Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 117 of 356
Found at i:37311486 original size:3 final size:3
Alignment explanation
Indices: 37311478--37311511 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
37311468 TTGCTTTTCA
37311478 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
37311512 CACTGTTAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:37312382 original size:29 final size:29
Alignment explanation
Indices: 37312340--37312400 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
37312330 AGTCTTATGC
37312340 ATCACATTCTATTAACTGACATGCAAGCA
1 ATCACATTCTATTAACTGACATGCAAGCA
37312369 ATCACATTCTATTAACTGACATGCAAGCA
1 ATCACATTCTATTAACTGACATGCAAGCA
37312398 ATC
1 ATC
37312401 TTTAATTACA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.38, C:0.25, G:0.10, T:0.28
Consensus pattern (29 bp):
ATCACATTCTATTAACTGACATGCAAGCA
Found at i:37320695 original size:40 final size:40
Alignment explanation
Indices: 37320632--37320856 Score: 267
Period size: 40 Copynumber: 5.7 Consensus size: 40
37320622 TCGAAATGTT
* * * * * *
37320632 AACAGGGGCATGTAAGTGTAATCAAGGCTACCGAAGTACG
1 AACAAGGGCACGTATGTGCAATCAAGGGTACCGAAGTACA
* *
37320672 AACAAGGGCACGTATGTGCAATCAAGGGTACCAAAGTACG
1 AACAAGGGCACGTATGTGCAATCAAGGGTACCGAAGTACA
*
37320712 AACAGGGGCAC--ATGTGCAATC-AGGTGTACCGAAGTACA
1 AACAAGGGCACGTATGTGCAATCAAGG-GTACCGAAGTACA
* * *
37320750 AACAGGGGCACGTATGTGTAATCAGGGGTACCGAAGTACA
1 AACAAGGGCACGTATGTGCAATCAAGGGTACCGAAGTACA
* * **
37320790 AACAAGGGCACATATGTGCAATCAGGGGTATTGAAGTACA
1 AACAAGGGCACGTATGTGCAATCAAGGGTACCGAAGTACA
*
37320830 AATAAGGGCACGTATGTGCAATCAAGG
1 AACAAGGGCACGTATGTGCAATCAAGG
37320857 TATAATTTAC
Statistics
Matches: 162, Mismatches: 19, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
37 3 0.02
38 32 0.20
40 125 0.77
41 2 0.01
ACGTcount: A:0.36, C:0.18, G:0.29, T:0.17
Consensus pattern (40 bp):
AACAAGGGCACGTATGTGCAATCAAGGGTACCGAAGTACA
Found at i:37320763 original size:78 final size:79
Alignment explanation
Indices: 37320651--37320856 Score: 279
Period size: 78 Copynumber: 2.6 Consensus size: 79
37320641 ATGTAAGTGT
* * * *
37320651 AATCAAGGCTACCGAAGTACGAACAAGGGCACGTATGTGCAATCAAGGGTACCAAAGTACGAACA
1 AATCAGGGGTACCGAAGTACAAACAAGGGCACGTATGTGCAATCAAGGGTACCAAAGTACAAACA
*
37320716 GGGGCAC-ATGTGC
66 AGGGCACAATGTGC
* * * * *
37320729 AATCAGGTGTACCGAAGTACAAACAGGGGCACGTATGTGTAATCAGGGGTACCGAAGTACAAACA
1 AATCAGGGGTACCGAAGTACAAACAAGGGCACGTATGTGCAATCAAGGGTACCAAAGTACAAACA
37320794 AGGGCACATATGTGC
66 AGGGCACA-ATGTGC
** *
37320809 AATCAGGGGTATTGAAGTACAAATAAGGGCACGTATGTGCAATCAAGG
1 AATCAGGGGTACCGAAGTACAAACAAGGGCACGTATGTGCAATCAAGG
37320857 TATAATTTAC
Statistics
Matches: 109, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
78 62 0.57
80 47 0.43
ACGTcount: A:0.36, C:0.18, G:0.29, T:0.17
Consensus pattern (79 bp):
AATCAGGGGTACCGAAGTACAAACAAGGGCACGTATGTGCAATCAAGGGTACCAAAGTACAAACA
AGGGCACAATGTGC
Found at i:37320840 original size:118 final size:119
Alignment explanation
Indices: 37320632--37320853 Score: 311
Period size: 118 Copynumber: 1.9 Consensus size: 119
37320622 TCGAAATGTT
* * *
37320632 AACAGGGGCATGTAAGTGTAATCAAGGCTACCGAAGTACGAACAAGGGCACGTATGTGCAATCAA
1 AACAGGGGCACGTAAGTGTAATCAAGGCTACCGAAGTACAAACAAGGGCACATATGTGCAATCAA
* *
37320697 GGGTACCAAAGTACGAACAGGGGCAC-ATGTGCAATCAGGTGTACCGAAGTACA
66 GGGTACCAAAGTACAAACAAGGGCACGATGTGCAATCAGGTGTACCGAAGTACA
* * * *
37320750 AACAGGGGCACGTATGTGTAATCAGGGGTACCGAAGTACAAACAAGGGCACATATGTGCAATCAG
1 AACAGGGGCACGTAAGTGTAATCAAGGCTACCGAAGTACAAACAAGGGCACATATGTGCAATCAA
*** *
37320815 GGGTATTGAAGTACAAATAAGGGCACGTATGTGCAATCA
66 GGGTACCAAAGTACAAACAAGGGCACG-ATGTGCAATCA
37320854 AGGTATAATT
Statistics
Matches: 89, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
118 78 0.88
120 11 0.12
ACGTcount: A:0.36, C:0.18, G:0.29, T:0.18
Consensus pattern (119 bp):
AACAGGGGCACGTAAGTGTAATCAAGGCTACCGAAGTACAAACAAGGGCACATATGTGCAATCAA
GGGTACCAAAGTACAAACAAGGGCACGATGTGCAATCAGGTGTACCGAAGTACA
Found at i:37321032 original size:18 final size:18
Alignment explanation
Indices: 37321001--37321035 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
37320991 ACTTAGTCGA
* *
37321001 TTTCTTCTTTCCCTTAGC
1 TTTCTACTTCCCCTTAGC
37321019 TTTCTACTTCCCCTTAG
1 TTTCTACTTCCCCTTAG
37321036 AGGATGAGGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.09, C:0.34, G:0.06, T:0.51
Consensus pattern (18 bp):
TTTCTACTTCCCCTTAGC
Found at i:37331988 original size:20 final size:20
Alignment explanation
Indices: 37331963--37332010 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
37331953 ATTTTGATAT
*
37331963 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATAC
37331983 ACATGATATGTATGATATAC
1 ACATGATATGTATGATATAC
37332003 ACATGATA
1 ACATGATA
37332011 AATTCATATG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.40, C:0.10, G:0.17, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATAC
Found at i:37332142 original size:25 final size:26
Alignment explanation
Indices: 37332058--37332129 Score: 101
Period size: 26 Copynumber: 2.8 Consensus size: 26
37332048 GAGGAAGTGC
* * *
37332058 AAAAGGGC-TATGCCCCAGTTTACCG
1 AAAAGGGCTTTTGCCCCAGTTTATCA
*
37332083 AAAATGGCTTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTTGCCCCAGTTTATCA
37332109 AAAAGGGCTTTTGCCCCAGTT
1 AAAAGGGCTTTTGCCCCAGTT
37332130 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
25 7 0.17
26 34 0.83
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTTTGCCCCAGTTTATCA
Found at i:37332387 original size:31 final size:31
Alignment explanation
Indices: 37332349--37332432 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
37332339 TTGTTTCAGT
37332349 AAAGGCTTCGACCCAGTGATATGAATAATGA
1 AAAGGCTTCGACCCAGTGATATGAATAATGA
*
37332380 AAAGGCTTCGACCCAGTGATATGAATAATGT
1 AAAGGCTTCGACCCAGTGATATGAATAATGA
*
37332411 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGACCCAGTGATATG
37332433 CTGAGATTGA
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
30 5 0.10
31 46 0.90
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGACCCAGTGATATGAATAATGA
Found at i:37340060 original size:20 final size:20
Alignment explanation
Indices: 37340035--37340082 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
37340025 ATTTTGATAT
37340035 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
37340055 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
37340075 ACATGATA
1 ACATGATA
37340083 AATTCATATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.38, C:0.10, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:37340062 original size:11 final size:11
Alignment explanation
Indices: 37340046--37340082 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
37340036 CATGATATGT
37340046 ATGATATGCAC
1 ATGATATGCAC
*
37340057 ATGATATG--T
1 ATGATATGCAC
37340066 ATGATATGCAC
1 ATGATATGCAC
37340077 ATGATA
1 ATGATA
37340083 AATTCATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
9 8 0.36
11 14 0.64
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:37340203 original size:25 final size:26
Alignment explanation
Indices: 37340130--37340201 Score: 119
Period size: 26 Copynumber: 2.8 Consensus size: 26
37340120 GAGGAAGTGC
* *
37340130 AAAAGGGC-TATGCCCCAGTTTACCA
1 AAAAGGGCTTTTGCCCCAGTTTATCA
37340155 AAAAGGGCTTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTTGCCCCAGTTTATCA
37340181 AAAAGGGCTTTTGCCCCAGTT
1 AAAAGGGCTTTTGCCCCAGTT
37340202 ATTAAAAGAG
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
25 8 0.18
26 36 0.82
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
AAAAGGGCTTTTGCCCCAGTTTATCA
Found at i:37340214 original size:25 final size:26
Alignment explanation
Indices: 37340140--37340214 Score: 93
Period size: 26 Copynumber: 2.9 Consensus size: 26
37340130 AAAAGGGCTA
*
37340140 TGCCCCAGTTTACCAAAA-AGGGCTTT
1 TGCCCCAGTTTATCAAAAGA-GGCTTT
37340166 TGCCCCAGTTTATCAAAA-AGGGCTTT
1 TGCCCCAGTTTATCAAAAGA-GGCTTT
*
37340192 TGCCCCAG-TTATTAAAAGAGGCT
1 TGCCCCAGTTTATCAAAAGAGGCT
37340215 AGGCCTCCAG
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
25 12 0.26
26 34 0.74
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (26 bp):
TGCCCCAGTTTATCAAAAGAGGCTTT
Found at i:37340459 original size:31 final size:31
Alignment explanation
Indices: 37340421--37340499 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 31
37340411 TTGTTTCAGT
*
37340421 AAAGGCTTCAGCCCAGTGACATGAATAATGA
1 AAAGGCTTCGGCCCAGTGACATGAATAATGA
* * * *
37340452 AAAGGCTTCGGCCTAGTTATATGAATAATGT
1 AAAGGCTTCGGCCCAGTGACATGAATAATGA
37340483 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
37340500 ATATGCTGAG
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGACATGAATAATGA
Found at i:37344640 original size:49 final size:49
Alignment explanation
Indices: 37344577--37344707 Score: 167
Period size: 49 Copynumber: 2.7 Consensus size: 49
37344567 ACATTAAAGT
* *
37344577 CGATGCCGTGTCCTAGACAGGTTTTACACTGACTTTCATATATCAAG-GC
1 CGATGCCATGTCCTAGACAGGTCTTACACTGACTTTCATATATC-AGTGC
* * * * *
37344626 CGATGCCATCTCCTAGACAAGTCTTACACT-ATCTTTCATCTATCGGTGT
1 CGATGCCATGTCCTAGACAGGTCTTACACTGA-CTTTCATATATCAGTGC
37344675 CGATGCCATGTCCTAGACAGGTCTTACACTGAC
1 CGATGCCATGTCCTAGACAGGTCTTACACTGAC
37344708 ACACAACAAG
Statistics
Matches: 70, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
48 2 0.03
49 67 0.96
50 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (49 bp):
CGATGCCATGTCCTAGACAGGTCTTACACTGACTTTCATATATCAGTGC
Found at i:37344862 original size:46 final size:47
Alignment explanation
Indices: 37344725--37344882 Score: 178
Period size: 46 Copynumber: 3.4 Consensus size: 47
37344715 AAGCTAACAC
* * * *
37344725 CATGTCCCAGACAGGTCTTACACTAGCT-TGTATATCCTGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCT-TATA-ACAGTGGCCGATG
* ** *
37344773 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAT-GCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTTATAACAGTGGCCGATG
* *
37344819 CATGTCACAGACATGTCTTACACTGGCTCTTATAAC-GTGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTTATAACAGTGGCCGATG
*
37344865 CATGTCCCAGATATGTCT
1 CATGTCCCAGACATGTCT
37344883 ACATTGGCTC
Statistics
Matches: 93, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
45 1 0.01
46 61 0.66
47 1 0.01
48 29 0.31
49 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.28
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTTATAACAGTGGCCGATG
Found at i:37355093 original size:313 final size:312
Alignment explanation
Indices: 37354480--37355099 Score: 1159
Period size: 312 Copynumber: 2.0 Consensus size: 312
37354470 GGACAAAAAT
*
37354480 GGGCATACATGGAAATTTTTGAAAGGTTAGTAAGGAAGGGCATTTTAGTCATTTGGTAATAAAAT
1 GGGCATACATGGAAAATTTTGAAAGGTTAGTAAGGAAGGGCATTTTAGTCATTTGGTAATAAAAT
*
37354545 TAGTAAAAAGGGAAAAGGAAGCAAAATTCAGCAATATTCTTCTCCATGGCTGCCGAAAATTGAAG
66 TAATAAAAAGGGAAAAGGAAGCAAAATTCAGCAATATTCTTCTCCATGGCTGCCGAAAATTGAAG
37354610 GGTCTCCATAGCTAGGGTTTTCAACATTTTCAAGCTTAATAACCCCGAGGAACCAATTCAGAGGT
131 GGTCTCCATAGCTAGGGTTTTCAACATTTTCAAGCTTAATAACCCCGAGGAACCAATTCAGAGGT
37354675 TGACCGTGAAAAATGAAAGGTTTCGGAATAACCGAAATACAAAACCGAAACAATTACTAGGTAAG
196 TGACCGTGAAAAATGAAAGGTTTCGGAATAACCGAAATACAAAACCGAAACAATTACTAGGTAAG
* *
37354740 TTCGTATAACTTGAAGTATACTTTAAATATACTAGAAAATGCATATTGAAAG
261 TTCGTATAACTCGAAGTAAACTTTAAATATACTAGAAAATGCATATTGAAAG
*
37354792 GGGCATACATGGAAAATTTTGAAAGGTTAGTAAGGAAGGGCATTTTGGTCATTTGGTAATAAAAT
