Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 107 of 356
Found at i:33755229 original size:15 final size:15
Alignment explanation
Indices: 33755197--33755235 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
33755187 GGCTTCCTTC
*
33755197 TTATTATTATTTGGA
1 TTATTATTATTTGCA
*
33755212 TTATTATTATTTTCA
1 TTATTATTATTTGCA
*
33755227 TTATAATTA
1 TTATTATTA
33755236 CGAGAAGTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.31, C:0.03, G:0.05, T:0.62
Consensus pattern (15 bp):
TTATTATTATTTGCA
Found at i:33758795 original size:21 final size:21
Alignment explanation
Indices: 33758763--33758813 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
33758753 CATAAAATTT
33758763 ATTA-GAAATTTACAAAAAAA
1 ATTATGAAATTTACAAAAAAA
* * *
33758783 ATTATGAAGTTTATAAAAATA
1 ATTATGAAATTTACAAAAAAA
33758804 ATTAT-AAATT
1 ATTATGAAATT
33758814 ATTGAACCAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
20 8 0.31
21 18 0.69
ACGTcount: A:0.57, C:0.02, G:0.06, T:0.35
Consensus pattern (21 bp):
ATTATGAAATTTACAAAAAAA
Found at i:33758967 original size:35 final size:35
Alignment explanation
Indices: 33758928--33759002 Score: 89
Period size: 35 Copynumber: 2.1 Consensus size: 35
33758918 TTAAAAATGC
* *
33758928 AAAAATTATTAAAAATAATT-AGAAGTTTATAAAATA
1 AAAAATTATTAAAAA-AATTGA-AAATTTATAAAAAA
* *
33758964 AAAAATTATTGAAAACATTGAAAATTTATAAAAAA
1 AAAAATTATTAAAAAAATTGAAAATTTATAAAAAA
33758999 AAAA
1 AAAA
33759003 TTGTTATTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
35 19 0.56
36 15 0.44
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.29
Consensus pattern (35 bp):
AAAAATTATTAAAAAAATTGAAAATTTATAAAAAA
Found at i:33758968 original size:36 final size:34
Alignment explanation
Indices: 33758928--33759004 Score: 93
Period size: 36 Copynumber: 2.2 Consensus size: 34
33758918 TTAAAAATGC
*
33758928 AAAAATTATTAAAAATAATT-AGAAGTTTATAAAATA
1 AAAAATTATTAAAAA-AATTGA-AAATTTATAAAA-A
* *
33758964 AAAAATTATTGAAAACATTGAAAATTTATAAAAA
1 AAAAATTATTAAAAAAATTGAAAATTTATAAAAA
33758998 AAAAATT
1 AAAAATT
33759005 GTTATTTTGG
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
34 8 0.22
35 14 0.38
36 15 0.41
ACGTcount: A:0.62, C:0.01, G:0.05, T:0.31
Consensus pattern (34 bp):
AAAAATTATTAAAAAAATTGAAAATTTATAAAAA
Found at i:33759200 original size:9 final size:9
Alignment explanation
Indices: 33759188--33759213 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
33759178 AAAATATATT
33759188 AATATTTTG
1 AATATTTTG
33759197 AATATTTTG
1 AATATTTTG
33759206 AATATTTT
1 AATATTTT
33759214 ATAATTAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.58
Consensus pattern (9 bp):
AATATTTTG
Found at i:33762457 original size:17 final size:17
Alignment explanation
Indices: 33762427--33762461 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
33762417 TAAGGATTAA
33762427 ATTATAAAAGTTTAATT
1 ATTATAAAAGTTTAATT
* *
33762444 ATTATTAAATTTTAATT
1 ATTATAAAAGTTTAATT
33762461 A
1 A
33762462 AGAAAAAAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (17 bp):
ATTATAAAAGTTTAATT
Found at i:33762626 original size:14 final size:13
Alignment explanation
Indices: 33762599--33762629 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
33762589 AAATTAATGT
33762599 TTAATTAAATTAA
1 TTAATTAAATTAA
33762612 TTAATTAAGATTAA
1 TTAATTAA-ATTAA
33762626 TTAA
1 TTAA
33762630 GTTATAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.47
14 9 0.53
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (13 bp):
TTAATTAAATTAA
Found at i:33768939 original size:48 final size:48
Alignment explanation
Indices: 33768868--33769157 Score: 463
Period size: 48 Copynumber: 6.0 Consensus size: 48
33768858 CAAGATAAAT
* *
33768868 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
33768916 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
33768964 ATATATATATGTGGTAAAGCCGGATGGCTAATGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
** **
33769012 ATATGCATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
33769060 ATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
33769108 ATATGTATATTTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
33769156 AT
1 AT
33769158 GTGTGTATAT
Statistics
Matches: 221, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 221 1.00
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:33769339 original size:37 final size:37
Alignment explanation
Indices: 33769287--33769407 Score: 206
Period size: 37 Copynumber: 3.3 Consensus size: 37
33769277 GCATGAAACT
33769287 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
1 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
*
33769324 TAGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
1 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
* *
33769361 TGGAGATTTTGTCCGGGTAAGACCCGATAACTACGTG
1 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
*
33769398 TGGGGATTAT
1 TGGAGATTAT
33769408 TCGAGCTAGA
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 78 1.00
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.26
Consensus pattern (37 bp):
TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
Found at i:33772912 original size:64 final size:65
Alignment explanation
Indices: 33772813--33772933 Score: 181
Period size: 64 Copynumber: 1.9 Consensus size: 65
33772803 TTTAACAAAA
* * * **
33772813 TTTTTTCTCTTATTTTTTTTCTTGTCAAACACCATTTTT-TTCTTCAAAACACATGGCCTGCCAT
1 TTTTTTCTCTCATTTTCTCTCTTACCAAACACCATTTTTCTTCTTCAAAACACATGGCCTGCCAT
*
33772877 TTTTTTCTCTCATTTTCTCTCTTACCAAACACCATTTTTCTTCTTCAAAACATATGG
1 TTTTTTCTCTCATTTTCTCTCTTACCAAACACCATTTTTCTTCTTCAAAACACATGG
33772934 TTAGCTCATT
Statistics
Matches: 50, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
64 34 0.68
65 16 0.32
ACGTcount: A:0.21, C:0.25, G:0.05, T:0.49
Consensus pattern (65 bp):
TTTTTTCTCTCATTTTCTCTCTTACCAAACACCATTTTTCTTCTTCAAAACACATGGCCTGCCAT
Found at i:33782466 original size:294 final size:294
Alignment explanation
Indices: 33781928--33782495 Score: 845
Period size: 294 Copynumber: 1.9 Consensus size: 294
33781918 TTTATTTAAG
* * ** *
33781928 TCCTCTAACAACCTTTTGGACTTTTGTAGCCGTTAGAAACAAATTAGAGTCGTTGCAACCATAAA
1 TCCTCTAACAACCTTGTGAACTTTTGTAGCCACTAGAAACAAATTAGAGTCATTGCAACCATAAA
* *
33781993 AACTAGCATTAAATGCAGTCTACAGCTTCGTTGTAATGGTAGAAGGAGTCTTGTATTGGTAGAAG
66 AACTAGCATCAAATGCAGTCTACAGCTTCGTTGTAATGATAGAAGGAGTCTTGTATTGGTAGAAG
* *
33782058 TCTTTCCAAAATATGACCATTAGGCTTGTTCTATCAATAGAAGTTCTCATGTATCGCTAGAACTT
131 TCTTTCCAAAATATGACCATCAGGCTTGTTCTATCAATAGAAGTTCTCATGTATCGCTAGAACTC
* * *
33782123 TGAGGGTTTCATTTGGTATCAATAGAACCCATTAGAGTATCGATAGAAGTGCAGGAGAGGCTGAA
196 TAAGGGTTTCATTTGGTATCAATAGAACACATCAGAGTATCGATAGAAGTGCAGGAGAGGCTGAA
33782188 CTTTGGCTACTATTTTGACTTGTTTTGGTAGAAA
261 CTTTGGCTACTATTTTGACTTGTTTTGGTAGAAA
* *
33782222 TCCTCTAACAACCTTGTGAACTTTTGTAGCCACTAGAAACAAATTAGAGTTATTGCAGCCATAAA
1 TCCTCTAACAACCTTGTGAACTTTTGTAGCCACTAGAAACAAATTAGAGTCATTGCAACCATAAA
* *
33782287 AATTAGCATCAAATGCAGTCTGCAGCTTCGTTGT-ATCGATAGAA-GAGGTCTTGTATTGGTAGA
66 AACTAGCATCAAATGCAGTCTACAGCTTCGTTGTAAT-GATAGAAGGA-GTCTTGTATTGGTAGA
* * ** * * *
33782350 AGTCTTTCTAAAATATGACCGTCAGGCTTGTTCTATCTGTAGAAGTTCTCTTGTATTGGTAGAAC
129 AGTCTTTCCAAAATATGACCATCAGGCTTGTTCTATCAATAGAAGTTCTCATGTATCGCTAGAAC
* * * *
33782415 TCTAAGGGTTTCATTTGGTAT-AAGTAGAACATATCAGAGTATTGGTAGAAGTGCAGGGGAGGCT
194 TCTAAGGGTTTCATTTGGTATCAA-TAGAACACATCAGAGTATCGATAGAAGTGCAGGAGAGGCT
33782479 GAACTTTGGCTACTATT
258 GAACTTTGGCTACTATT
33782496 GTAATAGCCT
Statistics
Matches: 244, Mismatches: 27, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
293 6 0.02
294 238 0.98
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.33
Consensus pattern (294 bp):
TCCTCTAACAACCTTGTGAACTTTTGTAGCCACTAGAAACAAATTAGAGTCATTGCAACCATAAA
AACTAGCATCAAATGCAGTCTACAGCTTCGTTGTAATGATAGAAGGAGTCTTGTATTGGTAGAAG
TCTTTCCAAAATATGACCATCAGGCTTGTTCTATCAATAGAAGTTCTCATGTATCGCTAGAACTC
TAAGGGTTTCATTTGGTATCAATAGAACACATCAGAGTATCGATAGAAGTGCAGGAGAGGCTGAA
CTTTGGCTACTATTTTGACTTGTTTTGGTAGAAA
Found at i:33788763 original size:42 final size:42
Alignment explanation
Indices: 33788714--33788867 Score: 191
Period size: 42 Copynumber: 3.6 Consensus size: 42
33788704 TGAGATTATG
* * *
33788714 TGTAAGACCATATCTGAGATATGGCATCTATATGAGATTTCG
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCA
* * * *
33788756 TATAAGACCATATTTGGGATATGGCATCGGTATGAGATTTCT
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCA
* * * * *
33788798 TGTAAGACCATAGCTGGGCTATTAGCATCGATACGAGATTACA
1 TGTAAGACCATATCTGGGATA-TGGCATCGATATGAGATTTCA
33788841 TGTAAGACCATATCTGGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
33788868 TGGTACAGTA
Statistics
Matches: 93, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
42 58 0.62
43 35 0.38
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCA
Found at i:33788850 original size:85 final size:84
Alignment explanation
Indices: 33788714--33788872 Score: 210
Period size: 85 Copynumber: 1.9 Consensus size: 84
33788704 TGAGATTATG
* * * * * * *
33788714 TGTAAGACCATATCTGAGATATGGCATCTATATGAGATTTCGTATAAGACCATATTTGGGATATG
1 TGTAAGACCATAGCTGAGATATAGCATCGATACGAGATTACATATAAGACCATATCTGGGATATG
33788779 GCATCGGTATGAGATTTCT
66 GCATCGGTATGAGATTTCT
* * *
33788798 TGTAAGACCATAGCTGGGCTATTAGCATCGATACGAGATTACATGTAAGACCATATCTGGGATAT
1 TGTAAGACCATAGCTGAGATA-TAGCATCGATACGAGATTACATATAAGACCATATCTGGGATAT
*
33788863 GGCATTGGTA
65 GGCATCGGTA
33788873 CAGTACCGTG
Statistics
Matches: 63, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
84 18 0.29
85 45 0.71
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (84 bp):
TGTAAGACCATAGCTGAGATATAGCATCGATACGAGATTACATATAAGACCATATCTGGGATATG
GCATCGGTATGAGATTTCT
Found at i:33803012 original size:40 final size:40
Alignment explanation
Indices: 33802947--33803167 Score: 313
Period size: 40 Copynumber: 5.6 Consensus size: 40
33802937 ATTCGGATTG
33802947 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
33802986 ATATCCGGGCTAAGTCTCGAAGGCATTTGTACGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
33803026 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
33803066 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
33803106 ATAACTGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* **
33803146 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
33803168 TACTTGGTTT
Statistics
Matches: 164, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 29 0.18
40 135 0.82
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:33821036 original size:18 final size:18
Alignment explanation
Indices: 33821013--33821050 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
33821003 TATTTAGTAA
33821013 AATATTGAGAAGAATTGG
1 AATATTGAGAAGAATTGG
33821031 AATATTGAGAAGAATTGG
1 AATATTGAGAAGAATTGG
33821049 AA
1 AA
33821051 CCTTGAGTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.47, C:0.00, G:0.26, T:0.26
Consensus pattern (18 bp):
AATATTGAGAAGAATTGG
Found at i:33821056 original size:18 final size:18
Alignment explanation
Indices: 33821016--33821057 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
33821006 TTAGTAAAAT
