC
33261038 GATTTATAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.32, C:0.08, G:0.03, T:0.58
Consensus pattern (18 bp):
TACATATATTTTTTTGTA
Found at i:33273597 original size:13 final size:13
Alignment explanation
Indices: 33273579--33273603 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33273569 TAATGGTATA
33273579 TTGAATCCATGAC
1 TTGAATCCATGAC
33273592 TTGAATCCATGA
1 TTGAATCCATGA
33273604 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:33274188 original size:27 final size:27
Alignment explanation
Indices: 33274153--33274331 Score: 191
Period size: 27 Copynumber: 6.6 Consensus size: 27
33274143 TTAAATTGTA
33274153 TAGCACTAAGTGTGCGATATGACTATG
1 TAGCACTAAGTGTGCGATATGACTATG
* * *
33274180 TTGCACTAAGTGTGCGAAATGAATATG
1 TAGCACTAAGTGTGCGATATGACTATG
*
33274207 -ATGCACTAAGTGTGCGA-ATTGACCATG
1 TA-GCACTAAGTGTGCGATA-TGACTATG
** *
33274234 CGGCACTAAGTGTGCGAGTTTGACTATG
1 TAGCACTAAGTGTGCGA-TATGACTATG
* * *
33274262 TAGCACTAAGTGTGCGATTTGATTACG
1 TAGCACTAAGTGTGCGATATGACTATG
* * *
33274289 TAGCACTAAGTGTGCGAGATGATTATA
1 TAGCACTAAGTGTGCGATATGACTATG
*
33274316 TAGCACTGAGTGTGCG
1 TAGCACTAAGTGTGCG
33274332 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 18, Indels: 10
0.82 0.11 0.06
Matches are distributed among these distances:
26 1 0.01
27 106 0.82
28 22 0.17
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (27 bp):
TAGCACTAAGTGTGCGATATGACTATG
Found at i:33274269 original size:82 final size:81
Alignment explanation
Indices: 33274155--33274305 Score: 223
Period size: 82 Copynumber: 1.9 Consensus size: 81
33274145 AAATTGTATA
* *
33274155 GCACTAAGTGTGCGATATGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
33274219 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
33274236 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TATGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
33274301 TGCGA
65 TGCGA
33274306 GATGATTATA
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
81 15 0.24
82 46 0.74
83 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:33274322 original size:82 final size:81
Alignment explanation
Indices: 33274151--33274331 Score: 213
Period size: 82 Copynumber: 2.2 Consensus size: 81
33274141 GATTAAATTG
* *
33274151 TATAGCACTAAGTGTGCGATATGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TATAGCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
33274216 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
*** * ** *
33274232 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TATAGCACTAAGTGTGCGA-TATGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
**
33274296 AAGTGTGCGAGA-TGATTA
64 AAGTGTGCGA-ATTGACCA
*
33274314 TATAGCACTGAGTGTGCG
1 TATAGCACTAAGTGTGCG
33274332 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
81 17 0.21
82 64 0.78
83 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
TATAGCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:33276841 original size:132 final size:133
Alignment explanation
Indices: 33276642--33276899 Score: 378
Period size: 133 Copynumber: 1.9 Consensus size: 133
33276632 GCGACATTGG
* * *
33276642 TGAAGATTAAAGATCTTATCTCCCTGAAGTTGCAGTGAAGCAGATCGAAAATGGTGAATCTTATC
1 TGAAGATTAAAGATCTTATCTCCCTAAAGTAGCAG-GAAGCAGATCGAAAATGGCGAATCTTATC
*
33276707 TCCATGTATTGGCAATGGAGCAAATTTTA-CCACCAGCCTTATCTCTCTAAGGTAGCAAGAAAGT
65 TCCATGTATCGGCAATGGAGCAAATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGCAAGAAAGT
33276771 AGAC
130 AGAC
* *
33276775 TGAAGATTGAAGATCTTATCTCCCTAAATAGTAGCA-G-AGCAGATCGAATATGGCGAATCTTAT
1 TGAAGATTAAAGATCTTATCTCCCT-AA-AGTAGCAGGAAGCAGATCGAAAATGGCGAATCTTAT
** * *
33276838 CTCCATGTATCGGCAATGGAGCGGATTTTAGCCACTAGCCTTATCTCTCTGAGGTAGCAAGA
64 CTCCATGTATCGGCAATGGAGCAAATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGCAAGA
33276900 GAGCAGGTTG
Statistics
Matches: 112, Mismatches: 10, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
132 51 0.46
133 54 0.48
134 1 0.01
135 6 0.05
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.28
Consensus pattern (133 bp):
TGAAGATTAAAGATCTTATCTCCCTAAAGTAGCAGGAAGCAGATCGAAAATGGCGAATCTTATCT
CCATGTATCGGCAATGGAGCAAATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGCAAGAAAGTA
GAC
Found at i:33276949 original size:132 final size:132
Alignment explanation
Indices: 33276678--33276930 Score: 332
Period size: 132 Copynumber: 1.9 Consensus size: 132
33276668 AAGTTGCAGT
* *
33276678 GAAGCAGATCGAAAATGGTGAATCTTATCTCCATGTATTGGCAATGGAGCAAATTTTACCACCAG
1 GAAGCAGATCGAAAATGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAAATTTTACCACCAG
* * *
33276743 CCTTATCTCTCTAAGGTAGCAAGAAAGTAGACTGAAGATTGAAGATCTTATCTCCCTAAATAGTA
66 CCTTATCTCTCTAAGGTAGCAAGAAAGCAGACTGAAGA-TAAAGATCTTATCTACCTAAATAGTA
*
33276808 GCA
130 ACA
* ** *
33276811 G-AGCAGATCGAATATGGCGAATCTTATCTCCATGTATCGGCAATGGAGCGGATTTTAGCCACTA
1 GAAGCAGATCGAAAATGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAAATTTTA-CCACCA
* * **
33276875 GCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAA-A-AAAGAGTCTTATCTACCT
65 GCCTTATCTCTCTAAGGTAGCAAGAAAGCAGACTGAAGATAAAGA-TCTTATCTACCT
33276931 GAGGTAACAA
Statistics
Matches: 105, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
130 4 0.04
131 11 0.10
132 52 0.50
133 38 0.36
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (132 bp):
GAAGCAGATCGAAAATGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAAATTTTACCACCAG
CCTTATCTCTCTAAGGTAGCAAGAAAGCAGACTGAAGATAAAGATCTTATCTACCTAAATAGTAA
CA
Found at i:33276962 original size:176 final size:177
Alignment explanation
Indices: 33276756--33277458 Score: 832
Period size: 180 Copynumber: 3.9 Consensus size: 177
33276746 TATCTCTCTA
* * * *
33276756 AGGTAGCAAGAAAGTAGACTGAAGATTGAAGATCTT-ATCTCC-CTAAATAGTAGCAGAGCAGAT
1 AGGTAACAAGAAAGCAGACTGAAGATTGAAGAT-TTCATCTCCTCGAAATAGTAGCGGAGCAGAT
* * * *
33276819 CGAATATGGCGAATCTTATCTCCATGTATCGGCAATGGAGCGGATTTTAGCCA-CTAGCCTTATC
65 CGAAGATGGCTAATCTTATCTCCATGTATCGGCAATGGAGCAGATCTTAGCCATC-AGCCTTATC
*
33276883 TCTCTGAGGTAGCAAGAGAGCAGGTTGAAAAAAGAGTCTTATCTACCTG
129 TCTCTGAGGTAGCAAGAGAGCAGGTTGAAAAATGAGTCTTATCTACCTG
* * * *
33276932 AGGTAACAAGGAAGCAGACTGAGGATTGAAGATTTCATCTCCTCGAAGTTGTAGCGGAGCAGATC
1 AGGTAACAAGAAAGCAGACTGAAGATTGAAGATTTCATCTCCTCGAAATAGTAGCGGAGCAGATC
* * *
33276997 TTTGAAGATGGCTAATCTTATCTCCATGTATTGGCAATGGGGCAGATCTAAGCCATCAGCCTTAT
66 ---GAAGATGGCTAATCTTATCTCCATGTATCGGCAATGGAGCAGATCTTAGCCATCAGCCTTAT
* *
33277062 CTCTCTGAGGTAGCAAGAGAACAGGTTGAAGAATGAGTCTTATCCTTA--TG
128 CTCTCTGAGGTAGCAAGAGAGCAGGTTGAAAAATGAGTCTTAT-C-TACCTG
* * * * *