1 GGGCATACATGGAAAATTTTGAAAGGTTAGTAAGGAAGGGCATTTTAGTCATTTGGTAATAAAAT
37354857 TAATAAAAAGGGAAAAGGAAGCAAAATTCAGCAATATTCTTCTCCATGGCTGCCGAAAATTGAAG
66 TAATAAAAAGGGAAAAGGAAGCAAAATTCAGCAATATTCTTCTCCATGGCTGCCGAAAATTGAAG
*
37354922 GGTCTCCATAGCTAGGGTTTTCAACATTTTCAAGCTTAATAACCCCGAGGAACCAATTCCGGAGG
131 GGTCTCCATAGCTAGGGTTTTCAACATTTTCAAGCTTAATAACCCCGAGGAACCAATT-CAGAGG
*
37354987 TTGACCGTGAAAAATGAAAGGTTTCGGAATAACTGAAATACAAAACCGAAACAATTACTAGGTAA
195 TTGACCGTGAAAAATGAAAGGTTTCGGAATAACCGAAATACAAAACCGAAACAATTACTAGGTAA
*
37355052 GTTCGTATAACTCGAAGTAAACTTTAAATATACTTGAAAATGCATATT
260 GTTCGTATAACTCGAAGTAAACTTTAAATATACTAGAAAATGCATATT
37355100 CTTAAATTTA
Statistics
Matches: 299, Mismatches: 8, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
312 185 0.62
313 114 0.38
ACGTcount: A:0.39, C:0.14, G:0.20, T:0.27
Consensus pattern (312 bp):
GGGCATACATGGAAAATTTTGAAAGGTTAGTAAGGAAGGGCATTTTAGTCATTTGGTAATAAAAT
TAATAAAAAGGGAAAAGGAAGCAAAATTCAGCAATATTCTTCTCCATGGCTGCCGAAAATTGAAG
GGTCTCCATAGCTAGGGTTTTCAACATTTTCAAGCTTAATAACCCCGAGGAACCAATTCAGAGGT
TGACCGTGAAAAATGAAAGGTTTCGGAATAACCGAAATACAAAACCGAAACAATTACTAGGTAAG
TTCGTATAACTCGAAGTAAACTTTAAATATACTAGAAAATGCATATTGAAAG
Found at i:37356766 original size:41 final size:41
Alignment explanation
Indices: 37356710--37356787 Score: 104
Period size: 41 Copynumber: 1.9 Consensus size: 41
37356700 ATTTTTGGAC
* *
37356710 ACGGGCAACGACACGGGCGTGT-CTAGGCCATGTGAAGGAA
1 ACGGGCAACGACACGGGCATGTGCTAGGCAATGTGAAGGAA
* *
37356750 ACGGGCCAAGGACACGGGCATGTGCTCGGCAATGTGAA
1 ACGGG-CAACGACACGGGCATGTGCTAGGCAATGTGAA
37356788 AACCTCTATA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 5 0.16
41 15 0.47
42 12 0.38
ACGTcount: A:0.27, C:0.23, G:0.37, T:0.13
Consensus pattern (41 bp):
ACGGGCAACGACACGGGCATGTGCTAGGCAATGTGAAGGAA
Found at i:37358863 original size:16 final size:17
Alignment explanation
Indices: 37358831--37358863 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
37358821 TCTCTCAAGT
37358831 CACACGGGCGTGTGTGAC
1 CACACGGGCG-GTGTGAC
37358849 CACACGGGC-GTGTGA
1 CACACGGGCGGTGTGA
37358864 ATCTCCAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.18, C:0.27, G:0.39, T:0.15
Consensus pattern (17 bp):
CACACGGGCGGTGTGAC
Found at i:37363520 original size:55 final size:54
Alignment explanation
Indices: 37363425--37363574 Score: 149
Period size: 55 Copynumber: 2.8 Consensus size: 54
37363415 CTACTTTGTT
* ** * *
37363425 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAATGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * * * ** *
37363479 GCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAATGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* *
37363534 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
37363575 GGCTCAATAT
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 37 0.47
55 42 0.53
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:37363537 original size:27 final size:27
Alignment explanation
Indices: 37363397--37363574 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
37363387 TAAATTGTAC
37363397 AGCACTAAGTGTGCGATTCT-ACTT-TGT
1 AGCACTAAGTGTGCGATT-TGA-TTATGT
* ** *
37363424 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
37363450 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* * *
37363478 GGCACTAAGTGTGCGGGTTTGACTATGT
1 AGCACTAAGTGTGC-GATTTGATTATGT
*
37363506 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* * * *
37363533 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
37363560 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37363575 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 97 0.80
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:37363538 original size:82 final size:81
Alignment explanation
Indices: 37363398--37363553 Score: 190
Period size: 82 Copynumber: 1.9 Consensus size: 81
37363388 AAATTGTACA
* * * *
37363398 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
37363463 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
37363479 GCACTAAGTGTGCGGGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAA
1 GCACTAAGTGTGC-GATTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAA
*
37363542 TGTGCGAGTTGA
63 TGTGCGAATTGA
37363554 TTATATAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:37377005 original size:41 final size:41
Alignment explanation
Indices: 37376948--37377048 Score: 175
Period size: 41 Copynumber: 2.4 Consensus size: 41
37376938 TACTCGAATG
37376948 ATATCCGGGCTAAGTCCTGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCTGAAGGCTTTTGTGCTAAGCGACT
*
37376989 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCTGAAGGCTTTTGTGCTAAGCGACT
*
37377030 ATATCCGGACTAAGATCCT
1 ATATCCGGGCTAAG-TCCT
37377049 TGATGAATCT
Statistics
Matches: 56, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
41 53 0.95
42 3 0.05
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.28
Consensus pattern (41 bp):
ATATCCGGGCTAAGTCCTGAAGGCTTTTGTGCTAAGCGACT
Found at i:37384078 original size:24 final size:25
Alignment explanation
Indices: 37384015--37384078 Score: 58
Period size: 26 Copynumber: 2.6 Consensus size: 25
37384005 TATTGATTCT
* * *
37384015 TAGCTCGTATGAGCTTACCGTTATT
1 TAGCTCGAAAGAGCTTACCGTTATA
* * *
37384040 TCATCTCGGAGGAGCTTACCGTT-TA
1 T-AGCTCGAAAGAGCTTACCGTTATA
37384065 TAGCTCGAAAGAGC
1 TAGCTCGAAAGAGC
37384079 ATACATGTAT
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
24 10 0.32
25 3 0.10
26 18 0.58
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.31
Consensus pattern (25 bp):
TAGCTCGAAAGAGCTTACCGTTATA
Found at i:37388052 original size:28 final size:28
Alignment explanation
Indices: 37388021--37388076 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
37388011 AAAATACATG
37388021 TTAGAACCAGATCGAGACCAAATTCGGT
1 TTAGAACCAGATCGAGACCAAATTCGGT
37388049 TTAGAACCAGATCGAGACCAAATTCGGT
1 TTAGAACCAGATCGAGACCAAATTCGGT
37388077 ATTCTAGAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.21
Consensus pattern (28 bp):
TTAGAACCAGATCGAGACCAAATTCGGT
Found at i:37388820 original size:24 final size:24
Alignment explanation
Indices: 37388788--37388834 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
37388778 ATATAGTCTA
37388788 ATTATATCAATAACCATTTCATAC
1 ATTATATCAATAACCATTTCATAC
*
37388812 ATTATATCAATAATCATTTCATA
1 ATTATATCAATAACCATTTCATA
37388835 AAACCATGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.43, C:0.17, G:0.00, T:0.40
Consensus pattern (24 bp):
ATTATATCAATAACCATTTCATAC
Found at i:37389288 original size:29 final size:29
Alignment explanation
Indices: 37389249--37389328 Score: 115
Period size: 29 Copynumber: 2.8 Consensus size: 29
37389239 AATAATCATT
*
37389249 ATTCACAATTCACATTTCAATTTCAATTA
1 ATTCACTATTCACATTTCAATTTCAATTA
* *
37389278 ATTTACTATTCACATTTCAATTTCAATTT
1 ATTCACTATTCACATTTCAATTTCAATTA
* *
37389307 ATTCACTAATAACATTTCAATT
1 ATTCACTATTCACATTTCAATT
37389329 CAAATAAATA
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 45 1.00
ACGTcount: A:0.36, C:0.19, G:0.00, T:0.45
Consensus pattern (29 bp):
ATTCACTATTCACATTTCAATTTCAATTA
Found at i:37389348 original size:23 final size:21
Alignment explanation
Indices: 37389314--37389358 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 21
37389304 TTTATTCACT
37389314 AATAACATTTCAATTCAAATA
1 AATAACATTTCAATTCAAATA
*
37389335 AATAATCATATTCAATTCCAATA
1 AATAA-CAT-TTCAATTCAAATA
37389358 A
1 A
37389359 CCATATACAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 5 0.24
22 3 0.14
23 13 0.62
ACGTcount: A:0.51, C:0.16, G:0.00, T:0.33
Consensus pattern (21 bp):
AATAACATTTCAATTCAAATA
Found at i:37389427 original size:14 final size:16
Alignment explanation
Indices: 37389410--37389442 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
37389400 ATCATATCAA
37389410 TTACTTACC-T-CATT
1 TTACTTACCATGCATT
37389424 TTACTTACCATGCATT
1 TTACTTACCATGCATT
37389440 TTA
1 TTA
37389443 ATTAAAATAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 9 0.53
15 1 0.06
16 7 0.41
ACGTcount: A:0.24, C:0.24, G:0.03, T:0.48
Consensus pattern (16 bp):
TTACTTACCATGCATT
Found at i:37390137 original size:5 final size:5
Alignment explanation
Indices: 37390129--37390183 Score: 92
Period size: 5 Copynumber: 11.0 Consensus size: 5
37390119 GTTTATTAGT
* *
37390129 TAATA TAATA TAATA TAATC TAATA TAACA TAATA TAATA TAATA TAATA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
37390179 TAATA
1 TAATA
37390184 ATATACTTTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 46 1.00
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (5 bp):
TAATA
Found at i:37418927 original size:25 final size:25
Alignment explanation
Indices: 37418899--37418977 Score: 74
Period size: 25 Copynumber: 3.3 Consensus size: 25
37418889 GCTTTTGACA
37418899 CATACCAACCTTACCAATTTAGATT
1 CATACCAACCTTACCAATTTAGATT
* ** * **
37418924 CATA--AA-CATACCGCTTTTGACA
1 CATACCAACCTTACCAATTTAGATT
*
37418946 CATACCAACCTTAACAATTTAGATT
1 CATACCAACCTTACCAATTTAGATT
37418971 CATACCA
1 CATACCA
37418978 TAACAAAATA
Statistics
Matches: 38, Mismatches: 13, Indels: 6
0.67 0.23 0.11
Matches are distributed among these distances:
22 14 0.37
23 2 0.05
24 2 0.05
25 20 0.53
ACGTcount: A:0.38, C:0.28, G:0.05, T:0.29
Consensus pattern (25 bp):
CATACCAACCTTACCAATTTAGATT
Found at i:37418949 original size:47 final size:47
Alignment explanation
Indices: 37418880--37418974 Score: 181
Period size: 47 Copynumber: 2.0 Consensus size: 47
37418870 TTCCATACCA
*
37418880 AAACATACCGCTTTTGACACATACCAACCTTACCAATTTAGATTCAT
1 AAACATACCGCTTTTGACACATACCAACCTTAACAATTTAGATTCAT
37418927 AAACATACCGCTTTTGACACATACCAACCTTAACAATTTAGATTCAT
1 AAACATACCGCTTTTGACACATACCAACCTTAACAATTTAGATTCAT
37418974 A
1 A
37418975 CCATAACAAA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.38, C:0.26, G:0.06, T:0.29
Consensus pattern (47 bp):
AAACATACCGCTTTTGACACATACCAACCTTAACAATTTAGATTCAT
Found at i:37420601 original size:30 final size:30
Alignment explanation
Indices: 37420567--37420636 Score: 90
Period size: 29 Copynumber: 2.4 Consensus size: 30
37420557 GCCGAAACTT
*
37420567 TCCCTTTTCATTA-TTCGATTGTCGTCACCA
1 TCCCTTTTCATTAGTTCG-TGGTCGTCACCA
* *
37420597 TCCCTTGTCA-TAGTTTGTGGTCGTCACCA
1 TCCCTTTTCATTAGTTCGTGGTCGTCACCA
37420626 TCCCTTTTCAT
1 TCCCTTTTCAT
37420637 AATCAATAGC
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
29 22 0.65
30 12 0.35
ACGTcount: A:0.14, C:0.30, G:0.13, T:0.43
Consensus pattern (30 bp):
TCCCTTTTCATTAGTTCGTGGTCGTCACCA
Found at i:37422503 original size:48 final size:48
Alignment explanation
Indices: 37422414--37422524 Score: 125
Period size: 48 Copynumber: 2.3 Consensus size: 48
37422404 CCCAGTCATA
* * *
37422414 GTCTTATATGGGATCACATAATGATGCCAATGTCATGTCCCAAACATG
1 GTCTTATATGGGATCACATAATGATGACAATGCCATATCCCAAACATG
* * * * *
37422462 GTCTTACATGGGATCATAT-ATCGATGACGATGCCATATCCCAGATATG
1 GTCTTATATGGGATCACATAAT-GATGACAATGCCATATCCCAAACATG
*
37422510 GTCTTATAGGGGATC
1 GTCTTATATGGGATC
37422525 TCATTATCCC
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
47 2 0.04
48 50 0.96
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.30
Consensus pattern (48 bp):
GTCTTATATGGGATCACATAATGATGACAATGCCATATCCCAAACATG
Found at i:37428654 original size:31 final size:31
Alignment explanation
Indices: 37428617--37428686 Score: 131