*
33821016 ATTGAGAAGAATTGGAAT
1 ATTGAGAAGAATTGGAAC
33821034 ATTGAGAAGAATTGGAAC
1 ATTGAGAAGAATTGGAAC
*
33821052 CTTGAG
1 ATTGAG
33821058 TTCTTAGATG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.40, C:0.05, G:0.29, T:0.26
Consensus pattern (18 bp):
ATTGAGAAGAATTGGAAC
Found at i:33823447 original size:44 final size:44
Alignment explanation
Indices: 33823380--33823494 Score: 151
Period size: 44 Copynumber: 2.6 Consensus size: 44
33823370 ATATACAAGC
* * **
33823380 TAGTGTAAGACCTG-CGTGAGACATGGCGTTAGCTTGTGGTGTGT
1 TAGTGTAAGACCTGTC-TGGGACATGGCGTCAGCTTGTGACGTGT
* *
33823424 TAGTATAAGACCTGTCTGGGACATTGCGTCAGCTTGTGACGTGT
1 TAGTGTAAGACCTGTCTGGGACATGGCGTCAGCTTGTGACGTGT
*
33823468 CAGTGTAAGACCTGTCTGGGACATGGC
1 TAGTGTAAGACCTGTCTGGGACATGGC
33823495 ATCGACACCG
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
44 60 0.98
45 1 0.02
ACGTcount: A:0.20, C:0.17, G:0.33, T:0.30
Consensus pattern (44 bp):
TAGTGTAAGACCTGTCTGGGACATGGCGTCAGCTTGTGACGTGT
Found at i:33823590 original size:49 final size:49
Alignment explanation
Indices: 33823468--33823595 Score: 161
Period size: 49 Copynumber: 2.6 Consensus size: 49
33823458 TGTGACGTGT
33823468 CAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAGAGC
* * * * *
33823517 AAGTCTAAGACCTGTCTGGGACATGGCATCGAC-CTCGCTATATG-TAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACAC-CGATAGATGAGAGC
* *
33823565 CAGTGTAAGACCATGTTTGGAACATGGCATC
1 CAGTGTAAGACC-TGTCTGGGACATGGCATC
33823596 TGCATCTTAA
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
48 14 0.21
49 54 0.79
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAGAGC
Found at i:33823616 original size:32 final size:32
Alignment explanation
Indices: 33823575--33823645 Score: 133
Period size: 32 Copynumber: 2.2 Consensus size: 32
33823565 CAGTGTAAGA
33823575 CCATGTTTGGAACATGGCATCTGCATCTTAAC
1 CCATGTTTGGAACATGGCATCTGCATCTTAAC
*
33823607 CCATGTTTGGAACATGGCATCTGTATCTTAAC
1 CCATGTTTGGAACATGGCATCTGCATCTTAAC
33823639 CCATGTT
1 CCATGTT
33823646 AGGGCTATTG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.34
Consensus pattern (32 bp):
CCATGTTTGGAACATGGCATCTGCATCTTAAC
Found at i:33824107 original size:21 final size:20
Alignment explanation
Indices: 33824081--33824120 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
33824071 GTTATAATGA
*
33824081 CCACACGGGTGTGTTGCCCTT
1 CCACACGGGCGTG-TGCCCTT
33824102 CCACACGGGCGTGTGCCCT
1 CCACACGGGCGTGTGCCCT
33824121 GTTTCAAGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.10, C:0.38, G:0.30, T:0.23
Consensus pattern (20 bp):
CCACACGGGCGTGTGCCCTT
Found at i:33830393 original size:46 final size:45
Alignment explanation
Indices: 33830269--33830394 Score: 164
Period size: 46 Copynumber: 2.8 Consensus size: 45
33830259 TGATATGTGT
** *
33830269 GCTAGTGTAAGACATGTCTGGGACATGCATCAACCATAGCATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATC-GGCATAGCACGAGA
* *
33830315 GTTAGTGTAAGACATGTCTAGGACATGCATCGGCATTAAG-ACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCA-T-AGCACGAGA
*
33830361 GCTAGTGTAAGACATGTCTGGGACATGTATCGGC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGC
33830395 CTCGCGATAT
Statistics
Matches: 70, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
45 2 0.03
46 66 0.94
47 2 0.03
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATAGCACGAGA
Found at i:33830511 original size:49 final size:49
Alignment explanation
Indices: 33830455--33830580 Score: 182
Period size: 49 Copynumber: 2.6 Consensus size: 49
33830445 TGTGGTGTGT
* *
33830455 CAGTGTAAGACCTGTCTGGGGCATGGCATCGACAC-CAATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTCAATAGATGAAAGC
** *
33830504 CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGCTATATGAAAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCAATAGATGAAAGC
33830553 CAGTGTAAGACCATGTCTGGGACATGGC
1 CAGTGTAAGACC-TGTCTGGGACATGGC
33830581 GTCGGCATCT
Statistics
Matches: 70, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
48 1 0.01
49 54 0.77
50 15 0.21
ACGTcount: A:0.27, C:0.23, G:0.29, T:0.21
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCAATAGATGAAAGC
Found at i:33831787 original size:21 final size:21
Alignment explanation
Indices: 33831761--33831803 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
33831751 GTTATAATGA
33831761 CCACACGGGCGTGTTGCCCTT
1 CCACACGGGCGTGTTGCCCTT
33831782 CCACACGGGCGTGTTGCCCTT
1 CCACACGGGCGTGTTGCCCTT
33831803 C
1 C
33831804 TATATAGGCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.09, C:0.40, G:0.28, T:0.23
Consensus pattern (21 bp):
CCACACGGGCGTGTTGCCCTT
Found at i:33837580 original size:24 final size:24
Alignment explanation
Indices: 33837529--33837590 Score: 63
Period size: 24 Copynumber: 2.5 Consensus size: 24
33837519 AAATTTTATG
* *
33837529 AAAAATAAAAACT-CTTTAAAATTC
1 AAAAATAAAAA-TACTTTAAAAATA
*
33837553 AAAAATAAAAATATTTTAAAAATA
1 AAAAATAAAAATACTTTAAAAATA
*
33837577 AAAAAGAATAAATA
1 AAAAATAA-AAATA
33837591 AAAAATTTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
23 1 0.03
24 26 0.81
25 5 0.16
ACGTcount: A:0.68, C:0.05, G:0.02, T:0.26
Consensus pattern (24 bp):
AAAAATAAAAATACTTTAAAAATA
Found at i:33837838 original size:10 final size:9
Alignment explanation
Indices: 33837813--33837837 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
33837803 CAAGTCAATC
33837813 AATTTTTAA
1 AATTTTTAA
33837822 AATTTTTAA
1 AATTTTTAA
33837831 AATTTTT
1 AATTTTT
33837838 TGCCCCTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (9 bp):
AATTTTTAA
Found at i:33837991 original size:19 final size:19
Alignment explanation
Indices: 33837968--33838010 Score: 61
Period size: 18 Copynumber: 2.2 Consensus size: 19
33837958 AAAATATGAA
33837968 AAAAAAACTCTTTAAAAT-TC
1 AAAAAAA-T-TTTAAAATATC
33837988 AAAAAAATTTTAAAATATC
1 AAAAAAATTTTAAAATATC
33838007 AAAA
1 AAAA
33838011 TATGAAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.36
19 7 0.32
20 7 0.32
ACGTcount: A:0.63, C:0.09, G:0.00, T:0.28
Consensus pattern (19 bp):
AAAAAAATTTTAAAATATC
Found at i:33838236 original size:30 final size:30
Alignment explanation
Indices: 33838198--33838275 Score: 104
Period size: 30 Copynumber: 2.6 Consensus size: 30
33838188 AAAAATATTT
*
33838198 TTTATTTTTTAT-TTTTTTATTTTAATGAG
1 TTTATTTTTTATAATTTTTATTTTAATGAG
* *
33838227 TTTATTTTTTATAATTTTTATTTTAATAAA
1 TTTATTTTTTATAATTTTTATTTTAATGAG
*
33838257 TTATAATTTTTATAATTTT
1 TT-TATTTTTTATAATTTT
33838276 ATGTTTTTTA
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
29 12 0.28
30 16 0.37
31 15 0.35
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (30 bp):
TTTATTTTTTATAATTTTTATTTTAATGAG
Found at i:33838246 original size:16 final size:16
Alignment explanation
Indices: 33838196--33838287 Score: 66
Period size: 15 Copynumber: 5.9 Consensus size: 16
33838186 AAAAAAATAT
*
33838196 TTTTTATTTTTTAT-T
1 TTTTTATTTTTTATAA
* *
33838211 TTTTTA-TTTTAATGA
1 TTTTTATTTTTTATAA
*
33838226 -GTTTATTTTTTATAA
1 TTTTTATTTTTTATAA
*
33838241 TTTTTA-TTTTAATAA
1 TTTTTATTTTTTATAA
* * *
33838256 ATTATAATTTTTATAA
1 TTTTTATTTTTTATAA
*
33838272 TTTTATGTTTTTTATA
1 TTTT-TATTTTTTATA
33838288 TAAAAAAATT
Statistics
Matches: 58, Mismatches: 14, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
14 10 0.17
15 25 0.43
16 14 0.24
17 9 0.16
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (16 bp):
TTTTTATTTTTTATAA
Found at i:33838778 original size:28 final size:28
Alignment explanation
Indices: 33838716--33838778 Score: 67
Period size: 27 Copynumber: 2.2 Consensus size: 28
33838706 TATGTATATT
33838716 AAATAATAAAATATAAATTAAAATTATA
1 AAATAATAAAATATAAATTAAAATTATA
* * *
33838744 TATTAAT-AAATAGT-ATTTAAAATTACTA
1 AAATAATAAAATA-TAAATTAAAATTA-TA
33838772 AAATAAT
1 AAATAAT
33838779 TGTATTACAT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
27 15 0.54
28 13 0.46
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.37
Consensus pattern (28 bp):
AAATAATAAAATATAAATTAAAATTATA
Found at i:33847141 original size:38 final size:38
Alignment explanation
Indices: 33847076--33847237 Score: 126
Period size: 38 Copynumber: 4.0 Consensus size: 38
33847066 ATTGATTCAT
* *
33847076 TAACGTGGTGCAAAGTGAATATACCACAGTTAAACATG
1 TAACGTGGTGCTAAGTGGATATACCACAGTTAAACATG
* * *
33847114 TAATGTGGTGCTAAGTGGATATGCCACAGTTACATATATTG
1 TAACGTGGTGCTAAGTGGATATACCACAGTTA-A-ACA-TG
* * *
33847155 ATTCATTAACGTGGTGTTAAGTGGATATACCACGGTTAAATATG
1 ------TAACGTGGTGCTAAGTGGATATACCACAGTTAAACATG
* * * * *
33847199 TAACGTAGTGTTAAGTGGATATGCCACGGTTATACATG
1 TAACGTGGTGCTAAGTGGATATACCACAGTTAAACATG
33847237 T
1 T
33847238 TAATTTGAAA
Statistics
Matches: 102, Mismatches: 13, Indels: 18
0.77 0.10 0.14
Matches are distributed among these distances:
38 63 0.62
39 1 0.01
40 2 0.02
41 2 0.02
44 2 0.02
45 3 0.03
46 1 0.01
47 28 0.27
ACGTcount: A:0.32, C:0.13, G:0.23, T:0.31
Consensus pattern (38 bp):
TAACGTGGTGCTAAGTGGATATACCACAGTTAAACATG
Found at i:33847167 original size:85 final size:85
Alignment explanation
Indices: 33847024--33847230 Score: 333
Period size: 85 Copynumber: 2.4 Consensus size: 85
33847014 TCATATTGAT
33847024 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCAA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCAA
33847089 AGTGAATATACCACAGTTAA
66 AGTGAATATACCACAGTTAA
* * **
33847109 ACATGTAATGTGGTGCTAAGTGGATATGCCACAGTTACATATATTGATTCATTAACGTGGTGTTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCAA
* *
33847174 AGTGGATATACCACGGTTAA
66 AGTGAATATACCACAGTTAA
* * *
33847194 ATATGTAACGTAGTGTTAAGTGGATATGCCACGGTTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTA
33847231 TACATGTTAA
Statistics
Matches: 111, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
85 111 1.00
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (85 bp):
ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCAA
AGTGAATATACCACAGTTAA
Found at i:33850166 original size:3 final size:3
Alignment explanation
Indices: 33850158--33850183 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
33850148 ATTTCAATTT
33850158 TCA TCA TCA TCA TCA TCA TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TC
33850184 GTATCTTCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.35, G:0.00, T:0.35
Consensus pattern (3 bp):
TCA
Found at i:33851771 original size:60 final size:58
Alignment explanation
Indices: 33851696--33851843 Score: 172
Period size: 60 Copynumber: 2.5 Consensus size: 58
33851686 TTCCTATGCT
* * * *
33851696 TTTTTTTGTCCAATTTGGTACCTAAATTTGATAATTT-TTCCTATTTTGGCAGCTAAGC
1 TTTTTTTGTTCAATTTGGTACCTAAATTTGACAATTTCTT-CTAATTTGGCACCTAAGC
* * * * *
33851754 TTTTTTGGTGTTCAATTTGGCACCTGAACTTGACACTTTCTTCTAATTTGGCCCCTAAGC
1 TTTTTT--TGTTCAATTTGGTACCTAAATTTGACAATTTCTTCTAATTTGGCACCTAAGC
*
33851814 TTTTTTTGTTCAATTTGGTAGCTAAATTTG
1 TTTTTTTGTTCAATTTGGTACCTAAATTTG
33851844 TCAAATAGTA
Statistics
Matches: 74, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
58 26 0.35
60 46 0.62
61 2 0.03
ACGTcount: A:0.20, C:0.17, G:0.16, T:0.47
Consensus pattern (58 bp):
TTTTTTTGTTCAATTTGGTACCTAAATTTGACAATTTCTTCTAATTTGGCACCTAAGC
