Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 115 of 356
Found at i:36582703 original size:49 final size:50
Alignment explanation
Indices: 36582587--36582766 Score: 181
Period size: 49 Copynumber: 3.7 Consensus size: 50
36582577 GAGATGTGTT
* **
36582587 AGTGTAAGACCATGTTTGGGACATGGCATCGACACAGATATGTGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACACAGATATACGAGAGCC
* * * *
36582637 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTC-GAT-TACGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GACACAGATATACGAGAGCC
* ** ** * *
36582686 AGTGTAAGACCAAGTCTGGGACATGGCATCGACTTA-ATGGA-TA-AGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACACAGATATACGAGAGCC
*
36582733 AGTGCAAGACCATGTCTGGGACATGGCATCGACA
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACA
36582767 TTCTACCATA
Statistics
Matches: 110, Mismatches: 17, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
47 33 0.30
48 6 0.05
49 36 0.33
50 32 0.29
51 3 0.03
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.22
Consensus pattern (50 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACACAGATATACGAGAGCC
Found at i:36582706 original size:99 final size:96
Alignment explanation
Indices: 36582587--36582762 Score: 246
Period size: 96 Copynumber: 1.8 Consensus size: 96
36582577 GAGATGTGTT
* * * *
36582587 AGTGTAAGACCATGTTTGGGACATGGCATCGACACAGATATGTGA-GAGCCAGTGTAAGACCATG
1 AGTGTAAGACCAAGTCTGGGACATGGCATCG--ACAGA-ATG-GATAAGCCAGTGCAAGACCATG
36582651 TCTGGGACATGGCATCAGCCTCGATTACGATAGTC
62 TCTGGGACATGGCATCAGCCTCGATTACGATAGTC
** *
36582686 AGTGTAAGACCAAGTCTGGGACATGGCATCGACTTAATGGATAAGCTAGTGCAAGACCATGTCTG
1 AGTGTAAGACCAAGTCTGGGACATGGCATCGACAGAATGGATAAGCCAGTGCAAGACCATGTCTG
36582751 GGACATGGCATC
66 GGACATGGCATC
36582763 GACATTCTAC
Statistics
Matches: 69, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
95 2 0.03
96 35 0.51
97 3 0.04
99 29 0.42
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (96 bp):
AGTGTAAGACCAAGTCTGGGACATGGCATCGACAGAATGGATAAGCCAGTGCAAGACCATGTCTG
GGACATGGCATCAGCCTCGATTACGATAGTC
Found at i:36582755 original size:47 final size:46
Alignment explanation
Indices: 36582451--36582765 Score: 189
Period size: 47 Copynumber: 6.7 Consensus size: 46
36582441 TGAGAGCCAA
* * * * * *
36582451 TGTAAGACCATGTCTGGTACATGGCATCGGCATTAA-GACAAAAGATAG
1 TGTAAGACCATGTCTGGGACATGGCATCGAC-TGAATG--GATAGCTAG
* * *
36582499 TGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTA-AGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATC-GACT-GA-ATGGATAGCTAG
* * * * * *
36582545 TGTAAGA-TATGTCTAGGACATGG-ATTGGCT--ATGAGATGTGTTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACTGAATG-GAT-AGCTAG
* * * *
36582589 TGTAAGACCATGTTTGGGACATGGCATCGACACAGATATGTGAGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCG--ACTGA-ATG-GATAGCTAG
* * *
36582639 TGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATTACGATAG-TCAG
1 TGTAAGACCATGTCTGGGACATGGCATC-GACT-GAAT-GGATAGCT-AG
* *
36582688 TGTAAGACCAAGTCTGGGACATGGCATCGACTTAATGGATAAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACTGAATGGAT-AGCTAG
*
36582735 TGCAAGACCATGTCTGGGACATGGCATCGAC
1 TGTAAGACCATGTCTGGGACATGGCATCGAC
36582766 ATTCTACCAT
Statistics
Matches: 207, Mismatches: 39, Indels: 43
0.72 0.13 0.15
Matches are distributed among these distances:
41 3 0.01
42 1 0.00
44 10 0.05
45 16 0.08
46 37 0.18
47 53 0.26
48 13 0.06
49 36 0.17
50 32 0.15
51 6 0.03
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (46 bp):
TGTAAGACCATGTCTGGGACATGGCATCGACTGAATGGATAGCTAG
Found at i:36584742 original size:40 final size:40
Alignment explanation
Indices: 36584687--36584828 Score: 171
Period size: 40 Copynumber: 3.6 Consensus size: 40
36584677 TATTTGGATG
*
36584687 ATAACCGGGCTAAGTCCCGAAGTCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
36584727 ATAACCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * * * *
36584767 AGAGCCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* * *
36584807 ATATCC-GGTTAAATCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
36584829 TACTTGGCTT
Statistics
Matches: 88, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
39 15 0.17
40 73 0.83
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:36589332 original size:47 final size:47
Alignment explanation
Indices: 36589261--36589618 Score: 590
Period size: 47 Copynumber: 7.6 Consensus size: 47
36589251 CCCTTCGGGA
* * * * * *
36589261 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
36589308 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36589355 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36589402 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36589449 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36589496 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36589545 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36589592 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
36589619 TATTCAAATA
Statistics
Matches: 295, Mismatches: 14, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
47 250 0.85
49 45 0.15
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36589339 original size:25 final size:25
Alignment explanation
Indices: 36589311--36589389 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
36589301 ACTCGGCCCT
36589311 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * * *
36589336 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
36589358 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
36589383 ATCACAT
1 ATCACAT
36589390 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:36589582 original size:190 final size:188
Alignment explanation
Indices: 36589261--36589618 Score: 635
Period size: 190 Copynumber: 1.9 Consensus size: 188
36589251 CCCTTCGGGA
* * * *
36589261 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
36589326 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATC
36589391 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
131 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
* * *
36589449 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCAC--ATATATAC
36589514 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
36589579 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
129 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
36589619 TATTCAAATA
Statistics
Matches: 161, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
188 48 0.30
190 113 0.70
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (188 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
Found at i:36594994 original size:15 final size:16
Alignment explanation
Indices: 36594974--36595006 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
36594964 ATATATATTT
36594974 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
36594989 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
36595006 T
1 T
36595007 ATAACTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:36595092 original size:22 final size:22
Alignment explanation
Indices: 36595053--36595111 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
36595043 GTTTTAAGAA
*
36595053 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
36595074 TTGTTTTAATATTTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
36595096 AT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
36595112 GATTTATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 16 0.47
22 11 0.32
ACGTcount: A:0.25, C:0.00, G:0.05, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:36595128 original size:26 final size:24
Alignment explanation
Indices: 36595082--36595141 Score: 84
Period size: 26 Copynumber: 2.4 Consensus size: 24
36595072 ATTTGTTTTA
36595082 ATATTTATTTTTATATTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
36595106 ATATTTGATTTATTATATTTTTAAAT
1 ATATTT-ATTT-TTATATTTTTAAAT
* *
36595132 TTTTTTATTT
1 ATATTTATTT
36595142 AATGAAATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.25
26 18 0.56
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:36599799 original size:21 final size:21
Alignment explanation
Indices: 36599773--36599814 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
36599763 GATCAACCGC
36599773 TACCAAACAAATACTATAATA
1 TACCAAACAAATACTATAATA
*
36599794 TACCAAACAACTACTATAATA
1 TACCAAACAAATACTATAATA
36599815 GTGCATATCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.55, C:0.21, G:0.00, T:0.24
Consensus pattern (21 bp):
TACCAAACAAATACTATAATA
Found at i:36610219 original size:23 final size:25
Alignment explanation
Indices: 36610176--36610225 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 25
36610166 ATGGGAAAGA
*
36610176 AAAAAATAAGTTAGGGAATTAG-GG
1 AAAAAATAAGTTAGAGAATTAGAGG
*
36610200 AAAAATTAAGTTAGAG-ATTAGAGG
1 AAAAAATAAGTTAGAGAATTAGAGG
36610224 AA
1 AA
36610226 TAAGGGTTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 5 0.22
24 18 0.78
ACGTcount: A:0.52, C:0.00, G:0.26, T:0.22
Consensus pattern (25 bp):
AAAAAATAAGTTAGAGAATTAGAGG
Found at i:36610376 original size:43 final size:43
Alignment explanation
Indices: 36610323--36610480 Score: 136
Period size: 43 Copynumber: 3.4 Consensus size: 43
36610313 TTTACCTTTA
*
36610323 GCGGCGTTTATGAGAAAAATGCCTCTATTGTTTTTAACATTTT
1 GCGGCATTTATGAGAAAAATGCCTCTATTGTTTTTAACATTTT
** * ** * * *
36610366 GCGGCATTTATGAGAAAAACACCACTAACGCTACTCTCATAGGTGTACCTTTA
1 GCGGCATTTATGAGAAAAATGCCTCTATTG-T--T-T--T---T-AACATTTT
*
36610419 GCGGCGTTTATGAGAAAAATGCCTCTATTGTTTTTAACATTTT
1 GCGGCATTTATGAGAAAAATGCCTCTATTGTTTTTAACATTTT
36610462 GCGGCATTTATGAGAAAAA
1 GCGGCATTTATGAGAAAAA
36610481 CACCACTAAC
Statistics
Matches: 86, Mismatches: 19, Indels: 20
0.69 0.15 0.16
Matches are distributed among these distances:
43 47 0.55
44 2 0.02
46 1 0.01
47 2 0.02
49 2 0.02
50 1 0.01
52 2 0.02
53 29 0.34
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (43 bp):
GCGGCATTTATGAGAAAAATGCCTCTATTGTTTTTAACATTTT
Found at i:36610479 original size:96 final size:96
Alignment explanation
Indices: 36610315--36610513 Score: 398
Period size: 96 Copynumber: 2.1 Consensus size: 96
36610305 GTTATTGCTT
36610315 TACCTTTAGCGGCGTTTATGAGAAAAATGCCTCTATTGTTTTTAACATTTTGCGGCATTTATGAG
1 TACCTTTAGCGGCGTTTATGAGAAAAATGCCTCTATTGTTTTTAACATTTTGCGGCATTTATGAG
36610380 AAAAACACCACTAACGCTACTCTCATAGGTG
66 AAAAACACCACTAACGCTACTCTCATAGGTG
36610411 TACCTTTAGCGGCGTTTATGAGAAAAATGCCTCTATTGTTTTTAACATTTTGCGGCATTTATGAG
1 TACCTTTAGCGGCGTTTATGAGAAAAATGCCTCTATTGTTTTTAACATTTTGCGGCATTTATGAG
36610476 AAAAACACCACTAACGCTACTCTCATAGGTG
66 AAAAACACCACTAACGCTACTCTCATAGGTG
36610507 TACCTTT
1 TACCTTT
36610514 CGGCGCGTAG
Statistics
Matches: 103, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
96 103 1.00