33277112 AGGTAGCAAGAAAGTAGACTGAAGATTGAAGATTTTATCTCC-CTAAACAGTAGCGGAGCAGATC
1 AGGTAACAAGAAAGCAGACTGAAGATTGAAGATTTCATCTCCTCGAAATAGTAGCGGAGCAGATC
* * * *
33277176 GAAGATGGCAAATCTTATCTCCATGTATCGAG-AATGGAGCGGATTTTAGCCA-CTGGCCTTATC
66 GAAGATGGCTAATCTTATCTCCATGTATCG-GCAATGGAGCAGATCTTAGCCATC-AGCCTTATC
* * * *
33277239 TCTCTGAGGTAACAGGAAAGCAGGTTGAAAAATGAGTCTTATCTTCCTG
129 TCTCTGAGGTAGCAAGAGAGCAGGTTGAAAAATGAGTCTTATCTACCTG
* * * * *
33277288 AGGTAACAAGGAAGCAGACTCAGGATTGAAGATTTCATCTCCTCGAAGTTA-CAGCGGAGCAGAT
1 AGGTAACAAGAAAGCAGACTGAAGATTGAAGATTTCATCTCCTCGAA-ATAGTAGCGGAGCAGA-
* * * *
33277352 CTTCGAAGGTGGCTAATCTTATCTCCATATATTGGCAATGG-GACAGATCTGAGCCATCAGCCTT
64 --TCGAAGATGGCTAATCTTATCTCCATGTATCGGCAATGGAG-CAGATCTTAGCCATCAGCCTT
* *
33277416 ATCTCTTTGAGGTAGCAAGAGAGCAGGTTGAAGAATGAGTCTT
126 ATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAAAATGAGTCTT
33277459 GTCTTTCTAA
Statistics
Matches: 444, Mismatches: 63, Indels: 36
0.82 0.12 0.07
Matches are distributed among these distances:
174 1 0.00
175 4 0.01
176 162 0.36
177 33 0.07
178 1 0.00
179 20 0.05
180 218 0.49
181 3 0.01
182 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (177 bp):
AGGTAACAAGAAAGCAGACTGAAGATTGAAGATTTCATCTCCTCGAAATAGTAGCGGAGCAGATC
GAAGATGGCTAATCTTATCTCCATGTATCGGCAATGGAGCAGATCTTAGCCATCAGCCTTATCTC
TCTGAGGTAGCAAGAGAGCAGGTTGAAAAATGAGTCTTATCTACCTG
Found at i:33277354 original size:356 final size:356
Alignment explanation
Indices: 33276754--33277502 Score: 1212
Period size: 356 Copynumber: 2.1 Consensus size: 356
33276744 CTTATCTCTC
* *
33276754 TAAGGTAGCAAGAAAGTAGACTGAAGATTGAAGATCTTATCTCCCTAAATAGTAGCAGAGCAGAT
1 TAAGGTAGCAAGAAAGTAGACTGAAGATTGAAGATTTTATCTCCCTAAACAGTAGCAGAGCAGAT
* *
33276819 CGAATATGGCGAATCTTATCTCCATGTATCGGCAATGGAGCGGATTTTAGCCACTAGCCTTATCT
66 CGAAGATGGCAAATCTTATCTCCATGTATCGGCAATGGAGCGGATTTTAGCCACTAGCCTTATCT
* *
33276884 CTCTGAGGTAGCAAGAGAGCAGGTTGAAAAAAGAGTCTTATCTACCTGAGGTAACAAGGAAGCAG
131 CTCTGAGGTAACAAGAAAGCAGGTTGAAAAAAGAGTCTTATCTACCTGAGGTAACAAGGAAGCAG
* ** *
33276949 ACTGAGGATTGAAGATTTCATCTCCTCGAAGTTGTAGCGGAGCAGATCTTTGAAGATGGCTAATC
196 ACTCAGGATTGAAGATTTCATCTCCTCGAAGTTACAGCGGAGCAGATCTTCGAAGATGGCTAATC
* *
33277014 TTATCTCCATGTATTGGCAATGGGGCAGATCTAAGCCATCAGCCTTATCTCTCTGAGGTAGCAAG
261 TTATCTCCATATATTGGCAATGGGACAGATCTAAGCCATCAGCCTTATCTCTCTGAGGTAGCAAG
33277079 AGAACAGGTTGAAGAATGAGTCTTATCCTTA
326 AGAACAGGTTGAAGAATGAGTCTTATCCTTA
* *
33277110 TGAGGTAGCAAGAAAGTAGACTGAAGATTGAAGATTTTATCTCCCTAAACAGTAGCGGAGCAGAT
1 TAAGGTAGCAAGAAAGTAGACTGAAGATTGAAGATTTTATCTCCCTAAACAGTAGCAGAGCAGAT
*
33277175 CGAAGATGGCAAATCTTATCTCCATGTATCGAG-AATGGAGCGGATTTTAGCCACTGGCCTTATC
66 CGAAGATGGCAAATCTTATCTCCATGTATCG-GCAATGGAGCGGATTTTAGCCACTAGCCTTATC
* * *
33277239 TCTCTGAGGTAACAGGAAAGCAGGTTGAAAAATGAGTCTTATCTTCCTGAGGTAACAAGGAAGCA
130 TCTCTGAGGTAACAAGAAAGCAGGTTGAAAAAAGAGTCTTATCTACCTGAGGTAACAAGGAAGCA
*
33277304 GACTCAGGATTGAAGATTTCATCTCCTCGAAGTTACAGCGGAGCAGATCTTCGAAGGTGGCTAAT
195 GACTCAGGATTGAAGATTTCATCTCCTCGAAGTTACAGCGGAGCAGATCTTCGAAGATGGCTAAT
* *
33277369 CTTATCTCCATATATTGGCAATGGGACAGATCTGAGCCATCAGCCTTATCTCTTTGAGGTAGCAA
260 CTTATCTCCATATATTGGCAATGGGACAGATCTAAGCCATCAGCCTTATCTCTCTGAGGTAGCAA
* * * *
33277434 GAGAGCAGGTTGAAGAATGAGTCTTGTCTTTC
325 GAGAACAGGTTGAAGAATGAGTCTTATCCTTA
* * * * *
33277466 TAAGGTAGAAAGGAGGTAGACTAAAGATTGTAGATTT
1 TAAGGTAGCAAGAAAGTAGACTGAAGATTGAAGATTT
33277503 ATTTCCCAAA
Statistics
Matches: 361, Mismatches: 31, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
356 360 1.00
357 1 0.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (356 bp):
TAAGGTAGCAAGAAAGTAGACTGAAGATTGAAGATTTTATCTCCCTAAACAGTAGCAGAGCAGAT
CGAAGATGGCAAATCTTATCTCCATGTATCGGCAATGGAGCGGATTTTAGCCACTAGCCTTATCT
CTCTGAGGTAACAAGAAAGCAGGTTGAAAAAAGAGTCTTATCTACCTGAGGTAACAAGGAAGCAG
ACTCAGGATTGAAGATTTCATCTCCTCGAAGTTACAGCGGAGCAGATCTTCGAAGATGGCTAATC
TTATCTCCATATATTGGCAATGGGACAGATCTAAGCCATCAGCCTTATCTCTCTGAGGTAGCAAG
AGAACAGGTTGAAGAATGAGTCTTATCCTTA
Found at i:33277756 original size:16 final size:16
Alignment explanation
Indices: 33277735--33277766 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
33277725 AGAGAAAAAC
*
33277735 CAAAAATAAAAATAAA
1 CAAAAACAAAAATAAA
33277751 CAAAAACAAAAATAAA
1 CAAAAACAAAAATAAA
33277767 TTAAGATAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.81, C:0.09, G:0.00, T:0.09
Consensus pattern (16 bp):
CAAAAACAAAAATAAA
Found at i:33280184 original size:12 final size:12
Alignment explanation
Indices: 33280167--33280197 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
33280157 GTACATTGTC
33280167 AATTTGTAAATG
1 AATTTGTAAATG
33280179 AATTTGTAAATG
1 AATTTGTAAATG
33280191 AATTTGT
1 AATTTGT
33280198 GTTTAAACTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.39, C:0.00, G:0.16, T:0.45
Consensus pattern (12 bp):
AATTTGTAAATG
Found at i:33281565 original size:54 final size:55
Alignment explanation
Indices: 33281467--33281627 Score: 182
Period size: 59 Copynumber: 2.9 Consensus size: 55
33281457 GAGGGGAAGA
* ** *
33281467 AGCCAAAGTGAAAACCCACAAAGGGCGCTTTGAGACTTTCTAAAAAAAAG-GGGG
1 AGCCAAAGTGAAAACCCACAAAGGGCGCTTTGAGACCTAATAAAAAAAAGAAGGG
* * * *
33281521 GGCCAAAGTGAAAACTCGCAAAGGGCGCTTTGAGACCTAATAAAAATGACAAGATATGG
1 AGCCAAAGTGAAAACCCACAAAGGGCGCTTTGAGACCTAATAAAAA--A-AAGA-AGGG
*
33281580 AGCCAAAGTGAAAACCCACAAAGAGCGCTTTGAGA-CTCAATAAAAAAA
1 AGCCAAAGTGAAAACCCACAAAGGGCGCTTTGAGACCT-AATAAAAAAA
33281628 TAAAGTCAAA
Statistics
Matches: 89, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
54 40 0.45
56 2 0.02
57 4 0.04
58 2 0.02
59 41 0.46
ACGTcount: A:0.43, C:0.19, G:0.23, T:0.15
Consensus pattern (55 bp):
AGCCAAAGTGAAAACCCACAAAGGGCGCTTTGAGACCTAATAAAAAAAAGAAGGG
Found at i:33282903 original size:33 final size:33
Alignment explanation
Indices: 33282824--33282889 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
33282814 CTTCCTGAGG
33282824 TAGCAAAGAAGCAGACTGAAGATTAAAGATCTT
1 TAGCAAAGAAGCAGACTGAAGATTAAAGATCTT
33282857 TAGCAAAGAAGCAGACTGAAGATTAAAGATCTT
1 TAGCAAAGAAGCAGACTGAAGATTAAAGATCTT
33282890 ATCTCCCTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.45, C:0.12, G:0.21, T:0.21
Consensus pattern (33 bp):
TAGCAAAGAAGCAGACTGAAGATTAAAGATCTT
Found at i:33283037 original size:210 final size:210
Alignment explanation
Indices: 33282673--33283063 Score: 604
Period size: 210 Copynumber: 1.9 Consensus size: 210
33282663 TGGTGAAGTC
* * *
33282673 AGATCTTATCTCCCTAATCAGTGGCCGAGCAGATCGAAGATGCCGAATCTTATCTCCATATATAG
1 AGATCTTATCTCCCTAAGCAGTAGCCGAGCAGATCGAAGATGCCGAATCTTATATCCATATATAG
* * * * *