Found at i:33852889 original size:21 final size:22
Alignment explanation
Indices: 33852864--33852916 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 22
33852854 TTCACTGTTG
*
33852864 TTTTGTTATTG-TTTGTTGCTA
1 TTTTGTTATTGTTTTGTTGCCA
*
33852885 TTTTGATATTGTTTTGTTGCCA
1 TTTTGTTATTGTTTTGTTGCCA
*
33852907 TTTAGTTATT
1 TTTTGTTATT
33852917 ATATTACTAC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
21 10 0.37
22 17 0.63
ACGTcount: A:0.13, C:0.06, G:0.17, T:0.64
Consensus pattern (22 bp):
TTTTGTTATTGTTTTGTTGCCA
Found at i:33854212 original size:15 final size:15
Alignment explanation
Indices: 33854194--33854231 Score: 76
Period size: 15 Copynumber: 2.5 Consensus size: 15
33854184 TAATAATATA
33854194 TAATGTGAAATTGAT
1 TAATGTGAAATTGAT
33854209 TAATGTGAAATTGAT
1 TAATGTGAAATTGAT
33854224 TAATGTGA
1 TAATGTGA
33854232 TCATATCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.21, T:0.39
Consensus pattern (15 bp):
TAATGTGAAATTGAT
Found at i:33856510 original size:58 final size:60
Alignment explanation
Indices: 33856398--33856510 Score: 142
Period size: 58 Copynumber: 1.9 Consensus size: 60
33856388 AAATAGTATC
* * * *
33856398 AAGTTTAGGTACCAAGTTGAACTAAAAAAAAAGCTTAATACTAAATTAGGAAAAATTGCT
1 AAGTTTAGGTACCAAATTGAAATAAAAAAAAAGCTTAATACCAAATTAGAAAAAATTGCT
* *
33856458 AAGTTTAGGTATCAAATT-AAAT-AAAAAAAA-CTTAAGTACCAAATTTGAAAAAA
1 AAGTTTAGGTACCAAATTGAAATAAAAAAAAAGCTTAA-TACCAAATTAGAAAAAA
33856511 ATCTGAAGTT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
57 5 0.11
58 22 0.48
59 3 0.07
60 16 0.35
ACGTcount: A:0.52, C:0.09, G:0.12, T:0.27
Consensus pattern (60 bp):
AAGTTTAGGTACCAAATTGAAATAAAAAAAAAGCTTAATACCAAATTAGAAAAAATTGCT
Found at i:33857729 original size:38 final size:38
Alignment explanation
Indices: 33857678--33857800 Score: 120
Period size: 38 Copynumber: 3.2 Consensus size: 38
33857668 TGGTTGCATG
* * ** * *
33857678 CCTACCATCATTGTTGAACCAAATACATGTTAAACGTG
1 CCTACTATTATTGTTGAACTGAATACATGTTAAACATA
* * *
33857716 CCTATTGTTATTGTTGAACTGAATACATGATAAACATA
1 CCTACTATTATTGTTGAACTGAATACATGTTAAACATA
* * * *
33857754 TCTACTATTATTGTTAAACTGAATACATGTTAAGCATG
1 CCTACTATTATTGTTGAACTGAATACATGTTAAACATA
*
33857792 TCTACTATT
1 CCTACTATT
33857801 TCTATACTGA
Statistics
Matches: 69, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
38 69 1.00
ACGTcount: A:0.34, C:0.17, G:0.12, T:0.37
Consensus pattern (38 bp):
CCTACTATTATTGTTGAACTGAATACATGTTAAACATA
Found at i:33859452 original size:40 final size:40
Alignment explanation
Indices: 33859399--33859610 Score: 246
Period size: 40 Copynumber: 5.3 Consensus size: 40
33859389 TCTTCGAAAT
* *
33859399 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* * * *
33859438 TTAACCCGGGTATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* * * *
33859478 TTAGCCCAGATATATCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* * * *
33859518 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* * * * *
33859558 TTAGCTCGGATAAAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
33859598 TTAGCCCGGATAT
1 TTAGCCCGGATAT
33859611 CATTCAAATG
Statistics
Matches: 151, Mismatches: 21, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 3 0.02
40 148 0.98
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
Found at i:33864393 original size:38 final size:38
Alignment explanation
Indices: 33864333--33864451 Score: 123
Period size: 38 Copynumber: 3.1 Consensus size: 38
33864323 GTTATTGGTT
** * *
33864333 GCATGCCTACCATCACTATTGAACCGAATACATATTAA
1 GCATGCCTACTGTTACTGTTGAACCGAATACATATTAA
* * **
33864371 ACATGCCTATTGTTACTGTTGAAATGAATACATGA-TAA
1 GCATGCCTACTGTTACTGTTGAACCGAATACAT-ATTAA
* * *
33864409 GCATGTCTACTGTTACTGTTAAACCGAATACATGTTAA
1 GCATGCCTACTGTTACTGTTGAACCGAATACATATTAA
33864447 GCATG
1 GCATG
33864452 TTTACTATTT
Statistics
Matches: 64, Mismatches: 15, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
38 63 0.98
39 1 0.02
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.31
Consensus pattern (38 bp):
GCATGCCTACTGTTACTGTTGAACCGAATACATATTAA
Found at i:33864452 original size:38 final size:39
Alignment explanation
Indices: 33864354--33864457 Score: 131
Period size: 38 Copynumber: 2.7 Consensus size: 39
33864344 ATCACTATTG
* * * *
33864354 AACCGAATACATATTAAACATGCCTATTGTTACTGTTGA
1 AACCGAATACATGTTAAGCATGTCTACTGTTACTGTTGA
* *
33864393 AA-TGAATACATGATAAGCATGTCTACTGTTACTGTT-A
1 AACCGAATACATGTTAAGCATGTCTACTGTTACTGTTGA
*
33864430 AACCGAATACATGTTAAGCATGTTTACT
1 AACCGAATACATGTTAAGCATGTCTACT
33864458 ATTTCTATAC
Statistics
Matches: 55, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
37 3 0.05
38 50 0.91
39 2 0.04
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34
Consensus pattern (39 bp):
AACCGAATACATGTTAAGCATGTCTACTGTTACTGTTGA
Found at i:33864724 original size:91 final size:91
Alignment explanation
Indices: 33864553--33864756 Score: 230
Period size: 91 Copynumber: 2.2 Consensus size: 91
33864543 AACTGTAAAC
* * * * **
33864553 ACTGGTGGTTTATCCACAAATTTAGTGGCAACTTTTATTTTCAAATACGTTGTGTTTTCACAACC
1 ACTGGTGGTTCATCCACAAACTTAGTGGCAACTTTTATATGCAAATACGTTGTGCATTCACAACC
* *
33864618 TACTAGCAATGTATTAACCTACAAAA
66 TACTAGCAATATATTAACCAACAAAA
* * * ** *
33864644 ATTGGTAGTTCATCCACAAACTTA-TAGGCAGCTTTTATATGCAAATGTGTTGTGCATTCACAAG
1 ACTGGTGGTTCATCCACAAACTTAGT-GGCAACTTTTATATGCAAATACGTTGTGCATTCACAAC
* *
33864708 CTACTGGCAATATATTAACCAACAAAC
65 CTACTAGCAATATATTAACCAACAAAA
* *
33864735 ACTAGTGGTTCATCTACAAACT
1 ACTGGTGGTTCATCCACAAACT
33864757 AGAGTGTCCG
Statistics
Matches: 92, Mismatches: 20, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
90 1 0.01
91 91 0.99
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.33
Consensus pattern (91 bp):
ACTGGTGGTTCATCCACAAACTTAGTGGCAACTTTTATATGCAAATACGTTGTGCATTCACAACC
TACTAGCAATATATTAACCAACAAAA
Found at i:33875325 original size:14 final size:14
Alignment explanation
Indices: 33875306--33875332 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
33875296 CTACTTCAAG
33875306 CTTACTCCTCAACC
1 CTTACTCCTCAACC
33875320 CTTACTCCTCAAC
1 CTTACTCCTCAAC
33875333 TTGTCAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.48, G:0.00, T:0.30
Consensus pattern (14 bp):
CTTACTCCTCAACC
Found at i:33877466 original size:50 final size:48
Alignment explanation
Indices: 33877312--33877482 Score: 132
Period size: 55 Copynumber: 3.4 Consensus size: 48
33877302 AAAATCAAAG
* * *
33877312 AAATATATAAAAATACATAAGTATTTTTAAATATATATAATAATAAATTAA
1 AAATATAT-AAAATA-ATAAGTATTTTTAAAAAAATATAATAAT-AATTTA
* * *
33877363 AAATATGTCAAAATAAAAAATATTGTTGATAAGAAATAATA-ATATATATAATTTA
1 AAATATAT-AAAATAATAAGTATT-TT--TAA-AAA-AATATA-ATA-ATAATTTA
*
33877418 AAATATATAAGTATATATAAGTATTTTTAAAAAAATATAATAATAATTT-
1 AAATATATAA-AATA-ATAAGTATTTTTAAAAAAATATAATAATAATTTA
*
33877467 AAAT-TTTAAAATAATA
1 AAATATATAAAATAATA
33877483 TTTATAGTAA
Statistics
Matches: 97, Mismatches: 13, Indels: 25
0.72 0.10 0.19
Matches are distributed among these distances:
46 3 0.03
47 3 0.03
48 4 0.04
49 4 0.04
50 14 0.14
51 22 0.23
52 4 0.04
53 6 0.06
54 5 0.05
55 23 0.24
56 9 0.09
ACGTcount: A:0.57, C:0.01, G:0.04, T:0.37
Consensus pattern (48 bp):
AAATATATAAAATAATAAGTATTTTTAAAAAAATATAATAATAATTTA
Found at i:33877493 original size:29 final size:29
Alignment explanation
Indices: 33877442--33877500 Score: 75
Period size: 28 Copynumber: 2.0 Consensus size: 29
33877432 ATATAAGTAT
33877442 TTTTAAAAAAATATAATAATAAT-TTAAA
1 TTTTAAAAAAATATAATAATAATATTAAA
* * *
33877470 TTTTAAAATAATATTTATAGTAATATTAAA
1 TTTTAAAAAAATA-TAATAATAATATTAAA
33877500 T
1 T
33877501 AAATATAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 12 0.46
29 8 0.31
30 6 0.23
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (29 bp):
TTTTAAAAAAATATAATAATAATATTAAA
Found at i:33877518 original size:25 final size:26
Alignment explanation
Indices: 33877475--33877528 Score: 74
Period size: 25 Copynumber: 2.1 Consensus size: 26
33877465 TTAAATTTTA
*
33877475 AAATAATATTTATAGTAATATTAAAT
1 AAATAATAATTATAGTAATATTAAAT
* *
33877501 AAAT-ATAATTATATTAATATTACAT
1 AAATAATAATTATAGTAATATTAAAT
33877526 AAA
1 AAA
33877529 ATCCCCACCC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
25 21 0.84
26 4 0.16
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (26 bp):
AAATAATAATTATAGTAATATTAAAT
Found at i:33883425 original size:34 final size:31
Alignment explanation
Indices: 33883380--33883454 Score: 91
Period size: 34 Copynumber: 2.4 Consensus size: 31
33883370 CGGGACTTTA
* *
33883380 AGCCGGATATAATACCAGACAAAGCTACGGATTT
1 AGCCCGATATAATA-CAG-CAAAGC-ACGGACTT
33883414 AGCCCGATATAATACAGCAAAGCACGGACTT
1 AGCCCGATATAATACAGCAAAGCACGGACTT
33883445 A--CCGATATAA
1 AGCCCGATATAA
33883455 CACACGAAGC
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
29 9 0.23
31 8 0.21
32 6 0.15
33 3 0.08
34 13 0.33
ACGTcount: A:0.40, C:0.23, G:0.19, T:0.19
Consensus pattern (31 bp):
AGCCCGATATAATACAGCAAAGCACGGACTT
Found at i:33883451 original size:29 final size:33
Alignment explanation
Indices: 33883385--33883454 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 33
33883375 CTTTAAGCCG
*
33883385 GATATAATACCAGACAAAGCTACGGATTTAGCCC
1 GATATAATACCAGACAAAGCTACGGACTTA-CCC
33883419 GATATAATA-CAG-CAAAGC-ACGGACTTA-CC
1 GATATAATACCAGACAAAGCTACGGACTTACCC
33883448 GATATAA
1 GATATAA
33883455 CACACGAAGC
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
29 9 0.26
31 8 0.23
32 6 0.17
33 3 0.09
34 9 0.26
ACGTcount: A:0.41, C:0.21, G:0.17, T:0.20
Consensus pattern (33 bp):
GATATAATACCAGACAAAGCTACGGACTTACCC
Found at i:33883557 original size:67 final size:67
Alignment explanation
Indices: 33883448--33883588 Score: 182
Period size: 67 Copynumber: 2.1 Consensus size: 67
33883438 CGGACTTACC
*
33883448 GATATAA-CACACGAAGCTTCGGACACCGGATATAAACCAGCACGAATGCCTTCGGGAC-TAGCC
1 GATATAACCACACGAAGCTTCGGACACCGGATATAAACCAGCACGAATGCCTTCGAGACTTAGCC
33883511 CG
66 CG
* *
33883513 GATATAACCACACGATGCTTC-GACTTAGCC-GATATAAACTAGCACGAATGCCTTCGAGACTTA
1 GATATAACCACACGAAGCTTCGGAC--A-CCGGATATAAACCAGCACGAATGCCTTCGAGACTTA
*
33883576 GCCTG
63 GCCCG
*
33883581 AATATAAC
1 GATATAAC
33883589 ACCAGCACGA
Statistics
Matches: 66, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
65 10 0.15
66 12 0.18
67 29 0.44
68 15 0.23
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20
Consensus pattern (67 bp):
GATATAACCACACGAAGCTTCGGACACCGGATATAAACCAGCACGAATGCCTTCGAGACTTAGCC
CG
Found at i:33883600 original size:39 final size:38
Alignment explanation
Indices: 33883473--33883626 Score: 200
Period size: 39 Copynumber: 4.3 Consensus size: 38
33883463 GCTTCGGACA
33883473 CCGGATATAAACCAGCACGAATGCCTTCGGGAC-TAGC
1 CCGGATATAAACCAGCACGAATGCCTTCGGGACTTAGC
33883510 CCGGATAT-AACCA-CACG-ATG-CTTC--GACTTAG-
1 CCGGATATAAACCAGCACGAATGCCTTCGGGACTTAGC
* *
33883541 CC-GATATAAACTAGCACGAATGCCTTCGAGACTTAGC
1 CCGGATATAAACCAGCACGAATGCCTTCGGGACTTAGC
* *
33883578 CTGAATATAACACCAGCACGAATGCCTTCGGGACTTAGC
1 CCGGATATAA-ACCAGCACGAATGCCTTCGGGACTTAGC
33883617 CCGGATATAA
1 CCGGATATAA
33883627 TTCTCCATTA
Statistics
Matches: 100, Mismatches: 7, Indels: 18
0.80 0.06 0.14