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (96 bp):
TACCTTTAGCGGCGTTTATGAGAAAAATGCCTCTATTGTTTTTAACATTTTGCGGCATTTATGAG
AAAAACACCACTAACGCTACTCTCATAGGTG
Found at i:36622186 original size:31 final size:31
Alignment explanation
Indices: 36622151--36622214 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
36622141 AGAATGTTAC
36622151 GAAAGCCCCTTCGAAAAAGTTAGTAGAGCGT
1 GAAAGCCCCTTCGAAAAAGTTAGTAGAGCGT
** *
36622182 GAAAGCCTTTTCGAAAAAGTTAGTGGAGCGT
1 GAAAGCCCCTTCGAAAAAGTTAGTAGAGCGT
36622213 GA
1 GA
36622215 GTCTGATATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.34, C:0.16, G:0.28, T:0.22
Consensus pattern (31 bp):
GAAAGCCCCTTCGAAAAAGTTAGTAGAGCGT
Found at i:36624875 original size:4 final size:4
Alignment explanation
Indices: 36624854--36624892 Score: 60
Period size: 4 Copynumber: 9.8 Consensus size: 4
36624844 ACAAAGATCT
* *
36624854 ATAC ATGC ATAG ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
36624893 TATATATTAG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.49, C:0.21, G:0.05, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:36629707 original size:18 final size:18
Alignment explanation
Indices: 36629684--36629718 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
36629674 AGTGAGAATA
36629684 AGGAACCCAAAATCATTC
1 AGGAACCCAAAATCATTC
36629702 AGGAACCCAAAATCATT
1 AGGAACCCAAAATCATT
36629719 TTGACATTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.26, G:0.11, T:0.17
Consensus pattern (18 bp):
AGGAACCCAAAATCATTC
Found at i:36631967 original size:23 final size:23
Alignment explanation
Indices: 36631884--36631971 Score: 106
Period size: 23 Copynumber: 3.8 Consensus size: 23
36631874 TTAGTGCCAA
* *
36631884 TCTGGTGTGTTTGGGTAGATTAT
1 TCTGGTGTGTTTGGTTGGATTAT
* * *
36631907 TATGGTGTGTTTGAG-AGGATCAT
1 TCTGGTGTGTTTG-GTTGGATTAT
36631930 TCTGGTGTGTTTGGTTGGATTAT
1 TCTGGTGTGTTTGGTTGGATTAT
*
36631953 TCCGGTGTGTTTGGTTGGA
1 TCTGGTGTGTTTGGTTGGA
36631972 ATCCGTGTAT
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
22 1 0.02
23 53 0.96
24 1 0.02
ACGTcount: A:0.12, C:0.06, G:0.36, T:0.45
Consensus pattern (23 bp):
TCTGGTGTGTTTGGTTGGATTAT
Found at i:36632794 original size:7 final size:7
Alignment explanation
Indices: 36632782--36632822 Score: 73
Period size: 7 Copynumber: 5.7 Consensus size: 7
36632772 AGTTTTTCTT
36632782 TAAAAAA
1 TAAAAAA
36632789 TAAAAAA
1 TAAAAAA
36632796 TAAAAAA
1 TAAAAAA
36632803 TAAAAAA
1 TAAAAAA
36632810 TAATAAAA
1 TAA-AAAA
36632818 TAAAA
1 TAAAA
36632823 TAAAAATTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
7 26 0.79
8 7 0.21
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (7 bp):
TAAAAAA
Found at i:36632808 original size:21 final size:22
Alignment explanation
Indices: 36632783--36632828 Score: 62
Period size: 20 Copynumber: 2.2 Consensus size: 22
36632773 GTTTTTCTTT
36632783 AAAAAATAAAAAATAA-AAAAT
1 AAAAAATAAAAAATAATAAAAT
*
36632804 AAAAAAT-AATAA-AATAAAAT
1 AAAAAATAAAAAATAATAAAAT
36632824 AAAAA
1 AAAAA
36632829 TTTTCGGAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 2 0.09
20 14 0.61
21 7 0.30
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (22 bp):
AAAAAATAAAAAATAATAAAAT
Found at i:36641810 original size:29 final size:29
Alignment explanation
Indices: 36641762--36641840 Score: 140
Period size: 29 Copynumber: 2.7 Consensus size: 29
36641752 TTACACTTAC
*
36641762 TGAAATGTGAATAATGAATAAATTGAAAT
1 TGAAATGTGAATAGTGAATAAATTGAAAT
*
36641791 TGAAATGTGAATAGTAAATAAATTGAAAT
1 TGAAATGTGAATAGTGAATAAATTGAAAT
36641820 TGAAATGTGAATAGTGAATAA
1 TGAAATGTGAATAGTGAATAA
36641841 TGATTATTTT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 47 1.00
ACGTcount: A:0.51, C:0.00, G:0.19, T:0.30
Consensus pattern (29 bp):
TGAAATGTGAATAGTGAATAAATTGAAAT
Found at i:36642941 original size:41 final size:42
Alignment explanation
Indices: 36642844--36643008 Score: 260
Period size: 42 Copynumber: 4.0 Consensus size: 42
36642834 TCATTTTCTA
* * * * *
36642844 ATGCCATAGTCTAACTATGGTCTTACACATATTCACATATCG
1 ATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCG
*
36642886 ATGCGATAGCCCAGCTATGGTCTTACACGTAATCACATA-CG
1 ATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCG
*
36642927 ATGCCATAGCCCAGCTATAGTCTTACACGTAATCACATATCG
1 ATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCG
36642969 ATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATAT
1 ATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATAT
36643009 TGCCATGGTC
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
41 39 0.35
42 74 0.65
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (42 bp):
ATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCG
Found at i:36642983 original size:83 final size:83
Alignment explanation
Indices: 36642844--36643007 Score: 265
Period size: 83 Copynumber: 2.0 Consensus size: 83
36642834 TCATTTTCTA
* * * * *
36642844 ATGCCATAGTCTAACTATGGTCTTACACATATTCACATATCGATGCGATAGCCCAGCTATGGTCT
1 ATGCCATAGCCCAACTATAGTCTTACACATAATCACATATCGATGCCATAGCCCAGCTATGGTCT
36642909 TACACGTAATCACATACG
66 TACACGTAATCACATACG
* *
36642927 ATGCCATAGCCCAGCTATAGTCTTACACGTAATCACATATCGATGCCATAGCCCAGCTATGGTCT
1 ATGCCATAGCCCAACTATAGTCTTACACATAATCACATATCGATGCCATAGCCCAGCTATGGTCT
36642992 TACACGTAATCACATA
66 TACACGTAATCACATA
36643008 TTGCCATGGT
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
83 74 1.00
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (83 bp):
ATGCCATAGCCCAACTATAGTCTTACACATAATCACATATCGATGCCATAGCCCAGCTATGGTCT
TACACGTAATCACATACG
Found at i:36652794 original size:46 final size:46
Alignment explanation
Indices: 36652744--36652919 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
36652734 TGGTTGAGCA
36652744 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
36652790 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
36652835 CATCCGAACTCGTTCAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
36652883 CCCGAGCTCGTTGAGTTGTGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
36652920 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.57
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:36652900 original size:93 final size:93
Alignment explanation
Indices: 36652741--36652912 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
36652731 GGATGGTTGA
* * *
36652741 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTCAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
36652806 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
36652834 GCATCCGAACTCGTTCAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTCAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
36652899 TGTGTCCGAGTTCG
66 TGAGTCCGAGTTCG
36652913 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTCAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:36658266 original size:16 final size:15
Alignment explanation
Indices: 36658224--36658266 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 15
36658214 CTTAATTTGT
36658224 TCTTT-CTATTTATG
1 TCTTTACTATTTATG
*
36658238 TCTTTATTGATTTATG
1 TCTTTACT-ATTTATG
36658254 CTCTTTACTATTT
1 -TCTTTACTATTT
36658267 CTCTTATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
14 5 0.21
15 1 0.04
16 11 0.46
17 7 0.29
ACGTcount: A:0.16, C:0.14, G:0.07, T:0.63
Consensus pattern (15 bp):
TCTTTACTATTTATG
Found at i:36659805 original size:6 final size:6
Alignment explanation
Indices: 36659789--36659834 Score: 83
Period size: 6 Copynumber: 7.7 Consensus size: 6
36659779 CATTGAGTCC
*
36659789 ATTTAT CTTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTT
1 ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTT
36659835 TAATTTTTCT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.67
Consensus pattern (6 bp):
ATTTAT
Found at i:36659840 original size:6 final size:7
Alignment explanation
Indices: 36659796--36659841 Score: 50
Period size: 6 Copynumber: 7.4 Consensus size: 7
36659786 TCCATTTATC
36659796 TTTATA-
1 TTTATAT
36659802 TTTATA-
1 TTTATAT
36659808 TTTATA-
1 TTTATAT
36659814 TTTATA-
1 TTTATAT
36659820 TTTATA-
1 TTTATAT
36659826 TTTATAT
1 TTTATAT
36659833 TTTA-AT
1 TTTATAT
36659839 TTT
1 TTT
36659842 TCTTTTTATG
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
6 35 0.90
7 4 0.10
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (7 bp):
TTTATAT
Found at i:36659840 original size:18 final size:19
Alignment explanation
Indices: 36659796--36659872 Score: 79
Period size: 18 Copynumber: 4.2 Consensus size: 19
36659786 TCCATTTATC
36659796 TTTATATTTATATTTATA-
1 TTTATATTTATATTTATAT
36659814 TTTATATTTATATTTATAT
1 TTTATATTTATATTTATAT
* * *
36659833 TTTA-ATTTTTCTTTTTAT
1 TTTATATTTATATTTATAT
* *
36659851 GTTTAT-TTTGTCTTTATAT
1 -TTTATATTTATATTTATAT
36659870 TTT
1 TTT
36659873 GAACTCTATT
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
18 32 0.63
19 19 0.37
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.71
Consensus pattern (19 bp):
TTTATATTTATATTTATAT
Found at i:36659859 original size:12 final size:12
Alignment explanation
Indices: 36659789--36659859 Score: 70
Period size: 12 Copynumber: 5.8 Consensus size: 12
36659779 CATTGAGTCC
*
36659789 ATTTATCTTTAT
1 ATTTATTTTTAT
*
36659801 ATTTATATTTAT
1 ATTTATTTTTAT
*
36659813 ATTTATATTTAT
1 ATTTATTTTTAT
36659825 ATTTATATTTTAAT
1 ATTTAT-TTTT-AT
* *
36659839 TTTTCTTTTTAT
1 ATTTATTTTTAT
*
36659851 GTTTATTTT
1 ATTTATTTT
36659860 GTCTTTATAT
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
12 38 0.75
13 7 0.14
14 6 0.12
ACGTcount: A:0.25, C:0.03, G:0.01, T:0.70
Consensus pattern (12 bp):
ATTTATTTTTAT
Found at i:36660203 original size:30 final size:30
Alignment explanation
Indices: 36660169--36660230 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
36660159 GGACATGGTT
* *
36660169 GTGTGGCCAGCTCGTGGGGATCCCACGGCC
1 GTGTGGCCAGCCCGTAGGGATCCCACGGCC
36660199 GTGTGGCCAGCCCGTAGGGATCCCACGGCC
1 GTGTGGCCAGCCCGTAGGGATCCCACGGCC
36660229 GT
1 GT
36660231 TGCAATTTCT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.11, C:0.34, G:0.39, T:0.16
Consensus pattern (30 bp):
GTGTGGCCAGCCCGTAGGGATCCCACGGCC
Found at i:36666767 original size:33 final size:33
Alignment explanation
Indices: 36666730--36666809 Score: 108
Period size: 33 Copynumber: 2.4 Consensus size: 33
36666720 GAGGTGTACA
36666730 TTCCTTTTCAAGTGGTACACACAAAGTATACCT
1 TTCCTTTTCAAGTGGTACACACAAAGTATACCT
*
36666763 TTCCTTTTCATA-TGGTATACACAAAGTATACCT
1 TTCCTTTTCA-AGTGGTACACACAAAGTATACCT
** *
36666796 AACCTTTCCAAGTG
1 TTCCTTTTCAAGTG
36666810 TACCACTTGG
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
32 1 0.02
33 39 0.95
34 1 0.02
ACGTcount: A:0.30, C:0.24, G:0.11, T:0.35
Consensus pattern (33 bp):
TTCCTTTTCAAGTGGTACACACAAAGTATACCT