33282738 GCAATGGAGTAGATCTAAGCCACCAAGCCTTATCTCTCTGAGGTAGCAAGAGAGTAGGTTGAATA
66 ACAATGGAGCAGATCTAAGCCACCAAGCCTTATCTCTCTGAGGTAGCAAGAGAGAAGGTTAAAGA
*
33282803 TTGAGTCTTATCTTCCTGAGGTAGCAAAGAAGCAGACTGAAGATTAAAGATCTTTAGCAAAGAAG
131 TTGAGTCTTATCTTCCTAAGGTAGCAAAGAAGCAGACTGAAGATTAAAGATCTTTAGCAAAGAAG
33282868 CAGACTGAAGATTAA
196 CAGACTGAAGATTAA
** * * *
33282883 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAGA-GGCGAATCTTATATCCATGTATC
1 AGATCTTATCTCCCTAAGCAGTAGCCGAGCAGATCG-AAGATGCCGAATCTTATATCCATATATA
* *
33282947 GACAATGGAGCAGTTTTAAGCCACCAAGCCTTATCTCTCTGAGGTAGCAAGAGAGAAGGTTAAAG
65 GACAATGGAGCAGATCTAAGCCACCAAGCCTTATCTCTCTGAGGTAGCAAGAGAGAAGGTTAAAG
* *
33283012 ATTGAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATTGAAGAT
130 ATTGAGTCTTATCTTCCTAAGGTAGCAAAGAAGCAGACTGAAGATTAAAGAT
33283064 ATTATCTCCC
Statistics
Matches: 162, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
210 158 0.98
211 4 0.02
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (210 bp):
AGATCTTATCTCCCTAAGCAGTAGCCGAGCAGATCGAAGATGCCGAATCTTATATCCATATATAG
ACAATGGAGCAGATCTAAGCCACCAAGCCTTATCTCTCTGAGGTAGCAAGAGAGAAGGTTAAAGA
TTGAGTCTTATCTTCCTAAGGTAGCAAAGAAGCAGACTGAAGATTAAAGATCTTTAGCAAAGAAG
CAGACTGAAGATTAA
Found at i:33283190 original size:90 final size:87
Alignment explanation
Indices: 33282927--33283190 Score: 203
Period size: 90 Copynumber: 3.0 Consensus size: 87
33282917 CGAAAGAGGC
* * * *
33282927 GAATCTTATATCCATGTATCGACAATGGAGCAGTTTTAAGCCACCAAGCCTTATCTCTCTGAGGT
1 GAATCTTATTTCCATGTAT-GGCAATGGAGCAGATTTAAGCTACCAAGCCTTATCTCTCTGAGGT
* * *
33282992 AGCAAGAGAGAAGGTTAAAGATT
65 AGCAAAAGAGCAGGTTGAAGATT
* * * * * ** ** *
33283015 GAGTCTTATCTTCCTAAGGTA--GCAA-GGAAGCAGACTGAAGAT-TGAAGATATTATCTCCCTG
1 GAATCTTAT-TTCC--ATGTATGGCAATGG-AGCAGATTTAAGCTACCAAG-CCTTATCTCTCTG
* * *** * *
33283076 AAGTTGCAGCGGAGCAGATCGAAGATGGT
61 AGGTAGCAAAAGAGCAGGTTGAAGAT--T
33283105 GAATCTTATTTCCATGTATTGGCAATGGAGCAGATTTAAGCTACCAAGCCTTATCTCTCTGAGGT
1 GAATCTTATTTCCATGTA-TGGCAATGGAGCAGATTTAAGCTACCAAGCCTTATCTCTCTGAGGT
33283170 AGCAAAAGAGCAGGTTGAAGA
65 AGCAAAAGAGCAGGTTGAAGA
33283191 AATTGGTCTT
Statistics
Matches: 124, Mismatches: 40, Indels: 22
0.67 0.22 0.12
Matches are distributed among these distances:
87 9 0.07
88 47 0.38
89 7 0.06
90 52 0.42
91 9 0.07
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (87 bp):
GAATCTTATTTCCATGTATGGCAATGGAGCAGATTTAAGCTACCAAGCCTTATCTCTCTGAGGTA
GCAAAAGAGCAGGTTGAAGATT
Found at i:33283270 original size:178 final size:177
Alignment explanation
Indices: 33282857--33283333 Score: 579
Period size: 178 Copynumber: 2.7 Consensus size: 177
33282847 TAAAGATCTT
* * * *
33282857 TAGCAAAGAAGCAGACTGAAGATTAAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAA
1 TAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAACAGTTGTGGAGCAGATCG-AA
* *
33282922 GA-GGCGAATCTTATATCCATGTATCGACAATGGAGCAGTTTTAAGCCACCAAGCCTTATCTCTC
65 GATGGCGAATCTTATATCCATGTATCGGCAATGGAGCAGATTTAAGCCACCAAGCCTTATCTCTC
* *
33282986 TGAGGTAGCAAGAGAGAAGGTTAAAGATTGAGTCTTATCTTCCTAAGG
130 TGAGGTAGCAAAAGAGAAGGTTAAAAATTGAGTCTTATCTTCCTAAGG
* * *
33283034 TAGCAAGGAAGCAGACTGAAGATTGAAGATATTATCTCCCT-GA-AGTTGCAGCGGAGCAGATCG
1 TAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAACAGTT---GTGGAGCAGATCG
* * * *
33283097 AAGATGGTGAATCTTATTTCCATGTATTGGCAATGGAGCAGATTTAAGCTACCAAGCCTTATCTC
63 AAGATGGCGAATCTTATATCCATGTATCGGCAATGGAGCAGATTTAAGCCACCAAGCCTTATCTC
*
33283162 TCTGAGGTAGCAAAAGAGCAGGTTGAAGAAATTG-GTCTTATCTTCCTGAA-G
128 TCTGAGGTAGCAAAAGAGAAGGTT-AA-AAATTGAGTCTTATCTTCCT-AAGG
* * * * * *
33283213 TAGCAAGGAAGCAGACTGAAGATTGAGGATCTTGTCTCCTTAAACAGTTTTGGAGCAGGTCAAAG
1 TAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAACAGTTGTGGAGCAGATCGAAG
* * * * * * * *
33283278 ATAGCAAATTTTATCTCCACGTATCAGCAATGGAGCAAATTTAAGTCACC-AGCCTT
66 ATGGCGAATCTTATATCCATGTATCGGCAATGGAGCAGATTTAAGCCACCAAGCCTT
33283334 GTCTACCTGA
Statistics
Matches: 255, Mismatches: 36, Indels: 18
0.83 0.12 0.06
Matches are distributed among these distances:
175 3 0.01
177 48 0.19
178 139 0.55
179 53 0.21
180 8 0.03
181 4 0.02
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (177 bp):
TAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAACAGTTGTGGAGCAGATCGAAG
ATGGCGAATCTTATATCCATGTATCGGCAATGGAGCAGATTTAAGCCACCAAGCCTTATCTCTCT
GAGGTAGCAAAAGAGAAGGTTAAAAATTGAGTCTTATCTTCCTAAGG
Found at i:33286991 original size:24 final size:24
Alignment explanation
Indices: 33286961--33287018 Score: 98
Period size: 24 Copynumber: 2.4 Consensus size: 24
33286951 ACATATTTTT
33286961 ATACATTTGTACAATATCAATACC
1 ATACATTTGTACAATATCAATACC
*
33286985 ATACATTTGTACAATATGAATACC
1 ATACATTTGTACAATATCAATACC
*
33287009 ATACAATTGT
1 ATACATTTGT
33287019 CATGCTTTCA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.34
Consensus pattern (24 bp):
ATACATTTGTACAATATCAATACC
Found at i:33292787 original size:35 final size:35
Alignment explanation
Indices: 33292742--33292812 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
33292732 AAATACAATA
*
33292742 AAATCGATTATCTATGTTAAATTTTATAAATTAAT
1 AAATCGATTATCCATGTTAAATTTTATAAATTAAT
*
33292777 AAATTGATTATCCATGTTAAATTTTATAAATTAAT
1 AAATCGATTATCCATGTTAAATTTTATAAATTAAT
33292812 A
1 A
33292813 TCTATTTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.45
Consensus pattern (35 bp):
AAATCGATTATCCATGTTAAATTTTATAAATTAAT
Found at i:33299197 original size:57 final size:57
Alignment explanation
Indices: 33299122--33299238 Score: 207
Period size: 57 Copynumber: 2.1 Consensus size: 57
33299112 ATAATATCTT
33299122 ATAGAAAGAACTAGGAAATGAGTATGTTGAAGAGACCTACTGTTGAGTTTGATGATA
1 ATAGAAAGAACTAGGAAATGAGTATGTTGAAGAGACCTACTGTTGAGTTTGATGATA
* * *
33299179 ATAGATAGAAGTAGGAAATGAGTATGTTGAAGAGACCTACTGTTGAGTTTGGTGATA
1 ATAGAAAGAACTAGGAAATGAGTATGTTGAAGAGACCTACTGTTGAGTTTGATGATA
33299236 ATA
1 ATA
33299239 TATTCTTTAG
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 57 1.00
ACGTcount: A:0.38, C:0.06, G:0.27, T:0.29
Consensus pattern (57 bp):
ATAGAAAGAACTAGGAAATGAGTATGTTGAAGAGACCTACTGTTGAGTTTGATGATA
Found at i:33304947 original size:87 final size:87
Alignment explanation
Indices: 33304830--33304997 Score: 198
Period size: 87 Copynumber: 1.9 Consensus size: 87
33304820 TTAAGTTCTT
* * *
33304830 TTTTTTTACACTTATTTGGATACTTAAACTTTCAAAAT-ATAATAAAAAAGCCCTCAAA-TATTT
1 TTTTTTTACACTCAATTAGATACTTAAACTTTCAAAATCATAA-AAAAAA-CCCTCAAACT-TTT
*
33304893 TT-AAAAAAAGTAATTAAACCCCTA
63 TTAAAAAAAAGCAATTAAACCCCTA
* * * * *
33304917 TTTTTTTACGCTCAATTAGATACTTGAACTTTTAAAATGCATCAAAAACACCCTCAAACTTTTTT
1 TTTTTTTACACTCAATTAGATACTTAAACTTTCAAAAT-CATAAAAAAAACCCTCAAACTTTTTT
