Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 118 of 356
Found at i:37676761 original size:40 final size:40
Alignment explanation
Indices: 37676565--37676747 Score: 214
Period size: 40 Copynumber: 4.6 Consensus size: 40
37676555 GAATGATGTT
* * * *
37676565 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAAC
* * *
37676605 CGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTC
1 CGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-AC
37676645 CGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-C
*
37676684 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAC
*
37676724 CGGGCTATGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
37676748 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 80 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAC
Found at i:37676769 original size:79 final size:79
Alignment explanation
Indices: 37676616--37676780 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
37676606 GGACTAAGAT
* **
37676616 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
37676681 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
37676695 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
37676758 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
37676774 CCGAAGG
1 CCGAAGG
37676781 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:37680534 original size:39 final size:39
Alignment explanation
Indices: 37680480--37680751 Score: 436
Period size: 39 Copynumber: 7.0 Consensus size: 39
37680470 AAGACACTGA
* *
37680480 AAATGTATCCAGGCTAAAGTCCCGTAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
37680519 AAATGTATCTGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
37680558 AAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* * *
37680597 AAATGTATCCAGACTAAAGTCCCGCAGGCTTCGTGCTAG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
37680636 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
37680675 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
37680714 AAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTGCTG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
37680752 ATAATATAAT
Statistics
Matches: 215, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 215 1.00
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (39 bp):
AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
Found at i:37689485 original size:55 final size:55
Alignment explanation
Indices: 37689424--37689600 Score: 246
Period size: 55 Copynumber: 3.2 Consensus size: 55
37689414 ATATTAAGTC
* * *
37689424 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* *
37689479 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * * *
37689534 CGCACACTTAGTGCTACATATTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAA-TCAAACT
37689590 CGCACACTTAG
1 CGCACACTTAG
37689601 CGCCAATCTC
Statistics
Matches: 109, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
55 93 0.85
56 16 0.15
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:37689488 original size:28 final size:27
Alignment explanation
Indices: 37689424--37689575 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
37689414 ATATTAAGTC
* *
37689424 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
37689451 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*
37689479 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
37689506 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
37689534 CGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
37689561 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37689576 GCACAATTTA
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:37697646 original size:55 final size:55
Alignment explanation
Indices: 37697585--37697761 Score: 246
Period size: 55 Copynumber: 3.2 Consensus size: 55
37697575 ATATTAAGTC
* * *
37697585 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* *
37697640 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * * *
37697695 CGCACACTTAGTGCTACATATTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAA-TCAAACT
37697751 CGCACACTTAG
1 CGCACACTTAG
37697762 CGCCAATCTC
Statistics
Matches: 109, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
55 93 0.85
56 16 0.15
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:37697649 original size:28 final size:27
Alignment explanation
Indices: 37697585--37697736 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
37697575 ATATTAAGTC
* *
37697585 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
37697612 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*
37697640 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
37697667 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
37697695 CGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
37697722 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37697737 GCACAATTTA
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:37700197 original size:16 final size:16
Alignment explanation
Indices: 37700176--37700207 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
37700166 GCAAATCTTG
37700176 AAATGCCAAAAAGCCA
1 AAATGCCAAAAAGCCA
37700192 AAATGCCAAAAAGCCA
1 AAATGCCAAAAAGCCA
37700208 GAAGTTTGGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.25, G:0.12, T:0.06
Consensus pattern (16 bp):
AAATGCCAAAAAGCCA
Found at i:37700475 original size:28 final size:28