Matches are distributed among these distances:
30 5 0.05
31 9 0.09
32 7 0.07
33 7 0.07
34 7 0.07
35 4 0.04
36 12 0.12
37 9 0.09
38 6 0.06
39 34 0.34
ACGTcount: A:0.31, C:0.28, G:0.21, T:0.20
Consensus pattern (38 bp):
CCGGATATAAACCAGCACGAATGCCTTCGGGACTTAGC
Found at i:33886720 original size:79 final size:74
Alignment explanation
Indices: 33886625--33886798 Score: 246
Period size: 79 Copynumber: 2.3 Consensus size: 74
33886615 AATACATATT
*
33886625 TTCGGGTCTTAGCCCGGATATATCATCTCGCATTATTGCCTTCGGGTCATAGCCCGGATATATTA
1 TTCGGGTCTTAGCCCGGATATATCA-CTCGCA-TAATGCC-TC-GGTCATAGCCCGGATATA-TA
33886690 ACTCGC-TAATTGCC
61 ACTCGCAT-ATTGCC
* *
33886704 TTCGGGTCTTAGCCCGGATATATCACTCGCATAATGCCTCGGTCTTAGCCCGGATATATCACTCG
1 TTCGGGTCTTAGCCCGGATATATCACTCGCATAATGCCTCGGTCATAGCCCGGATATATAACTCG
33886769 CATATTGCC
66 CATATTGCC
33886778 TTCGGGTC-TAG-CCGGATATAT
1 TTCGGGTCTTAGCCCGGATATAT
33886799 TCCAATGCTC
Statistics
Matches: 91, Mismatches: 3, Indels: 9
0.88 0.03 0.09
Matches are distributed among these distances:
72 10 0.11
73 3 0.03
74 21 0.23
75 18 0.20
76 2 0.02
77 6 0.07
78 6 0.07
79 25 0.27
ACGTcount: A:0.20, C:0.27, G:0.21, T:0.32
Consensus pattern (74 bp):
TTCGGGTCTTAGCCCGGATATATCACTCGCATAATGCCTCGGTCATAGCCCGGATATATAACTCG
CATATTGCC
Found at i:33886755 original size:36 final size:38
Alignment explanation
Indices: 33886625--33886798 Score: 241
Period size: 36 Copynumber: 4.6 Consensus size: 38
33886615 AATACATATT
*
33886625 TTCGGGTCTTAGCCCGGATATATCATCTCGCATTATTGCC
1 TTCGGGTCTTAGCCCGGATATATCA-CTCGCA-TAATGCC
* *
33886665 TTCGGGTCATAGCCCGGATATATTAACTCGC-TAATTGCC
1 TTCGGGTCTTAGCCCGGATATA-TCACTCGCATAA-TGCC
33886704 TTCGGGTCTTAGCCCGGATATATCACTCGCATAATGCC
1 TTCGGGTCTTAGCCCGGATATATCACTCGCATAATGCC
*
33886742 -TC-GGTCTTAGCCCGGATATATCACTCGCATATTGCC
1 TTCGGGTCTTAGCCCGGATATATCACTCGCATAATGCC
33886778 TTCGGGTC-TAG-CCGGATATAT
1 TTCGGGTCTTAGCCCGGATATAT
33886799 TCCAATGCTC
Statistics
Matches: 123, Mismatches: 6, Indels: 14
0.86 0.04 0.10
Matches are distributed among these distances:
36 43 0.35
37 7 0.06
38 17 0.14
39 28 0.23
40 26 0.21
41 2 0.02
ACGTcount: A:0.20, C:0.27, G:0.21, T:0.32
Consensus pattern (38 bp):
TTCGGGTCTTAGCCCGGATATATCACTCGCATAATGCC
Found at i:33887058 original size:1 final size:1
Alignment explanation
Indices: 33887052--33887504 Score: 906
Period size: 1 Copynumber: 453.0 Consensus size: 1
33887042 CTTAAGGCTA
33887052 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
33887117 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
33887182 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
33887247 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
33887312 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
33887377 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
33887442 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
33887505 CAAAAAAAAA
Statistics
Matches: 452, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 452 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:33887510 original size:1 final size:1
Alignment explanation
Indices: 33887506--33887682 Score: 174
Period size: 1 Copynumber: 177.0 Consensus size: 1
33887496 TTTTTTTTTC
33887506 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*** *****************
33887571 AAAAAAAAAAAAAAATTTACTTTTTCCTTCCCCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
33887636 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
33887683 TCGGGATCTA
Statistics
Matches: 167, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
1 167 1.00
ACGTcount: A:0.89, C:0.05, G:0.00, T:0.07
Consensus pattern (1 bp):
A
Found at i:33894082 original size:40 final size:40
Alignment explanation
Indices: 33894037--33894264 Score: 413
Period size: 40 Copynumber: 5.7 Consensus size: 40
33894027 GCAAACACAT
*
33894037 TTGCCTTCGGGTCTTAGCCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
33894077 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
33894117 TTGCCTTCGGGTCTTAGCCCGGATATATC-ACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
33894156 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
33894196 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
33894236 TTGCCTTCGGGTCTTAGCCCGGATATATC
1 TTGCCTTCGGGTCTTAGCCCGGATATATC
33894265 CCAATGCTCA
Statistics
Matches: 182, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
39 37 0.20
40 145 0.80
ACGTcount: A:0.21, C:0.28, G:0.21, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:33894175 original size:79 final size:80
Alignment explanation
Indices: 33894037--33894264 Score: 413
Period size: 79 Copynumber: 2.9 Consensus size: 80
33894027 GCAAACACAT
*
33894037 TTGCCTTCGGGTCTTAGCCCGGACATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
*
33894102 TATCATCTCGCATAA
66 TATCAACTCGCATAA
*
33894117 TTGCCTTCGGGTCTTAGCCCGGATATATC-ACTCGCATAATTGCCTTCGGGTCATAGCCCGGATA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
33894181 TATCAACTCGCATAA
66 TATCAACTCGCATAA
*
33894196 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
33894261 TATC
66 TATC
33894265 CCAATGCTCA
Statistics
Matches: 142, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
79 76 0.54
80 66 0.46
ACGTcount: A:0.21, C:0.28, G:0.21, T:0.30
Consensus pattern (80 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
TATCAACTCGCATAA
Found at i:33894214 original size:119 final size:119
Alignment explanation
Indices: 33894037--33894264 Score: 420
Period size: 119 Copynumber: 1.9 Consensus size: 119
33894027 GCAAACACAT
* *
33894037 TTGCCTTCGGGTCTTAGCCCGGACATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
1 TTGCCTTCGGGTCATAGCCCGGACATATCAACTCGCATAATTGCCTTCGGGTCATAGCCCGGATA
*
33894102 TATCATCTCGCATAATTGCCTTCGGGTCTTAGCCCGGATATATCACTCGCATAA
66 TATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATATATCACTCGCATAA
*
33894156 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCATAGCCCGGATA
1 TTGCCTTCGGGTCATAGCCCGGACATATCAACTCGCATAATTGCCTTCGGGTCATAGCCCGGATA
33894221 TATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATATATC
66 TATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATATATC
33894265 CCAATGCTCA
Statistics
Matches: 105, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
119 105 1.00
ACGTcount: A:0.21, C:0.28, G:0.21, T:0.30
Consensus pattern (119 bp):
TTGCCTTCGGGTCATAGCCCGGACATATCAACTCGCATAATTGCCTTCGGGTCATAGCCCGGATA
TATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATATATCACTCGCATAA
Found at i:33906396 original size:42 final size:42
Alignment explanation
Indices: 33906349--33906458 Score: 157
Period size: 42 Copynumber: 2.6 Consensus size: 42
33906339 ACAGCCAAGC
* * * *
33906349 CACACGCCCGTGTGCCAAGTCGTGTACCCTTTGAAGTAACCT
1 CACACGCCTGTGTGCCAGGCCGTGTACCCTTCGAAGTAACCT
*
33906391 CACACGCCTGTGTACCAGGCCGTGTACCCTTCGAAGTAACCT
1 CACACGCCTGTGTGCCAGGCCGTGTACCCTTCGAAGTAACCT
* *
33906433 TACACGCCTATGTGCCAGGCCGTGTA
1 CACACGCCTGTGTGCCAGGCCGTGTA
33906459 ACAGCTTGAC
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 60 1.00
ACGTcount: A:0.21, C:0.34, G:0.23, T:0.23
Consensus pattern (42 bp):
CACACGCCTGTGTGCCAGGCCGTGTACCCTTCGAAGTAACCT
Found at i:33906525 original size:15 final size:15
Alignment explanation
Indices: 33906505--33906540 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
33906495 ACACACAGCC
33906505 GTGTCACCTGGTCGT
1 GTGTCACCTGGTCGT
33906520 GTGTCA-CTGGTCGT
1 GTGTCACCTGGTCGT
*
33906534 GTTTCAC
1 GTGTCAC
33906541 ACATGGTTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 13 0.68
15 6 0.32
ACGTcount: A:0.08, C:0.25, G:0.31, T:0.36
Consensus pattern (15 bp):
GTGTCACCTGGTCGT
Found at i:33907140 original size:17 final size:17
Alignment explanation
Indices: 33907118--33907158 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
33907108 AGCTTTGACA
*
33907118 AGCTTCTAACTTGAACG
1 AGCTTCCAACTTGAACG
* *
33907135 AGCTTCCAACTTTAATG
1 AGCTTCCAACTTGAACG
33907152 AGCTTCC
1 AGCTTCC
33907159 GAATAACTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.32
Consensus pattern (17 bp):
AGCTTCCAACTTGAACG
Found at i:33907644 original size:24 final size:25
Alignment explanation
Indices: 33907592--33907644 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 25
33907582 GTACATGTAT
* *
33907592 GCTCATATGAGCTCTGAATCGGTAT
1 GCTCATATGAGCTCTAAATCGGTAA
* *
33907617 GCTCTTATGAGCTGTAAAT-GGTAA
1 GCTCATATGAGCTCTAAATCGGTAA
33907641 GCTC
1 GCTC
33907645 CTCCAAGGTG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 8 0.33
25 16 0.67
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (25 bp):
GCTCATATGAGCTCTAAATCGGTAA
Found at i:33907703 original size:25 final size:24
Alignment explanation
Indices: 33907608--33907714 Score: 72
Period size: 25 Copynumber: 4.4 Consensus size: 24
33907598 ATGAGCTCTG
* * **
33907608 AATCGGTATGCTCTTATGAGCTGTA
1 AATCGGTAAGCTCATACAAGCTG-A
* * *
33907633 AAT-GGTAAGCTCCTCCAAGGTGA
1 AATCGGTAAGCTCATACAAGCTGA
* *
33907656 ATAACGGTAAGCTCATGCAAGCTGA
1 A-ATCGGTAAGCTCATACAAGCTGA
* * *
33907681 GTATCGGTAAGCTTATACGAGCTGA
1 -AATCGGTAAGCTCATACAAGCTGA
33907706 AATCGGTAA
1 AATCGGTAA
33907715 CACTAATGAC
Statistics
Matches: 63, Mismatches: 16, Indels: 7
0.73 0.19 0.08
Matches are distributed among these distances:
23 2 0.03
24 22 0.35
25 39 0.62
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (24 bp):
AATCGGTAAGCTCATACAAGCTGA
Found at i:33910627 original size:49 final size:49
Alignment explanation
Indices: 33910571--33910808 Score: 255
Period size: 49 Copynumber: 4.8 Consensus size: 49
33910561 TAGACAAGGA
*
33910571 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
** * *
33910620 TATCTGGTACATGTAGTAGCCTGCACTTAGTACTACACACT-TGACCTAAC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA-TGCGACC-AAT
* * * * * *
33910670 TATTTGATCCACATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-T
* * *
33910721 TATCGGGTACGCATAGTAGCCTGCACTTAGTGCTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
** * *
33910770 TATCCAGTACA-AGTAGTAGCCTGCACTCAATACTACACA
1 TATCTGGTACACA-TAGTAGCCTGCACTTAGTACTACACA
33910809 CGTGACCTCA
Statistics
Matches: 155, Mismatches: 28, Indels: 12
0.79 0.14 0.06
Matches are distributed among these distances:
48 1 0.01
49 72 0.46
50 45 0.29
51 37 0.24
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:33911081 original size:27 final size:27
Alignment explanation
Indices: 33911041--33911094 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
33911031 AGGTACAACC
* *
33911041 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
33911068 CATGTAACAATAATTTGTCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
33911095 TCACATGGCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.13, G:0.07, T:0.41
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:33911424 original size:30 final size:30
Alignment explanation
Indices: 33911390--33911448 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
33911380 CCAAAATCAT
*
33911390 ACTTTGGAAAAATTACAATTTTGCCCCTAA
1 ACTTTGGAAAAAGTACAATTTTGCCCCTAA
** *
33911420 ACTTTGTCAAAAGTACATTTTTGCCCCTA
1 ACTTTGGAAAAAGTACAATTTTGCCCCTA