33304982 AAAAAAAAGCAATTAA
65 AAAAAAAAGCAATTAA
33304998 GCCCATAATT
Statistics
Matches: 68, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
87 45 0.66
88 20 0.29
89 3 0.04
ACGTcount: A:0.43, C:0.16, G:0.05, T:0.36
Consensus pattern (87 bp):
TTTTTTTACACTCAATTAGATACTTAAACTTTCAAAATCATAAAAAAAACCCTCAAACTTTTTTA
AAAAAAAGCAATTAAACCCCTA
Found at i:33305091 original size:29 final size:27
Alignment explanation
Indices: 33305024--33305113 Score: 80
Period size: 26 Copynumber: 3.3 Consensus size: 27
33305014 AAAATTAGAA
*
33305024 AAAAATTATAAAAAATTAAA-A-TTAAT
1 AAAAATTAT-AAATATTAAATATTTAAT
*
33305050 AAAAACTATAAATTTTATTAAAT-TTTAAT
1 AAAAATTATAAA---TATTAAATATTTAAT
*
33305079 AAAAATTCA-AAATATTAAATATTTATT
1 AAAAATT-ATAAATATTAAATATTTAAT
33305106 AAAAATTA
1 AAAAATTA
33305114 GAAAAAATAT
Statistics
Matches: 53, Mismatches: 4, Indels: 14
0.75 0.06 0.20
Matches are distributed among these distances:
25 3 0.06
26 17 0.32
27 12 0.23
28 6 0.11
29 14 0.26
30 1 0.02
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (27 bp):
AAAAATTATAAATATTAAATATTTAAT
Found at i:33305172 original size:28 final size:28
Alignment explanation
Indices: 33305141--33305195 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
33305131 TGTAATTTTT
33305141 TATAAAAATCAT-AAAAAGTTATAAAATA
1 TATAAAAA-CATAAAAAAGTTATAAAATA
* *
33305169 TATAGAAACATAAAAAATTTATAAAAT
1 TATAAAAACATAAAAAAGTTATAAAAT
33305196 TTTATAAAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.12
28 21 0.88
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.29
Consensus pattern (28 bp):
TATAAAAACATAAAAAAGTTATAAAATA
Found at i:33307984 original size:17 final size:18
Alignment explanation
Indices: 33307951--33307984 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
33307941 AGAATATGAG
*
33307951 TTGAGCTGAATTTGATAA
1 TTGAGCTGAAATTGATAA
33307969 TTGAGCT-AAATTGATA
1 TTGAGCTGAAATTGATA
33307985 TGAATTCAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.35, C:0.06, G:0.21, T:0.38
Consensus pattern (18 bp):
TTGAGCTGAAATTGATAA
Found at i:33310489 original size:20 final size:20
Alignment explanation
Indices: 33310466--33310505 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
33310456 TAAAGTGTAT
*
33310466 ACAGAGGCACCAAAGTGCAA
1 ACAGAGCCACCAAAGTGCAA
*
33310486 ACAGAGCCACCGAAGTGCAA
1 ACAGAGCCACCAAAGTGCAA
33310506 TTCCCGTACA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.42, C:0.28, G:0.25, T:0.05
Consensus pattern (20 bp):
ACAGAGCCACCAAAGTGCAA
Found at i:33314059 original size:12 final size:12
Alignment explanation
Indices: 33314042--33314068 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
33314032 TATGAGTGGG
33314042 ATGGCATATATT
1 ATGGCATATATT
33314054 ATGGCATATATT
1 ATGGCATATATT
33314066 ATG
1 ATG
33314069 TATATGTGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.07, G:0.19, T:0.41
Consensus pattern (12 bp):
ATGGCATATATT
Found at i:33315487 original size:23 final size:23
Alignment explanation
Indices: 33315461--33315504 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
33315451 CTAGCTATCA
33315461 TAGCATTTTTCATCAATGGTCCG
1 TAGCATTTTTCATCAATGGTCCG
*
33315484 TAGCATTTTTCATCTATGGTC
1 TAGCATTTTTCATCAATGGTC
33315505 TTACATCGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.20, C:0.20, G:0.16, T:0.43
Consensus pattern (23 bp):
TAGCATTTTTCATCAATGGTCCG
Found at i:33328796 original size:46 final size:45
Alignment explanation
Indices: 33328652--33328867 Score: 163
Period size: 46 Copynumber: 4.7 Consensus size: 45
33328642 CATATCTGTG
* * *
33328652 CCGATGCCATGTCCCAGGCATGGTCTTACACT-GACACATCTC-GTA
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGACTCATCTCAATA
* * * ** **
33328697 GCCGATGCATGTCCCAAACACGTCTTACACTGG-CTTACGTCTTGAGG
1 -CCGATGCATGTCCCAGACATGTCTTACACTGGAC-T-CATCTCAATA
33328744 CCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCAATA
1 CCGATGCATGTCCCAGACATGTCTTACACTGG-ACTCATCTCAATA
* * * *
33328790 CGGATGCCATGTCCCAGACATGGTCTTACATTGGA-TC-TCACAATGTGG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGACTCATCTCAA--T-A
*
33328838 CCGATTCATGTCCCAGACATGTCTTACACT
1 CCGATGCATGTCCCAGACATGTCTTACACT
33328868 AGCTCACATA
Statistics
Matches: 136, Mismatches: 23, Indels: 22
0.75 0.13 0.12
Matches are distributed among these distances:
44 11 0.08
45 17 0.12
46 61 0.45
47 31 0.23
48 16 0.12
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (45 bp):
CCGATGCATGTCCCAGACATGTCTTACACTGGACTCATCTCAATA
Found at i:33331992 original size:185 final size:185
Alignment explanation
Indices: 33331666--33332040 Score: 678
Period size: 185 Copynumber: 2.0 Consensus size: 185
33331656 AAACCCTGAT
*
33331666 CTCACATTCTGTCTGGCTTGGTCTCTCCTCTGAGTCCTCGAACAATCTCTCAAATCTTGCGAACA
1 CTCACATTCTGTCTGGCTTGGTCTCTCCTCTGAGTCCTCGAACAATCTCTCAAATCTTGCAAACA
* *
33331731 TCAGACAAACTGCTATAAATTCAAATGAGCTTAATGAGTTTCTCCACTAGGTCATACATAAAAAA
66 TCAGACAAACTGCTATAAATTCAAATGAACTTAATGAGTTTCTCCACTAGGTCACACATAAAAAA
33331796 ACCCAAACTCACGAGGGTAAGAAATGTAAAATAAAATAAATATAAATATTCCTTG
131 ACCCAAACTCACGAGGGTAAGAAATGTAAAATAAAATAAATATAAATATTCCTTG
33331851 CTCACATTCTGTCTGGCTTGGTCTCTCCTCTGAGTCCTCGAACAATCTCTCAAATCTTGCAAACA
1 CTCACATTCTGTCTGGCTTGGTCTCTCCTCTGAGTCCTCGAACAATCTCTCAAATCTTGCAAACA
* * *
33331916 TCAGACAAACTGCTATAAGTTCAAATGAACTTAATGAGTTTCTCCATTAGGTCACACATAAATAA
66 TCAGACAAACTGCTATAAATTCAAATGAACTTAATGAGTTTCTCCACTAGGTCACACATAAAAAA
* *
33331981 ACCCGAACTCACGAGGGTAAGAAATGTAAAATAAAATAAATATAAATATTGCTTG
131 ACCCAAACTCACGAGGGTAAGAAATGTAAAATAAAATAAATATAAATATTCCTTG
33332036 CTCAC
1 CTCAC
33332041 TTAAGGTGAG
Statistics
Matches: 182, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
185 182 1.00
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.28
Consensus pattern (185 bp):
CTCACATTCTGTCTGGCTTGGTCTCTCCTCTGAGTCCTCGAACAATCTCTCAAATCTTGCAAACA
TCAGACAAACTGCTATAAATTCAAATGAACTTAATGAGTTTCTCCACTAGGTCACACATAAAAAA
ACCCAAACTCACGAGGGTAAGAAATGTAAAATAAAATAAATATAAATATTCCTTG
Found at i:33340902 original size:39 final size:39
Alignment explanation
Indices: 33340876--33341033 Score: 280
Period size: 39 Copynumber: 4.1 Consensus size: 39
33340866 GTCCAGCACG
* *
33340876 TAGCCTACGGACCTAAAGTCCGGATATAATTCTCGCATA
1 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCATA
*
33340915 TAGCCTGCGGACATGAAGTCCGGATATAATTCTCGCATA
1 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCATA
*
33340954 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCTTA
1 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCATA
33340993 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCATA
1 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCATA
33341032 TA
1 TA
33341034 TATATTCACA
Statistics
Matches: 113, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 113 1.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.27
Consensus pattern (39 bp):
TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCATA
Found at i:33342517 original size:37 final size:37
Alignment explanation
Indices: 33342467--33342545 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
33342457 TTATTACGAA
* * * *
33342467 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCAG
*
33342504 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCAG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCAG
33342541 GTCTT
1 GTCTT
33342546 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCAG
Found at i:33342790 original size:47 final size:47
Alignment explanation
Indices: 33342664--33343138 Score: 732
Period size: 47 Copynumber: 10.1 Consensus size: 47
33342654 CCCTTCGGGA
* * * * * *
33342664 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
33342711 CCTGTCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33342760 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33342806 -------CATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
33342846 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33342893 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
33342940 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33342989 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33343036 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33343085 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33343132 CTTATCA
1 CTTATCA
33343139 TCATTTCATA
Statistics
Matches: 398, Mismatches: 16, Indels: 28
0.90 0.04 0.06
Matches are distributed among these distances:
39 39 0.10
47 229 0.58
49 130 0.33
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:33342974 original size:143 final size:142
Alignment explanation
Indices: 33342666--33343138 Score: 723
Period size: 143 Copynumber: 3.4 Consensus size: 142
33342656 CTTCGGGACT
* * * * * * * *
33342666 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATATACAC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACAC
* *
33342731 TTCCACATTCATCACATCGGCCATTAGGTCTTATCAC-ATATATACACTTTCACATTCATCACAT
64 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACAT
33342795 CGGCCATTAGG---
129 CGGCCATTAGGCCC
*
33342806 -----CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACACTT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
33342866 TCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATACACTTTCACATTCATCACATCG
66 TCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATCG
33342930 GCCATTAGGCCC
131 GCCATTAGGCCC
33342942 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
33343007 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
64 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCATCACA
*
33343072 TCGGCCATTAGGCCT
128 TCGGCCATTAGGCCC
33343087 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
33343139 TCATTTCATA
Statistics
Matches: 310, Mismatches: 11, Indels: 21
0.91 0.03 0.06
Matches are distributed among these distances:
133 83 0.27
135 41 0.13
141 1 0.00
143 139 0.45
145 46 0.15
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (142 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
TCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATCG
GCCATTAGGCCC
Found at i:33342981 original size:96 final size:96
Alignment explanation
Indices: 33342806--33343138 Score: 634
Period size: 96 Copynumber: 3.5 Consensus size: 96
33342796 GGCCATTAGG
33342806 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCAC--ATATATACACTTTCA
1 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCA
33342869 CATTCATCACATCGGCCATTAGGCCTTATCA
66 CATTCATCACATCGGCCATTAGGCCTTATCA
33342900 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCA
1 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCA
33342965 CATTCATCACATCGGCCATTAGGCCTTATCA
66 CATTCATCACATCGGCCATTAGGCCTTATCA
*
33342996 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCA
1 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCA
33343061 CATTCATCACATCGGCCATTAGGCCTTATCA
66 CATTCATCACATCGGCCATTAGGCCTTATCA
*
33343092 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
1 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCA
33343139 TCATTTCATA
Statistics
Matches: 236, Mismatches: 1, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
94 48 0.20
96 188 0.80
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (96 bp):
CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCA
CATTCATCACATCGGCCATTAGGCCTTATCA
Found at i:33346473 original size:40 final size:40
Alignment explanation
Indices: 33346428--33346624 Score: 268
Period size: 40 Copynumber: 4.9 Consensus size: 40
33346418 CGAATACACG
* * * * *
33346428 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
* * * *** * *
33346468 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
*
33346508 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
33346548 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
33346588 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGAT
1 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGAT
33346625 TTAGTAACTC
Statistics
Matches: 142, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
Found at i:33347092 original size:29 final size:29
Alignment explanation
Indices: 33347050--33347128 Score: 88
Period size: 29 Copynumber: 2.7 Consensus size: 29
33347040 CTTAATAATC
* *
33347050 AACCACGCATACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
* *
33347080 AACTCGCACACTTAGTGCTATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
33347109 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
33347129 ATCTCACAAC
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
28 3 0.07
29 35 0.85
30 3 0.07
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.27
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:33347171 original size:43 final size:43
Alignment explanation
Indices: 33347110--33347212 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
33347100 TGCATTTCAA
33347110 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
33347153 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
33347196 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
33347213 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:33349118 original size:37 final size:37