Alignment explanation
Indices: 37700421--37700541 Score: 134
Period size: 28 Copynumber: 4.3 Consensus size: 28
37700411 GATTGCATGA
* *
37700421 ATATGAATGTGATTGGGCTTGACGGGCC
1 ATATGAATGTGATTGGGCCTGATGGGCC
* * *
37700449 ATATGAAAGTGACTAGGCCTGATGGGCC
1 ATATGAATGTGATTGGGCCTGATGGGCC
* *
37700477 ATATGAATGTGATTGGGCCCGATAGGCC
1 ATATGAATGTGATTGGGCCTGATGGGCC
* * *
37700505 ATATGAATGAGATTCGGCCTGAAGGGGCC
1 ATATGAATGTGATTGGGCCTG-ATGGGCC
*
37700534 AAATGAAT
1 ATATGAAT
37700542 AAGTATGGAT
Statistics
Matches: 76, Mismatches: 16, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
28 64 0.84
29 12 0.16
ACGTcount: A:0.28, C:0.16, G:0.32, T:0.24
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCCTGATGGGCC
Found at i:37705127 original size:28 final size:28
Alignment explanation
Indices: 37705094--37705198 Score: 129
Period size: 28 Copynumber: 3.8 Consensus size: 28
37705084 ATTGCATGAC
*
37705094 TATGAATGTGATTGGGCCTAACAGGCCA
1 TATGAATGTGATTGGGCCTAATAGGCCA
* * * *
37705122 TATGAAAGTGATTGGGCCTGATGGGCTA
1 TATGAATGTGATTGGGCCTAATAGGCCA
**
37705150 TATGAATGTGATTGGGCCCGATAGGCCA
1 TATGAATGTGATTGGGCCTAATAGGCCA
**
37705178 TATGAATCAGATTGGGCCTAA
1 TATGAATGTGATTGGGCCTAA
37705199 AGGGGCCAAA
Statistics
Matches: 64, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 64 1.00
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.27
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTAATAGGCCA
Found at i:37708563 original size:68 final size:64
Alignment explanation
Indices: 37708447--37708705 Score: 238
Period size: 68 Copynumber: 3.9 Consensus size: 64
37708437 TGGATGATAC
** * * *
37708447 AGATAGTATGTAGCTAGGTCACATGTATGGTGCTGAGTGCACATCATGT-GTACAAGAGAGCTAC
1 AGATA-TATGTAGCTAGGTCACATGGGTGGTACTGAGTGTACACCATGTAG-ACAAGAGAGCTAC
37708511 AAG
64 --G
* *
37708514 ACATTATGATGTAGCTAGGTCACATGGGTGATACT-ATGTGTACACCATGTAGACAAGAGAGCTA
1 AGA-TAT-ATGTAGCTAGGTCACATGGGTGGTACTGA-GTGTACACCATGTAGACAAGAGAGCTA
37708578 CG
63 CG
* * * * ** *
37708580 GGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTA
1 AGATATATGTAGCTAGGTCACATGGGTGGTACTGAGT---GTACACCATGTAGACAAGAGAGCTA
37708645 CG
63 CG
* * *
37708647 AGATAAAT-TGGCTAGGTCACATGGGTGGTACTGAGTGTTCACCATGT-GTACAAGAGAGC
1 AGATATATGTAGCTAGGTCACATGGGTGGTACTGAGTGTACACCATGTAG-ACAAGAGAGC
37708706 CGAACTATAT
Statistics
Matches: 158, Mismatches: 25, Indels: 22
0.77 0.12 0.11
Matches are distributed among these distances:
62 1 0.01
63 19 0.12
64 24 0.15
65 4 0.03
66 24 0.15
67 36 0.23
68 49 0.31
69 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24
Consensus pattern (64 bp):
AGATATATGTAGCTAGGTCACATGGGTGGTACTGAGTGTACACCATGTAGACAAGAGAGCTACG
Found at i:37725512 original size:39 final size:40
Alignment explanation
Indices: 37725467--37725638 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
37725457 GCTCCTCGTT
* * *
37725467 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
37725507 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
37725546 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
37725586 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
37725626 CAAATGCCTTCGG
1 CAAATGCCTTCGG
37725639 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:37725567 original size:40 final size:39
Alignment explanation
Indices: 37725469--37725691 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
37725459 TCCTCGTTCA
* * * *
37725469 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
37725508 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
37725547 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
37725587 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
37725627 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
37725668 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
37725692 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:37725651 original size:80 final size:79
Alignment explanation
Indices: 37725467--37725691 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
37725457 GCTCCTCGTT
* * * * *
37725467 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
37725531 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
37725546 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
37725611 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
37725626 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
37725690 GA
63 GA
37725692 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:37725700 original size:41 final size:41
Alignment explanation
Indices: 37725623--37725700 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
37725613 TTTGTATCTC
* * *
37725623 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
37725664 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
37725701 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:37745775 original size:40 final size:40
Alignment explanation
Indices: 37745705--37745880 Score: 196
Period size: 40 Copynumber: 4.5 Consensus size: 40
37745695 AAACCAAGTA
** * *
37745705 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATA-ATAACTCGCACAAATG
* * * * * *
37745744 CATTTGAGACTTAGCTCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
*
37745784 CCTTCGGGACTTAGCCCGGTTATAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
* *
37745824 CCTTCGGGACTTAGCCCGGATATAATAACTCACACAATTG
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
*
37745864 CCTTCGAG-CTTAGCCCG