33911449 GGCTCGTAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.32, C:0.22, G:0.10, T:0.36
Consensus pattern (30 bp):
ACTTTGGAAAAAGTACAATTTTGCCCCTAA
Found at i:33911906 original size:16 final size:16
Alignment explanation
Indices: 33911885--33911918 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
33911875 CTAATTTGGC
33911885 TTATTTCCCTTTTTAA
1 TTATTTCCCTTTTTAA
33911901 TTATTTCCCTTTTTAA
1 TTATTTCCCTTTTTAA
33911917 TT
1 TT
33911919 CTTTTAATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.18, C:0.18, G:0.00, T:0.65
Consensus pattern (16 bp):
TTATTTCCCTTTTTAA
Found at i:33916411 original size:49 final size:49
Alignment explanation
Indices: 33916341--33916575 Score: 256
Period size: 49 Copynumber: 4.7 Consensus size: 49
33916331 TAGACAAGGC
* *
33916341 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * *
33916390 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACT-TGACCTAAC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACA-TGCGACC-AAT
* * * * * * *
33916440 CATCTGATACACATAGTAGCCTGCACTTAGTGCTACACACGTGATCGAAGT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-T
* ** *
33916491 TATCGGGTATGCATAGTAGCCTGCACTTAATACTACACATGCGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * *
33916540 TATTCGGTACACGTAGTAGCCTGCACTCAGTACTAC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTAC
33916576 CCACGTGAAC
Statistics
Matches: 151, Mismatches: 30, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
49 70 0.46
50 45 0.30
51 36 0.24
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:33916852 original size:27 final size:27
Alignment explanation
Indices: 33916812--33916865 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
33916802 AGGTACAACC
* *
33916812 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
33916839 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
33916866 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:33919206 original size:48 final size:48
Alignment explanation
Indices: 33919154--33919494 Score: 199
Period size: 48 Copynumber: 7.4 Consensus size: 48
33919144 TATCCGAAGT
33919154 ATGGTCTTA-ATTGGGATCACATATCGATGCCAACGCCATGTCCCAGAC
1 ATGGTCTTACA-TGGGATCACATATCGATGCCAACGCCATGTCCCAGAC
* *
33919202 ATGGTCTTACGTGGGATCATGCATATCGAAG-C--CG--ATAG-CCCAG-C
1 ATGGTCTTACATGGGATCA--CATATCGATGCCAACGCCAT-GTCCCAGAC
* * * * * *
33919246 TATGGTCTTACACGATGA-CTCATATTGATGCCAATGCCATGTCCTAGAC
1 -ATGGTCTTACATG-GGATCACATATCGATGCCAACGCCATGTCCCAGAC
* * * *
33919295 ATGGTCTTACATGGGATCATATTTCGATACCAATGCCATGTCCCAGAC
1 ATGGTCTTACATGGGATCACATATCGATGCCAACGCCATGTCCCAGAC
* ** *
33919343 ATGGTCTTACACGGGAT--CATA-C-ATATCAAAGCCAATAG-CCCAG-C
1 ATGGTCTTACATGGGATCACATATCGATGCCAACGCC-AT-GTCCCAGAC
* * * * *
33919387 TATGGTCTTACACGATGA-CTCATATTGAT----ACG-AATG---CAGAC
1 -ATGGTCTTACATG-GGATCACATATCGATGCCAACGCCATGTCCCAGAC
* * * *
33919428 ATGGTCTTACATGGGATCACATTTTGATACCAATGCCATGTCCCAGAC
1 ATGGTCTTACATGGGATCACATATCGATGCCAACGCCATGTCCCAGAC
33919476 ATGGTCTTACATGGGATCA
1 ATGGTCTTACATGGGATCA
33919495 TGCATATCCC
Statistics
Matches: 228, Mismatches: 33, Indels: 64
0.70 0.10 0.20
Matches are distributed among these distances:
39 2 0.01
40 24 0.11
41 1 0.00
42 1 0.00
43 10 0.04
44 14 0.06
45 45 0.20
46 9 0.04
47 9 0.04
48 100 0.44
49 4 0.02
50 9 0.04
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (48 bp):
ATGGTCTTACATGGGATCACATATCGATGCCAACGCCATGTCCCAGAC
Found at i:33919385 original size:141 final size:140
Alignment explanation
Indices: 33919131--33919502 Score: 519
Period size: 141 Copynumber: 2.7 Consensus size: 140
33919121 CACATAGTCG
* * * * *
33919131 GATGCCAATGCCATATCC-GAAGTATGGTCTTA-ATTGGGATCACATATCGATGCCAACGCCATG
1 GATGCCAATGCCATGTCCAG-A-CATGGTCTTACA-TGGGATCACATTTCGATACCAATGCCATG
* * *
33919194 TCCCAGACATGGTCTTACGTGGGATCATGCATATCGAAGCCGATAGCCCAGCTATGGTCTTACAC
63 TCCCAGACATGGTCTTACATGGGATCATGCATATCAAAGCCAATAGCCCAGCTATGGTCTTACAC
33919259 GATGACTCATATT
128 GATGACTCATATT
*
33919272 GATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATCATATTTCGATACCAATGCCATGTC
1 GATGCCAATGCCATGTCC-AGACATGGTCTTACATGGGATCACATTTCGATACCAATGCCATGTC
* *
33919337 CCAGACATGGTCTTACACGGGATCATACATATCAAAGCCAATAGCCCAGCTATGGTCTTACACGA
65 CCAGACATGGTCTTACATGGGATCATGCATATCAAAGCCAATAGCCCAGCTATGGTCTTACACGA
33919402 TGACTCATATT
130 TGACTCATATT
* * *
33919413 GAT----ACG-AATG--CAGACATGGTCTTACATGGGATCACATTTTGATACCAATGCCATGTCC
1 GATGCCAATGCCATGTCCAGACATGGTCTTACATGGGATCACATTTCGATACCAATGCCATGTCC
33919471 CAGACATGGTCTTACATGGGATCATGCATATC
66 CAGACATGGTCTTACATGGGATCATGCATATC
33919503 CCTAACGTTA
Statistics
Matches: 211, Mismatches: 17, Indels: 14
0.87 0.07 0.06
Matches are distributed among these distances:
133 75 0.36
134 1 0.00
136 3 0.01
137 2 0.01
141 127 0.60
142 2 0.01
143 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.27
Consensus pattern (140 bp):
GATGCCAATGCCATGTCCAGACATGGTCTTACATGGGATCACATTTCGATACCAATGCCATGTCC
CAGACATGGTCTTACATGGGATCATGCATATCAAAGCCAATAGCCCAGCTATGGTCTTACACGAT
GACTCATATT
Found at i:33926781 original size:48 final size:48
Alignment explanation
Indices: 33926541--33926782 Score: 180
Period size: 48 Copynumber: 5.1 Consensus size: 48
33926531 GAAATCACAT
* ** **
33926541 TCACATAGTCTGATGCCAATGCCAAATCCCAGGTATGGTCTTACATAGGA
1 TCACATA-T-TGATACCAATGCCATGTCCCAGACATGGTCTTACATAGGA
* * *
33926591 TTACATATTGATACTAATGCCATGTCCTAGACATGGTCTTACATAGGA
1 TCACATATTGATACCAATGCCATGTCCCAGACATGGTCTTACATAGGA
* *
33926639 TCATGCATATCGA-AGCCGAT---A-G-CCCAG-CTATGGTCTTAC--AGGA
1 TCA--CATATTGATA-CCAATGCCATGTCCCAGAC-ATGGTCTTACATAGGA
* * * * * *
33926682 TAACTCATATTGATGCCAATGTCATATCTCAGACATGGTCTTACATGGGA
1 T--CACATATTGATACCAATGCCATGTCCCAGACATGGTCTTACATAGGA
*
33926732 TCACAT-TTCGATACCAATGCCATGTCCCAGACATGGTCTTACATGGGA
1 TCACATATT-GATACCAATGCCATGTCCCAGACATGGTCTTACATAGGA
33926780 TCA
1 TCA
33926783 TGCATATCCC
Statistics
Matches: 151, Mismatches: 25, Indels: 34
0.72 0.12 0.16
Matches are distributed among these distances:
43 16 0.11
44 1 0.01
45 15 0.10
46 2 0.01
47 3 0.02
48 91 0.60
49 3 0.02
50 20 0.13
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (48 bp):
TCACATATTGATACCAATGCCATGTCCCAGACATGGTCTTACATAGGA
Found at i:33927171 original size:30 final size:30
Alignment explanation
Indices: 33927127--33927185 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
33927117 CATAAATCAT
* * *
33927127 ACTTTGACAAAATTATAATTTTGCCCTTAA
1 ACTTTCACAAAATTACAAATTTGCCCTTAA
* *
33927157 ACTTTCACATAATTACAAATTTGTCCTTA
1 ACTTTCACAAAATTACAAATTTGCCCTTA
33927186 GGCTAGTAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.36, C:0.19, G:0.05, T:0.41
Consensus pattern (30 bp):
ACTTTCACAAAATTACAAATTTGCCCTTAA
Found at i:33934249 original size:35 final size:35
Alignment explanation
Indices: 33934203--33934332 Score: 154
Period size: 35 Copynumber: 3.7 Consensus size: 35
33934193 ATAGAATTTT
* *
33934203 TAGTAGGCATGCTTTACATGTGAATTAGAATTAGTA
1 TAGT-GGCATGCTTAACATGCGAATTAGAATTAGTA
* * * *
33934239 CAGTGGCATGCTTAACATGCGAA-TCGTATTTAATA
1 TAGTGGCATGCTTAACATGCGAATTAG-AATTAGTA
* *
33934274 TAGTGGCATGCTTAACATGCGAATCAAAATTAGTA
1 TAGTGGCATGCTTAACATGCGAATTAGAATTAGTA
*
33934309 TAGTGGAATGCTTAACATGCGAAT
1 TAGTGGCATGCTTAACATGCGAAT
33934333 AAGATTATCA
Statistics
Matches: 79, Mismatches: 13, Indels: 5
0.81 0.13 0.05
Matches are distributed among these distances:
34 2 0.03
35 74 0.94
36 3 0.04
ACGTcount: A:0.34, C:0.13, G:0.22, T:0.32
Consensus pattern (35 bp):
TAGTGGCATGCTTAACATGCGAATTAGAATTAGTA
Found at i:33941195 original size:7 final size:7
Alignment explanation
Indices: 33941163--33941205 Score: 50
Period size: 7 Copynumber: 5.6 Consensus size: 7
33941153 GGATTTATAA
33941163 AAAATAT
1 AAAATAT
33941170 AAACATATTT
1 AAA-ATA--T
33941180 AATAATAT
1 AA-AATAT
33941188 AAAATAT
1 AAAATAT
33941195 AAAATAT
1 AAAATAT
33941202 AAAA
1 AAAA
33941206 AAATATATAT
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
7 19 0.59
8 6 0.19
10 6 0.19
11 1 0.03
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.30
Consensus pattern (7 bp):
AAAATAT
Found at i:33963356 original size:42 final size:42
Alignment explanation
Indices: 33963308--33963413 Score: 135
Period size: 42 Copynumber: 2.5 Consensus size: 42
33963298 TTAGGGTTAC
*
33963308 TAAGACTAT-GTATAAGACCATATCTAGGATATGACATCTATA
1 TAAGACT-TCGTATAAGACCATATCTAGGATATGACATCGATA
* * * *
33963350 TAAGACTTCGTGTAAAACCATATCTGGGATATGGCATCGATA
1 TAAGACTTCGTATAAGACCATATCTAGGATATGACATCGATA
33963392 TGAA-ACTTCGTATAAGACCATA
1 T-AAGACTTCGTATAAGACCATA
33963414 GCTTGACTAT
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
41 1 0.02
42 52 0.95
43 2 0.04
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.29
Consensus pattern (42 bp):
TAAGACTTCGTATAAGACCATATCTAGGATATGACATCGATA
Found at i:33968925 original size:80 final size:79
Alignment explanation
Indices: 33968792--33968966 Score: 239
Period size: 80 Copynumber: 2.2 Consensus size: 79
33968782 ATGATAACTG
* * * *
33968792 GGCTAAGTCCCGAAGGCATTTTTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGC
1 GGCTAAGTCCCGAAGGCATTTGTGCAACTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGAGC
33968857 GAGTTA-CTATATCC
66 GAG-TAGCTATATCC
33968871 AGGCTAAGTCCCGAAGGCATTTGTGCGAACT-ACTATATT-CGGGCTAAGTCCCGAAGGCATTTG
1 -GGCTAAGTCCCGAAGGCATTTGTGC-AACTGACTA-ATTCCGGGCTAAGTCCCGAAGGCATTTG
33968934 AGCGAGTAGCTATATCC
63 AGCGAGTAGCTATATCC
* *
33968951 GGTTAAATCCCGAAGG
1 GGCTAAGTCCCGAAGG
33968967 TACTTGGTTT
Statistics
Matches: 86, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
79 16 0.19
80 65 0.76
81 5 0.06
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (79 bp):
GGCTAAGTCCCGAAGGCATTTGTGCAACTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGAGC
GAGTAGCTATATCC
Found at i:33968947 original size:40 final size:39
Alignment explanation
Indices: 33968791--33968966 Score: 212
Period size: 40 Copynumber: 4.4 Consensus size: 39
33968781 GATGATAACT
* *
33968791 GGGCTAAGTCCCGAAGGCATTTTTGCTAGTGACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATATT-C
*
33968831 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATTC
* *
33968871 AGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCG-AGTACTATATTC
*
33968911 GGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATA-TC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTATATTC
* * *
33968950 CGGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
33968967 TACTTGGTTT
Statistics
Matches: 120, Mismatches: 12, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
39 19 0.16
40 97 0.81
41 4 0.03
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATATTC
Found at i:33973718 original size:99 final size:99
Alignment explanation
Indices: 33973527--33973727 Score: 262
Period size: 99 Copynumber: 2.0 Consensus size: 99
33973517 TATGTAGCCA
* * * *
33973527 AACTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 AACTATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACA
*
33973592 TAGTAGCTTGCACTTAGTACTACACACA-CAACCT
66 TAGTAGCCTGCACTTAGTACTA-ACACAGCAACCT
* * * * *
33973626 AACTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACG
1 AACTATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCGGTACA
33973691 CATAGTAGCCTGCACTTAGTACT-ACACATGCAACCT
64 CATAGTAGCCTGCACTTAGTACTAACACA-GCAACCT
33973727 A
1 A
33973728 GCTACATATA
Statistics
Matches: 88, Mismatches: 10, Indels: 6
0.85 0.10 0.06
Matches are distributed among these distances:
99 47 0.53
100 3 0.03
101 38 0.43
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.25
Consensus pattern (99 bp):
AACTATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACA
TAGTAGCCTGCACTTAGTACTAACACAGCAACCT
Found at i:33973745 original size:101 final size:99
Alignment explanation
Indices: 33973527--33973727 Score: 276
Period size: 101 Copynumber: 2.0 Consensus size: 99
33973517 TATGTAGCCA
* * * * *
33973527 AACTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 AACTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACA
*
33973592 TAGTAGCTTGCACTTAGTACTACACACACAACCT
66 TAGTAGCCTGCACTTAGTACTACACACACAACCT
* * * *
33973626 AACTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACG
1 AACTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCGGTACA
**
33973691 CATAGTAGCCTGCACTTAGTACTACACATGCAACCT
64 CATAGTAGCCTGCACTTAGTACTACACACACAACCT
33973727 A
1 A
33973728 GCTACATATA
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
99 42 0.48
100 3 0.03
101 43 0.49
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.25
Consensus pattern (99 bp):
AACTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACA
TAGTAGCCTGCACTTAGTACTACACACACAACCT
Found at i:33974569 original size:30 final size:30
Alignment explanation
Indices: 33974533--33974593 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
33974523 TCCTTAACTC
33974533 AAACTTTGGAAAATTTACAATTTTGCCCCT
1 AAACTTTGGAAAATTTACAATTTTGCCCCT
* * * * *
33974563 AAACTTTTGCATATTTACACTTTTTCCCCT
1 AAACTTTGGAAAATTTACAATTTTGCCCCT
33974593 A
1 A
33974594 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.41
Consensus pattern (30 bp):
AAACTTTGGAAAATTTACAATTTTGCCCCT
Found at i:33977624 original size:42 final size:42
Alignment explanation
Indices: 33977578--33977732 Score: 141
Period size: 42 Copynumber: 3.7 Consensus size: 42
33977568 CTATGACTAT
* * *
33977578 GTGTAAGACTATATCTGGGATATGGCATCTATATGAGACTTC
1 GTGTAAGACCATATCTGGGATATGGCATCAATAGGAGACTTC
*
33977620 GTGTAAGACCATATCTGGGATATGGCATCAATAGGATACTTC
1 GTGTAAGACCATATCTGGGATATGGCATCAATAGGAGACTTC
* * * * * * ** * *
33977662 ATGTAAGGCCATAACTTGGCTATTGGAATTGATACGAGA-TCCC
1 GTGTAAGACCATATCTGGGATA-TGGCATCAATAGGAGACT-TC
* *
33977705 ATGTAAGGCCATATCTGGGATATGGCAT
1 GTGTAAGACCATATCTGGGATATGGCAT
33977733 TGGTATGGTA
Statistics
Matches: 92, Mismatches: 19, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
42 61 0.66
43 31 0.34
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATATGGCATCAATAGGAGACTTC
Found at i:33979370 original size:28 final size:28
Alignment explanation
Indices: 33979307--33979516 Score: 332
Period size: 28 Copynumber: 7.5 Consensus size: 28
33979297 ATATTAAGTC
* *
33979307 CGCACACTCAGTGTTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
33979334 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
33979362 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
33979390 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
33979418 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
33979446 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
33979474 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
33979503 CGCACACTTAGTGC
1 CGCACACTTAGTGC
33979517 CAATCTCATG
Statistics
Matches: 171, Mismatches: 10, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
27 21 0.12
28 131 0.77
29 19 0.11
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:33986483 original size:44 final size:44
Alignment explanation
Indices: 33986418--33986501 Score: 98
Period size: 44 Copynumber: 1.9 Consensus size: 44
33986408 TTGATATGTC
* * *
33986418 AAAGTCCATGGTTGTACCATGGAAATTATGGAAGAATTGATGGG
1 AAAGTCCATGGTTATAACATGGAAATTAAGGAAGAATTGATGGG
* * *
33986462 AAAGTCCAT-GTTCATAACATGGCATTTAAGGAGGAATTGA
1 AAAGTCCATGGTT-ATAACATGGAAATTAAGGAAGAATTGA
33986502 CAGTTAAGGA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
43 3 0.09
44 30 0.91
ACGTcount: A:0.36, C:0.11, G:0.26, T:0.27
Consensus pattern (44 bp):
AAAGTCCATGGTTATAACATGGAAATTAAGGAAGAATTGATGGG
Found at i:33986699 original size:47 final size:47
Alignment explanation
Indices: 33986641--33986759 Score: 211
Period size: 47 Copynumber: 2.5 Consensus size: 47
33986631 GCATTGGCAC
*
33986641 TAAGACAAGGATACCATGTAAGGCCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
*
33986688 TAAGACAAGGATACAATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
*
33986735 TAAGACAAGGATATCATGTAAGACC
1 TAAGACAAGGATACCATGTAAGACC
33986760 TTGCCAAGGC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.24
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:33986833 original size:55 final size:53
Alignment explanation
Indices: 33986735--33986883 Score: 192
Period size: 55 Copynumber: 2.8 Consensus size: 53
33986725 TGGCATTTGG
* * * *
33986735 TAAGACAAGGATATCATGTAAGACCTTGCCAAGGCATGGCATTGATGAGTTACTA
1 TAAGGCAAGGATACCATGTAAGACCATGTCAAGGCATGGCATTGATGAGTT-C-A
* *
33986790 TAAGGCAAAGG-TCCCATGTAAGACCATGTCAAGGCATGGCATTGGTGAGTTCA
1 TAAGGC-AAGGATACCATGTAAGACCATGTCAAGGCATGGCATTGATGAGTTCA
* *
33986843 TAAGGCAAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 TAAGGCAAGGATACCATGTAAGACCATGTCAAGGCATGGCA
33986884 ATGGTAAGTT
Statistics
Matches: 83, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
52 4 0.05
53 34 0.41
54 1 0.01
55 40 0.48
56 4 0.05
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (53 bp):
TAAGGCAAGGATACCATGTAAGACCATGTCAAGGCATGGCATTGATGAGTTCA
Found at i:33986869 original size:53 final size:53
Alignment explanation
Indices: 33986735--33986895 Score: 198
Period size: 53 Copynumber: 3.0 Consensus size: 53
33986725 TGGCATTTGG
* * * * *
33986735 TAAGACAAGGATATCATGTAAGACCTTGCCAAGGCATGGCATTGATGAGTTACTA
1 TAAGGCAAGGATACCATGTAAGACCATGTCAAGGCATGGCATTGGTGAGTT-C-A
*
33986790 TAAGGCAAAGG-TCCCATGTAAGACCATGTCAAGGCATGGCATTGGTGAGTTCA
1 TAAGGC-AAGGATACCATGTAAGACCATGTCAAGGCATGGCATTGGTGAGTTCA
* * * *
33986843 TAAGGCAAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCA
1 TAAGGCAAGGATACCATGTAAGACCATGTCAAGGCATGGCATTGGTGAGTTCA
33986896 AAAAAGAAAA
Statistics
Matches: 93, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
52 4 0.04
53 44 0.47
54 1 0.01
55 40 0.43
56 4 0.04
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.22
Consensus pattern (53 bp):
TAAGGCAAGGATACCATGTAAGACCATGTCAAGGCATGGCATTGGTGAGTTCA
Found at i:33993731 original size:47 final size:47
Alignment explanation
Indices: 33993673--33994262 Score: 910
Period size: 47 Copynumber: 12.5 Consensus size: 47
33993663 ATTCAGCCAA
*
33993673 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
*
33993720 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* *
33993767 GAAAGTGTATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
33993814 GAAAGTGTATATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATA--TGTGATAAGGCCTAATAGCCGATGTGATGAATGT
*
33993863 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* *
33993910 GAAAGTGTATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
*
33993957 GAAAGAGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 G-AA-AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* *
33994006 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGG
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
*
33994053 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* * *
33994100 GAAAGTGTATATATGTAATAAAGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* *
33994147 GAAAGTGTATATATGTGATAAGGCCTAGTGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* * * * * * * *
33994194 GAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* *
33994241 GAAAGTGCATAAATGTGATAAG
1 GAAAGTGTATATATGTGATAAG
33994263 TCCCGAAGGG
Statistics
Matches: 504, Mismatches: 35, Indels: 8
0.92 0.06 0.01
Matches are distributed among these distances:
47 414 0.82
48 4 0.01
49 86 0.17
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
Found at i:33993850 original size:143 final size:142
Alignment explanation
Indices: 33993673--33994262 Score: 943
Period size: 143 Copynumber: 4.2 Consensus size: 142
33993663 ATTCAGCCAA
*
33993673 GAAAGTGTATATA-TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTG
1 GAAAGTGTATATATTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTG
*
33993737 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGTCGA
66 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
33993802 TGTGATGAATGT
131 TGTGATGAATGT
33993814 GAAAGTGTATATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGT
1 GAAAGTGTATATAT-TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGT
*
33993879 GATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGTCG
65 GATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
33993944 ATGTGATGAATGT
130 ATGTGATGAATGT
*
33993957 GAAAGAGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGT
1 GAAAGTGTATATAT-TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGT
* * *
33994022 GATAAGGCCTAATAGCCGATGTGATGAATGGGAAAGTGTATATGTGTGATAAGGCCTAATAGCCG
65 GATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
33994087 ATGTGATGAATGT
130 ATGTGATGAATGT
* * * *
33994100 GAAAGTGTATATA-TGTAATAAAGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 GAAAGTGTATATATTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTG
* * * * * * *
33994164 ATAAGGCCTAGTGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAA
66 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
* *
33994229 CGTGATGGATGT
131 TGTGATGAATGT
* *
33994241 GAAAGTGCATA-AATGTGATAAG
1 GAAAGTGTATATATTGTGATAAG
33994263 TCCCGAAGGG
Statistics
Matches: 419, Mismatches: 27, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
140 1 0.00
141 142 0.34
143 276 0.66
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (142 bp):
GAAAGTGTATATATTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTG
ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
TGTGATGAATGT
Found at i:33994437 original size:37 final size:37
Alignment explanation
Indices: 33994384--33994459 Score: 109
Period size: 37 Copynumber: 2.1 Consensus size: 37
33994374 AGCTCTAAAC
* *
33994384 ACCCGATGACTACGTGTGG-GAATTTTGTCCGGGTAAG
1 ACCCGATAACTACGTGTGGAG-ATTATGTCCGGGTAAG
*
33994421 ACCCGATAACTTCGTGTGGAGATTATGTCCGGGTAAG
1 ACCCGATAACTACGTGTGGAGATTATGTCCGGGTAAG
33994458 AC
1 AC
33994460 TTCGTAATAA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
37 34 0.97
38 1 0.03
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (37 bp):
ACCCGATAACTACGTGTGGAGATTATGTCCGGGTAAG
Found at i:33996675 original size:2 final size:2
Alignment explanation
Indices: 33996670--33996718 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
33996660 AATATATATA
33996670 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
33996712 TG TG TG T