Alignment explanation
Indices: 33349068--33349146 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
33349058 TTATTACGAA
* * * *
33349068 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCAG
*
33349105 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCAG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCAG
33349142 GTCTT
1 GTCTT
33349147 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCAG
Found at i:33349391 original size:47 final size:47
Alignment explanation
Indices: 33349265--33349739 Score: 732
Period size: 47 Copynumber: 10.1 Consensus size: 47
33349255 CCCTTCGAGA
* * * * * *
33349265 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
33349312 CCTGTCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33349361 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33349407 -------CATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
33349447 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33349494 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
33349541 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33349590 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33349637 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33349686 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33349733 CTTATCA
1 CTTATCA
33349740 TCATTTCATA
Statistics
Matches: 398, Mismatches: 16, Indels: 28
0.90 0.04 0.06
Matches are distributed among these distances:
39 39 0.10
47 229 0.58
49 130 0.33
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:33349575 original size:143 final size:142
Alignment explanation
Indices: 33349267--33349739 Score: 723
Period size: 143 Copynumber: 3.4 Consensus size: 142
33349257 CTTCGAGACT
* * * * * * * *
33349267 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATATACAC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACAC
* *
33349332 TTCCACATTCATCACATCGGCCATTAGGTCTTATCAC-ATATATACACTTTCACATTCATCACAT
64 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACAT
33349396 CGGCCATTAGG---
129 CGGCCATTAGGCCC
*
33349407 -----CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACACTT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
33349467 TCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATACACTTTCACATTCATCACATCG
66 TCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATCG
33349531 GCCATTAGGCCC
131 GCCATTAGGCCC
33349543 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
33349608 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
64 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCATCACA
*
33349673 TCGGCCATTAGGCCT
128 TCGGCCATTAGGCCC
33349688 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
33349740 TCATTTCATA
Statistics
Matches: 310, Mismatches: 11, Indels: 21
0.91 0.03 0.06
Matches are distributed among these distances:
133 83 0.27
135 41 0.13
141 1 0.00
143 139 0.45
145 46 0.15
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (142 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
TCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATCG
GCCATTAGGCCC
Found at i:33349582 original size:96 final size:96
Alignment explanation
Indices: 33349407--33349739 Score: 634
Period size: 96 Copynumber: 3.5 Consensus size: 96
33349397 GGCCATTAGG
33349407 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCAC--ATATATACACTTTCA
1 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCA
33349470 CATTCATCACATCGGCCATTAGGCCTTATCA
66 CATTCATCACATCGGCCATTAGGCCTTATCA
33349501 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCA
1 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCA
33349566 CATTCATCACATCGGCCATTAGGCCTTATCA
66 CATTCATCACATCGGCCATTAGGCCTTATCA
*
33349597 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCA
1 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCA
33349662 CATTCATCACATCGGCCATTAGGCCTTATCA
66 CATTCATCACATCGGCCATTAGGCCTTATCA
*
33349693 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
1 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCA
33349740 TCATTTCATA
Statistics
Matches: 236, Mismatches: 1, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
94 48 0.20
96 188 0.80
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (96 bp):
CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCA
CATTCATCACATCGGCCATTAGGCCTTATCA
Found at i:33360119 original size:29 final size:29
Alignment explanation
Indices: 33360067--33360126 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
33360057 CACAAAAACT
*
33360067 TTCCTTATAATAGAGATCACCACAGAGGC
1 TTCCTTATAATAGAGATCACCACAAAGGC
**
33360096 TTCCTTATAATAGAGATCGTCACAAAGGC
1 TTCCTTATAATAGAGATCACCACAAAGGC
33360125 TT
1 TT
33360127 TCGTAAGGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (29 bp):
TTCCTTATAATAGAGATCACCACAAAGGC
Found at i:33361788 original size:7 final size:7
Alignment explanation
Indices: 33361776--33361817 Score: 57
Period size: 7 Copynumber: 6.0 Consensus size: 7
33361766 TTTAAAAAAC
33361776 AATTGAG
1 AATTGAG
33361783 AATTGAG
1 AATTGAG
33361790 AATTGAG
1 AATTGAG
*
33361797 AACTGAG
1 AATTGAG
*
33361804 AACTGAG
1 AATTGAG
*
33361811 GATTGAG
1 AATTGAG
33361818 TTGAAAAGAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.40, C:0.05, G:0.31, T:0.24
Consensus pattern (7 bp):
AATTGAG
Found at i:33362776 original size:9 final size:9
Alignment explanation
Indices: 33362764--33362794 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
33362754 CTTTCCTAAC
*
33362764 TTTTAAGAA
1 TTTTATGAA
33362773 TTTTATGAA
1 TTTTATGAA
33362782 TTTTATGAA
1 TTTTATGAA
33362791 TTTT
1 TTTT
33362795 TTTAGCTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.32, C:0.00, G:0.10, T:0.58
Consensus pattern (9 bp):
TTTTATGAA
Found at i:33363610 original size:49 final size:50
Alignment explanation
Indices: 33363520--33363626 Score: 171
Period size: 49 Copynumber: 2.1 Consensus size: 50
33363510 AACATATTTT
* *
33363520 TAATTAATATGTAAGTTATTTTTTTTTTGCTATTACAATTACGATCACATTG
1 TAATTAATATGTAAG-T-TTTTTTTTTTGCTATTACAATTACAATCACATTC
33363572 TAATTAATATGTAAG-TTTTTTTTTTGCTATTACAATTACAATCACATTC
1 TAATTAATATGTAAGTTTTTTTTTTTGCTATTACAATTACAATCACATTC
33363621 TAATTA
1 TAATTA
33363627 CAAAAAGTAT
Statistics
Matches: 53, Mismatches: 2, Indels: 3
0.91 0.03 0.05
Matches are distributed among these distances:
49 38 0.72
52 15 0.28
ACGTcount: A:0.33, C:0.10, G:0.07, T:0.50
Consensus pattern (50 bp):
TAATTAATATGTAAGTTTTTTTTTTTGCTATTACAATTACAATCACATTC
Found at i:33371095 original size:765 final size:763