Found at i:36669807 original size:39 final size:40
Alignment explanation
Indices: 36669712--36669973 Score: 319
Period size: 39 Copynumber: 6.7 Consensus size: 40
36669702 TTGAATGATG
*
36669712 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
36669750 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
36669791 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
36669830 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
** * *
36669869 TCCGGGCTAAG-CCAAAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
36669908 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
36669947 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
36669974 AACGAGGAGC
Statistics
Matches: 199, Mismatches: 15, Indels: 17
0.86 0.06 0.07
Matches are distributed among these distances:
39 130 0.65
40 57 0.29
41 11 0.06
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:36679191 original size:40 final size:40
Alignment explanation
Indices: 36679146--36679376 Score: 243
Period size: 40 Copynumber: 5.8 Consensus size: 40
36679136 ATAACCACAA
* * *
36679146 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATATCAACTC
* *
36679186 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAATTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATATCAACTC
* * * *
36679226 GTACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATATCAACTC
* * *
36679266 GCACAATTGCCTTCGGGTCTTAACCCGGATAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATATCAACTC
* * * * *
36679305 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATATCAACTC
* * *
36679345 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAT
36679377 CATTCAAATG
Statistics
Matches: 172, Mismatches: 17, Indels: 5
0.89 0.09 0.03
Matches are distributed among these distances:
39 36 0.21
40 132 0.77
41 4 0.02
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATATCAACTC
Found at i:36679253 original size:80 final size:79
Alignment explanation
Indices: 36679126--36679376 Score: 299
Period size: 79 Copynumber: 3.2 Consensus size: 79
36679116 TCTTCGGAAT
* * * * * * * *
36679126 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAGCAACTCGCA
1 TTAGCCCGGATAT-ATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTAGCA
36679189 CAAATGCCTTCGGGTC
64 CAAATGCCTTCGGGTC
* * *
36679205 TTAGCCCGGATATATCAATTCGTACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCAC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCAC
*
36679270 AATTGCCTTCGGGTC
65 AAATGCCTTCGGGTC
* * * * *
36679285 TTAACCCGGATAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATA
1 TTAGCCCGGATATATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACA
*
36679350 AATGCCTTCGGGAC
66 AATGCCTTCGGGTC
36679364 TTAGCCCGGATAT
1 TTAGCCCGGATAT
36679377 CATTCAAATG
Statistics
Matches: 145, Mismatches: 24, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
79 72 0.50
80 70 0.48
81 3 0.02
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (79 bp):
TTAGCCCGGATATATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACA
AATGCCTTCGGGTC
Found at i:36682644 original size:33 final size:33
Alignment explanation
Indices: 36682574--36682686 Score: 90
Period size: 33 Copynumber: 3.5 Consensus size: 33
36682564 GGTGTACATT
* **
36682574 CCTTTTCAAGTGGTACATACAAAGTATACCTTT
1 CCTTTTCAAGTGGTACACACAAAGTATACCTAA
* *
36682607 CCTTTTCATA-TGGTATACACAATGTATACCTAA
1 CCTTTTCA-AGTGGTACACACAAAGTATACCTAA
** * *
36682640 CC-TTTCTAAGT-ACACACACAAAGTGTACATAA
1 CCTTTTC-AAGTGGTACACACAAAGTATACCTAA
*
36682672 CC-TTTCAAGTTGTAC
1 CCTTTTCAAGTGGTAC
36682687 CACTTGGGTA
Statistics
Matches: 63, Mismatches: 13, Indels: 9
0.74 0.15 0.11
Matches are distributed among these distances:
31 4 0.06
32 28 0.44
33 30 0.48
34 1 0.02
ACGTcount: A:0.33, C:0.23, G:0.11, T:0.34
Consensus pattern (33 bp):
CCTTTTCAAGTGGTACACACAAAGTATACCTAA
Found at i:36683879 original size:13 final size:13
Alignment explanation
Indices: 36683861--36683886 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
36683851 ACACATAATT
36683861 GATAAAAATTTTC
1 GATAAAAATTTTC
36683874 GATAAAAATTTTC
1 GATAAAAATTTTC
36683887 ATGCAATATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (13 bp):
GATAAAAATTTTC
Found at i:36687939 original size:51 final size:51
Alignment explanation
Indices: 36687868--36687984 Score: 225
Period size: 51 Copynumber: 2.3 Consensus size: 51
36687858 CTGATCACAT
36687868 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
36687919 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
*
36687970 TTGTCACTTGTCACT
1 TTATCACTTGTCACT
36687985 TGTCACTTAT
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 65 1.00
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (51 bp):
TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
Found at i:36687976 original size:7 final size:7
Alignment explanation
Indices: 36687960--36687998 Score: 60
Period size: 7 Copynumber: 5.6 Consensus size: 7
36687950 CTAAAGCTAC
*
36687960 CACTTAT
1 CACTTGT
36687967 CACTTGT
1 CACTTGT
36687974 CACTTGT
1 CACTTGT
36687981 CACTTGT
1 CACTTGT
*
36687988 CACTTAT
1 CACTTGT
36687995 CACT
1 CACT
36687999 GATTAGATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.21, C:0.31, G:0.08, T:0.41
Consensus pattern (7 bp):
CACTTGT
Found at i:36687983 original size:14 final size:14
Alignment explanation
Indices: 36687960--36687998 Score: 69
Period size: 14 Copynumber: 2.8 Consensus size: 14
36687950 CTAAAGCTAC
36687960 CACTTATCACTTGT
1 CACTTATCACTTGT
*
36687974 CACTTGTCACTTGT
1 CACTTATCACTTGT
36687988 CACTTATCACT
1 CACTTATCACT
36687999 GATTAGATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.21, C:0.31, G:0.08, T:0.41
Consensus pattern (14 bp):
CACTTATCACTTGT
Found at i:36688013 original size:65 final size:65
Alignment explanation
Indices: 36687909--36688047 Score: 215
Period size: 65 Copynumber: 2.1 Consensus size: 65
36687899 CTAAAGCTAC
*
36687909 CACTTATCACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGT
1 CACTTATCACTTATCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGT
* * * * *
36687974 CACTTGTCACTTGTCACTTATCACTGATTAGATAAGTGTAGCTGAGGCTACCACTTATCACTTGT
1 CACTTATCACTTATCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGT
*
36688039 CACTGATCA
1 CACTTATCA
36688048 GAAGTACTCA
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
65 66 1.00
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.34
Consensus pattern (65 bp):
CACTTATCACTTATCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGT
Found at i:36692250 original size:21 final size:22
Alignment explanation
Indices: 36692206--36692250 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
36692196 CCCAGATTTG
**
36692206 AAAAGATTAGAATAATATTGAA
1 AAAAGATTAGAATAATATCAAA
*
36692228 AAAAG-TTAGAGTAATATCAAA
1 AAAAGATTAGAATAATATCAAA
36692249 AA
1 AA
36692251 GAGTACTCCA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.60, C:0.02, G:0.13, T:0.24
Consensus pattern (22 bp):
AAAAGATTAGAATAATATCAAA
Found at i:36695134 original size:31 final size:31
Alignment explanation
Indices: 36695096--36695154 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
36695086 ACAAATGACA
36695096 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
*
36695127 AGTGAAAAGTGGTAGCTTCTGCTACCTG
1 AGTGAAAAGTGGTAGCTTCAGCTACCTG
36695155 CTAAAATCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
Found at i:36696319 original size:30 final size:30
Alignment explanation
Indices: 36696271--36696328 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
36696261 CAAGCCAATT
* *
36696271 CCACACGGGCTGAGCACACTCCCGTGTGAA
1 CCACACGGGCTGAGCACACGCCCATGTGAA
36696301 CCACACGGGCTG-GCCACACGCCCATGTG
1 CCACACGGGCTGAG-CACACGCCCATGTG
36696329 CCTGCCCGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 1 0.04
30 24 0.96
ACGTcount: A:0.21, C:0.40, G:0.28, T:0.12
Consensus pattern (30 bp):
CCACACGGGCTGAGCACACGCCCATGTGAA
Found at i:36698976 original size:47 final size:48
Alignment explanation
Indices: 36698917--36699047 Score: 165
Period size: 47 Copynumber: 2.8 Consensus size: 48
36698907 TTCGATCGAT
* * *
36698917 AAGTACCTATACCATGGCTCGTAGCCAAATCAAGGTAACTTATC-CCG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTCCA
* * * * * *
36698964 GAGTACCAATACCATGGCCCGTAGCCAAATTAAGGTATCTCCTCTCTA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTCCA
*
36699012 AAATACCTATACCATGGCCCGTAGCCAAATCAAGGT
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGT
36699048 GTAACACCCC
Statistics
Matches: 70, Mismatches: 13, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
47 37 0.53
48 33 0.47
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (48 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTCCA
Found at i:36700005 original size:27 final size:27
Alignment explanation
Indices: 36699975--36700115 Score: 191
Period size: 27 Copynumber: 5.2 Consensus size: 27
36699965 GTGATGAAGT
36699975 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATATTGTGGCAGAGC
36700002 CACCAGA-ACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
* *
36700029 CACCAGAT-CAGATAATCGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
36700056 CACCAGA-ACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
*
36700083 CACCAGAT-CAGATAATTGTGGCAAAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
36700110 CACCAG
1 CACCAG
36700116 GACGCTTCCT
Statistics
Matches: 102, Mismatches: 5, Indels: 14
0.84 0.04 0.12
Matches are distributed among these distances:
26 10 0.10
27 88 0.86
28 4 0.04
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATATTGTGGCAGAGC
Found at i:36700050 original size:54 final size:54
Alignment explanation
Indices: 36699975--36700115 Score: 239
Period size: 54 Copynumber: 2.6 Consensus size: 54
36699965 GTGATGAAGT
*
36699975 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCAAAGCCACCAGAACAGATATATGTGGCAGAGC
* *
36700029 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCAAAGCCACCAGAACAGATATATGTGGCAGAGC
36700083 CACCAGATCAGATAATTGTGGCAAAGCCACCAG
1 CACCAGATCAGATAATTGTGGCAAAGCCACCAG
36700116 GACGCTTCCT
Statistics
Matches: 82, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
53 5 0.06
54 77 0.94
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.16
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCAAAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:36700283 original size:28 final size:26
Alignment explanation
Indices: 36700221--36700294 Score: 85
Period size: 28 Copynumber: 2.8 Consensus size: 26
36700211 AAATTAACCC
** * *
36700221 TAGGGGTATAACGGTAATTTTGCACC
1 TAGGGGTATAATAGTAATTTTCCACA
36700247 TAGGGGTATAATAGTAATTTTCCATACA
1 TAGGGGTATAATAGTAATTTTCC--ACA
*
36700275 TAGGGGTATTATAGTAATTT