1 TG TG TG T
33996719 AATGTGATGT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:34000569 original size:40 final size:40
Alignment explanation
Indices: 34000490--34000666 Score: 198
Period size: 40 Copynumber: 4.5 Consensus size: 40
34000480 CGGATGATAA
* * * * *
34000490 CCGGACTAAGATCTGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * *
34000530 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
* *
34000570 CCGGGCTAAGACCCGAAAGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
34000610 TCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
34000650 -CTGGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
34000667 ATACTTGGGT
Statistics
Matches: 115, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
38 1 0.01
39 16 0.14
40 96 0.83
41 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:34000934 original size:22 final size:22
Alignment explanation
Indices: 34000894--34000935 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
34000884 GAATGTGCAT
*
34000894 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
34000916 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
34000936 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:34008072 original size:40 final size:40
Alignment explanation
Indices: 34007993--34008160 Score: 214
Period size: 40 Copynumber: 4.2 Consensus size: 40
34007983 CGGATGATAA
* * * *
34007993 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * *
34008033 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
* * *
34008073 CCGGGCTAAGACCTGAAGGAATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
34008113 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
34008153 CC-GGCTAA
1 CCGGGCTAA
34008161 ATCCCGGAGA
Statistics
Matches: 108, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
39 8 0.07
40 98 0.91
41 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:34008437 original size:22 final size:22
Alignment explanation
Indices: 34008397--34008438 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
34008387 GAATGTGCAT
*
34008397 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
34008419 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
34008439 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:34028453 original size:39 final size:39
Alignment explanation
Indices: 34028399--34028694 Score: 443
Period size: 39 Copynumber: 7.5 Consensus size: 39
34028389 TAATGGAGAA
34028399 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * * *
34028438 TTATATTCAGGCTAAGTCTCGAAGGCATTCGTGCTAGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
34028477 TTATATCCGGGCTAAGTTCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
34028516 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
34028555 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
34028594 TTATATCCGGGCTAAAGTCCCGTAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
* * *
34028633 TTATATCCGGGCTAAAGTCCCGTAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
34028672 TTATATCCGGGCTTAAAGTCCCG
1 TTATATCCGGGC-T-AAGTCCCG
34028695 CATGCTTTGT
Statistics
Matches: 242, Mismatches: 13, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
39 220 0.91
40 22 0.09
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.31
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:34034622 original size:25 final size:26
Alignment explanation
Indices: 34034588--34034641 Score: 74
Period size: 25 Copynumber: 2.1 Consensus size: 26
34034578 GTGGGGGATT
*
34034588 TTTATGTAATATTAATATAATTA-TA
1 TTTATGTAATATTAATATAAATATTA
* *
34034613 TTTATTTAATATTACTATAAATATTA
1 TTTATGTAATATTAATATAAATATTA
34034639 TTT
1 TTT
34034642 TAAAATTTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
25 20 0.80
26 5 0.20
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (26 bp):
TTTATGTAATATTAATATAAATATTA
Found at i:34036810 original size:14 final size:14
Alignment explanation
Indices: 34036791--34036817 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
34036781 AATTTGACAA
34036791 GTTGAGGAGTAAGG
1 GTTGAGGAGTAAGG
34036805 GTTGAGGAGTAAG
1 GTTGAGGAGTAAG
34036818 CTTGAAGTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.00, G:0.48, T:0.22
Consensus pattern (14 bp):
GTTGAGGAGTAAGG
Found at i:34047539 original size:91 final size:90
Alignment explanation
Indices: 34047384--34047590 Score: 227
Period size: 91 Copynumber: 2.3 Consensus size: 90
34047374 CGGACACTCT
* * * * * **
34047384 AGTTTGTAGATGAACCACTAGTGTTTGTTGGTTAATATATTGCCAGTAGCTTGTGAATGCACAAC
1 AGTTTGTGGATGAACCACCAATGTTTGTAGGTTAATACATTGCCAGTAGCTTGTGAAAACACAAC
*
34047449 ACATTTGCATATAAAAGCTGCCTA-TA
66 ACATTTG-AAATAAAAGCTGCC-ACTA
* * * *
34047475 AGTTTGTGGATGAACTACCAATTTTTGTAGGTTAATACATTGCTAGTAGGTTGTGAAAACACAAC
1 AGTTTGTGGATGAACCACCAATGTTTGTAGGTTAATACATTGCCAGTAGCTTGTGAAAACACAAC
** *
34047540 GTATTTGAAATAAAAGTTGCCACTA
66 ACATTTGAAATAAAAGCTGCCACTA
* * *
34047565 AATTTGTGGATAAACCACCAGTGTTT
1 AGTTTGTGGATGAACCACCAATGTTT
34047591 ACAGTTTGTT
Statistics
Matches: 95, Mismatches: 20, Indels: 3
0.81 0.17 0.03
Matches are distributed among these distances:
89 1 0.01
90 35 0.37
91 59 0.62
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.34
Consensus pattern (90 bp):
AGTTTGTGGATGAACCACCAATGTTTGTAGGTTAATACATTGCCAGTAGCTTGTGAAAACACAAC
ACATTTGAAATAAAAGCTGCCACTA
Found at i:34047729 original size:38 final size:39
Alignment explanation
Indices: 34047682--34047785 Score: 131
Period size: 38 Copynumber: 2.7 Consensus size: 39
34047672 GTATAGAAAT
*
34047682 AGTAAACATGCTTAACATGTATTCGGTTT-AACAGTAAC
1 AGTAGACATGCTTAACATGTATTCGGTTTCAACAGTAAC
* *
34047720 AGTAGACATGCTTATCATGTATTC-ATTTCAACAGTAAC
1 AGTAGACATGCTTAACATGTATTCGGTTTCAACAGTAAC
* * * *
34047758 AATAGGCATGTTTAATATGTATTCGGTT
1 AGTAGACATGCTTAACATGTATTCGGTT
34047786 CAATAGTGAT
Statistics
Matches: 55, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
37 3 0.05
38 50 0.91
39 2 0.04
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36
Consensus pattern (39 bp):
AGTAGACATGCTTAACATGTATTCGGTTTCAACAGTAAC
Found at i:34052584 original size:39 final size:39
Alignment explanation
Indices: 34052504--34052694 Score: 178
Period size: 39 Copynumber: 4.9 Consensus size: 39
34052494 CCGGGCTAAT
* *
34052504 CCGAAGGCATTTATGCTA-TGA-TTTATCCGAGCTAAG-T
1 CCGAAGGCATTTGTGCTAGTGATTTTATCCG-GCTAAGAC
*
34052541 CCGAAGGCATTTATGCTAGTGATTTTATCCGGCTAAGAC
1 CCGAAGGCATTTGTGCTAGTGATTTTATCCGGCTAAGAC
* * *
34052580 CCGAAGGCATTTGTGCGAGTTGA-TATATCTGGGCTAAGAC
1 CCGAAGGCATTTGTGCTAG-TGATTTTATC-CGGCTAAGAC
* * *
34052620 CCGAAGGCATTTGTGCGAGT--TTTATACCCGGGTTAAGAC
1 CCGAAGGCATTTGTGCTAGTGATTT-TATCC-GGCTAAGAC
* * * *
34052659 CCGAAGGCAATTGTGCTTGTGGTTATATCCGGCTAA
1 CCGAAGGCATTTGTGCTAGTGATTTTATCCGGCTAA
34052695 ATTTCGAAGA
Statistics
Matches: 129, Mismatches: 15, Indels: 18
0.80 0.09 0.11
Matches are distributed among these distances:
37 18 0.14
38 10 0.08
39 64 0.50
40 35 0.27
41 2 0.02
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCTAGTGATTTTATCCGGCTAAGAC
Found at i:34054318 original size:38 final size:38
Alignment explanation
Indices: 34054273--34054386 Score: 138
Period size: 38 Copynumber: 3.0 Consensus size: 38
34054263 TCAGTATAGA
* *
34054273 AATAGTAGACATGCTTAACATGTATTCAGTTTAACAAT
1 AATAGTAGACATGTTTAACATGTATTCAGTTCAACAAT
* *
34054311 AATAGTAGATATGTTTATCATGTATTCAGTTCAACAAT
1 AATAGTAGACATGTTTAACATGTATTCAGTTCAACAAT
* * * * **
34054349 AACAATAGGCACGTTTAACATGTATTTGGTTCAACAAT
1 AATAGTAGACATGTTTAACATGTATTCAGTTCAACAAT
34054387 GATGGTAGGC
Statistics
Matches: 64, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 64 1.00
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35
Consensus pattern (38 bp):
AATAGTAGACATGTTTAACATGTATTCAGTTCAACAAT
Found at i:34074272 original size:25 final size:26
Alignment explanation
Indices: 34074229--34074282 Score: 74
Period size: 25 Copynumber: 2.1 Consensus size: 26
34074219 TTAAATTTTA
*
34074229 AAATAATATTTATAGTAATATTAAAT
1 AAATAATAATTATAGTAATATTAAAT
* *
34074255 AAAT-ATAATTATATTAATATTACAT
1 AAATAATAATTATAGTAATATTAAAT
34074280 AAA
1 AAA
34074283 AATCCCCCAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
25 21 0.84
26 4 0.16
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (26 bp):
AAATAATAATTATAGTAATATTAAAT
Found at i:34080246 original size:39 final size:39
Alignment explanation
Indices: 34080182--34080477 Score: 443
Period size: 39 Copynumber: 7.5 Consensus size: 39
34080172 ACAAAGCATG
* * *
34080182 CGGGACTTTAAGCCCGGATATAATACCAGCAC-AAAGCCTA
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
* * *
34080222 CGGGACTTTAGCCCGGATATAATACCAGCAC-AAAGCCTA
1 CGGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTT
34080261 CGGGACTTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTT
34080301 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
34080340 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
34080379 CGGAACTTAGCCCGGATATAACACTAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* * *
34080418 CGAGACTTAGCCTGAATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
34080457 CGGGACTTAGCCCGGATATAA
1 CGGGACTTAGCCCGGATATAA
34080478 TTCTCCATTA
Statistics
Matches: 242, Mismatches: 13, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
39 221 0.91
40 21 0.09
ACGTcount: A:0.31, C:0.29, G:0.22, T:0.19
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:34083150 original size:52 final size:51
Alignment explanation
Indices: 34083036--34083212 Score: 243
Period size: 52 Copynumber: 3.5 Consensus size: 51
34083026 CGGATACCCG
* * * * *
34083036 GTGGCCTGCACATGGTACCACCCTTGT-ATCCAAAGCTACCTTCTTCACCAA
1 GTGGCCTTCACATAGTACCACACTTGTGA-CCAAAGCTATCTTCTTCACAAA
*
34083087 GTGGCCTTCACATAGTACCACACTTGTGACCAAAACTATCTTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATC-TTCTTCACAAA
* *
34083139 GTGGCCTTCACATAGTACCACACTTGTGTCC-AAGCTATC-TCTTCTCAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTCTTCACAAA
34083188 GTGGCCTTCACATAGTACCACACTT
1 GTGGCCTTCACATAGTACCACACTT
34083213 AAGGCACTAG
Statistics
Matches: 115, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
49 34 0.30
51 40 0.35
52 41 0.36
ACGTcount: A:0.26, C:0.32, G:0.14, T:0.28
Consensus pattern (51 bp):
GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTCTTCACAAA
Found at i:34083201 original size:49 final size:51
Alignment explanation
Indices: 34083036--34083212 Score: 250
Period size: 51 Copynumber: 3.5 Consensus size: 51
34083026 CGGATACCCG
* * * * * *
34083036 GTGGCCTGCACATGGTACCACCCTTGTATCCAAAGCTACCTTCTTCACCAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATCTTCTTCACAAA
* *
34083087 GTGGCCTTCACATAGTACCACACTTGTGACCAAAACTATCTTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATC-TTCTTCACAAA
*
34083139 GTGGCCTTCACATAGTACCACACTTGTGTCC-AAGCTATC-TCTTCTCAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATCTTCTTCACAAA
34083188 GTGGCCTTCACATAGTACCACACTT
1 GTGGCCTTCACATAGTACCACACTT
34083213 AAGGCACTAG
Statistics
Matches: 114, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
49 34 0.30
51 40 0.35