Period size: 31 Copynumber: 2.3 Consensus size: 31
37428607 TTCAGAGAGT
*
37428617 CACACGCCCGCGTGGGTAGGTCGTGTGGTCA
1 CACACGCCCACGTGGGTAGGTCGTGTGGTCA
37428648 CACACGCCCACGTGGGTAGGTCGTGTGGTCA
1 CACACGCCCACGTGGGTAGGTCGTGTGGTCA
37428679 CACACGCC
1 CACACGCC
37428687 ACTGTGGCTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.16, C:0.33, G:0.34, T:0.17
Consensus pattern (31 bp):
CACACGCCCACGTGGGTAGGTCGTGTGGTCA
Found at i:37429886 original size:48 final size:48
Alignment explanation
Indices: 37429817--37430038 Score: 147
Period size: 48 Copynumber: 4.7 Consensus size: 48
37429807 GTAGGGTAGA
* * * * *
37429817 AATGCCATATCTCAGATATGGTCTTATATGGGGCCACATATCAATGCC
1 AATGCCATGTCCCAGACATGGTCTTACATGGGTCCACATATCAATGCC
37429865 AATGCCATGTCCCAGACATGGTCTTACATGGGATCACACATATCGAA-G-C
1 AATGCCATGTCCCAGACATGGTCTTACATGGG-TC-CACATATC-AATGCC
* * * **** *
37429914 --TG--ATAG-CCCAG-CAATGGTCTTGCACGATGTTTTTATATCGATGCC
1 AATGCCAT-GTCCCAGAC-ATGGTCTTACATG-GGTCCACATATCAATGCC
* * * *
37429959 AATACCATGTCCCAGACATGGTCTTATATGGGAT-CACATAACGATGCC
1 AATGCCATGTCCCAGACATGGTCTTACATGGG-TCCACATATCAATGCC
* *
37430007 AATGCCATGTCTCAGACATGATCTTACATGGG
1 AATGCCATGTCCCAGACATGGTCTTACATGGG
37430039 ATTAGATATC
Statistics
Matches: 133, Mismatches: 26, Indels: 30
0.70 0.14 0.16
Matches are distributed among these distances:
43 1 0.01
44 7 0.05
45 20 0.15
46 2 0.02
47 3 0.02
48 68 0.51
49 20 0.15
50 10 0.08
51 2 0.02
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.27
Consensus pattern (48 bp):
AATGCCATGTCCCAGACATGGTCTTACATGGGTCCACATATCAATGCC
Found at i:37430086 original size:48 final size:47
Alignment explanation
Indices: 37429948--37430089 Score: 142
Period size: 48 Copynumber: 3.0 Consensus size: 47
37429938 CGATGTTTTT
37429948 ATATCGATGCCAATACCATGTCCC-AGACATGGTCTTATATGGGATCAC
1 ATATCGATGCCAATACCA--TCCCTAGACATGGTCTTATATGGGATCAC
* * ** * * * *
37429996 ATAACGATGCCAATGCCATGTCTCAGACATGATCTTACATGGGATTAG
1 ATATCGATGCCAATACCATCCCT-AGACATGGTCTTATATGGGATCAC
** *
37430044 ATATCGATAACAATACCATACCCTAGATATGGTCTTATATGGGATC
1 ATATCGATGCCAATACCAT-CCCTAGACATGGTCTTATATGGGATC
37430090 TCGTCAACCC
Statistics
Matches: 73, Mismatches: 18, Indels: 6
0.75 0.19 0.06
Matches are distributed among these distances:
46 2 0.03
48 69 0.95
49 2 0.03
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (47 bp):
ATATCGATGCCAATACCATCCCTAGACATGGTCTTATATGGGATCAC
Found at i:37432296 original size:27 final size:27
Alignment explanation
Indices: 37432264--37432428 Score: 206
Period size: 27 Copynumber: 6.1 Consensus size: 27
37432254 CCCAGATTGA
37432264 TAAAATGATTGTTTTGCCCTTTTGAGG
1 TAAAATGATTGTTTTGCCCTTTTGAGG
* * *
37432291 TAAAATGATTATTTTCCCCTTTTGAGA
1 TAAAATGATTGTTTTGCCCTTTTGAGG
37432318 TAAAATGATTGTTTTGCCCTTTTGAGG
1 TAAAATGATTGTTTTGCCCTTTTGAGG
* * *
37432345 TAAAATAACTGTTTTTCCCTTTTGAGG
1 TAAAATGATTGTTTTGCCCTTTTGAGG
* *
37432372 TAAAATGAGTGTTTTGTCCTTTTGAGG
1 TAAAATGATTGTTTTGCCCTTTTGAGG
* * * * *
37432399 -GAAACGACTGTTTTGCCCTTATGTGG
1 TAAAATGATTGTTTTGCCCTTTTGAGG
37432425 TAAA
1 TAAA
37432429 TGGTTGAAAT
Statistics
Matches: 117, Mismatches: 20, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
26 20 0.17
27 97 0.83
ACGTcount: A:0.25, C:0.13, G:0.20, T:0.42
Consensus pattern (27 bp):
TAAAATGATTGTTTTGCCCTTTTGAGG
Found at i:37432798 original size:18 final size:18
Alignment explanation
Indices: 37432758--37432808 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
37432748 TTACATACTG
*
37432758 TTTACTGTTACTGCACTA
1 TTTACTATTACTGCACTA
* * *
37432776 ATTACTATTATTGCATTA
1 TTTACTATTACTGCACTA
*
37432794 TTTACTGTTACTGCA
1 TTTACTATTACTGCA
37432809 ATGGGCCGAT
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.25, C:0.18, G:0.10, T:0.47
Consensus pattern (18 bp):
TTTACTATTACTGCACTA
Found at i:37455129 original size:28 final size:28
Alignment explanation
Indices: 37455098--37455156 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
37455088 TGTGGTTTGA
37455098 ATGATAAATTTTGGTTGTGTATAAAGCC
1 ATGATAAATTTTGGTTGTGTATAAAGCC
37455126 ATGATAAATTTTGGTTGTGTATAAAGCC
1 ATGATAAATTTTGGTTGTGTATAAAGCC
37455154 ATG
1 ATG
37455157 CAAAAATGGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.32, C:0.07, G:0.22, T:0.39
Consensus pattern (28 bp):
ATGATAAATTTTGGTTGTGTATAAAGCC
Found at i:37457658 original size:34 final size:34
Alignment explanation
Indices: 37457620--37457694 Score: 109
Period size: 34 Copynumber: 2.2 Consensus size: 34
37457610 CTTTTTCAGA
37457620 AACAGTATTAGTCTGGGCCTGAGCCCATTTCAAT
1 AACAGTATTAGTCTGGGCCTGAGCCCATTTCAAT
* *
37457654 AACAG-AGGTAGTCTGGGCCTTAGCCCATTTCAAT
1 AACAGTA-TTAGTCTGGGCCTGAGCCCATTTCAAT
37457688 -ACAGTAT
1 AACAGTAT
37457695 GCAAACAAAG
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
33 5 0.14
34 31 0.86
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (34 bp):
AACAGTATTAGTCTGGGCCTGAGCCCATTTCAAT
Found at i:37461253 original size:12 final size:12
Alignment explanation
Indices: 37461236--37461260 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
37461226 CTAGTGTGCA
37461236 GAGAAGAATGCT
1 GAGAAGAATGCT
37461248 GAGAAGAATGCT
1 GAGAAGAATGCT
37461260 G
1 G
37461261 GTAGCTTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.08, G:0.36, T:0.16
Consensus pattern (12 bp):
GAGAAGAATGCT
Found at i:37463154 original size:25 final size:25
Alignment explanation
Indices: 37463097--37463183 Score: 70
Period size: 25 Copynumber: 3.5 Consensus size: 25
37463087 TAGCTCTTAT
* *
37463097 GAGCTTATCGTTACTCAACTC-GTATA
1 GAGCTTACCGTTATTCAACTCAG-A-A
* *
37463123 -AGCTTACCGTTATTCAACTCGGAG
1 GAGCTTACCGTTATTCAACTCAGAA
* ** *
37463147 GAGTTTACTATTATTCAGCTCAGAA
1 GAGCTTACCGTTATTCAACTCAGAA
37463172 GAGCTTACCGTT
1 GAGCTTACCGTT
37463184 TACAGCTCAT
Statistics
Matches: 47, Mismatches: 12, Indels: 5
0.73 0.19 0.08
Matches are distributed among these distances:
25 46 0.98
26 1 0.02
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.33
Consensus pattern (25 bp):
GAGCTTACCGTTATTCAACTCAGAA
Found at i:37465883 original size:27 final size:26
Alignment explanation
Indices: 37465830--37465885 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 26
37465820 GGTCGTTAAG
*
37465830 ACCCTGGTTTGTAAAATCTCTGAAAT
1 ACCCTGGTTTGTAAAATCACTGAAAT
* * *
37465856 ACCCTTGTTGTGTAAAATGACTGTAAT
1 ACCCTGGTT-TGTAAAATCACTGAAAT
37465883 ACC
1 ACC
37465886 TCTGTATGGT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
26 8 0.32
27 17 0.68
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (26 bp):
ACCCTGGTTTGTAAAATCACTGAAAT
Found at i:37466356 original size:27 final size:27
Alignment explanation
Indices: 37466318--37466370 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
37466308 CTACATTTGA
*
37466318 TACTGGGCTTAGGCCCACCTGATTCTG
1 TACTAGGCTTAGGCCCACCTGATTCTG
37466345 TACTAGGCTTAGGCCCACCTGATTCT
1 TACTAGGCTTAGGCCCACCTGATTCT
37466371 ATTAATGGGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.17, C:0.30, G:0.23, T:0.30
Consensus pattern (27 bp):
TACTAGGCTTAGGCCCACCTGATTCTG
Found at i:37466384 original size:27 final size:27
Alignment explanation
Indices: 37466327--37466388 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
37466317 ATACTGGGCT
* *
37466327 TAGGCCCACCTGATTCTGTACTAGGCT
1 TAGGCCCACCTGATTCTGTAATAGGCG
* *
37466354 TAGGCCCACCTGATTCTATTAAT-GGGG
1 TAGGCCCACCTGATTCT-GTAATAGGCG
37466381 TAGGCCCA
1 TAGGCCCA
37466389 ATTGTTACCG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 27 0.90
28 3 0.10
ACGTcount: A:0.21, C:0.27, G:0.24, T:0.27
Consensus pattern (27 bp):
TAGGCCCACCTGATTCTGTAATAGGCG
Found at i:37468926 original size:28 final size:27
Alignment explanation
Indices: 37468869--37469020 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
37468859 TAAATTGTGC
* *
37468869 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
37468896 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
37468924 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
37468951 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGT-TGACTATGT
* *
37468979 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
37469006 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37469021 GACTTAATAT
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:37468934 original size:55 final size:55
Alignment explanation
Indices: 37468869--37469020 Score: 241
Period size: 55 Copynumber: 2.8 Consensus size: 55
37468859 TAAATTGTGC
* *
37468869 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* *
37468924 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* * *
37468979 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCG
37469021 GACTTAATAT
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 90 1.00
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
Found at i:37473571 original size:201 final size:201
Alignment explanation
Indices: 37473222--37473597 Score: 644
Period size: 201 Copynumber: 1.9 Consensus size: 201
37473212 GTTATTTGTT
*
37473222 TGCATATCTGCATCTGATACTGATTCTGTATTGGGCTTAGGCCCACCTGATTCTGTTAATGGACT
1 TGCATATCTACATCTGATACTGATTCTGTATTGGGCTTAGGCCCACCTGATTCTGTTAATGGACT
* *
37473287 AGGACCAACTGTTACCGATTTAGAGAATGGCCTAGGCCCAATTGATTTTGATGAGGGCTGATACC
66 AGGACCAACTGTTACCGATTTAGAGAATGGCCTAGGCCCAATTGATTCTGATGAGGGCTGAGACC
* *
37473352 CAAATGAAATTTTACTGGGCTTTGCCCCAAACACATTGTTTTGTTATTGTAATGGGCTCCAACTA
131 CAAATGAAATTGTACTGGGCTTTGCCCCAAACACATTGTTCTGTTATTGTAATGGGCTCCAACTA
37473417 TCTGTC
196 TCTGTC
* *
37473423 TGCATATCTACATCTGATACTGATTTTGTATTGGGCTTAGGCCTACCTGATTCTGTTAATGGACT
1 TGCATATCTACATCTGATACTGATTCTGTATTGGGCTTAGGCCCACCTGATTCTGTTAATGGACT
* * * *
37473488 AGGCCCAACTGTTACCGATTTTGAGAATGGGCTAGGCCCGATTGATTCTGATGAGGGCTGAGACC
66 AGGACCAACTGTTACCGATTTAGAGAATGGCCTAGGCCCAATTGATTCTGATGAGGGCTGAGACC
*
37473553 CAAGTGAAATTGTACTGGGCTTTGCCCCAAACACATTGTTCTGTT
131 CAAATGAAATTGTACTGGGCTTTGCCCCAAACACATTGTTCTGTT
37473598 TTATTTTAGG
Statistics
Matches: 163, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
201 163 1.00
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.33
Consensus pattern (201 bp):
TGCATATCTACATCTGATACTGATTCTGTATTGGGCTTAGGCCCACCTGATTCTGTTAATGGACT
AGGACCAACTGTTACCGATTTAGAGAATGGCCTAGGCCCAATTGATTCTGATGAGGGCTGAGACC
CAAATGAAATTGTACTGGGCTTTGCCCCAAACACATTGTTCTGTTATTGTAATGGGCTCCAACTA
TCTGTC
Found at i:37483872 original size:46 final size:47
Alignment explanation
Indices: 37483690--37483911 Score: 156
Period size: 46 Copynumber: 4.8 Consensus size: 47
37483680 TCACTTGCGT
* * * ***
37483690 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-A-TTTTGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGACAT-A
* *
37483736 GAGCCAGTGTAAGACTATGTCTAGGACATGGCATCGG-TATTGAGACA-A
1 GAGCCAGTGTAAGAC-ATGTCTGGGACAT-GCATCGGCTA-CGAGACATA
* ** * * *
37483784 GTGTTAATGTAAGACATGTCTAGGACATGCATCAGCCT-CGAGACATA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATC-GGCTACGAGACATA
37483831 -AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAG--AT-
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGACATA
* * * *
37483874 GTGTCTGTGTAAGACCATTTCTGGGACATGGCATCGGC
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
37483912 GCAGATATGC
Statistics
Matches: 140, Mismatches: 24, Indels: 24
0.74 0.13 0.13
Matches are distributed among these distances:
44 12 0.09
45 16 0.11
46 64 0.46
47 28 0.20
48 19 0.14
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (47 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGACATA
Found at i:37485055 original size:20 final size:20
Alignment explanation
Indices: 37485016--37485055 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
37485006 GAATTAATGG
37485016 CTACACGGGCGTATTGCCCTT
1 CTACACGGGCG-ATTGCCCTT
37485037 CTACACGGGC-ATGTGCCCT
1 CTACACGGGCGAT-TGCCCT
37485056 GCTCCAAAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 2 0.11
20 6 0.33
21 10 0.56
ACGTcount: A:0.15, C:0.35, G:0.25, T:0.25
Consensus pattern (20 bp):
CTACACGGGCGATTGCCCTT
Found at i:37489193 original size:40 final size:40
Alignment explanation
Indices: 37489114--37489290 Score: 225
Period size: 40 Copynumber: 4.5 Consensus size: 40
37489104 CGGATGATAA
* *
37489114 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * * * *
37489154 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATAT
*
37489194 CCGGGCTAAGACCTGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* *
37489234 CCGGGCTAAGACCCGAGGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
37489274 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
37489291 ATACTTGGGT
Statistics
Matches: 117, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
38 1 0.01
39 14 0.12
40 100 0.85
41 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:37495829 original size:17 final size:14
Alignment explanation
Indices: 37495806--37495844 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 14
37495796 TATTTTATGC
37495806 AAAAGAAAGGAAATAA
1 AAAAGAAA-G-AATAA
37495822 ATAAAGAAAGAATAA
1 A-AAAGAAAGAATAA
37495837 AAAAGAAA
1 AAAAGAAA
37495845 AGTAATGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 7 0.32
15 6 0.27
16 2 0.09
17 7 0.32
ACGTcount: A:0.77, C:0.00, G:0.15, T:0.08
Consensus pattern (14 bp):
AAAAGAAAGAATAA
Found at i:37497610 original size:40 final size:40
Alignment explanation
Indices: 37497564--37497694 Score: 187
Period size: 40 Copynumber: 3.3 Consensus size: 40
37497554 GTGCGAGTGC
37497564 TATATCCGGGCTATGTCCCGAAGGCATTTATGCTAGTGAT
1 TATATCCGGGCTATGTCCCGAAGGCATTTATGCTAGTGAT
* * * * *
37497604 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-C
1 TATATCCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGAT
37497644 TATATCCGGGCTATGT-CCGAAGGCA-TTATGCTAGTGAT
1 TATATCCGGGCTATGTCCCGAAGGCATTTATGCTAGTGAT
37497682 TATATCCGGGCTA
1 TATATCCGGGCTA
37497695 AGAACCCGAA
Statistics
Matches: 79, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
37 2 0.03
38 20 0.25
39 9 0.11
40 46 0.58
41 2 0.03
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.30
Consensus pattern (40 bp):
TATATCCGGGCTATGTCCCGAAGGCATTTATGCTAGTGAT
Found at i:37497676 original size:78 final size:80
Alignment explanation
Indices: 37497531--37497727 Score: 305
Period size: 78 Copynumber: 2.5 Consensus size: 80
37497521 CGGATGATAA
* * *
37497531 CCGGACTAAGATCCGAAGG-AATTGTGCGAG-TGCTATATCCGGGCTATGTCCCGAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTA
37497594 TGCTAGTGATTATAT
66 TGCTAGTGATTATAT
37497609 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGT-CCGAAGGCA-TTA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTA
37497672 TGCTAGTGATTATAT
66 TGCTAGTGATTATAT
* *
37497687 CCGGGCTAAGAACCCGAAGACATTTGTGTGA-TTGCTATATC
1 CCGGGCTAAG-ACCCGAAGGCATTTGTGCGAGTTGCTATATC
37497728 GGGTAAGACC
Statistics
Matches: 111, Mismatches: 5, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
78 55 0.50
79 37 0.33
80 19 0.17
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTA
TGCTAGTGATTATAT
Found at i:37497726 original size:40 final size:39
Alignment explanation
Indices: 37497531--37497745 Score: 178
Period size: 40 Copynumber: 5.6 Consensus size: 39
37497521 CGGATGATAA
* * * *
37497531 CCGGACTAAGATCCGAAGG-AATTGTGCGAGTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGTGAGTGCTATAT
* * * *
37497569 CCGGGCTATGTCCCGAAGGCATTTATGCT-AGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTG-TGAGTG-CTATAT
*
37497609 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGTGAG-TGCTATAT
* *
37497649 CCGGGCTATG-TCCGAAGGCATTATGCTAGTGA-T--TATAT
1 CCGGGCTAAGACCCGAAGGCATT-TG-T-GTGAGTGCTATAT
* *
37497687 CCGGGCTAAGAACCCGAAGACATTTGTGTGATTGCTATAT
1 CCGGGCTAAG-ACCCGAAGGCATTTGTGTGAGTGCTATAT
*
37497727 -CGGG-TAAGA-CCGAGGGCAT
1 CCGGGCTAAGACCCGAAGGCAT
37497746 GGGAGTTGTA
Statistics
Matches: 143, Mismatches: 21, Indels: 28
0.74 0.11 0.15
Matches are distributed among these distances:
36 8 0.06
37 5 0.03
38 35 0.24
39 26 0.18
40 63 0.44
41 3 0.02
42 3 0.02
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGTGAGTGCTATAT
Found at i:37508011 original size:21 final size:21
Alignment explanation
Indices: 37507987--37508057 Score: 72
Period size: 21 Copynumber: 3.2 Consensus size: 21
37507977 TATCACGAAC
37507987 TCAGACCACAACTCAATGAGT
1 TCAGACCACAACTCAATGAGT
* **
37508008 TCAGACGTCACATATATC-ATGAAC
1 TCAGAC--CACA-A-CTCAATGAGT
37508032 TCAGACCACAACTCAATGAGT
1 TCAGACCACAACTCAATGAGT
37508053 TCAGA
1 TCAGA
37508058 TTTCATAATT
Statistics
Matches: 39, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
20 2 0.05
21 16 0.41
22 4 0.10
23 4 0.10
24 11 0.28
25 2 0.05
ACGTcount: A:0.38, C:0.27, G:0.14, T:0.21
Consensus pattern (21 bp):
TCAGACCACAACTCAATGAGT
Found at i:37508019 original size:45 final size:45
Alignment explanation
Indices: 37507969--37508057 Score: 169
Period size: 45 Copynumber: 2.0 Consensus size: 45
37507959 CAAAACATGT
37507969 GTCACATATATCACGAACTCAGACCACAACTCAATGAGTTCAGAC
1 GTCACATATATCACGAACTCAGACCACAACTCAATGAGTTCAGAC
*
37508014 GTCACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGA
1 GTCACATATATCACGAACTCAGACCACAACTCAATGAGTTCAGA
37508058 TTTCATAATT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.38, C:0.27, G:0.13, T:0.21
Consensus pattern (45 bp):
GTCACATATATCACGAACTCAGACCACAACTCAATGAGTTCAGAC
Found at i:37508035 original size:24 final size:24
Alignment explanation
Indices: 37507969--37508037 Score: 65
Period size: 24 Copynumber: 3.0 Consensus size: 24
37507959 CAAAACATGT
*
37507969 GTCACATATATCACGAACTCAGAC
1 GTCACATATATCATGAACTCAGAC
* **
37507993 --CACA-A-CTCAATGAGTTCAGAC
1 GTCACATATATC-ATGAACTCAGAC
37508014 GTCACATATATCATGAACTCAGAC
1 GTCACATATATCATGAACTCAGAC
37508038 CACAACTCAA
Statistics
Matches: 33, Mismatches: 7, Indels: 10
0.66 0.14 0.20
Matches are distributed among these distances:
20 2 0.06
21 10 0.30
22 4 0.12
23 4 0.12
24 11 0.33
25 2 0.06
ACGTcount: A:0.38, C:0.28, G:0.13, T:0.22
Consensus pattern (24 bp):
GTCACATATATCATGAACTCAGAC
Found at i:37521141 original size:93 final size:93
Alignment explanation
Indices: 37520977--37521148 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
37520967 GCCCATAAGT
* * *
37520977 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
37521042 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CAAGTTCGGATGCCTAGTTACATCTCAC
* *
37521070 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37521135 CAAGTTCGGATGCC
66 CAAGTTCGGATGCC
37521149 CAAATATCCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CAAGTTCGGATGCCTAGTTACATCTCAC
Found at i:37521144 original size:46 final size:46
Alignment explanation
Indices: 37520969--37521144 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
37520959 TGTAACCCGC
* * * *
37520969 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * *
37521015 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* *
37521065 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
*
37521108 CCATAAGTGAACTCGGACTCAACTCAACAAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
37521145 TGCCCAAATA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 62 0.57
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:37521163 original size:46 final size:46
Alignment explanation
Indices: 37521020--37521163 Score: 127
Period size: 46 Copynumber: 3.1 Consensus size: 46
37521010 CGCATCCATG
* * *
37521020 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TATATCCC
* * *
37521068 A-CGAACTCGGACTCAACTCAACGAGTTCGGA----CATTTGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATAT--ATCC--C
* *
37521113 AGTGAACTCGGACTCAACTCAACAAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATATCCC
37521159 AGTGA
1 AGTGA
37521164 CATGTCACTC
Statistics
Matches: 76, Mismatches: 11, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
41 1 0.01
43 4 0.05
45 1 0.01
46 33 0.43
47 29 0.38
48 5 0.07
50 3 0.04
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATATCCC
Found at i:37527863 original size:25 final size:25
Alignment explanation
Indices: 37527829--37527879 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
37527819 AAGAAACTAA
37527829 ACATAAAGTAAGAGTAATTCGAGAT
1 ACATAAAGTAAGAGTAATTCGAGAT
37527854 ACATAAAGTAAGAGTAATTCGAGAT
1 ACATAAAGTAAGAGTAATTCGAGAT
37527879 A
1 A
37527880 GTTTAAAAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.49, C:0.08, G:0.20, T:0.24
Consensus pattern (25 bp):
ACATAAAGTAAGAGTAATTCGAGAT
Found at i:37534824 original size:33 final size:33
Alignment explanation
Indices: 37534782--37534849 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
37534772 CCAAATTGAG
*
37534782 TAAGTTTTCTTGTCTCGTTTTTAGTAATTTTAA
1 TAAGTTTTCTTGTCTCATTTTTAGTAATTTTAA
37534815 TAAGTTTTCTTGTCTCATTTTTAGTAATTTTAA
1 TAAGTTTTCTTGTCTCATTTTTAGTAATTTTAA
37534848 TA
1 TA
37534850 TTTTTAAAAC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.24, C:0.09, G:0.10, T:0.57
Consensus pattern (33 bp):
TAAGTTTTCTTGTCTCATTTTTAGTAATTTTAA
Found at i:37540557 original size:11 final size:11
Alignment explanation
Indices: 37540541--37540566 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
37540531 GACTACACCT
37540541 TTAATATAAAA
1 TTAATATAAAA
37540552 TTAATATAAAA
1 TTAATATAAAA
37540563 TTAA
1 TTAA
37540567 ACATTTACAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
TTAATATAAAA
Found at i:37543532 original size:21 final size:21
Alignment explanation
Indices: 37543508--37543578 Score: 124
Period size: 21 Copynumber: 3.4 Consensus size: 21
37543498 TCCAGCACAA
37543508 GCGTGTCCTAGGGTCACACGG
1 GCGTGTCCTAGGGTCACACGG
* *
37543529 GCGTGTCCTAAGGTCACATGG
1 GCGTGTCCTAGGGTCACACGG
37543550 GCGTGTCCTAGGGTCACACGG
1 GCGTGTCCTAGGGTCACACGG
37543571 GCGTGTCC
1 GCGTGTCC
37543579 CTTGGACCAC
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 46 1.00
ACGTcount: A:0.14, C:0.28, G:0.37, T:0.21
Consensus pattern (21 bp):
GCGTGTCCTAGGGTCACACGG
Found at i:37544144 original size:21 final size:21
Alignment explanation
Indices: 37544118--37544158 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
37544108 TTCATGAATC
37544118 ATTAATGAGTTCTCTAACTCT
1 ATTAATGAGTTCTCTAACTCT
37544139 ATTAATGAGTTCTCTAACTC
1 ATTAATGAGTTCTCTAACTC
37544159 ATCAATGGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.29, C:0.20, G:0.10, T:0.41
Consensus pattern (21 bp):
ATTAATGAGTTCTCTAACTCT
Found at i:37546100 original size:47 final size:46
Alignment explanation
Indices: 37546031--37546338 Score: 201
Period size: 46 Copynumber: 6.6 Consensus size: 46
37546021 TAATGCCGAA
* *
37546031 GCCATGTCCCAAACATGGTCTTACACTGGCTCATCCATCAAGTCGAT
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCAT-CATCAAGTCGAT
* * *
37546078 GCCATGTCCCAAACATGGTCTTACACTAGTTTTCA-CAT-ATCTGTACTGAT
1 GCCATGTCCCAGACATGGTCTTACACTAG--CTCATCATCA--AGT-C-GAT
* * * * *