1 TAGGGGTATAATAGTAATTT
36700295 AACTGCTTTT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
26 20 0.49
28 21 0.51
ACGTcount: A:0.31, C:0.09, G:0.23, T:0.36
Consensus pattern (26 bp):
TAGGGGTATAATAGTAATTTTCCACA
Found at i:36701813 original size:27 final size:27
Alignment explanation
Indices: 36701783--36701960 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
36701773 ATATTGAGTC
* *
36701783 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
36701810 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
36701837 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** **
36701865 CGCACACTTAGTGCCGCATGGTCAGTT
1 CGCACACTTAGTGCTACATAATCAACT
* **
36701892 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
36701919 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
36701946 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36701961 GTACAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:36701922 original size:82 final size:81
Alignment explanation
Indices: 36701809--36701959 Score: 232
Period size: 82 Copynumber: 1.9 Consensus size: 81
36701799 TATAATCAAC
* *
36701809 TCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 TCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCACACTT
36701874 AGTGCCGCATGGTCAGT
65 AGTGCCGCATGGTCAGT
* **
36701891 TCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCACACTT
1 TCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTT
36701955 AGTGC
65 AGTGC
36701960 TGTACAATTT
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 16 0.25
82 47 0.75
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
GTGCCGCATGGTCAGT
Found at i:36716717 original size:48 final size:48
Alignment explanation
Indices: 36716661--36716815 Score: 156
Period size: 48 Copynumber: 3.2 Consensus size: 48
36716651 TTGCCCAACG
* *
36716661 ATGGTCTTACACAATG-TCTCATATCGATGCCAATGCAATATCCCAGAT
1 ATGGTCTTACAC-ATGATCTCATATCGATGCCAATGCCATGTCCCAGAT
*** ** * *
36716709 ATGGTCTTACATGGGATCAAATATCGATGCCAATGCCATGTTCCAGAC
1 ATGGTCTTACACATGATCTCATATCGATGCCAATGCCATGTCCCAGAT
*
36716757 ATGGTCTT-C-CATGGAATCTCATATCGATGCCAATGCCATGTCCTAG-T
1 ATGGTCTTACACAT-G-ATCTCATATCGATGCCAATGCCATGTCCCAGAT
36716804 CATGGTCTTACA
1 -ATGGTCTTACA
36716816 TTGGATAACA
Statistics
Matches: 84, Mismatches: 17, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
47 3 0.04
48 80 0.95
49 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.30
Consensus pattern (48 bp):
ATGGTCTTACACATGATCTCATATCGATGCCAATGCCATGTCCCAGAT
Found at i:36720239 original size:16 final size:16
Alignment explanation
Indices: 36720218--36720253 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
36720208 CTAAAATGTC
*
36720218 GAAATGCCGAAAAGCT
1 GAAATGCCAAAAAGCT
*
36720234 GAAATGTCAAAAAGCT
1 GAAATGCCAAAAAGCT
36720250 GAAA
1 GAAA
36720254 GTTTGGCTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.50, C:0.14, G:0.22, T:0.14
Consensus pattern (16 bp):
GAAATGCCAAAAAGCT
Found at i:36720253 original size:24 final size:24
Alignment explanation
Indices: 36720203--36720253 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
36720193 ATGAATCGGC
* *
36720203 AAAAGCTAAAATGTCGAAATGCCG
1 AAAAGCTAAAATGTCAAAAAGCCG
* *
36720227 AAAAGCTGAAATGTCAAAAAGCTG
1 AAAAGCTAAAATGTCAAAAAGCCG
36720251 AAA
1 AAA
36720254 GTTTGGCTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.51, C:0.14, G:0.20, T:0.16
Consensus pattern (24 bp):
AAAAGCTAAAATGTCAAAAAGCCG
Found at i:36720545 original size:28 final size:28
Alignment explanation
Indices: 36720464--36720545 Score: 87
Period size: 28 Copynumber: 2.9 Consensus size: 28
36720454 GTGAGCATGA
* *
36720464 ATATGAATGTGACTGGG-TCTAACGGGCC
1 ATATGAATGTGATTGGGCT-TAATGGGCC
*
36720492 ATAT-AACTGTGATTTGGGCCTAATGGGCC
1 ATATGAA-TGTGA-TTGGGCTTAATGGGCC
*
36720521 ATATGAATATGATTGGGCTTAATGG
1 ATATGAATGTGATTGGGCTTAATGG
36720546 TTCAAATACA
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
27 2 0.04
28 21 0.47
29 20 0.44
30 2 0.04
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.30
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCTTAATGGGCC
Found at i:36727400 original size:28 final size:28
Alignment explanation
Indices: 36727361--36727456 Score: 108
Period size: 28 Copynumber: 3.4 Consensus size: 28
36727351 TAATTTTGCA
*
36727361 CACACACAGTGCCTTACATCAGATCTCG
1 CACACATAGTGCCTTACATCAGATCTCG
*
36727389 CACACATAGTGCTCGATTA-AT-A-ATTTCG
1 CACACATAGTGC-C--TTACATCAGATCTCG
* *
36727417 CACACATAGTGCCTTACACCCGATCTCG
1 CACACATAGTGCCTTACATCAGATCTCG
36727445 CACACATAGTGC
1 CACACATAGTGC
36727457 TTTGTTACTA
Statistics
Matches: 57, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
25 3 0.05
26 1 0.02
27 1 0.02
28 45 0.79
29 2 0.04
30 2 0.04
31 3 0.05
ACGTcount: A:0.29, C:0.32, G:0.15, T:0.24
Consensus pattern (28 bp):
CACACATAGTGCCTTACATCAGATCTCG
Found at i:36727442 original size:56 final size:56
Alignment explanation
Indices: 36727361--36727482 Score: 167
Period size: 56 Copynumber: 2.2 Consensus size: 56
36727351 TAATTTTGCA
* *
36727361 CACACACAGTGCCTTACATCAGATCTCGCACACATAGTGC-TCGATTAATAAT-TTCG
1 CACACATAGTGCCTTACACCAGATCTCGCACACATAGTGCTTCG-TTAATAATCTT-G
* * *
36727417 CACACATAGTGCCTTACACCCGATCTCGCACACATAGTGCTTTGTTACTAATCTTG
1 CACACATAGTGCCTTACACCAGATCTCGCACACATAGTGCTTCGTTAATAATCTTG
36727473 CACACATAGT
1 CACACATAGT
36727483 ACATATATTC
Statistics
Matches: 59, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
56 55 0.93
57 4 0.07
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.28
Consensus pattern (56 bp):
CACACATAGTGCCTTACACCAGATCTCGCACACATAGTGCTTCGTTAATAATCTTG
Found at i:36727470 original size:28 final size:27
Alignment explanation
Indices: 36727383--36727482 Score: 85
Period size: 28 Copynumber: 3.6 Consensus size: 27
36727373 CTTACATCAG
* *
36727383 ATCTCGCACACATAGTGCTCGATTAATA
1 ATCTCGCACACATAGTGCTTG-TTACTA
* ** **
36727411 ATTTCGCACACATAGTGCCTT-ACACCCG
1 ATCTCGCACACATAGTG-CTTGTTA-CTA
36727439 ATCTCGCACACATAGTGCTTTGTTACTA
1 ATCTCGCACACATAGTGC-TTGTTACTA
*
36727467 ATCTTGCACACATAGT
1 ATCTCGCACACATAGT
36727483 ACATATATTC
Statistics
Matches: 55, Mismatches: 13, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
27 2 0.04
28 50 0.91
29 3 0.05
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.30
Consensus pattern (27 bp):
ATCTCGCACACATAGTGCTTGTTACTA
Found at i:36738680 original size:46 final size:45
Alignment explanation
Indices: 36738613--36738786 Score: 158
Period size: 46 Copynumber: 3.8 Consensus size: 45
36738603 GTAACCCACC
* *
36738613 CATAAGTGAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
* *
36738658 GCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGATGCCTAATT-ACAT
1 -CATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--ATTCGCAT
* * **
36738708 C-TCACG-G-ACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CAT-AAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
* *
36738751 CCATAAGTAAACTCGGACTCAACTCAACGAGTTCGG
1 -CATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
36738787 ATGCTCAACC
Statistics
Matches: 104, Mismatches: 13, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 4 0.04
45 1 0.01
46 58 0.56
47 23 0.22
48 3 0.03
49 4 0.04
50 3 0.03
51 2 0.02
ACGTcount: A:0.31, C:0.29, G:0.20, T:0.21
Consensus pattern (45 bp):
CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
Found at i:36738729 original size:93 final size:93
Alignment explanation
Indices: 36738622--36738790 Score: 257
Period size: 93 Copynumber: 1.8 Consensus size: 93
36738612 CCATAAGTGA
** * * *
36738622 ACTCGAACTCAACTCAACGAGCTCGGGCGTTCGCATGCATAAGTGAACTCGGACTCAACTCAACA
1 ACTCGAACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTAAACTCGGACTCAACTCAACA
36738687 AGCTCGGATGCCTAATTACATCTCACGG
66 AGCTCGGATGCCTAATTACATCTCACGG
* * *
36738715 ACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTAAACTCGGACTCAACTCAACG
1 ACTCGAACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTAAACTCGGACTCAACTCAACA
*
36738780 AGTTCGGATGC
66 AGCTCGGATGC
36738791 TCAACCATCC
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 67 1.00
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
ACTCGAACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTAAACTCGGACTCAACTCAACA
AGCTCGGATGCCTAATTACATCTCACGG
Found at i:36741203 original size:17 final size:17
Alignment explanation
Indices: 36741181--36741215 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
36741171 CCTCACACGG
36741181 GCAGACCACACGGCCAT
1 GCAGACCACACGGCCAT
36741198 GCAGACCACACGGCCAT
1 GCAGACCACACGGCCAT
36741215 G
1 G
36741216 TCAATTTGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.40, G:0.26, T:0.06
Consensus pattern (17 bp):
GCAGACCACACGGCCAT
Found at i:36756651 original size:40 final size:40
Alignment explanation
Indices: 36756596--36756912 Score: 535
Period size: 40 Copynumber: 7.9 Consensus size: 40
36756586 GCATGAGCAT
36756596 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
36756636 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
36756676 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
36756716 TTGATAAATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
36756756 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
* * *
36756796 TTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
36756836 TTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
* * * *
36756876 TTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGC
36756913 TTGCGGTTAT
Statistics
Matches: 259, Mismatches: 18, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 259 1.00
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (40 bp):
TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
Found at i:36764935 original size:40 final size:40
Alignment explanation
Indices: 36764880--36765194 Score: 517
Period size: 40 Copynumber: 7.9 Consensus size: 40
36764870 GCATGAGCAT
*
36764880 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
36764920 TTGATATATCCGGGCTAA-ACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
36764959 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
36764999 TTGATAAATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
36765039 TTGATATATCCGGGCTAA-AACCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
* * *
36765078 TTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
36765118 TTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
* * * *
36765158 TTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGC
36765195 TTGCGGTTAT
Statistics
Matches: 256, Mismatches: 17, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
39 76 0.30
40 180 0.70
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (40 bp):
TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