Alignment explanation
Indices: 33369578--33371495 Score: 3651
Period size: 765 Copynumber: 2.5 Consensus size: 763
33369568 TACCTTCGAT
33369578 TGAAAGATGAGGAAAAGTTCGTACACTTGGTTATCCCTTGCAACTCCCCCACTCTTCGAAAGACT
1 TGAAAGATGAGGAAAAGTTCGTACACTTGGTTATCCCTTGCAACTCCCCCACTCTTCGAAAGACT
*
33369643 AGGAACCCACGAACACCACACCAAACAAACGAGATGAGATTCGGCAATAGTAACAAAAGAGACCG
66 AGGAACCCACGAACACCACACCAAACAAAAGAGATGAGATTCGGCAATAGTAACAAAAGAGACCG
*
33369708 AGAGAAAAGAAAGACTTAATCAAAGTTGAAAGAAAAAAAAGAGACCGAGCGTTTACCGATTTGTA
131 AGAGAAAAGAAAGACTTAATCAAAGTTGAAAGAAAAAAAAGAGACCGAGCGTTTACCGATTTGCA
33369773 GAGAACGCTTGCACAACCGTGATTAACCAGAGGAGTTTTGAACTTGACCAATAAGTCAAGATAAG
196 GAGAACGCTTGCACAACCGTGATTAACCAGAGGAGTTTTGAACTTGACCAATAAGTCAAGATAAG
33369838 AAGAGAAGAAAGGAAGGATGCAATCGATTAGGGAGATATTCAGACGAGCCAAGGGAAAAAGAAGA
261 AAGAGAAGAAAGGAAGGATGCAATCGATTAGGGAGATATTCAGACGAGCCAAGGGAAAAAGAAGA
*
33369903 AATTCGGTTAAGGAAAAAGCTAAAAGTCGAAAGAGTCAATGAGTAGAGGGAGAAGTGTATTCAGA
326 AATTCGGTTAAGGCAAAAGCTAAAAGTCGAAAGAGTCAATGAGTAGAGGGAGAAGTGTATTCAGA
33369968 AACTAGAAGTTCTAAGGAAAACGACAATAAAGGGAGTACAGAGAAAAGAACAAAATCGATATAGC
391 AACTAGAAGTTCTAAGGAAAACGACAATAAAGGGAGTACAGAGAAAAGAACAAAATCGATATAGC
*
33370033 CCTAACAAGAAAATGCCTGAAAGAAAGGAAAATTGAAAAAGAAATAGTGAAGAAAGCTGACATAT
456 CCTAACAAGAAAATGCCTGAAAGAAAGGAAAATCG-AAAAGAAATAGTGAAGAAAGCTGACATAT
33370098 TCGGCCAAATGAGTACAGATGCTAGGGGAAAAGAAACAAAAGAGGTTGGTAATCAAAAGATGTTT
520 TCGGCCAAATGAGTACAGATGCTAGGGGAAAAGAAACAAAAGAGGTTGGTAATCAAAAGATGTTT
33370163 AAGAGACCAAAATGCGAAGACCCAAAATGACCCAAAATGACCAAAAACAAACACCAAAAATGGAG
585 AAGAGACCAAAATGCGAAGACCCAAAATGACCCAAAATGACCAAAAACAAACACCAAAAATGGAG
33370228 AGGTTGAAATTCACTCAGAAAGAGCACAAAAGAAATGACTACAATCTCTACTTTTTTCTAAAAAA
650 AGGTTGAAATTCACTCAGAAAGAGCACAAAAGAAATGACTACAATCTCTACTTTTTTCTAAAAAA
33370293 ACCATGCCAAATGTGAGAGTCCACAATCGACACACACACTATCACTCTCC
715 ACCATGCCAAATGTGAGAGTCCACAATCGA-ACACACACTATCACTCTCC
33370343 TGAAAGATGAGGAAAAGTTCGTACACTTGGTTATCCCTTGCAACTCCCCCACTCTTCGAAAGACT
1 TGAAAGATGAGGAAAAGTTCGTACACTTGGTTATCCCTTGCAACTCCCCCACTCTTCGAAAGACT
*
33370408 AGGAACCCACGAACACCACACCAAACAAAAGAGATGAGATTCGGCAATAGTAATAAAAGAGACCG
66 AGGAACCCACGAACACCACACCAAACAAAAGAGATGAGATTCGGCAATAGTAACAAAAGAGACCG
33370473 AGAGAAAAGAAAGACTTAATCAAAGTTGAAAGAAAAAAAAGAGACCGAGCGTTTACCGATTTGCA
131 AGAGAAAAGAAAGACTTAATCAAAGTTGAAAGAAAAAAAAGAGACCGAGCGTTTACCGATTTGCA
33370538 GAGAACGCTTGCACAACCGTGATTAACCAGAGGAGTTTTGAACTTGACCAATAAGTCAAGATAAG
196 GAGAACGCTTGCACAACCGTGATTAACCAGAGGAGTTTTGAACTTGACCAATAAGTCAAGATAAG
33370603 AAGAGAAGAAAGGAAGGATGCAATCGATTAGGGAGATATTCAGACGAGCCAAGGGAAAAAGAAGA
261 AAGAGAAGAAAGGAAGGATGCAATCGATTAGGGAGATATTCAGACGAGCCAAGGGAAAAAGAAGA
33370668 AATTCGGTTAAGGCAAAAGCTAAAAGTCGAAAGAGTCAATGAGTAGAGGGAGAAGTGTATTCAGA
326 AATTCGGTTAAGGCAAAAGCTAAAAGTCGAAAGAGTCAATGAGTAGAGGGAGAAGTGTATTCAGA
33370733 AACTAGAAGTTCTAAGGAAAACGACAATAAAGGGAGTACAGAG-AAAGAACAAAATCGATATAGC
391 AACTAGAAGTTCTAAGGAAAACGACAATAAAGGGAGTACAGAGAAAAGAACAAAATCGATATAGC
33370797 CCTAACAAGAAAATGCCTGAAAGAAAGGAAAATCG-AAAGAAATAGTGAAGAAAGCTGACATATT
456 CCTAACAAGAAAATGCCTGAAAGAAAGGAAAATCGAAAAGAAATAGTGAAGAAAGCTGACATATT
33370861 CGGCCAAATGAGTACAGATGCTAGGGGAAAAGAAACAAAAGAGGTTGGTAATCAAAAGATGTTTA
521 CGGCCAAATGAGTACAGATGCTAGGGGAAAAGAAACAAAAGAGGTTGGTAATCAAAAGATGTTTA
*
33370926 AGAGACCAAAATGCGAAGACCCAAAATGACCCAAAATGACCAAAAACTAACACCAAAAATGGAGA
586 AGAGACCAAAATGCGAAGACCCAAAATGACCCAAAATGACCAAAAACAAACACCAAAAATGGAGA
*
33370991 GGTTGAAATTCACTCAGAAAGAGCACAAAGGAAATGACTACAATCTCTACTTTTTTCTAAAAAAA
651 GGTTGAAATTCACTCAGAAAGAGCACAAAAGAAATGACTACAATCTCTACTTTTTTCT-AAAAAA
* *
33371056 ACCAAAAATTCCAAATGTGAGAGTCCATAATCGACACACACACTATCACTCTCC
715 ACC----ATGCCAAATGTGAGAGTCCACAATCGA-ACACACACTATCACTCTCC
*
33371110 TAAAAGATGAGGAAAAGTTCGTACACTTGGTTATCCCTTGCAACTCCCCCACTCTTCGAAAGACT
1 TGAAAGATGAGGAAAAGTTCGTACACTTGGTTATCCCTTGCAACTCCCCCACTCTTCGAAAGACT
33371175 AGGAACCCACGAACACCACACCAAACAAAAGAGATGAGATTCGGCAATAGTAACAAAAGAGACCG
66 AGGAACCCACGAACACCACACCAAACAAAAGAGATGAGATTCGGCAATAGTAACAAAAGAGACCG
33371240 AGAGAAAAGAAAGACTTAATCAAAGTTGAAAGAAAAAAAAGAGACCGAGCGTTTACCGATTTGCA
131 AGAGAAAAGAAAGACTTAATCAAAGTTGAAAGAAAAAAAAGAGACCGAGCGTTTACCGATTTGCA
33371305 GAGAACGCTTGCACAACCGTGATTAACCAGAGGAGTTTTGAACTTGACCAATAAGTCAAGATAAG
196 GAGAACGCTTGCACAACCGTGATTAACCAGAGGAGTTTTGAACTTGACCAATAAGTCAAGATAAG
33371370 AAGAGAAGAAAGGAAGGATGCAATCGATTAGGGAGATATTCAGACGAGCCAAGGGAAAAAGAAGA
261 AAGAGAAGAAAGGAAGGATGCAATCGATTAGGGAGATATTCAGACGAGCCAAGGGAAAAAGAAGA
*
33371435 AATTCGGTTACGGCAAAAGCTAAAAGTCGAAAGAGTCAATGAGTAGAGGGAGAAGTGTATT
326 AATTCGGTTAAGGCAAAAGCTAAAAGTCGAAAGAGTCAATGAGTAGAGGGAGAAGTGTATT
33371496 ACTCCCCCTA
Statistics
Matches: 1136, Mismatches: 12, Indels: 8
0.98 0.01 0.01
Matches are distributed among these distances:
762 215 0.19
763 9 0.01
764 55 0.05
765 429 0.38
767 428 0.38
ACGTcount: A:0.44, C:0.17, G:0.22, T:0.17
Consensus pattern (763 bp):
TGAAAGATGAGGAAAAGTTCGTACACTTGGTTATCCCTTGCAACTCCCCCACTCTTCGAAAGACT
AGGAACCCACGAACACCACACCAAACAAAAGAGATGAGATTCGGCAATAGTAACAAAAGAGACCG
AGAGAAAAGAAAGACTTAATCAAAGTTGAAAGAAAAAAAAGAGACCGAGCGTTTACCGATTTGCA
GAGAACGCTTGCACAACCGTGATTAACCAGAGGAGTTTTGAACTTGACCAATAAGTCAAGATAAG
AAGAGAAGAAAGGAAGGATGCAATCGATTAGGGAGATATTCAGACGAGCCAAGGGAAAAAGAAGA
AATTCGGTTAAGGCAAAAGCTAAAAGTCGAAAGAGTCAATGAGTAGAGGGAGAAGTGTATTCAGA
AACTAGAAGTTCTAAGGAAAACGACAATAAAGGGAGTACAGAGAAAAGAACAAAATCGATATAGC
CCTAACAAGAAAATGCCTGAAAGAAAGGAAAATCGAAAAGAAATAGTGAAGAAAGCTGACATATT
CGGCCAAATGAGTACAGATGCTAGGGGAAAAGAAACAAAAGAGGTTGGTAATCAAAAGATGTTTA
AGAGACCAAAATGCGAAGACCCAAAATGACCCAAAATGACCAAAAACAAACACCAAAAATGGAGA
GGTTGAAATTCACTCAGAAAGAGCACAAAAGAAATGACTACAATCTCTACTTTTTTCTAAAAAAA
CCATGCCAAATGTGAGAGTCCACAATCGAACACACACTATCACTCTCC
Found at i:33371317 original size:767 final size:764
Alignment explanation
Indices: 33369580--33371495 Score: 3665
Period size: 767 Copynumber: 2.5 Consensus size: 764
33369570 CCTTCGATTG
33369580 AAAGATGAGGAAAAGTTCGTACACTTGGTTATCCCTTGCAACTCCCCCACTCTTCGAAAGACTAG
1 AAAGATGAGGAAAAGTTCGTACACTTGGTTATCCCTTGCAACTCCCCCACTCTTCGAAAGACTAG
*
33369645 GAACCCACGAACACCACACCAAACAAACGAGATGAGATTCGGCAATAGTAACAAAAGAGACCGAG
66 GAACCCACGAACACCACACCAAACAAAAGAGATGAGATTCGGCAATAGTAACAAAAGAGACCGAG
*
33369710 AGAAAAGAAAGACTTAATCAAAGTTGAAAGAAAAAAAAGAGACCGAGCGTTTACCGATTTGTAGA
131 AGAAAAGAAAGACTTAATCAAAGTTGAAAGAAAAAAAAGAGACCGAGCGTTTACCGATTTGCAGA
33369775 GAACGCTTGCACAACCGTGATTAACCAGAGGAGTTTTGAACTTGACCAATAAGTCAAGATAAGAA
196 GAACGCTTGCACAACCGTGATTAACCAGAGGAGTTTTGAACTTGACCAATAAGTCAAGATAAGAA
33369840 GAGAAGAAAGGAAGGATGCAATCGATTAGGGAGATATTCAGACGAGCCAAGGGAAAAAGAAGAAA