52 40 0.35
ACGTcount: A:0.26, C:0.32, G:0.14, T:0.28
Consensus pattern (51 bp):
GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATCTTCTTCACAAA
Found at i:34088349 original size:26 final size:26
Alignment explanation
Indices: 34088320--34088427 Score: 155
Period size: 26 Copynumber: 4.2 Consensus size: 26
34088310 TTATACAAAT
* *
34088320 TGATAATGGGTTAGGCAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
34088346 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
34088372 TGATAATGAGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
34088398 TGATAAT-GGTCTAGGTAAATGTTCCA
1 TGATAATGGGT-TAGGTAAATATTCCA
34088424 TGAT
1 TGAT
34088428 GGGCATTTCA
Statistics
Matches: 74, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
25 2 0.03
26 72 0.97
ACGTcount: A:0.34, C:0.09, G:0.22, T:0.34
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATATTCCA
Found at i:34095224 original size:26 final size:26
Alignment explanation
Indices: 34095195--34095302 Score: 144
Period size: 26 Copynumber: 4.2 Consensus size: 26
34095185 TTATACAAAT
*
34095195 TGATAATGGGTTAGGCAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
34095221 TGATAATGGATTAGGTAAATATCCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
34095247 TAATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
34095273 TGATAATGGTTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
34095299 TGAT
1 TGAT
34095303 GGGCATTTCA
Statistics
Matches: 71, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 71 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:34098966 original size:51 final size:50
Alignment explanation
Indices: 34098889--34099066 Score: 214
Period size: 52 Copynumber: 3.5 Consensus size: 50
34098879 CGAATACCCG
* *
34098889 GTGGCCTGCACATAGTACCACCCTTGTAGTCAAAGCTACCTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGT-GTCAAAGCTACCTTCTTCACAAA
* * * * *
34098940 GTGGCTTTTACGTAGTACCACACTTGTGATCAAAGATATCTTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTG-TCAAAGCTA-CCTTCTTCACAAA
* * * *
34098992 GTGGCCTTCACATAGTACCACACTTGTGACCAAGCTATC-TCTTCTCAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCAAAGCTACCTTCTTCACAAA
*
34099041 ATGGCCTTCACATAGTACCACACTTG
1 GTGGCCTTCACATAGTACCACACTTG
34099067 AGGCACTAGT
Statistics
Matches: 108, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
49 34 0.31
50 1 0.01
51 36 0.33
52 37 0.34
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29
Consensus pattern (50 bp):
GTGGCCTTCACATAGTACCACACTTGTGTCAAAGCTACCTTCTTCACAAA
Found at i:34099008 original size:52 final size:52
Alignment explanation
Indices: 34098889--34099066 Score: 224
Period size: 51 Copynumber: 3.5 Consensus size: 52
34098879 CGAATACCCG
* * *
34098889 GTGGCCTGCACATAGTACCACCCTTGT-AGTCAAAGCTA-CCTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGA-TCAAAGCTATCTTTCTTCACAAA
* * * *
34098940 GTGGCTTTTACGTAGTACCACACTTGTGATCAAAGATATCTTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGATCAAAGCTATCTTTCTTCACAAA
*
34098992 GTGGCCTTCACATAGTACCACACTTGTGA-CCAAGCTATCTCTTC-TCA-AAA
1 GTGGCCTTCACATAGTACCACACTTGTGATCAAAGCTATCT-TTCTTCACAAA
34099042 -TGGCCTTCACATAGTACCACACTTG
1 GTGGCCTTCACATAGTACCACACTTG
34099067 AGGCACTAGT
Statistics
Matches: 112, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
49 25 0.22
50 3 0.03
51 42 0.38
52 42 0.38
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29
Consensus pattern (52 bp):
GTGGCCTTCACATAGTACCACACTTGTGATCAAAGCTATCTTTCTTCACAAA
Found at i:34100323 original size:44 final size:44
Alignment explanation
Indices: 34100261--34100371 Score: 186
Period size: 44 Copynumber: 2.5 Consensus size: 44
34100251 ATATGTACCT
34100261 ATACCATGGCCAGAAGCCAAATCAAGGTAGCTTATCCGAAATCTG
1 ATACCATGGCCA-AAGCCAAATCAAGGTAGCTTATCCGAAATCTG
* *
34100306 ATATCATGGCCAAAGCCAAATCAAGGTAGCTTATTCGAAATCTG
1 ATACCATGGCCAAAGCCAAATCAAGGTAGCTTATCCGAAATCTG
34100350 ATACCATGGCCCAAAGCCAAAT
1 ATACCATGG-CCAAAGCCAAAT
34100372 TAGTTGATAT
Statistics
Matches: 62, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
44 39 0.63
45 23 0.37
ACGTcount: A:0.37, C:0.24, G:0.18, T:0.21
Consensus pattern (44 bp):
ATACCATGGCCAAAGCCAAATCAAGGTAGCTTATCCGAAATCTG
Found at i:34112102 original size:18 final size:19
Alignment explanation
Indices: 34112076--34112115 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
34112066 ATATTTCTAT
*
34112076 TTATTTTTAATATTAT-AA
1 TTATATTTAATATTATCAA
34112094 TTATATTTAATATTATCAA
1 TTATATTTAATATTATCAA
34112113 TTA
1 TTA
34112116 ATTATATTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 15 0.75
19 5 0.25
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (19 bp):
TTATATTTAATATTATCAA
Found at i:34114323 original size:6 final size:6
Alignment explanation
Indices: 34114312--34114347 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
34114302 CCCCTAACTC
* *
34114312 TCACCA TTACCA TCACCA TCGCCA TCACCA TCACCA
1 TCACCA TCACCA TCACCA TCACCA TCACCA TCACCA
34114348 ACAACTTAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.31, C:0.47, G:0.03, T:0.19
Consensus pattern (6 bp):
TCACCA
Found at i:34115925 original size:43 final size:43
Alignment explanation
Indices: 34115864--34115953 Score: 180
Period size: 43 Copynumber: 2.1 Consensus size: 43
34115854 TAATTAGTAC
34115864 ACGTCTGATTTGTAGGTTGACAAATGACAATAATCTCACTATG
1 ACGTCTGATTTGTAGGTTGACAAATGACAATAATCTCACTATG
34115907 ACGTCTGATTTGTAGGTTGACAAATGACAATAATCTCACTATG
1 ACGTCTGATTTGTAGGTTGACAAATGACAATAATCTCACTATG
34115950 ACGT
1 ACGT
34115954 ATAGAATTAG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Consensus pattern (43 bp):
ACGTCTGATTTGTAGGTTGACAAATGACAATAATCTCACTATG
Found at i:34117737 original size:35 final size:31
Alignment explanation
Indices: 34117693--34117760 Score: 82
Period size: 35 Copynumber: 2.1 Consensus size: 31
34117683 TCACAATTTG
*
34117693 ATTCTCAATTTCTTGTTCTTAATTTTTTATTCTAA
1 ATTCCCAATTT-TT-TTCTTAA-TTTTT-TTCTAA
*
34117728 ATTCCCAATTTTTTTTTTAATTTTTTTCTAA
1 ATTCCCAATTTTTTTCTTAATTTTTTTCTAA
34117759 AT
1 AT
34117761 CCTTTGATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
31 8 0.26
32 5 0.16
33 6 0.19
34 2 0.06
35 10 0.32
ACGTcount: A:0.24, C:0.13, G:0.01, T:0.62
Consensus pattern (31 bp):
ATTCCCAATTTTTTTCTTAATTTTTTTCTAA
Found at i:34117945 original size:50 final size:51
Alignment explanation
Indices: 34117846--34117946 Score: 143
Period size: 50 Copynumber: 2.0 Consensus size: 51
34117836 TTCAATTACA
* * *
34117846 AATGGTAAGAAAATATTATTAAATTATTTAATTTTAATCTGTTAATATTAT
1 AATGGTAAGAAAATATTATTAAATTATTTAAATTAAATCAGTTAATATTAT
*
34117897 AATGTTAAGAAAAT-TTATTAAATTATTTAAATTAAAT-AGTTAATTATTAT
1 AATGGTAAGAAAATATTATTAAATTATTTAAATTAAATCAGTTAA-TATTAT
34117947 GCGGTTTAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
49 5 0.11
50 27 0.60
51 13 0.29
ACGTcount: A:0.46, C:0.01, G:0.07, T:0.47
Consensus pattern (51 bp):
AATGGTAAGAAAATATTATTAAATTATTTAAATTAAATCAGTTAATATTAT
Found at i:34119626 original size:62 final size:61
Alignment explanation
Indices: 34119560--34119703 Score: 153
Period size: 62 Copynumber: 2.3 Consensus size: 61
34119550 TCAACTCTAG
* * *
34119560 TTTATTTTCACAAGCATCACAGCATACGCAACCATTCCTTGCATCAAAACATACAAAACCAA
1 TTTATTTTCACAAGCACCACAACA-ACGCAACCATTCCTTGCACCAAAACATACAAAACCAA
* * * * * * * *
34119622 TTTATTTTCCAGAAGCACCTCAACAGCGCAATCATTCCTTTCACCAACACATACACAACCAG
1 TTTATTTT-CACAAGCACCACAACAACGCAACCATTCCTTGCACCAAAACATACAAAACCAA
*
34119684 TTTATTTTCCATAAGCACCA
1 TTTATTTT-CACAAGCACCA
34119704 TAGCACGTGC
Statistics
Matches: 68, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
62 56 0.82
63 12 0.18
ACGTcount: A:0.36, C:0.31, G:0.07, T:0.26
Consensus pattern (61 bp):
TTTATTTTCACAAGCACCACAACAACGCAACCATTCCTTGCACCAAAACATACAAAACCAA
Found at i:34119720 original size:62 final size:62
Alignment explanation
Indices: 34119586--34119702 Score: 171
Period size: 62 Copynumber: 1.9 Consensus size: 62
34119576 TCACAGCATA
* *
34119586 CGCAACCATTCCTTGCATCAAAACATACAAAACCAATTTATTTTCCAGAAGCACCTCAACAG
1 CGCAATCATTCCTTGCACCAAAACATACAAAACCAATTTATTTTCCAGAAGCACCTCAACAG
* * * * *
34119648 CGCAATCATTCCTTTCACCAACACATACACAACCAGTTTATTTTCCATAAGCACC
1 CGCAATCATTCCTTGCACCAAAACATACAAAACCAATTTATTTTCCAGAAGCACC
34119703 ATAGCACGTG
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
62 48 1.00
ACGTcount: A:0.36, C:0.32, G:0.07, T:0.25
Consensus pattern (62 bp):
CGCAATCATTCCTTGCACCAAAACATACAAAACCAATTTATTTTCCAGAAGCACCTCAACAG
Found at i:34132257 original size:15 final size:15
Alignment explanation
Indices: 34132245--34132280 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
34132235 AACTAAATTT
*
34132245 AAAATTAAAAAATAC
1 AAAATAAAAAAATAC
34132260 AAAATAAAAAAATAC
1 AAAATAAAAAAATAC
*
34132275 CAAATA
1 AAAATA
34132281 TATGAACTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.75, C:0.08, G:0.00, T:0.17
Consensus pattern (15 bp):
AAAATAAAAAAATAC
Found at i:34136587 original size:51 final size:51
Alignment explanation
Indices: 34136518--34136619 Score: 145
Period size: 51 Copynumber: 2.0 Consensus size: 51
34136508 TTCAATTACA
* *
34136518 AATGGTAAGAAATATTATTAAATTATTT-AATTTTAATCTGTTAATTATTAT
1 AATGGTAAGAAATATTATTAAATTATTTAAATTTAAAT-AGTTAATTATTAT
*
34136569 AATGTTAAGAAA-ATTTATTAAATTATTTAAATTTAAATAGTTAATTATTAT
1 AATGGTAAGAAATA-TTATTAAATTATTTAAATTTAAATAGTTAATTATTAT
34136620 GCGGTTTAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
50 1 0.02
51 37 0.80
52 8 0.17
ACGTcount: A:0.44, C:0.01, G:0.07, T:0.48
Consensus pattern (51 bp):
AATGGTAAGAAATATTATTAAATTATTTAAATTTAAATAGTTAATTATTAT
Found at i:34138316 original size:63 final size:62
Alignment explanation
Indices: 34138249--34138393 Score: 164
Period size: 62 Copynumber: 2.3 Consensus size: 62
34138239 TCAACTCTAG
* * * *
34138249 TTTATTTTTCACAAGCATCACAGCATACGCAACCATTCCTTGCATCAAAACATACAAAACCAA
1 TTTATTTTCCACAAGCACCACAACA-ACGCAACCATTCCTTGCACCAAAACATACAAAACCAA
* * * * * * * *
34138312 TTTATTTTCCAGAAGCACCTCAACAGCGCAATCATTCCTTTCACCAACACATACACAACCAG
1 TTTATTTTCCACAAGCACCACAACAACGCAACCATTCCTTGCACCAAAACATACAAAACCAA
*
34138374 TTTATTTTCCATAAGCACCA
1 TTTATTTTCCACAAGCACCA
34138394 TAGCACGTGC
Statistics
Matches: 68, Mismatches: 14, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
62 48 0.71
63 20 0.29
ACGTcount: A:0.36, C:0.30, G:0.07, T:0.27
Consensus pattern (62 bp):
TTTATTTTCCACAAGCACCACAACAACGCAACCATTCCTTGCACCAAAACATACAAAACCAA
Found at i:34138350 original size:62 final size:62
Alignment explanation
Indices: 34138276--34138392 Score: 171
Period size: 62 Copynumber: 1.9 Consensus size: 62
34138266 TCACAGCATA
*
34138276 CGCAACCATTCCTTGCATCAAAACATACAAAACCAATTTATTTTCCAGAAGCACCTCAACAG
1 CGCAACCATTCCTTGCACCAAAACATACAAAACCAATTTATTTTCCAGAAGCACCTCAACAG
* * * * * *
34138338 CGCAATCATTCCTTTCACCAACACATACACAACCAGTTTATTTTCCATAAGCACC
1 CGCAACCATTCCTTGCACCAAAACATACAAAACCAATTTATTTTCCAGAAGCACC
34138393 ATAGCACGTG
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
62 48 1.00
ACGTcount: A:0.36, C:0.32, G:0.07, T:0.25
Consensus pattern (62 bp):
CGCAACCATTCCTTGCACCAAAACATACAAAACCAATTTATTTTCCAGAAGCACCTCAACAG
Done.