Found at i:36765011 original size:79 final size:80
Alignment explanation
Indices: 36764880--36765194 Score: 517
Period size: 79 Copynumber: 4.0 Consensus size: 80
36764870 GCATGAGCAT
*
36764880 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAA-ACCCGA
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGA
*
36764944 AGGCATTTGTGCGAG
66 AGGCAATTGTGCGAG
*
36764959 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAAATCCGGGCTAAGACCCGA
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGA
*
36765024 AGGCATTTGTGCGAG
66 AGGCAATTGTGCGAG
*
36765039 TTGATATATCCGGGCTAA-AACCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGA
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGA
* *
36765103 AGGCAATTATGCAAG
66 AGGCAATTGTGCGAG
* * * *
36765118 TTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATACCCGGGTTAAGACCCGA
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGA
36765183 AGGCAATTGTGC
66 AGGCAATTGTGC
36765195 TTGCGGTTAT
Statistics
Matches: 221, Mismatches: 13, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
79 130 0.59
80 91 0.41
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (80 bp):
TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGA
AGGCAATTGTGCGAG
Found at i:36765223 original size:119 final size:119
Alignment explanation
Indices: 36764880--36765194 Score: 522
Period size: 119 Copynumber: 2.6 Consensus size: 119
36764870 GCATGAGCAT
*
36764880 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAACCCGAA
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAACCCGAA
* * *
36764945 GGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
66 GGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAG
* *
36764999 TTGATAAATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAAACCGAA
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAACCCGAA
36765064 GGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAG
66 GGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAG
* * * *
36765118 TTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATACCCGGGTTAAGACCCGA
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAA-ACCCGA
*
36765183 AGGCAATTGTGC
65 AGGCATTTGTGC
36765195 TTGCGGTTAT
Statistics
Matches: 182, Mismatches: 13, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
119 166 0.91
120 16 0.09
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (119 bp):
TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAACCCGAA
GGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAG
Found at i:36767417 original size:69 final size:69
Alignment explanation
Indices: 36767243--36767417 Score: 217
Period size: 70 Copynumber: 2.5 Consensus size: 69
36767233 CTTTCCAAGG
* ** *
36767243 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTTG
36767308 TTTT
66 TTTT
* ** * *
36767312 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
1 -AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTT-
36767377 TGTTTT
64 TGTTTT
** *
36767383 -AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
36767418 TTTAATTTTT
Statistics
Matches: 91, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
69 31 0.34
70 55 0.60
71 5 0.05
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.34
Consensus pattern (69 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTTG
TTTT
Found at i:36767565 original size:76 final size:75
Alignment explanation
Indices: 36767435--36767775 Score: 429
Period size: 77 Copynumber: 4.5 Consensus size: 75
36767425 TTTGTTTTTC
* *
36767435 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
36767500 GTTGTTAAAAA
66 GTT-TTAAAAA
* ** *
36767511 AAAATTAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAAGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
36767576 GTTTT---CA
66 GTTTTAAAAA
* * ** * * *
36767583 AAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
36767648 GTTTTCAAAAAA
66 GTTTT--AAAAA
* * *
36767660 AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCAATT
*
36767724 TCTGTTTTTAAAA
63 TCTGTTTTAAAAA
*
36767737 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
36767776 ATTACACACT
Statistics
Matches: 232, Mismatches: 24, Indels: 16
0.85 0.09 0.06
Matches are distributed among these distances:
72 64 0.28
75 2 0.01
76 63 0.27
77 74 0.32
78 1 0.00
79 28 0.12
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32
Consensus pattern (75 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
GTTTTAAAAA
Found at i:36767626 original size:72 final size:72
Alignment explanation
Indices: 36767421--36767770 Score: 371
Period size: 72 Copynumber: 4.7 Consensus size: 72
36767411 TAAGCCTTTT
* *
36767421 AATTTTTGTTTTTC-AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAAGACACGCTGAG
1 AATTTCTG-TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAG
36767485 GTAATTTC
65 GTAATTTC
* * ** *
36767493 AATTTCTGTTGTTAAAAAAAAATTAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCT
1 AATTTCTGTT-TT---CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCT
*
36767558 GAAGTAATTTC
62 GAGGTAATTTC
* * ** *
36767569 AATTTCTGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGG
*
36767634 TATTTTC
66 TAATTTC
* *
36767641 AATTTCTGTTTTCAAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACA
1 AATTTCTGTTTTC-----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG---ACA
* *
36767705 TGCTGAGGTATTTTC
58 CGCTGAGGTAATTTC
*
36767720 AATTTCTGTTTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 AATTTCTG-TTTT--CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
36767771 TTCAGATTAC
Statistics
Matches: 238, Mismatches: 24, Indels: 27
0.82 0.08 0.09
Matches are distributed among these distances:
71 2 0.01
72 74 0.31
75 2 0.01
76 63 0.26
77 69 0.29
79 24 0.10
80 4 0.02
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34
Consensus pattern (72 bp):
AATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGG
TAATTTC
Found at i:36767952 original size:54 final size:54
Alignment explanation
Indices: 36767848--36767952 Score: 140
Period size: 54 Copynumber: 1.9 Consensus size: 54
36767838 GATGAGGTAA
* * *
36767848 TTTTAATTTCTGTTTGTCAAGAATCAACTCATATTGCTAGAGGTGGGTTGAACC
1 TTTTAATTTCTCTTTGTCAAGAATCAACTCATATTGCAAGAGGTGAGTTGAACC
* * *
36767902 TTTTAATTTCTACTTTTTCAA-AATCAGCTCATATTGCAAGAGGTTAGTTGA
1 TTTTAATTTCT-CTTTGTCAAGAATCAACTCATATTGCAAGAGGTGAGTTGA
36767953 GCCTCGGGGC
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
54 37 0.84
55 7 0.16
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (54 bp):
TTTTAATTTCTCTTTGTCAAGAATCAACTCATATTGCAAGAGGTGAGTTGAACC
Found at i:36779802 original size:10 final size:10
Alignment explanation
Indices: 36779787--36779829 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
36779777 CAATTCACCA
36779787 ACCAAATCAT
1 ACCAAATCAT
*
36779797 ACCAAATCTAA
1 ACCAAATC-AT
36779808 ACCAAAATCAT
1 ACC-AAATCAT
*
36779819 ACCAAAGCAT
1 ACCAAATCAT
36779829 A
1 A
36779830 GTTTCAATAC
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
10 15 0.54
11 8 0.29
12 5 0.18
ACGTcount: A:0.53, C:0.28, G:0.02, T:0.16
Consensus pattern (10 bp):
ACCAAATCAT
Found at i:36781499 original size:39 final size:40
Alignment explanation
Indices: 36781454--36781564 Score: 98
Period size: 40 Copynumber: 2.8 Consensus size: 40
36781444 CGGGGTTTAG
* * *
36781454 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
36781493 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * *
36781533 CCGGATATAGTCGCTAGCACAAATGCCTTCGG
1 CCGGATATAACCACTAGCATAAAGGCCTTCGG
36781565 ATCTTAGTCC
Statistics
Matches: 60, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
39 15 0.25
40 45 0.75
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:36781524 original size:40 final size:40
Alignment explanation
Indices: 36781477--36781620 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
36781467 CTCGCACAAG
* * * * *
36781477 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
36781517 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
36781557 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
36781598 GCCTTC-GGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
36781621 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
39 3 0.03
40 71 0.77
41 18 0.20
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:36789515 original size:39 final size:40
Alignment explanation
Indices: 36789470--36789637 Score: 97
Period size: 40 Copynumber: 4.2 Consensus size: 40
36789460 CGGGGTTTAG
* * *
36789470 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
36789509 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * * **
36789549 CCGGATATAGTCGCTATCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
36789589 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
36789630 CCGGATAT
1 CCGGATAT
36789638 CATTCGAGTA
Statistics
Matches: 107, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
39 18 0.17
40 60 0.56
41 26 0.24
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:36789628 original size:41 final size:40
Alignment explanation
Indices: 36789493--36789637 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
36789483 CTCGCACAAG
* * * * *
36789493 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
*
36789533 GCCTTCGGGACTTAGCCCGGATATAGTCGCTATCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
36789573 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
36789614 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
36789638 CATTCGAGTA
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 3 0.03
40 58 0.64
41 26 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:36793578 original size:16 final size:18
Alignment explanation
Indices: 36793546--36793581 Score: 58
Period size: 16 Copynumber: 2.1 Consensus size: 18
36793536 TATTTTATGC
36793546 AAAAGAAAGGAAATAAAT
1 AAAAGAAAGGAAATAAAT
36793564 AAAAGAAA-G-AATAAAT
1 AAAAGAAAGGAAATAAAT
36793580 AA
1 AA
36793582 GAAACGTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 9 0.50
17 1 0.06
18 8 0.44
ACGTcount: A:0.75, C:0.00, G:0.14, T:0.11
Consensus pattern (18 bp):
AAAAGAAAGGAAATAAAT
Found at i:36795358 original size:40 final size:40
Alignment explanation
Indices: 36795279--36795535 Score: 315
Period size: 40 Copynumber: 6.5 Consensus size: 40
36795269 CGGATGATAA
* *
36795279 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * * * *
36795319 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATAT
*
36795359 CCGGGCTAAGACCCGAAGGCATTTGTCCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * * * *
36795399 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATAT
36795439 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * *
36795479 CCGGGCTAAGACCTGAGGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
36795519 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
36795536 ATACTTGGGT
Statistics
Matches: 183, Mismatches: 29, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
38 1 0.01
39 15 0.08
40 163 0.89
41 4 0.02
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:36795417 original size:80 final size:80
Alignment explanation
Indices: 36795279--36795535 Score: 394
Period size: 80 Copynumber: 3.2 Consensus size: 80
36795269 CGGATGATAA
* *
36795279 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTA
36795344 TGCTAGTGATTATAT
66 TGCTAGTGATTATAT
*
36795359 CCGGGCTAAGACCCGAAGGCATTTGTCCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTA
36795424 TGCTAGTGATTATAT
66 TGCTAGTGATTATAT
* * * * *
36795439 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCTGAGGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTA
*
36795504 TGCGAGTTG-TTATAT
66 TGCTAG-TGATTATAT
36795519 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
36795536 ATACTTGGGT
Statistics
Matches: 165, Mismatches: 10, Indels: 5
0.92 0.06 0.03
Matches are distributed among these distances:
78 1 0.01
79 13 0.08
80 149 0.90
81 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTA
TGCTAGTGATTATAT
Found at i:36798231 original size:16 final size:16
Alignment explanation
Indices: 36798210--36798245 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
36798200 ACACGGAAGC
36798210 TTTTGAAACTAAATAA
1 TTTTGAAACTAAATAA
36798226 TTTTGAAACTAAATAA
1 TTTTGAAACTAAATAA
36798242 TTTT
1 TTTT
36798246 CGTAATCATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.44
Consensus pattern (16 bp):
TTTTGAAACTAAATAA
Found at i:36800121 original size:27 final size:27
Alignment explanation
Indices: 36800091--36800142 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
36800081 AACACGCCAA
* *
36800091 TATAATATAGCCTCCCAAGCACACCGG
1 TATAACATAGCCTCCCAAACACACCGG
*
36800118 TATAACATATCCTCCCAAACACACC
1 TATAACATAGCCTCCCAAACACACC
36800143 AATAAGGCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.37, C:0.37, G:0.08, T:0.19
Consensus pattern (27 bp):
TATAACATAGCCTCCCAAACACACCGG
Found at i:36801058 original size:17 final size:17
Alignment explanation
Indices: 36801036--36801071 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
36801026 CTTTTTTTCG
36801036 TTTTGTTC-TCTGTTCTT
1 TTTTGTTCTTCT-TTCTT
36801053 TTTTGTTCTTCTTTCTT
1 TTTTGTTCTTCTTTCTT
36801070 TT
1 TT
36801072 ACTTTCTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 15 0.83
18 3 0.17
ACGTcount: A:0.00, C:0.17, G:0.08, T:0.75
Consensus pattern (17 bp):
TTTTGTTCTTCTTTCTT
Found at i:36802932 original size:15 final size:16
Alignment explanation
Indices: 36802912--36802941 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
36802902 CAGCAATCCC
36802912 GTAACAAAA-TCCATA
1 GTAACAAAATTCCATA
36802927 GTAACAAAATTCCAT
1 GTAACAAAATTCCAT
36802942 TTCTATTCCG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.50, C:0.20, G:0.07, T:0.23
Consensus pattern (16 bp):
GTAACAAAATTCCATA
Found at i:36806788 original size:39 final size:39
Alignment explanation
Indices: 36806584--36806806 Score: 200
Period size: 40 Copynumber: 5.6 Consensus size: 39
36806574 TTGAATGCTG
* * * * *
36806584 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
36806624 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
36806663 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* * *
36806704 TCCAGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
36806744 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
36806783 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
36806807 TGAACGAGGA
Statistics
Matches: 155, Mismatches: 20, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
39 40 0.26
40 101 0.65
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:36809858 original size:44 final size:44
Alignment explanation
Indices: 36809704--36809919 Score: 166
Period size: 47 Copynumber: 4.6 Consensus size: 44
36809694 TGCGCCAGTA
* * *
36809704 TAAGACCATGTCTGGGACATGGCATCGGCATCCAGACGAGGGCTAGTG
1 TAAGA-CATGTCTGGGACAT-GCATCGGC-TCAAGA-GTGAGCTAGTG
* *
36809752 TAAGACATGTCTGGGACATGCATCGGCCTCGACAAAGAT-AGCCAGTG
1 TAAGACATGTCTGGGACATGCATCGG-CTC-A-AGAG-TGAGCTAGTG
* * *
36809799 TGAGACTTGTCTGGGACATGCATCGGCT-AAGAGTTGTGCTAGTG
1 TAAGACATGTCTGGGACATGCATCGGCTCAAGAG-TGAGCTAGTG
* * * *
36809843 TAAGACATGTCTGGGACATGCATCGGCATACATATATGAGAGTTAGTA
1 TAAGACATGTCTGGGACATGCATCGGC-T-CA-AGA-GTGAGCTAGTG
*
36809891 TAAGACGATGTTTGGGACATGGCATCGGC
1 TAAGAC-ATGTCTGGGACAT-GCATCGGC
36809920 AATTTATCCC
Statistics
Matches: 137, Mismatches: 19, Indels: 22
0.77 0.11 0.12
Matches are distributed among these distances:
43 4 0.03
44 32 0.23
45 1 0.01
46 11 0.08
47 47 0.34
48 21 0.15
49 13 0.09
50 8 0.06
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.24
Consensus pattern (44 bp):
TAAGACATGTCTGGGACATGCATCGGCTCAAGAGTGAGCTAGTG
Found at i:36812282 original size:16 final size:16
Alignment explanation
Indices: 36812263--36812293 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
36812253 CTTTTTCACT
36812263 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
36812279 TACTTACTTACTTAA
1 TACTCACTTACTTAA
36812294 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:36812299 original size:20 final size:20
Alignment explanation
Indices: 36812260--36812299 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
36812250 AAACTTTTTC
* *
36812260 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
36812280 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
36812300 TTATTAATAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:36816056 original size:29 final size:30
Alignment explanation
Indices: 36816013--36816070 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
36816003 CTTCCTTTCC
* *
36816013 CTTTTTTAATAAATGACCCAGTATTTTTAA
1 CTTTTTTAATAAATGACCCAATATGTTTAA
* *
36816043 CTTTTTT-GTAAATGGCCCAATATGTTTA
1 CTTTTTTAATAAATGACCCAATATGTTTA
36816071 TGCTTTTTCT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 17 0.71
30 7 0.29
ACGTcount: A:0.29, C:0.14, G:0.10, T:0.47
Consensus pattern (30 bp):
CTTTTTTAATAAATGACCCAATATGTTTAA
Found at i:36839817 original size:29 final size:29
Alignment explanation
Indices: 36839783--36839856 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
36839773 TAATCAACCG
*
36839783 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
36839812 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
36839841 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
36839857 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:36851915 original size:22 final size:22
Alignment explanation
Indices: 36851888--36851931 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
36851878 TGAAGCAGCC
36851888 TTGAAGGTAACTGATGTTCAGG
1 TTGAAGGTAACTGATGTTCAGG
36851910 TTGAAGGTAACTGATGTTCAGG
1 TTGAAGGTAACTGATGTTCAGG
36851932 CTTAACCTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.09, G:0.32, T:0.32
Consensus pattern (22 bp):
TTGAAGGTAACTGATGTTCAGG
Found at i:36871141 original size:79 final size:81
Alignment explanation
Indices: 36870973--36871157 Score: 209
Period size: 79 Copynumber: 2.3 Consensus size: 81
36870963 GCTACTCGTT
* *
36870973 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* **
36871037 GATTTAGTAACTCGCAC
65 GATATAGTAACTAACAC
* * **
36871054 CAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTC-GGAGCTTAGTCCG
1 CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
* *
36871116 GATATGGTCACTTAACA-
65 GATATAGTAAC-TAACAC
36871133 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
36871158 CATCATTCAA
Statistics
Matches: 88, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 58 0.66
80 24 0.27
81 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTAACAC
Found at i:36871157 original size:40 final size:40
Alignment explanation
Indices: 36870954--36871157 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
36870944 CGGAATTTAA
** *
36870954 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
36870994 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
36871034 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
36871073 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGAGCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * **
36871113 CCGGATATGGTCACTTAACACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
36871153 CCGGA
1 CCGGA
36871158 CATCATTCAA
Statistics
Matches: 138, Mismatches: 19, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 93 0.67
41 11 0.08
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:36879242 original size:39 final size:39
Alignment explanation
Indices: 36879179--36879280 Score: 154
Period size: 39 Copynumber: 2.6 Consensus size: 39
36879169 TAGCCCGTTA
*
36879179 TAGTAACTCGCA-CAATGCCTTCGGGACTT-ACCCGGATT
1 TAGTAACTCGCACCAATGCCTTCGGG-CTTAACCCGGAAT
36879217 TAGTAACTCGCACCAATGCCTTCGGGCTTAACCCGGAAT
1 TAGTAACTCGCACCAATGCCTTCGGGCTTAACCCGGAAT
* *
36879256 TAGTATCTCGCACAAATGCCTTCGG
1 TAGTAACTCGCACCAATGCCTTCGG
36879281 ATCTTAGTCC
Statistics
Matches: 59, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
38 15 0.25
39 44 0.75
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (39 bp):
TAGTAACTCGCACCAATGCCTTCGGGCTTAACCCGGAAT
Found at i:36891187 original size:40 final size:40
Alignment explanation
Indices: 36891108--36891363 Score: 324
Period size: 40 Copynumber: 6.5 Consensus size: 40
36891098 CGGATGATAA
* *
36891108 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * * * *
36891148 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATAT
36891188 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * * * *
36891228 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATAT
36891268 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* *
36891308 -CGGGCTAAGACCCGAGGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
36891347 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
36891364 ATACTTGGGT
Statistics
Matches: 185, Mismatches: 25, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
38 1 0.01
39 53 0.29
40 127 0.69
41 4 0.02
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:36891246 original size:80 final size:80
Alignment explanation
Indices: 36891108--36891363 Score: 403
Period size: 80 Copynumber: 3.2 Consensus size: 80
36891098 CGGATGATAA
* *
36891108 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTA
36891173 TGCTAGTGATTATAT
66 TGCTAGTGATTATAT
36891188 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTA
36891253 TGCTAGTGATTATAT
66 TGCTAGTGATTATAT
* * * *