261 GAGAAGAAAGGAAGGATGCAATCGATTAGGGAGATATTCAGACGAGCCAAGGGAAAAAGAAGAAA
*
33369905 TTCGGTTAAGGAAAAAGCTAAAAGTCGAAAGAGTCAATGAGTAGAGGGAGAAGTGTATTCAGAAA
326 TTCGGTTAAGGCAAAAGCTAAAAGTCGAAAGAGTCAATGAGTAGAGGGAGAAGTGTATTCAGAAA
33369970 CTAGAAGTTCTAAGGAAAACGACAATAAAGGGAGTACAGAGAAAAGAACAAAATCGATATAGCCC
391 CTAGAAGTTCTAAGGAAAACGACAATAAAGGGAGTACAGAGAAAAGAACAAAATCGATATAGCCC
*
33370035 TAACAAGAAAATGCCTGAAAGAAAGGAAAATTGAAAAAGAAATAGTGAAGAAAGCTGACATATTC
456 TAACAAGAAAATGCCTGAAAGAAAGGAAAATCG-AAAAGAAATAGTGAAGAAAGCTGACATATTC
33370100 GGCCAAATGAGTACAGATGCTAGGGGAAAAGAAACAAAAGAGGTTGGTAATCAAAAGATGTTTAA
520 GGCCAAATGAGTACAGATGCTAGGGGAAAAGAAACAAAAGAGGTTGGTAATCAAAAGATGTTTAA
33370165 GAGACCAAAATGCGAAGACCCAAAATGACCCAAAATGACCAAAAACAAACACCAAAAATGGAGAG
585 GAGACCAAAATGCGAAGACCCAAAATGACCCAAAATGACCAAAAACAAACACCAAAAATGGAGAG
33370230 GTTGAAATTCACTCAGAAAGAGCACAAAAGAAATGACTACAATCTCTACTTTTTTCTAAAAAAAC
650 GTTGAAATTCACTCAGAAAGAGCACAAAAGAAATGACTACAATCTCTACTTTTTTCTAAAAAAAC
*
33370295 CATGCCAAATGTGAGAGTCCACAATCGACACACACACTATCACTCTCCTG
715 CATGCCAAATGTGAGAGTCCACAATCGACACACACACTATCACTCTCCTA
33370345 AAAGATGAGGAAAAGTTCGTACACTTGGTTATCCCTTGCAACTCCCCCACTCTTCGAAAGACTAG
1 AAAGATGAGGAAAAGTTCGTACACTTGGTTATCCCTTGCAACTCCCCCACTCTTCGAAAGACTAG
*
33370410 GAACCCACGAACACCACACCAAACAAAAGAGATGAGATTCGGCAATAGTAATAAAAGAGACCGAG
66 GAACCCACGAACACCACACCAAACAAAAGAGATGAGATTCGGCAATAGTAACAAAAGAGACCGAG
33370475 AGAAAAGAAAGACTTAATCAAAGTTGAAAGAAAAAAAAGAGACCGAGCGTTTACCGATTTGCAGA
131 AGAAAAGAAAGACTTAATCAAAGTTGAAAGAAAAAAAAGAGACCGAGCGTTTACCGATTTGCAGA
33370540 GAACGCTTGCACAACCGTGATTAACCAGAGGAGTTTTGAACTTGACCAATAAGTCAAGATAAGAA
196 GAACGCTTGCACAACCGTGATTAACCAGAGGAGTTTTGAACTTGACCAATAAGTCAAGATAAGAA
33370605 GAGAAGAAAGGAAGGATGCAATCGATTAGGGAGATATTCAGACGAGCCAAGGGAAAAAGAAGAAA
261 GAGAAGAAAGGAAGGATGCAATCGATTAGGGAGATATTCAGACGAGCCAAGGGAAAAAGAAGAAA
33370670 TTCGGTTAAGGCAAAAGCTAAAAGTCGAAAGAGTCAATGAGTAGAGGGAGAAGTGTATTCAGAAA
326 TTCGGTTAAGGCAAAAGCTAAAAGTCGAAAGAGTCAATGAGTAGAGGGAGAAGTGTATTCAGAAA
33370735 CTAGAAGTTCTAAGGAAAACGACAATAAAGGGAGTACAGAG-AAAGAACAAAATCGATATAGCCC
391 CTAGAAGTTCTAAGGAAAACGACAATAAAGGGAGTACAGAGAAAAGAACAAAATCGATATAGCCC
33370799 TAACAAGAAAATGCCTGAAAGAAAGGAAAATCG-AAAGAAATAGTGAAGAAAGCTGACATATTCG
456 TAACAAGAAAATGCCTGAAAGAAAGGAAAATCGAAAAGAAATAGTGAAGAAAGCTGACATATTCG
33370863 GCCAAATGAGTACAGATGCTAGGGGAAAAGAAACAAAAGAGGTTGGTAATCAAAAGATGTTTAAG
521 GCCAAATGAGTACAGATGCTAGGGGAAAAGAAACAAAAGAGGTTGGTAATCAAAAGATGTTTAAG
*
33370928 AGACCAAAATGCGAAGACCCAAAATGACCCAAAATGACCAAAAACTAACACCAAAAATGGAGAGG
586 AGACCAAAATGCGAAGACCCAAAATGACCCAAAATGACCAAAAACAAACACCAAAAATGGAGAGG
*
33370993 TTGAAATTCACTCAGAAAGAGCACAAAGGAAATGACTACAATCTCTACTTTTTTCTAAAAAAAAC
651 TTGAAATTCACTCAGAAAGAGCACAAAAGAAATGACTACAATCTCTACTTTTTTCT-AAAAAAAC
* *
33371058 CAAAAATTCCAAATGTGAGAGTCCATAATCGACACACACACTATCACTCTCCTA
715 C----ATGCCAAATGTGAGAGTCCACAATCGACACACACACTATCACTCTCCTA
33371112 AAAGATGAGGAAAAGTTCGTACACTTGGTTATCCCTTGCAACTCCCCCACTCTTCGAAAGACTAG
1 AAAGATGAGGAAAAGTTCGTACACTTGGTTATCCCTTGCAACTCCCCCACTCTTCGAAAGACTAG
33371177 GAACCCACGAACACCACACCAAACAAAAGAGATGAGATTCGGCAATAGTAACAAAAGAGACCGAG
66 GAACCCACGAACACCACACCAAACAAAAGAGATGAGATTCGGCAATAGTAACAAAAGAGACCGAG
33371242 AGAAAAGAAAGACTTAATCAAAGTTGAAAGAAAAAAAAGAGACCGAGCGTTTACCGATTTGCAGA
131 AGAAAAGAAAGACTTAATCAAAGTTGAAAGAAAAAAAAGAGACCGAGCGTTTACCGATTTGCAGA
33371307 GAACGCTTGCACAACCGTGATTAACCAGAGGAGTTTTGAACTTGACCAATAAGTCAAGATAAGAA
196 GAACGCTTGCACAACCGTGATTAACCAGAGGAGTTTTGAACTTGACCAATAAGTCAAGATAAGAA
33371372 GAGAAGAAAGGAAGGATGCAATCGATTAGGGAGATATTCAGACGAGCCAAGGGAAAAAGAAGAAA
261 GAGAAGAAAGGAAGGATGCAATCGATTAGGGAGATATTCAGACGAGCCAAGGGAAAAAGAAGAAA
*
33371437 TTCGGTTACGGCAAAAGCTAAAAGTCGAAAGAGTCAATGAGTAGAGGGAGAAGTGTATT
326 TTCGGTTAAGGCAAAAGCTAAAAGTCGAAAGAGTCAATGAGTAGAGGGAGAAGTGTATT
33371496 ACTCCCCCTA
Statistics
Matches: 1134, Mismatches: 12, Indels: 8
0.98 0.01 0.01
Matches are distributed among these distances:
762 215 0.19
763 9 0.01
764 55 0.05
765 427 0.38
767 428 0.38
ACGTcount: A:0.44, C:0.17, G:0.22, T:0.17
Consensus pattern (764 bp):
AAAGATGAGGAAAAGTTCGTACACTTGGTTATCCCTTGCAACTCCCCCACTCTTCGAAAGACTAG
GAACCCACGAACACCACACCAAACAAAAGAGATGAGATTCGGCAATAGTAACAAAAGAGACCGAG
AGAAAAGAAAGACTTAATCAAAGTTGAAAGAAAAAAAAGAGACCGAGCGTTTACCGATTTGCAGA
GAACGCTTGCACAACCGTGATTAACCAGAGGAGTTTTGAACTTGACCAATAAGTCAAGATAAGAA
GAGAAGAAAGGAAGGATGCAATCGATTAGGGAGATATTCAGACGAGCCAAGGGAAAAAGAAGAAA
TTCGGTTAAGGCAAAAGCTAAAAGTCGAAAGAGTCAATGAGTAGAGGGAGAAGTGTATTCAGAAA
CTAGAAGTTCTAAGGAAAACGACAATAAAGGGAGTACAGAGAAAAGAACAAAATCGATATAGCCC
TAACAAGAAAATGCCTGAAAGAAAGGAAAATCGAAAAGAAATAGTGAAGAAAGCTGACATATTCG
GCCAAATGAGTACAGATGCTAGGGGAAAAGAAACAAAAGAGGTTGGTAATCAAAAGATGTTTAAG
AGACCAAAATGCGAAGACCCAAAATGACCCAAAATGACCAAAAACAAACACCAAAAATGGAGAGG
TTGAAATTCACTCAGAAAGAGCACAAAAGAAATGACTACAATCTCTACTTTTTTCTAAAAAAACC
ATGCCAAATGTGAGAGTCCACAATCGACACACACACTATCACTCTCCTA
Found at i:33374265 original size:40 final size:40
Alignment explanation
Indices: 33374202--33374421 Score: 313
Period size: 40 Copynumber: 5.6 Consensus size: 40
33374192 ATTCGGATTG
33374202 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
33374242 ATATCCGGGCTAAG-CCTCAAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCC-CGAAGGCATTTGTGCGAGTTACT
* *
33374282 ATAACC-GGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
33374321 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* **
33374361 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
33374401 ATATCC-GGCTAA-ACCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
33374422 TACTTGGTTT
Statistics
Matches: 164, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
38 8 0.05
39 41 0.25
40 115 0.70
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:33374344 original size:79 final size:79
Alignment explanation
Indices: 33374202--33374421 Score: 327
Period size: 79 Copynumber: 2.8 Consensus size: 79
33374192 ATTCGGATTG
*
33374202 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGCCTCAAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGCC-CGAAGGCA
*
33374267 TTTGTGCGAGTTACT
65 ATTGTGCGAGTTACT
* * *
33374282 ATAACC-GGCCAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAG-CCCGAAGGCA
33374346 ATTGTGCGAGTTACT
65 ATTGTGCGAGTTACT
* ** *
33374361 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGGCTATATCC-GGCTAAACCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGCCCGAAGG
33374422 TACTTGGTTT
Statistics
Matches: 126, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
78 8 0.06
79 77 0.61
80 41 0.33
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGCCCGAAGGCAA
TTGTGCGAGTTACT
Done.