37546128 GCCAAGTCCCAGACATGGTCTTACACT-GTCACATC-TCGTAGCCGCT
1 GCCATGTCCCAGACATGGTCTTACACTAG-CTCATCATC-AAGTCGAT
* * *
37546174 G-CATGTCCCAGACAT-GTCTTACACTGGCTTACATC-TCGAGGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTAGC-T-CATCATC-AAGTCGAT
* *
37546220 G-CATGTCCCAGACAT-TTCTTACATTAGCTC-TCATCTCAATGTCGAT
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCATCA--TCAA-GTCGAT
* *
37546266 GCCATGTCCCAGACATGGTCTTACACTAGCTC-TTAT-AATGTGGAT
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCATCATCAA-GTCGAT
*
37546311 GTTGCATGTCCCAGACAT-GTCTTACACT
1 G--CCATGTCCCAGACATGGTCTTACACT
37546339 GGCACACAAA
Statistics
Matches: 215, Mismatches: 26, Indels: 41
0.76 0.09 0.15
Matches are distributed among these distances:
43 2 0.01
44 12 0.06
45 25 0.12
46 60 0.28
47 60 0.28
48 22 0.10
49 6 0.03
50 28 0.13
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.30
Consensus pattern (46 bp):
GCCATGTCCCAGACATGGTCTTACACTAGCTCATCATCAAGTCGAT
Found at i:37546714 original size:30 final size:30
Alignment explanation
Indices: 37546678--37546757 Score: 142
Period size: 30 Copynumber: 2.6 Consensus size: 30
37546668 ATAATTGGGA
37546678 AAAATGACCATTTTCCCCTTAGGCTTTCAC
1 AAAATGACCATTTTCCCCTTAGGCTTTCAC
*
37546708 AAAATGACCATTTTACCCTTAGGCTTTCAC
1 AAAATGACCATTTTCCCCTTAGGCTTTCAC
37546738 AAAATGACCATTTTACCCCT
1 AAAATGACCATTTT-CCCCT
37546758 AGACCCGAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
30 43 0.91
31 4 0.09
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (30 bp):
AAAATGACCATTTTCCCCTTAGGCTTTCAC
Found at i:37548636 original size:36 final size:36
Alignment explanation
Indices: 37548584--37548656 Score: 101
Period size: 36 Copynumber: 2.0 Consensus size: 36
37548574 TAAAAATGGT
* * * *
37548584 TAAACTGACTGTTTTGTCAACTACCCTAAAGTTGAA
1 TAAACTGACTATTTTGTCAACCACCCCAAAATTGAA
*
37548620 TAAATTGACTATTTTGTCAACCACCCCAAAATTGAA
1 TAAACTGACTATTTTGTCAACCACCCCAAAATTGAA
37548656 T
1 T
37548657 GACTATTGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.36, C:0.21, G:0.11, T:0.33
Consensus pattern (36 bp):
TAAACTGACTATTTTGTCAACCACCCCAAAATTGAA
Found at i:37565402 original size:40 final size:40
Alignment explanation
Indices: 37565358--37565590 Score: 236
Period size: 40 Copynumber: 5.8 Consensus size: 40
37565348 TAGAGGTACC
* *
37565358 GAAGTACAAATAGGGGCACATATGTGCATTTAGGGGTATT
1 GAAGTACAAACAGGGGCACATATGTGCATTCAGGGGTATT
** * * * *
37565398 GAAGTACAAACAAAGGCACGTATGTACATTCAGGGGCACT
1 GAAGTACAAACAGGGGCACATATGTGCATTCAGGGGTATT
* ** *
37565438 GAAGTACAAATAGGGGCATGCATA--TGCATTCAGGGACATC
1 GAAGTACAAACAGGGGCA--CATATGTGCATTCAGGGGTATT
** *
37565478 GAAGTACAAACAGGTTCACATATGTGCATTCAGGGGTATC
1 GAAGTACAAACAGGGGCACATATGTGCATTCAGGGGTATT
* ** *
37565518 GAAGTACAAACAAGGGCATGTATGTGCATTCAAGGGGTAAT
1 GAAGTACAAACAGGGGCACATATGTGCATTC-AGGGGTATT
* *
37565559 GAAGTACAAATAGGGGCACGTATGTGCATTCA
1 GAAGTACAAACAGGGGCACATATGTGCATTCA
37565591 AAGTACCGAA
Statistics
Matches: 157, Mismatches: 31, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
38 4 0.03
40 115 0.73
41 35 0.22
42 3 0.02
ACGTcount: A:0.35, C:0.15, G:0.27, T:0.22
Consensus pattern (40 bp):
GAAGTACAAACAGGGGCACATATGTGCATTCAGGGGTATT
Found at i:37565601 original size:80 final size:80
Alignment explanation
Indices: 37565352--37565603 Score: 276
Period size: 80 Copynumber: 3.1 Consensus size: 80
37565342 CGTTTTTAGA
** * * **
37565352 GGTACCGAAGTACAAATAGGGGCACATATGTGCATTTAGGGGTATTGAAGTACAAACAAAGGCAC
1 GGTACCGAAGTACAAATAGGGGCATGTATGTGCATTCAGGGGTAATGAAGTACAAACAGGGGCAC
*
37565417 GTATGTACATTCAGG
66 GTATGTGCATTCAGG
* * * * **
37565432 GGCACTGAAGTACAAATAGGGGCATGCATATGCATTCA-GGG-ACATCGAAGTACAAACAGGTTC
1 GGTACCGAAGTACAAATAGGGGCATGTATGTGCATTCAGGGGTA-AT-GAAGTACAAACAGGGGC
*
37565495 ACATATGTGCATTCAGG
64 ACGTATGTGCATTCAGG
* * * *
37565512 GGTATCGAAGTACAAACAAGGGCATGTATGTGCATTCAAGGGGTAATGAAGTACAAATAGGGGCA
1 GGTACCGAAGTACAAATAGGGGCATGTATGTGCATTC-AGGGGTAATGAAGTACAAACAGGGGCA
*
37565577 CGTATGTGCATTCA-A
65 CGTATGTGCATTCAGG
*
37565592 AGTACCGAAGTA
1 GGTACCGAAGTA
37565604 AATTCACATA
Statistics
Matches: 139, Mismatches: 28, Indels: 10
0.79 0.16 0.06
Matches are distributed among these distances:
78 1 0.01
79 4 0.03
80 99 0.71
81 29 0.21
82 5 0.04
83 1 0.01
ACGTcount: A:0.35, C:0.16, G:0.27, T:0.22
Consensus pattern (80 bp):
GGTACCGAAGTACAAATAGGGGCATGTATGTGCATTCAGGGGTAATGAAGTACAAACAGGGGCAC
GTATGTGCATTCAGG
Found at i:37565601 original size:120 final size:118
Alignment explanation
Indices: 37565353--37565603 Score: 331
Period size: 120 Copynumber: 2.1 Consensus size: 118
37565343 GTTTTTAGAG
* * *
37565353 GTACCGAAGTACAAATAGGGGCACATATGTGCATTTAGGGGTATTGAAGTACAAACAAAGGCACG
1 GTACCGAAGTACAAACAGGGGCACATATGTGCATTCAGGGGTATCGAAGTACAAACAAAGGCACG
* * *
37565418 TATGTACATTCAGGGGCACTGAAGTACAAATAGGGGCATGCATATGCATTCAG
66 TATGTACATTCAGGGGCAATGAAGTACAAATAGGGGCACGCATATGCATTCAA
* ** *
37565471 GGACATCGAAGTACAAACAGGTTCACATATGTGCATTCAGGGGTATCGAAGTACAAACAAGGGCA
1 GTAC--CGAAGTACAAACAGGGGCACATATGTGCATTCAGGGGTATCGAAGTACAAACAAAGGCA
* * * * *
37565536 TGTATGTGCATTCAAGGGGTAATGAAGTACAAATAGGGGCACGTATGTGCATTCAAA
64 CGTATGTACATTC-AGGGGCAATGAAGTACAAATAGGGGCACGCATATGCATTC-AA
37565593 GTACCGAAGTA
1 GTACCGAAGTA
37565604 AATTCACATA
Statistics
Matches: 113, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
118 3 0.03
120 71 0.63
121 35 0.31
122 4 0.04
ACGTcount: A:0.35, C:0.16, G:0.27, T:0.22
Consensus pattern (118 bp):
GTACCGAAGTACAAACAGGGGCACATATGTGCATTCAGGGGTATCGAAGTACAAACAAAGGCACG
TATGTACATTCAGGGGCAATGAAGTACAAATAGGGGCACGCATATGCATTCAA
Found at i:37568191 original size:43 final size:44
Alignment explanation
Indices: 37568142--37568314 Score: 158
Period size: 43 Copynumber: 4.0 Consensus size: 44
37568132 GATTACCGAG
* * *
37568142 ATGTGATTACATGTAAGACCATGTCTGGAACATTGGCATTGTAT
1 ATGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGTAT
** * *
37568186 -TGTGATTACGCGTAAGACCATGTTTGGGACATTGGCATCGT-T
1 ATGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGTAT
* * * * * *
37568228 ATATGATTTCGTGCAAGACTC-TATCTAGGACAGTGGCATCG-AT
1 ATGTGATTACATGTAAGAC-CATATCTGGGACATTGGCATCGTAT
* * *
37568271 ATGTGATAACATGTAAGACCATATCTGGGATA-TGGCATTGTAT
1 ATGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGTAT
37568314 A
1 A
37568315 AGCTTTATGT
Statistics
Matches: 103, Mismatches: 21, Indels: 11
0.76 0.16 0.08
Matches are distributed among these distances:
42 9 0.09
43 93 0.90
44 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.32
Consensus pattern (44 bp):
ATGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGTAT
Found at i:37573214 original size:24 final size:24
Alignment explanation
Indices: 37573162--37573322 Score: 96
Period size: 24 Copynumber: 6.6 Consensus size: 24
37573152 AATGACATTG
*
37573162 GCACTA-AGTGTGCGGATTTTGAATG
1 GCACTATA-TGTGCGGA-TTTGAATA
*
37573187 GCACTATATGTGCGGAATTGAATA
1 GCACTATATGTGCGGATTTGAATA
* * *
37573211 GCACCATGTGTGCTGATTTGAAT-
1 GCACTATATGTGCGGATTTGAATA
* * * *
37573234 GTCAATATGAGTGTGTGGATTTCTAA-G
1 G-CACTAT-A-TGTGCGGATTT-GAATA
* * * *
37573261 GCACTATGTGTGCGGGTTAGAATG
1 GCACTATATGTGCGGATTTGAATA
*
37573285 GTACTA-AGTGTGCGGATTTGAATA
1 GCACTATA-TGTGCGGATTTGAATA
*
37573309 GCACTATGTGTGCG
1 GCACTATATGTGCG
37573323 AAATCGATTG
Statistics
Matches: 102, Mismatches: 25, Indels: 19
0.70 0.17 0.13
Matches are distributed among these distances:
23 3 0.03
24 67 0.66
25 14 0.14
26 15 0.15
27 3 0.03
ACGTcount: A:0.25, C:0.12, G:0.30, T:0.32
Consensus pattern (24 bp):
GCACTATATGTGCGGATTTGAATA
Found at i:37573313 original size:48 final size:49
Alignment explanation
Indices: 37573162--37573322 Score: 159
Period size: 48 Copynumber: 3.3 Consensus size: 49
37573152 AATGACATTG
* * *
37573162 GCACTAAGTGTGCGGATTTTGAATGGCACTATA-TGTGCGGAATTGAATA
1 GCACTATGTGTGCGGA-TTTGAATGGTACTATAGTGTGCGGATTTGAATA
* * * * * *
37573211 GCACCATGTGTGCTGATTTGAAT-GTCAATATGAGTGTGTGGATTTCTAA-G
1 GCACTATGTGTGCGGATTTGAATGGT-ACTAT-AGTGTGCGGATTT-GAATA
* *
37573261 GCACTATGTGTGCGGGTTAGAATGGTACTA-AGTGTGCGGATTTGAATA
1 GCACTATGTGTGCGGATTTGAATGGTACTATAGTGTGCGGATTTGAATA
37573309 GCACTATGTGTGCG
1 GCACTATGTGTGCG
37573323 AAATCGATTG
Statistics
Matches: 89, Mismatches: 17, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
47 3 0.03
48 37 0.42
49 14 0.16
50 31 0.35
51 4 0.04
ACGTcount: A:0.25, C:0.12, G:0.30, T:0.32
Consensus pattern (49 bp):
GCACTATGTGTGCGGATTTGAATGGTACTATAGTGTGCGGATTTGAATA
Found at i:37579838 original size:24 final size:24
Alignment explanation
Indices: 37579710--37579840 Score: 120
Period size: 24 Copynumber: 5.3 Consensus size: 24
37579700 GGAATGACAT
37579710 TGGCACTAAGTGTGCGGATTTTGAA
1 TGGCACTAAGTGTGCGGA-TTTGAA
* *
37579735 TGGCACTATGTGTGCTGATTTGAA
1 TGGCACTAAGTGTGCGGATTTGAA
* * * *
37579759 TGTCAATACGAGTGTGTGGATTTCTAA
1 TGGCACTA--AGTGTGCGGATTT-GAA
* * * *
37579786 -GGCACTATGTGTGCGGGTTAGCA
1 TGGCACTAAGTGTGCGGATTTGAA
37579809 TGGCACTAAGTGTGCGGATTTGAA
1 TGGCACTAAGTGTGCGGATTTGAA
*
37579833 TAGCACTA
1 TGGCACTA
37579841 TGAGTGCAAA
Statistics
Matches: 81, Mismatches: 21, Indels: 9
0.73 0.19 0.08
Matches are distributed among these distances:
23 1 0.01
24 47 0.58
25 16 0.20
26 15 0.19
27 2 0.02
ACGTcount: A:0.24, C:0.14, G:0.31, T:0.32
Consensus pattern (24 bp):
TGGCACTAAGTGTGCGGATTTGAA
Found at i:37588600 original size:21 final size:21
Alignment explanation
Indices: 37588574--37588614 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
37588564 CCAAATTAAG
*
37588574 TTCCACTACTTTTACCTAAAT
1 TTCCACTAATTTTACCTAAAT
37588595 TTCCACTAATTTTACCTAAA
1 TTCCACTAATTTTACCTAAA
37588615 AATAGACTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.32, C:0.27, G:0.00, T:0.41
Consensus pattern (21 bp):
TTCCACTAATTTTACCTAAAT
Found at i:37593282 original size:50 final size:50
Alignment explanation
Indices: 37593159--37593380 Score: 212
Period size: 50 Copynumber: 4.6 Consensus size: 50
37593149 CATCAAGTTT
* * * * *
37593159 ATGCCATGTCCCAAACATGGTCTTACACT-GACTATCA-AAATCAAG-GTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTCACACAT-ATGTGCCG
* *
37593208 ATGCCATGTCCCAGACATGCTCTTACACTAGCTCTCACACATCTGTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACACATATGTGCCG
* * * *
37593258 ATACCATGTCCCAGAAATGGTCTTACACTAGCTCTCGTCTCA-ATGT--CG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC-ACACATATGTGCCG
* * *
37593306 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-ATGTG-GCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACACATATGTGCCG
*
37593354 ATG-CATGTCCCAGTCAT-GTCTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
37593381 GGAACACAAA
Statistics
Matches: 145, Mismatches: 21, Indels: 17
0.79 0.11 0.09
Matches are distributed among these distances:
46 11 0.08
47 15 0.10
48 40 0.28
49 33 0.23
50 43 0.30
51 3 0.02
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (50 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACACATATGTGCCG
Found at i:37593324 original size:98 final size:94
Alignment explanation
Indices: 37593199--37593380 Score: 256
Period size: 98 Copynumber: 1.9 Consensus size: 94
37593189 ACTATCAAAA
37593199 TCAAGGTCGATGCCATGTCCCAGACATGCTCTTACACTAGCTCTCACACATCTGTGCCGATACCA
1 TCAAGGTCGATGCCATGTCCCAGACATGCTCTTACACTAGCTCTCACA-ATCTG-GCCGAT-CCA
37593264 TGTCCCAGAAATGGTCTTACACTAGCTCTCGTC
63 TGTCCCAGAAAT-GTCTTACACTAGCTCTCGTC
* * * * * *
37593297 TCAATGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGT
1 TCAAGGTCGATGCCATGTCCCAGACATGCTCTTACACTAGCTCTCACAATCTGGCCGATCCATGT
**
37593362 CCCAGTCATGTCTTACACT
66 CCCAGAAATGTCTTACACT
37593381 GGAACACAAA
Statistics
Matches: 76, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
94 10 0.13
95 12 0.16
96 6 0.08
97 4 0.05
98 44 0.58
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.28
Consensus pattern (94 bp):
TCAAGGTCGATGCCATGTCCCAGACATGCTCTTACACTAGCTCTCACAATCTGGCCGATCCATGT
CCCAGAAATGTCTTACACTAGCTCTCGTC
Found at i:37593326 original size:48 final size:47
Alignment explanation
Indices: 37593159--37593380 Score: 211
Period size: 48 Copynumber: 4.6 Consensus size: 47
37593149 CATCAAGTTT
* * * *
37593159 ATGCCATGTCCCAAACATGGTCTTACACT-GACTATCAAAATCAAGGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTC--ACTCAATGTCG
* * *
37593208 ATGCCATGTCCCAGACATGCTCTTACACTAGCTCTCACACATCTGTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACTCA-ATGT--CG
* * *
37593258 ATACCATGTCCCAGAAATGGTCTTACACTAGCTCTCGTCTCAATGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC-ACTCAATGTCG
*
37593306 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA-T-AATGTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACTCAATGT---CG
*
37593354 ATG-CATGTCCCAGTCAT-GTCTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
37593381 GGAACACAAA
Statistics
Matches: 147, Mismatches: 18, Indels: 19
0.80 0.10 0.10
Matches are distributed among these distances:
45 5 0.03
46 11 0.07
47 16 0.11
48 42 0.29
49 31 0.21
50 39 0.27
51 3 0.02
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACTCAATGTCG
Found at i:37597079 original size:50 final size:49
Alignment explanation
Indices: 37597020--37597351 Score: 325
Period size: 50 Copynumber: 6.8 Consensus size: 49
37597010 TGATGCTAGG
*
37597020 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCT
1 GAGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCT
* * *
37597069 CGAGATATGAGAGCTAGTGTAAGACCATCTCTGGGACATGACATCAG-CT
1 -GAGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCT
* * * * *
37597118 -TGATAT--GTGTCAGTGTAAGACCATGTCTAGGACATGGCATCGGCACT
1 GAGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGC-CT
* * * *
37597165 GATAGATGAGAACCAGTGTAAGACCATGTCTGAGACATGGCATCAGCCT
1 GAGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCT
* * * * * * *
37597214 CGATATACGAGAGTCAGTGTAAGACCATGTTTGGGACATGACAT-TGACT
1 -GAGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCT
** * * * *
37597263 TTGATGTGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT-TGACT
1 GAGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCT
** * *
37597311 TTGATGTGTGAGCCAGTGTAAGACCATGTCTGGGACATGGC
1 GAGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGC
37597352 GTTGGCACCT
Statistics
Matches: 239, Mismatches: 37, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
45 30 0.13
47 7 0.03
48 83 0.35
49 7 0.03
50 112 0.47
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (49 bp):
GAGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCT
Found at i:37606257 original size:11 final size:11
Alignment explanation
Indices: 37606241--37606266 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
37606231 ACCAAGAGTC
37606241 AAAACGAGCCA
1 AAAACGAGCCA
37606252 AAAACGAGCCA
1 AAAACGAGCCA
37606263 AAAA
1 AAAA
37606267 AGGACAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.62, C:0.23, G:0.15, T:0.00
Consensus pattern (11 bp):
AAAACGAGCCA
Found at i:37607251 original size:13 final size:13
Alignment explanation
Indices: 37607233--37607259 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
37607223 TAGTTTAATC
37607233 AGTTAATTAGTTT
1 AGTTAATTAGTTT
37607246 AGTTAATTAGTTT
1 AGTTAATTAGTTT
37607259 A
1 A
37607260 ATAAACAACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (13 bp):
AGTTAATTAGTTT
Found at i:37613156 original size:29 final size:29
Alignment explanation
Indices: 37613114--37613170 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
37613104 CTATGGTTGG
37613114 GGGTTACCTGCATGGATAAAATTAAGGGT
1 GGGTTACCTGCATGGATAAAATTAAGGGT
37613143 GGGTTACCTGCATGGATAAAATTAAGGG
1 GGGTTACCTGCATGGATAAAATTAAGGG
37613171 GTGAGTTTGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.32, C:0.11, G:0.32, T:0.26
Consensus pattern (29 bp):
GGGTTACCTGCATGGATAAAATTAAGGGT
Found at i:37613481 original size:28 final size:28
Alignment explanation
Indices: 37613449--37613553 Score: 147
Period size: 28 Copynumber: 3.8 Consensus size: 28
37613439 CAGAACAGAG
* * *
37613449 ATTGTGACAGAGTCACCAGATACAGATA
1 ATTGTGGCAGAGCCACCAGAAACAGATA
*
37613477 ATTGTGGCAGGGCCACCAGAAACAGATA
1 ATTGTGGCAGAGCCACCAGAAACAGATA
* *
37613505 TTTGTGGTAGAGCCACCAGAAACAGATA
1 ATTGTGGCAGAGCCACCAGAAACAGATA
*
37613533 TTTGTGGCAGAGCCACCAGAA
1 ATTGTGGCAGAGCCACCAGAA
37613554 CGCTTCCTCC
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 69 1.00
ACGTcount: A:0.35, C:0.20, G:0.26, T:0.19
Consensus pattern (28 bp):
ATTGTGGCAGAGCCACCAGAAACAGATA
Found at i:37614702 original size:26 final size:25
Alignment explanation
Indices: 37614673--37614735 Score: 67
Period size: 25 Copynumber: 2.5 Consensus size: 25
37614663 AGATTCGGCT
*
37614673 ATAGAGGAAAAGAAGAAGAAGAGAAA
1 ATAGA-GAAAAGAAGAAGAAAAGAAA
* *
37614699 ATAGATGAAAAG-AGGAGAAAAGAAG
1 ATAGA-GAAAAGAAGAAGAAAAGAAA
37614724 A-AGAGAAAAGAA
1 ATAGAGAAAAGAA
37614736 TTGTCAAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
23 6 0.19
24 4 0.12
25 11 0.34
26 11 0.34
ACGTcount: A:0.65, C:0.00, G:0.30, T:0.05
Consensus pattern (25 bp):
ATAGAGAAAAGAAGAAGAAAAGAAA
Found at i:37616508 original size:37 final size:37
Alignment explanation
Indices: 37616458--37616570 Score: 199
Period size: 37 Copynumber: 3.1 Consensus size: 37
37616448 CTTTAGCTCA
* *
37616458 GACAAAATCTCCACACGAAGTTATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
37616495 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
*
37616532 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
37616569 GA
1 GA
37616571 ATATATTTCC
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 73 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.22
Consensus pattern (37 bp):
GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
Found at i:37616784 original size:46 final size:46
Alignment explanation
Indices: 37616716--37616852 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
37616706 TATATATCCA
* * * *
37616716 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
37616762 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
37616808 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
37616853 ATACATGTTC
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:37616887 original size:47 final size:47
Alignment explanation
Indices: 37616826--37616976 Score: 230
Period size: 47 Copynumber: 3.2 Consensus size: 47
37616816 ACACATTTCG
* * *
37616826 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
37616873 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCCCATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
** *
37616920 CATTGGCCATTCGGCCTTATCACGCATATGCATGGTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
37616967 CATTGGCCAT
1 CATTGGCCAT
37616977 GTGACACCCC
Statistics
Matches: 94, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 94 1.00
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.32
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:37619546 original size:47 final size:47
Alignment explanation
Indices: 37619495--37620034 Score: 675
Period size: 47 Copynumber: 11.1 Consensus size: 47
37619485 TTAGGATTTT
* * *
37619495 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGACA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
**
37619542 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCA
*
37619593 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
** * *
37619640 ATGTGATGAATGTGAACCTGTATATATATATGCGTGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAA-C-----ATGCATATGTGTGATAAGGCCGAATGGCCA
**
37619693 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCA
* *
37619744 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGACGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
** *
37619791 ATGTGATGAATGTGAACCTGTATATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-C-----ATGCATATGTGTGATAAGGCCGAATGGCCA
*
37619844 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
*
37619891 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* *
37619938 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * * *
37619985 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
37620032 ATG
1 ATG
37620035 CGAAACGTGT
Statistics
Matches: 440, Mismatches: 36, Indels: 34
0.86 0.07 0.07
Matches are distributed among these distances:
47 263 0.60
48 2 0.00
49 3 0.01
51 87 0.20
52 1 0.00
53 82 0.19
54 2 0.00
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:37619597 original size:24 final size:24
Alignment explanation
Indices: 37619569--37619644 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
37619559 CCGTATATAT
37619569 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
* * **
37619593 ATGTGATGA-ATGTG--AACAT-GCGT
1 ATGTG-TGATAAG-GCCGA-ATGGCCA
37619616 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
37619640 ATGTG
1 ATGTG
37619645 ATGAATGTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
22 4 0.11
23 12 0.32
24 17 0.46
25 4 0.11
ACGTcount: A:0.29, C:0.13, G:0.33, T:0.25
Consensus pattern (24 bp):
ATGTGTGATAAGGCCGAATGGCCA
Found at i:37619700 original size:151 final size:150
Alignment explanation
Indices: 37619517--37620034 Score: 817
Period size: 151 Copynumber: 3.5 Consensus size: 150
37619507 TGAACATGCG
* *
37619517 TATGTGTGATAAGGCCGAATGGACAATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGG
1 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCCG-ATATATATGTGTGATAAGG
37619582 CCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGAT
65 CCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGAT
37619647 GAATGTGAACCTGTATATATA
130 GAATGTGAACCTGTATATATA
*
37619668 TATGCGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGG
1 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCCG-ATATATATGTGTGATAAGG
*
37619733 CCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGACGAATGGCCAATGTGAT
65 CCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGAT
37619798 GAATGTGAACCTGTATATATA
130 GAATGTGAACCTGTATATATA
***
37619819 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA--C-ATGCGTATGTGTGATAAGGC
1 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCCGATATATATGTGTGATAAGGC
37619881 CGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
66 CGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
**
37619946 AATGTGAA-C---ATGCATA
131 AATGTGAACCTGTATATATA
* **
37619962 TAT--GAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGA-ATATATGTG-G-TAAGGC
1 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCCGATATATATGTGTGATAAGGC
*
37620022 CGAATGGCTAATG
66 CGAATGGCCAATG
37620035 CGAAACGTGT
Statistics
Matches: 347, Mismatches: 17, Indels: 16
0.91 0.04 0.04
Matches are distributed among these distances:
141 53 0.15
142 1 0.00
143 14 0.04
144 1 0.00
146 1 0.00
147 89 0.26
149 1 0.00
151 187 0.54
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (150 bp):
TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCCGATATATATGTGTGATAAGGC
CGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
AATGTGAACCTGTATATATA
Found at i:37619860 original size:100 final size:97
Alignment explanation
Indices: 37619517--37620034 Score: 642
Period size: 100 Copynumber: 5.3 Consensus size: 97
37619507 TGAACATGCG
* **
37619517 TATGTGTGATAAGGCCGAATGGACAATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGG
***
37619582 CCGAATGGCCAATGTGATGAATGTGAA-C--ATGCG
62 CCGAATGGCCAATGTGATGAATGTGAACCGTATATA
** *
37619615 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATATATGCGTGATAA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-C-----ATGCATATGTGTGATAA
*
37619680 GGTCGAATGGCCAATGTGATGAATGTGAACCCGTATATA
60 GGCCGAATGGCCAATGTGATGAATGTGAA-CCGTATATA
* *
37619719 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGACGA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGA
37619784 ATGGCCAATGTGATGAATGTGAACCTGTATATATA
66 ATGGCCAATGTGATGAATGTGAACC-G--TATATA
* *
37619819 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGA
***
37619884 ATGGCCAATGTGATGAATGTGAA-C--ATGCG
66 ATGGCCAATGTGATGAATGTGAACCGTATATA
* *
37619913 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGA
*
37619978 ATGGCCAATGTGATGAATGTGAA-CATGA-ATA
66 ATGGCCAATGTGATGAATGTGAACCGT-ATATA
*
37620009 TATGTG-G-TAAGGCCGAATGGCTAATG
1 TATGTGTGATAAGGCCGAATGGCCAATG
37620035 CGAAACGTGT
Statistics
Matches: 382, Mismatches: 25, Indels: 30
0.87 0.06 0.07
Matches are distributed among these distances:
94 105 0.27
95 1 0.00
96 6 0.02
97 5 0.01
98 82 0.21
99 1 0.00
100 137 0.36
102 1 0.00
103 1 0.00
104 43 0.11
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (97 bp):
TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGA
ATGGCCAATGTGATGAATGTGAACCGTATATA
Found at i:37619871 original size:23 final size:23
Alignment explanation
Indices: 37619844--37619918 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
37619834 CGAATGGCCA
37619844 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
* * **
37619867 ATGTG-TGATAAG-G-CCGAATGGCCA
1 ATGTGATGA-ATGTGAAC--AT-GCGT
37619891 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
37619914 ATGTG
1 ATGTG
37619919 TGATAAGGCC
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
21 1 0.03
22 4 0.11
23 16 0.43
24 11 0.30
25 4 0.11
26 1 0.03
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATGTGAACATGCGT
Found at i:37620097 original size:46 final size:46
Alignment explanation
Indices: 37620008--37620098 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
37619998 GAACATGAAT
* * * *
37620008 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
* * *
37620054 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATG
37620099 TGTATATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.33, C:0.10, G:0.32, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
Found at i:37620105 original size:141 final size:140
Alignment explanation
Indices: 37619495--37620083 Score: 583
Period size: 151 Copynumber: 4.0 Consensus size: 140
37619485 TTAGGATTTT
* * * * * *
37619495 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGACAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* * *
37619560 CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
66 TG-A-ATATA--TGTGATAAGGCCGAATGGCCAATGCGA-GAACGTGAACATGCGTATGTGTGAT
* *
37619625 AAGGCCGAATGGCCA
126 AAAGCCAAATGGCCA
** * *
37619640 ATGTGATGAATGTGAACCTGTATATATATATGCGTGATAAGGTCGAATGGCCAATGTGATGAATG
1 ATGTGATGAATGTGAA-C---ATGCATATAT--GAGATAAGGCCGAATGGCCAATGTGATGAATG
** * *
37619705 TGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATG
60 TGAACATG-A-ATATA--TGTGATAAGGCCGAATGGCCAATGCGA-GAACGTGAACATGCGTATG
* * *
37619770 TGTGATAAGGACGAATGGCCA
120 TGTGATAAAGCCAAATGGCCA
** *
37619791 ATGTGATGAATGTGAACCTGTATATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATG
1 ATGTGATGAATGTGAA-C---ATGCATATAT--GAGATAAGGCCGAATGGCCAATGTGATGAATG
** * * *
37619856 TGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTG
60 TGAACATGAATATATGTGATAAGGCCGAATGGCCAATGCGA-GAACGTGAACATGCGTATGTGTG
* *
37619921 ATAAGGCCGAATGGCCA
124 ATAAAGCCAAATGGCCA
37619938 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* * *
37620003 TGAATATATGTGGTAAGGCCGAATGGCTAATGCGA-AACGTGTATGAGATG-GATATGTG-G-TA
66 TGAATATATGTGATAAGGCCGAATGGCCAATGCGAGAACGTG-A--ACATGCG-TATGTGTGATA
*
37620064 AAGCCAAATGGCTA
127 AAGCCAAATGGCCA
37620078 ATGTGA
1 ATGTGA
37620084 GATATGTACG
Statistics
Matches: 405, Mismatches: 29, Indels: 25
0.88 0.06 0.05
Matches are distributed among these distances:
139 5 0.01
140 20 0.05
141 68 0.17
142 10 0.02
143 8 0.02
145 15 0.04
146 2 0.00
147 83 0.20
149 9 0.02
151 185 0.46
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (140 bp):
ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGAATATATGTGATAAGGCCGAATGGCCAATGCGAGAACGTGAACATGCGTATGTGTGATAAAGC
CAAATGGCCA
Found at i:37620295 original size:37 final size:37
Alignment explanation
Indices: 37620245--37620426 Score: 328
Period size: 37 Copynumber: 4.9 Consensus size: 37
37620235 GGAAATATAT
37620245 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
37620282 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
37620319 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
37620356 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
37620393 TCCGGGTAAGACCCGATAACTTCATGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
37620427 TCGTCTGAGC
Statistics
Matches: 140, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 140 1.00
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:37621344 original size:51 final size:47
Alignment explanation
Indices: 37621241--37621431 Score: 292
Period size: 47 Copynumber: 4.0 Consensus size: 47
37621231 GTGTGTTACA
37621241 GGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATT
1 GGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATT
***
37621288 GGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATT
1 GGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCACATT
*
37621339 GGCCATTCGGCCTTATCACACATACGCATGTTCATATTCATCACATT
1 GGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATT
* *
37621386 GGCCATTCAGCCTTATCACACATACGCATGTTCGCATTCATCACAT
1 GGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACAT
37621432 AAAATCCTAA
Statistics
Matches: 130, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
47 86 0.66
51 44 0.34
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.30
Consensus pattern (47 bp):
GGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATT
Found at i:37624026 original size:15 final size:16
Alignment explanation
Indices: 37623985--37624016 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
37623975 TCCCCCACTT
37623985 AAGAAATTTTCGTCCC
1 AAGAAATTTTCGTCCC
37624001 AAGAAATTTTCGTCCC
1 AAGAAATTTTCGTCCC
37624017 CGAAAATTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.31
Consensus pattern (16 bp):
AAGAAATTTTCGTCCC
Found at i:37625353 original size:40 final size:40
Alignment explanation
Indices: 37625308--37625938 Score: 1010
Period size: 40 Copynumber: 15.8 Consensus size: 40
37625298 CCAGCATGAT
** *
37625308 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
* * *
37625348 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
* * *
37625388 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
* *
37625428 TGCTCTTTGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
37625468 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
* * * *
37625508 TGCTCTTCGAGACTTAGCCCGGATATAACACTAGCATGAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
* * * *
37625548 TGCTCTTTGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
37625588 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
*
37625628 TGCTCTTCGGGATTTAGCCCGGAAATATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
*
37625668 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
* *
37625708 TGCTCTTTGGGATTTAGCCCGGATATATTACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
* *
37625748 TGCTCTTCGAGATTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
*
37625788 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
*
37625828 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
*
37625868 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGTACGAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
37625908 TGCTCTTCGGGATTTAGCCCGGATATATCAC
1 TGCTCTTCGGGATTTAGCCCGGATATATCAC
37625939 GCTCAATTCT
Statistics
Matches: 557, Mismatches: 34, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 557 1.00
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
Found at i:37627255 original size:37 final size:37
Alignment explanation
Indices: 37627205--37627317 Score: 199
Period size: 37 Copynumber: 3.1 Consensus size: 37
37627195 CTTTAGCTCA
*
37627205 GACAAAATCTCCACACGAAGTTATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTTATCGGGTCTTACCCG
*
37627242 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTTATCGGGTCTTACCCG
*
37627279 GACATAATCTCCACACGTAGTTATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTTATCGGGTCTTACCCG
37627316 GA
1 GA
37627318 ATATATTTCC
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 72 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.23
Consensus pattern (37 bp):
GACAAAATCTCCACACGTAGTTATCGGGTCTTACCCG
Found at i:37627514 original size:46 final size:46
Alignment explanation
Indices: 37627461--37627597 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
37627451 TATATATACA
* * *
37627461 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACATATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
37627507 CATCTCATACATGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACATATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * *
37627553 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACATATTTCGCATTAGCCATTCGGCTTTACCACATAT
37627598 ATACATGTTC
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.35
Consensus pattern (46 bp):
CATCTCATACATATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:37627634 original size:47 final size:47
Alignment explanation
Indices: 37627571--37628004 Score: 652
Period size: 47 Copynumber: 9.1 Consensus size: 47
37627561 ACACATTTCG
* * * **
37627571 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * * *
37627618 CATTGGACATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
37627665 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
37627712 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ** *
37627759 CATTGGCCATTCGGCCTTATCACGCATATATATACAAGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C--ACATACGCATGTTCACATTCATCA
37627810 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
***
37627857 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
37627908 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
37627955 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
37628002 CAT
1 CAT
37628005 AAAATCCTAA
Statistics
Matches: 356, Mismatches: 23, Indels: 16
0.90 0.06 0.04
Matches are distributed among these distances:
47 268 0.75
49 2 0.01
51 86 0.24
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:37627836 original size:98 final size:97
Alignment explanation
Indices: 37627571--37628004 Score: 652