36891268 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT-CGGGCTAAGACCCGAGGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTA
*
36891332 TGCGAGTTG-TTATAT
66 TGCTAG-TGATTATAT
36891347 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
36891364 ATACTTGGGT
Statistics
Matches: 167, Mismatches: 7, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
77 1 0.01
78 13 0.08
79 33 0.20
80 120 0.72
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTA
TGCTAGTGATTATAT
Found at i:36903738 original size:25 final size:25
Alignment explanation
Indices: 36903682--36903741 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
36903672 AGGGTTATCG
*
36903682 ATTTCAGCTCTTATAAGCTTACCATT
1 ATTT-AGCTCATATAAGCTTACCATT
* *
36903708 -TCTTAGCTCATATGAGCTTACCGTT
1 AT-TTAGCTCATATAAGCTTACCATT
36903733 ATTTAGCTC
1 ATTTAGCTC
36903742 GGAGGAGCTT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
25 26 0.90
26 3 0.10
ACGTcount: A:0.23, C:0.23, G:0.12, T:0.42
Consensus pattern (25 bp):
ATTTAGCTCATATAAGCTTACCATT
Found at i:36903946 original size:26 final size:26
Alignment explanation
Indices: 36903915--36903966 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
36903905 CACAGGTATT
36903915 TACATGAGATATATGA-AAATGATTTG
1 TACATGAGATATA-GATAAATGATTTG
* *
36903941 TACATGATATATAGATACATGATTTG
1 TACATGAGATATAGATAAATGATTTG
36903967 GAAATTATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.40, C:0.06, G:0.17, T:0.37
Consensus pattern (26 bp):
TACATGAGATATAGATAAATGATTTG
Found at i:36905971 original size:40 final size:40
Alignment explanation
Indices: 36905892--36906059 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
36905882 CGGATGATAA
* * **
36905892 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
* * * * *
36905932 CCGGGCTATGTCCCGAAGGCATTTATTCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-CTATAT
*
36905972 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
* * *
36906012 CCGGGCAAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
*
36906052 TC-GGCTAA
1 CCGGGCTAA
36906060 ATCCTGAAGA
Statistics
Matches: 107, Mismatches: 19, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
39 7 0.07
40 98 0.92
41 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
Found at i:36906050 original size:80 final size:80
Alignment explanation
Indices: 36905892--36906059 Score: 223
Period size: 80 Copynumber: 2.1 Consensus size: 80
36905882 CGGATGATAA
* * * * *
36905892 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCAAAGACCCGAAGGCATTTA
* *
36905957 TTCTAGTGATTATAT
66 TGCGAGTGATTATAT
* *
36905972 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCAAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCAAAGACCCGAAGGCATTTA
36906037 TGCGAGTTG-TTATAT
66 TGCGAG-TGATTATAT
*
36906052 TC-GGCTAA
1 CCGGGCTAA
36906060 ATCCTGAAGA
Statistics
Matches: 77, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
79 6 0.08
80 69 0.90
81 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCAAAGACCCGAAGGCATTTA
TGCGAGTGATTATAT
Found at i:36906336 original size:22 final size:22
Alignment explanation
Indices: 36906296--36906337 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
36906286 GAATGTGCAT
*
36906296 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
36906318 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
36906338 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:36908575 original size:27 final size:27
Alignment explanation
Indices: 36908545--36908722 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
36908535 ATATTGAGTC
* *
36908545 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
36908572 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
36908599 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* ** *
36908627 CGCACACTTAGTG-TCGCATGGTCAATT
1 CGCACACTTAGTGCT-ACATAATCAACT
* **
36908654 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
36908681 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
36908708 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36908723 GTACAATTTA
Statistics
Matches: 128, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:36908686 original size:82 final size:81
Alignment explanation
Indices: 36908566--36908720 Score: 231
Period size: 82 Copynumber: 1.9 Consensus size: 81
36908556 TGCTATATAA
* *
36908566 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
36908631 CACTTAGTGTCGCATGG
65 CACTTAGTGTCGCATGG
* * **
36908648 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
36908712 CACTTAGTG
65 CACTTAGTG
36908721 CTGTACAATT
Statistics
Matches: 66, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.23
82 51 0.77
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGTCGCATGG
Found at i:36909216 original size:2 final size:2
Alignment explanation
Indices: 36909209--36909242 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
36909199 CATACTTGTG
* *
36909209 TA TA TA TA CA TA TA TA TG TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
36909243 CTTCGGAATG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (2 bp):
TA
Found at i:36916714 original size:26 final size:27
Alignment explanation
Indices: 36916568--36916743 Score: 167
Period size: 27 Copynumber: 6.5 Consensus size: 27
36916558 ATATTGAGTC
* * * * *
36916568 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCAACATAGTCAAAT
* * * *
36916595 CGCACACTCAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCAACATAGTCAAAT
*
36916622 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCAACATAGTCAAA-T
* * *
36916650 CGCACACTTAGTGTC-GCATGGTCAATT
1 CGCACACTTAGTG-CAACATAGTCAAAT
* * *
36916677 CGCACACTTAGTGCATCATATTC-ATT
1 CGCACACTTAGTGCAACATAGTCAAAT
*
36916703 TGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCAACATAGTCAAAT
36916730 CGCACACTTAGTGC
1 CGCACACTTAGTGC
36916744 TGTACAATTT
Statistics
Matches: 128, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
26 24 0.19
27 81 0.63
28 22 0.17
29 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCAACATAGTCAAAT
Found at i:36916727 original size:53 final size:53
Alignment explanation
Indices: 36916568--36916744 Score: 187
Period size: 55 Copynumber: 3.3 Consensus size: 53
36916558 ATATTGAGTC
* * * * * *
36916568 CGCACACTCAGTGCTATATAATCAACTCGCACACTCAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGC-ACATAGTCAAAT
* * *
36916622 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGTCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTG-CACATAGTCAAAT
* * *
36916677 CGCACACTTAGTGC-ATCATATTC-ATTTGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAGTCAACTCGCACACTTAGTGC-ACATAGTCAAAT
36916730 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36916745 GTACAATTTA
Statistics
Matches: 103, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
52 1 0.01
53 37 0.36
54 21 0.20
55 43 0.42
56 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (53 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCACATAGTCAAAT
Found at i:36924101 original size:25 final size:25
Alignment explanation
Indices: 36924073--36924128 Score: 103
Period size: 25 Copynumber: 2.2 Consensus size: 25
36924063 ATTTACTCAA
*
36924073 ATTTGTGGAATGTATGTTTGAGTGC
1 ATTTGTAGAATGTATGTTTGAGTGC
36924098 ATTTGTAGAATGTATGTTTGAGTGC
1 ATTTGTAGAATGTATGTTTGAGTGC
36924123 ATTTGT
1 ATTTGT
36924129 TTTAAAATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.21, C:0.04, G:0.29, T:0.46
Consensus pattern (25 bp):
ATTTGTAGAATGTATGTTTGAGTGC
Found at i:36929758 original size:27 final size:27
Alignment explanation
Indices: 36929728--36930029 Score: 340
Period size: 27 Copynumber: 11.2 Consensus size: 27
36929718 TTTAGTTTAC
* **
36929728 AAAATTACTGAAATACCCTTGGT-TTGT
1 AAAATTACCGAAATACCCTT-GTAGGGT
*
36929755 AAAATTACCAAAATACCCTTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* *
36929782 AGAATTACCGAAATACCCCTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* * * *
36929809 AGAATTACTGAAATACCCTTATAAGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* * *
36929836 AGAATAACCAAAATACCCTTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
*
36929863 AGAATTACCGAAATATCCC-TGTAGGGT
1 AAAATTACCGAAATA-CCCTTGTAGGGT
* *
36929890 AGAATTACCGAAATACCCCTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* *
36929917 AGAATTACCGAAATACCCCTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* * *
36929944 AGAATTACTGAAATACCCTTATAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
*
36929971 AGAAA-TACCGAAATACCCCTGTAGGGT
1 A-AAATTACCGAAATACCCTTGTAGGGT
* *
36929998 AAAATTACCGAGATACCCTTGTGGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
36930025 AAAAT
1 AAAAT
36930030 CACCATTTTG
Statistics
Matches: 242, Mismatches: 28, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
26 8 0.03
27 229 0.95
28 5 0.02
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (27 bp):
AAAATTACCGAAATACCCTTGTAGGGT
Found at i:36929795 original size:54 final size:54
Alignment explanation
Indices: 36929730--36930025 Score: 387
Period size: 54 Copynumber: 5.5 Consensus size: 54
36929720 TAGTTTACAA
* ** * * *
36929730 AATTACTGAAATACCCTTGGT-TTGTAAAATTACCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTT-GTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * * *
36929784 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTATAAGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
36929838 AATAACCAAAATACCCTTGTAGGGTAGAATTACCGAAATATCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
*
36929892 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * *
36929946 AATTACTGAAATACCCTTATAGGGTAGAAATACCGAAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* *
36930000 AATTACCGAGATACCCTTGTGGGGTA
1 AATTACCGAAATACCCTTGTAGGGTA
36930026 AAATCACCAT
Statistics
Matches: 211, Mismatches: 30, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
53 2 0.01
54 209 0.99
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (54 bp):
AATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
Found at i:36929865 original size:81 final size:81
Alignment explanation
Indices: 36929753--36930025 Score: 393
Period size: 81 Copynumber: 3.4 Consensus size: 81
36929743 CCCTTGGTTT
*
36929753 GTAAAATTACCAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACT
1 GTAAAATTACCAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACC
* * *
36929818 GAAATACCCTTATAAG
66 GAAATACCCCTGTAGG
* * *
36929834 GTAGAATAACCAAAATACCCTTGTAGGGTAGAATTACCGAAATATCCCTGTAGGGTAGAATTACC
1 GTAAAATTACCAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACC
36929899 GAAATACCCCTGTAGG
66 GAAATACCCCTGTAGG
* * * * * * *
36929915 GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTATAGGGTAGAAATACC
1 GTAAAATTACCAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACC
36929980 GAAATACCCCTGTAGG
66 GAAATACCCCTGTAGG
* * *
36929996 GTAAAATTACCGAGATACCCTTGTGGGGTA
1 GTAAAATTACCAAAATACCCTTGTAGGGTA
36930026 AAATCACCAT
Statistics
Matches: 173, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 173 1.00
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.25
Consensus pattern (81 bp):
GTAAAATTACCAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACC
GAAATACCCCTGTAGG
Found at i:36930337 original size:21 final size:21
Alignment explanation
Indices: 36930311--36930361 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
36930301 ATTTTGATAT
* *
36930311 ACATGATATGACGTGATATGC
1 ACATGATATGACATGAGATGC
**
36930332 ACATGATATGTTATGAGATGC
1 ACATGATATGACATGAGATGC
36930353 ACATGATAT
1 ACATGATAT
36930362 ACTCATTATA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.31
Consensus pattern (21 bp):
ACATGATATGACATGAGATGC
Found at i:36930340 original size:11 final size:11
Alignment explanation
Indices: 36930311--36930375 Score: 53
Period size: 11 Copynumber: 6.1 Consensus size: 11
36930301 ATTTTGATAT
36930311 ACATGATATG-
1 ACATGATATGC
*
36930321 ACGTGATATGC
1 ACATGATATGC
36930332 ACATGATATG-
1 ACATGATATGC
** *
36930342 TTATGAGATGC
1 ACATGATATGC
*
36930353 ACATGATATAC
1 ACATGATATGC
* *
36930364 TCATTATATGC
1 ACATGATATGC
36930375 A
1 A
36930376 GGGGTTGGGT
Statistics
Matches: 40, Mismatches: 13, Indels: 3
0.71 0.23 0.05
Matches are distributed among these distances:
10 16 0.40
11 24 0.60
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.32
Consensus pattern (11 bp):
ACATGATATGC
Found at i:36930441 original size:25 final size:25
Alignment explanation
Indices: 36930407--36930476 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
36930397 AGGAAGTGCT
*
36930407 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
36930432 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
36930457 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
36930477 ATTAAAAGAG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:36930489 original size:24 final size:24
Alignment explanation
Indices: 36930406--36930489 Score: 107
Period size: 25 Copynumber: 3.4 Consensus size: 24
36930396 GAGGAAGTGC
*
36930406 TAAAAGGGCTTTGCCCCAGTTTACC
1 TAAAAGGGCTTTGCCCCAGTTTA-T
*
36930431 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTTTGCCCCAGTTTAT
*
36930455 CAAAAAGGGCTTTGCCCCAG-TTAT
1 -TAAAAGGGCTTTGCCCCAGTTTAT
36930479 TAAAAGAGGCT
1 TAAAAG-GGCT
36930490 AAGCCTCCAG
Statistics
Matches: 53, Mismatches: 4, Indels: 5
0.85 0.06 0.08
Matches are distributed among these distances:
23 5 0.09
24 8 0.15
25 40 0.75
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.26
Consensus pattern (24 bp):
TAAAAGGGCTTTGCCCCAGTTTAT
Found at i:36930500 original size:50 final size:50
Alignment explanation
Indices: 36930407--36930501 Score: 122
Period size: 50 Copynumber: 1.9 Consensus size: 50
36930397 AGGAAGTGCT
**
36930407 AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTAAGCCCCAGTTTATCA
**
36930457 AAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAAGCCTCCAGTT
1 AAAAGGGCTTTGCCCCAGTTTACCGAAAAG-GGCTAAGCC-CCAGTT
36930502 ATATGATAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
48 5 0.13
49 10 0.26
50 24 0.62
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.25
Consensus pattern (50 bp):
AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTAAGCCCCAGTTTATCA
Found at i:36930754 original size:6 final size:6
Alignment explanation
Indices: 36930743--36930829 Score: 79
Period size: 6 Copynumber: 14.3 Consensus size: 6
36930733 TTGCATACAC
* * *
36930743 ATTCTG ATTCTG ATTCTG -TCACCTA ATTTTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
36930792 ATTCTA ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
36930830 AATGTTTCTT
Statistics
Matches: 64, Mismatches: 12, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
5 2 0.03
6 58 0.91
7 3 0.05
8 1 0.02
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.51
Consensus pattern (6 bp):
ATTCTG
Found at i:36936465 original size:34 final size:34
Alignment explanation
Indices: 36936396--36936482 Score: 104
Period size: 34 Copynumber: 2.6 Consensus size: 34
36936386 CAGCGCAAAA
* * **
36936396 CAGTGTGGGCCTAAGTCCATATCAGTGGCAATAT
1 CAGTGTGGGCCTTAGCCCATATCAGTAACAATAT
*
36936430 CAGTGTGGGCCTTAGCCCATTAT-AGTAACAGTAT
1 CAGTGTGGGCCTTAGCCCA-TATCAGTAACAATAT
*
36936464 CAGTATGGGCCTTAGCCCA
1 CAGTGTGGGCCTTAGCCCA
36936483 ATTCAATACA
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
34 43 0.93
35 3 0.07
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (34 bp):
CAGTGTGGGCCTTAGCCCATATCAGTAACAATAT
Found at i:36944249 original size:34 final size:34
Alignment explanation
Indices: 36944226--36944292 Score: 109
Period size: 34 Copynumber: 2.0 Consensus size: 34
36944216 ATATTAGTGG
36944226 CAATATCAGTGTGGGCCTTAGCCCATTACAGTAA
1 CAATATCAGTGTGGGCCTTAGCCCATTACAGTAA
*
36944260 CAGTATCAGTGTGGGCCTTAGCCCAATT-CAGTA
1 CAATATCAGTGTGGGCCTTAGCCC-ATTACAGTA
36944293 CAGTATTAGA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
34 28 0.90
35 3 0.10
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (34 bp):
CAATATCAGTGTGGGCCTTAGCCCATTACAGTAA
Found at i:36948673 original size:39 final size:40
Alignment explanation
Indices: 36948556--36948815 Score: 313
Period size: 40 Copynumber: 6.6 Consensus size: 40
36948546 GCTCCTCGTT
* *
36948556 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGT-ATCTCGCA
* *
36948596 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCA
*
36948636 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCA
*
36948675 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCA
* *
36948714 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCA
* *
36948754 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGT-ATC-TCGCA
36948795 C-AA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
36948816 AGACATCATT
Statistics
Matches: 198, Mismatches: 14, Indels: 17
0.86 0.06 0.07
Matches are distributed among these distances:
39 92 0.46
40 96 0.48
41 10 0.05
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCA
Found at i:36948802 original size:118 final size:119
Alignment explanation
Indices: 36948556--36948815 Score: 363
Period size: 118 Copynumber: 2.2 Consensus size: 119
36948546 GCTCCTCGTT
* * *
36948556 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TTGCACAAATGCCTTCGGGACTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTCGGGACTTAACCC
*
36948619 GGATTTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
64 GGATTTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTAGCA
36948675 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
36948739 ATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCA
66 ATTTAGTAACTCGCACAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATC-TAGCA
36948795 C-AA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
36948816 AGACATCATT
Statistics
Matches: 128, Mismatches: 6, Indels: 14
0.86 0.04 0.09
Matches are distributed among these distances:
117 2 0.02
118 79 0.62
119 38 0.30
120 9 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (119 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGG
ATTTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTAGCA
Found at i:36955887 original size:40 final size:40
Alignment explanation
Indices: 36955843--36956104 Score: 258
Period size: 40 Copynumber: 6.6 Consensus size: 40
36955833 GCTCCTCGTT
* *
36955843 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCA
* *
36955883 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAATTCGCA
*
36955923 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAAT-TCGCA
*
36955962 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAAT-TCGCA
* *
36956001 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAATTCGCA
* * * * *
36956041 CAAATGCCTTC-GGATCTTAGTCCGGATATTGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGT-AATTCGCA
36956082 C-AA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
36956105 ACATCATTCA
Statistics
Matches: 192, Mismatches: 18, Indels: 25
0.82 0.08 0.11
Matches are distributed among these distances:
38 1 0.01
39 90 0.47
40 92 0.48
41 9 0.05
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCA
Found at i:36955960 original size:39 final size:40
Alignment explanation
Indices: 36955843--36956105 Score: 310
Period size: 39 Copynumber: 6.7 Consensus size: 40
36955833 GCTCCTCGTT
* * *
36955843 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCACA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
36955883 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
36955923 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
36955962 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* * *
36956001 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
36956041 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
36956082 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
36956106 CATCATTCAA
Statistics
Matches: 200, Mismatches: 15, Indels: 17
0.86 0.06 0.07
Matches are distributed among these distances:
39 95 0.47
40 95 0.47
41 10 0.05
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:36956105 original size:79 final size:80
Alignment explanation
Indices: 36955843--36956105 Score: 319
Period size: 79 Copynumber: 3.3 Consensus size: 80
36955833 GCTCCTCGTT
* * * *
36955843 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCACACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTC-GGACTTAGCCCG
36955907 GAT-TTAGTAAC-TCGCA
64 GATATTAGT-ACTTCGCA
* * *
36955923 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGA
36955987 -ATTAGTA-TCTCGCA
66 TATTAGTACT-TCGCA
* *
36956001 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGA-CTTAGCCCGG
*
36956066 ATATT-GTCACTTAGCA
65 ATATTAGT-ACTTCGCA
36956082 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
36956106 CATCATTCAA
Statistics
Matches: 160, Mismatches: 14, Indels: 19
0.83 0.07 0.10
Matches are distributed among these distances:
77 1 0.01
78 36 0.22
79 84 0.52
80 29 0.18
81 9 0.06
82 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGA
TATTAGTACTTCGCA
Found at i:36958935 original size:17 final size:16
Alignment explanation
Indices: 36958913--36958945 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
36958903 TTGTCTCAAG
36958913 AAAAAAACTAATTAGT
1 AAAAAAACTAATTAGT
*
36958929 AAAAAAACTGATTAGT
1 AAAAAAACTAATTAGT
36958945 A
1 A
36958946 CTTGGGCCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.61, C:0.06, G:0.09, T:0.24
Consensus pattern (16 bp):
AAAAAAACTAATTAGT
Done.