Period size: 98 Copynumber: 4.5 Consensus size: 97
37627561 ACACATTTCG
* * *
37627571 CATTAGCCATTCGGCC-T-T-ACCACATATATACATGTTCACATTCATCACATTGGACATTCGGC
1 CATTGGCCATTCGGCCTTATCACCATATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* * *
37627633 CTTATCTCATATATGCATGTTCACATTCATCA
66 CTTATCACACATACGCATGTTCACATTCATCA
* **
37627665 CATTGGCCATTCGGCCTTATCA-C--ACATACGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CATTGGCCATTCGGCCTTATCACCATATATATACATGTTCACATTCATCACATTGGCCATTCGGC
37627727 CTTATCACACATACGCATGTTCACATTCATCA
66 CTTATCACACATACGCATGTTCACATTCATCA
*
37627759 CATTGGCCATTCGGCCTTATCACGCATATATATACAAGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCAC-CATATATATACATGTTCACATTCATCACATTGGCCATTCGG
37627824 CCTTATCACACATACGCATGTTCACATTCATCA
65 CCTTATCACACATACGCATGTTCACATTCATCA
**
37627857 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCAC-CATATATATACATGTTCACATTCATCACATTGGCCATTCGG
37627922 CCTTATCACACATACGCATGTTCACATTCATCA
65 CCTTATCACACATACGCATGTTCACATTCATCA
* **
37627955 CATTGGCCATTCGGCCTTATCA-C--ACATACGCATGTTCACATTCATCACAT
1 CATTGGCCATTCGGCCTTATCACCATATATATACATGTTCACATTCATCACAT
37628005 AAAATCCTAA
Statistics
Matches: 313, Mismatches: 20, Indels: 14
0.90 0.06 0.04
Matches are distributed among these distances:
94 123 0.39
95 1 0.00
96 4 0.01
97 1 0.00
98 184 0.59
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.31
Consensus pattern (97 bp):
CATTGGCCATTCGGCCTTATCACCATATATATACATGTTCACATTCATCACATTGGCCATTCGGC
CTTATCACACATACGCATGTTCACATTCATCA
Found at i:37627840 original size:145 final size:142
Alignment explanation
Indices: 37627571--37628004 Score: 683
Period size: 145 Copynumber: 3.0 Consensus size: 142
37627561 ACACATTTCG
* * * *
37627571 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGACATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
*
37627636 ATC-TCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGT
66 ATCACCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGT
37627700 TCACATTCATCA
131 TCACATTCATCA
**
37627712 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
* *
37627777 ATCACGCATATATATACAAGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCA
66 ATCAC-C--ATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCA
37627842 TGTTCACATTCATCA
128 TGTTCACATTCATCA
*
37627857 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATACAT----GTTCACATTCATCACATTGGCCATTCGG
* *
37627922 CCTTATCA-CACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGC
62 CCTTATCACCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGC
37627986 ATGTTCACATTCATCA
127 ATGTTCACATTCATCA
37628002 CAT
1 CAT
37628005 AAAATCCTAA
Statistics
Matches: 269, Mismatches: 16, Indels: 12
0.91 0.05 0.04
Matches are distributed among these distances:
141 62 0.23
143 1 0.00
145 169 0.63
147 1 0.00
149 36 0.13
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.31
Consensus pattern (142 bp):
CATTGGCCATTCGGCCTTATCACACATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGT
TCACATTCATCA
Found at i:37628005 original size:23 final size:23
Alignment explanation
Indices: 37627930--37628005 Score: 59
Period size: 23 Copynumber: 3.3 Consensus size: 23
37627920 GGCCTTATCA
37627930 CACATACGCATGTTCACATTCAT
1 CACATACGCATGTTCACATTCAT
** * *
37627953 CACATTGGCCA--TTCGGCCTT-AT
1 CACATACG-CATGTTC-ACATTCAT
37627975 CACACATACGCATGTTCACATTCAT
1 --CACATACGCATGTTCACATTCAT
37628000 CACATA
1 CACATA
37628006 AAATCCTAAA
Statistics
Matches: 38, Mismatches: 8, Indels: 14
0.63 0.13 0.23
Matches are distributed among these distances:
22 5 0.13
23 17 0.45
24 11 0.29
25 5 0.13
ACGTcount: A:0.29, C:0.32, G:0.11, T:0.29
Consensus pattern (23 bp):
CACATACGCATGTTCACATTCAT
Found at i:37630652 original size:3 final size:3
Alignment explanation
Indices: 37630644--37630673 Score: 51
Period size: 3 Copynumber: 9.7 Consensus size: 3
37630634 AAACCTACGA
37630644 AAT AAT AAT AAT AAAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT -AAT AAT AAT AAT AAT AA
37630674 CATCCAAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 23 0.88
4 3 0.12
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:37630661 original size:13 final size:13
Alignment explanation
Indices: 37630643--37630670 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
37630633 TAAACCTACG
37630643 AAATAATAATAAT
1 AAATAATAATAAT
37630656 AAATAATAATAAT
1 AAATAATAATAAT
37630669 AA
1 AA
37630671 TAACATCCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (13 bp):
AAATAATAATAAT
Found at i:37632745 original size:28 final size:28
Alignment explanation
Indices: 37632682--37632769 Score: 108
Period size: 28 Copynumber: 3.2 Consensus size: 28
37632672 AGCAAGGCTG
* *
37632682 CCAG-AACAGAT-ATTGTGACAGAGTCA
1 CCAGAAACAGATAATTGTGGCAGAGCCA
* * *
37632708 CTAGATACAGATAATTGTGGCAGGGCCA
1 CCAGAAACAGATAATTGTGGCAGAGCCA
*
37632736 CCAGAAACAGATATTTGTGGCAGAGCCA
1 CCAGAAACAGATAATTGTGGCAGAGCCA
37632764 CCAGAA
1 CCAGAA
37632770 CGCTTCCTCC
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
26 3 0.06
27 6 0.12
28 42 0.82
ACGTcount: A:0.36, C:0.20, G:0.25, T:0.18
Consensus pattern (28 bp):
CCAGAAACAGATAATTGTGGCAGAGCCA
Found at i:37634895 original size:16 final size:16
Alignment explanation
Indices: 37634874--37634907 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
37634864 TAAACCTACG
*
37634874 AAATAATAATAATAAT
1 AAATAATAATAACAAT
37634890 AAATAATAATAACAAT
1 AAATAATAATAACAAT
37634906 AA
1 AA
37634908 CATCCAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (16 bp):
AAATAATAATAACAAT
Found at i:37636869 original size:79 final size:81
Alignment explanation
Indices: 37636767--37636950 Score: 213
Period size: 79 Copynumber: 2.3 Consensus size: 81
37636757 GCTCCTCGTT
* *
37636767 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTTAACC
*
37636829 CGGAT-TTAGTAAC-TCGCA
63 CGGATATT-GTAACTTAGCA
* **
37636847 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACGAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
*
37636911 ATATTGTCACTTAGCA
66 ATATTGTAACTTAGCA
37636927 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37636951 CATCATCCAA
Statistics
Matches: 91, Mismatches: 7, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
78 14 0.15
79 55 0.60
80 22 0.24
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATTGTAACTTAGCA
Found at i:37636884 original size:39 final size:41
Alignment explanation
Indices: 37636767--37636950 Score: 190
Period size: 40 Copynumber: 4.6 Consensus size: 41
37636757 GCTCCTCGTT
* *
37636767 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAATCTCGCA
* *
37636807 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAA-CTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
37636847 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
* * * *
37636886 CGAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAATC-TCGCA
37636927 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37636951 CATCATCCAA
Statistics
Matches: 127, Mismatches: 8, Indels: 19
0.82 0.05 0.12
Matches are distributed among these distances:
38 3 0.02
39 47 0.37
40 66 0.52
41 11 0.09
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
Found at i:37641223 original size:13 final size:13
Alignment explanation
Indices: 37641205--37641229 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37641195 GTTTAATCAA
37641205 TTAATTAGTTTAG
1 TTAATTAGTTTAG
37641218 TTAATTAGTTTA
1 TTAATTAGTTTA
37641230 ATAAACAACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTAATTAGTTTAG
Found at i:37646144 original size:43 final size:43
Alignment explanation
Indices: 37646095--37646267 Score: 172
Period size: 43 Copynumber: 4.0 Consensus size: 43
37646085 GATTTTCGAG
* * *
37646095 ATGTGATTACATGTAAGACCATGTCTGGGACACTAGCATTGTAT
1 ATGTGATTACATGTAAGACCATATCTGGGACA-TGGCATCGTAT
*
37646139 -TGTGATTACGTGTAAGACCATATCTGGGACATTGGCATCGT-T
1 ATGTGATTACATGTAAGACCATATCTGGGACA-TGGCATCGTAT
* * * * * *
37646181 ATATGATTTCGTGTAAGTCCTTGTCTGGGACAGTGGCATCG-AT
1 ATGTGATTACATGTAAGACCATATCTGGGACA-TGGCATCGTAT
* * * *
37646224 ACGTGATAACATGTAAGACCATATCTGGGATATGGCATTGTAT
1 ATGTGATTACATGTAAGACCATATCTGGGACATGGCATCGTAT
37646267 A
1 A
37646268 AGCTTTATGT
Statistics
Matches: 105, Mismatches: 21, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
42 8 0.08
43 97 0.92
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (43 bp):
ATGTGATTACATGTAAGACCATATCTGGGACATGGCATCGTAT
Found at i:37655341 original size:29 final size:26
Alignment explanation
Indices: 37655309--37655379 Score: 70
Period size: 26 Copynumber: 2.6 Consensus size: 26
37655299 GTGATATACA
* *
37655309 AAATGATTATGTGCTAAATGTGTAAAATG
1 AAATGATTATATG--AAATG-GTAAAACG
*
37655338 AAATGGTTATATGAAATGGTAAAACG
1 AAATGATTATATGAAATGGTAAAACG
* *
37655364 AAATGGTTTTATGAAA
1 AAATGATTATATGAAA
37655380 ATAGATGTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
26 22 0.58
27 5 0.13
29 11 0.29
ACGTcount: A:0.44, C:0.03, G:0.21, T:0.32
Consensus pattern (26 bp):
AAATGATTATATGAAATGGTAAAACG
Found at i:37655353 original size:13 final size:13
Alignment explanation
Indices: 37655335--37655379 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
37655325 AATGTGTAAA
37655335 ATGAAATGGTTAT
1 ATGAAATGGTTAT
* *
37655348 ATGAAATGGTAAA
1 ATGAAATGGTTAT
* *
37655361 ACGAAATGGTTTT
1 ATGAAATGGTTAT
37655374 ATGAAA
1 ATGAAA
37655380 ATAGATGTAT
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.44, C:0.02, G:0.22, T:0.31
Consensus pattern (13 bp):
ATGAAATGGTTAT
Found at i:37655381 original size:27 final size:27
Alignment explanation
Indices: 37655324--37655379 Score: 87
Period size: 26 Copynumber: 2.1 Consensus size: 27
37655314 ATTATGTGCT
*
37655324 AAATGTGTAAAATGAAATGGTTATATG
1 AAATGTGTAAAACGAAATGGTTATATG
*
37655351 AAATG-GTAAAACGAAATGGTTTTATG
1 AAATGTGTAAAACGAAATGGTTATATG
37655377 AAA
1 AAA
37655380 ATAGATGTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 22 0.81
27 5 0.19
ACGTcount: A:0.46, C:0.02, G:0.21, T:0.30
Consensus pattern (27 bp):
AAATGTGTAAAACGAAATGGTTATATG
Found at i:37670902 original size:13 final size:14
Alignment explanation
Indices: 37670864--37670926 Score: 53
Period size: 13 Copynumber: 4.6 Consensus size: 14
37670854 AGAAAAAAAG
37670864 AGAAAAA-AT-AAA
1 AGAAAAAGATGAAA
*
37670876 AAAATAAAG-TGAAA
1 AGAA-AAAGATGAAA
*
37670890 AGAAAACGA-GAAA
1 AGAAAAAGATGAAA
*
37670903 ACAAAAAGATGAAAA
1 AGAAAAAGATG-AAA
37670918 AGAAAAAGA
1 AGAAAAAGA
37670927 ATGTGAGAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
12 3 0.08
13 18 0.46
14 7 0.18
15 11 0.28
ACGTcount: A:0.75, C:0.03, G:0.16, T:0.06
Consensus pattern (14 bp):
AGAAAAAGATGAAA
Found at i:37676699 original size:79 final size:81
Alignment explanation
Indices: 37676565--37676747 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
37676555 GAATGATGTT
*
37676565 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTG
*
37676629 TGCGAGATACTA-ATTC
66 TGCGAGATACTATA-AC
* * * **
37676645 CGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATTT
*
37676707 GTGCGAGTTACTATAAC
65 GTGCGAGATACTATAAC
*
37676724 CGGGCTATGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
37676748 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.64
80 31 0.34
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTG
TGCGAGATACTATAAC
Done.