1 CCTTCGGGACTTAGCCCG
37745881 AAATTAGTCA
Statistics
Matches: 117, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 19 0.16
40 98 0.84
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
Found at i:37749875 original size:41 final size:42
Alignment explanation
Indices: 37749793--37749893 Score: 107
Period size: 41 Copynumber: 2.4 Consensus size: 42
37749783 TTTTATCAAA
* * * * *
37749793 TCACTGGCATTTAGCCTGCTAGGTTTTAAACTCGAGTTCA-T
1 TCACCGGCATTTAGCCTGCTAAGCTTGAAACCCGAGTTCATT
*
37749834 TCACCGGCATTTCGCCTGCTAAGCTTGAAACCCGA-TATCATT
1 TCACCGGCATTTAGCCTGCTAAGCTTGAAACCCGAGT-TCATT
*
37749876 TCACCAGCATTATAGCCT
1 TCACCGGCATT-TAGCCT
37749894 ACTAGGCTCG
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
40 1 0.02
41 32 0.65
42 11 0.22
43 5 0.10
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.32
Consensus pattern (42 bp):
TCACCGGCATTTAGCCTGCTAAGCTTGAAACCCGAGTTCATT
Found at i:37753991 original size:40 final size:40
Alignment explanation
Indices: 37753891--37754115 Score: 267
Period size: 40 Copynumber: 5.7 Consensus size: 40
37753881 GCTCCTCGTT
* * ** *
37753891 CAAATGCCTTCGGGACATATCCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
*
37753931 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
37753970 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
*
37754010 CGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
* ** * * * * *
37754050 CGAATGCCTTTAGAACTTAATCCGGATATATTC-ACTTAGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTA-ACAAC-TCGCA
*
37754091 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
37754116 CAGCATTCAA
Statistics
Matches: 163, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
39 35 0.21
40 120 0.74
41 8 0.05
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
Found at i:37768635 original size:38 final size:38
Alignment explanation
Indices: 37768524--37768687 Score: 211
Period size: 38 Copynumber: 4.3 Consensus size: 38
37768514 ATATTCGATG
*
37768524 TATATCCGGGTTAAATCCCGCAGACTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * * *
37768562 TATATCTGGGCTTAAAGACCCGCAGGCTTCATGCTGGTAA
1 TATATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAT
*
37768602 AATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * * *
37768640 TATATCAGGGATAAATCCCGCAGGCCTAGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
37768678 TATATTCGGG
1 TATATCCGGG
37768688 CCTTCGTGCT
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
38 70 0.65
39 10 0.09
40 27 0.25
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
Found at i:37768757 original size:43 final size:43
Alignment explanation
Indices: 37768680--37768761 Score: 119
Period size: 43 Copynumber: 1.9 Consensus size: 43
37768670 GCTGGTATTA
* * * **
37768680 TATTCGGGCCTTCGTGCTTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCAGGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGATGTG
37768723 TATTCAGGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGA
1 TATTCAGGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGA
37768762 AATGATATGT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.13, C:0.24, G:0.33, T:0.29
Consensus pattern (43 bp):
TATTCAGGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGATGTG
Found at i:37769152 original size:45 final size:44
Alignment explanation
Indices: 37769078--37769204 Score: 118
Period size: 45 Copynumber: 2.9 Consensus size: 44
37769068 TTGACTTGAT
* * * ** *
37769078 TATTCGGGCCTTTGAGCTTAGCAAACTATAATACCGGTGAGATAC
1 TATTTGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA-AC
*
37769123 TATTTGGGCCTTCGAGCCTAGCAGGCTATAATGCCAGT--GAAC
1 TATTTGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGAAC
* *
37769165 TGATATTGGGCC-TCGAGCCTAACAGGCGA-AATGCCGGTGA
1 T-AT-TTGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
37769205 TTTGAGAAAA
Statistics
Matches: 68, Mismatches: 10, Indels: 9
0.78 0.11 0.10
Matches are distributed among these distances:
42 11 0.16
43 19 0.28
44 7 0.10
45 31 0.46
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (44 bp):
TATTTGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGAAC
Found at i:37770746 original size:25 final size:24
Alignment explanation
Indices: 37770714--37770765 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 24
37770704 TGGAGGACCT
* *
37770714 TACCATTTATAGCTCATAAGAGCA
1 TACCATTTAGAGATCATAAGAGCA
* *
37770738 TACCGATTTAGAGATCGTATGAGCA
1 TACC-ATTTAGAGATCATAAGAGCA
37770763 TAC
1 TAC
37770766 ACGTACAGGA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
24 4 0.17
25 19 0.83
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (24 bp):
TACCATTTAGAGATCATAAGAGCA
Found at i:37773709 original size:46 final size:45
Alignment explanation
Indices: 37773511--37773709 Score: 148
Period size: 46 Copynumber: 4.3 Consensus size: 45
37773501 GTAATTTGTG
* *
37773511 TGAGCTAGTGTAAGACCATGTCTGGGACATGGCTTTGGCATTGAGACA
1 TGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCTTCGAC-TTGAGACA
* * * * * * *
37773559 AGTGCTAGTGTAAGACATGTCTAGGACATGCATCAACCTCAGGACA
1 TGAGCTAGTGTAAGACATGTCTGGGACATGCTTCGACTTGA-GACA
* * * * * * *
37773605 TAAGCCAGTGTAAGACATGTCTTGGACATGCGTCGGCTACGAGATGA
1 TGAGCTAGTGTAAGACATGTCTGGGACATGCTTCGACT-TGAGA-CA
* * *
37773652 TG-GTTAGTGTAAGCCATGTCTGGGACATGGCTTCGACTTGAGATA
1 TGAGCTAGTGTAAGACATGTCTGGGACAT-GCTTCGACTTGAGACA
*
37773697 TGAGCTAATGTAA
1 TGAGCTAGTGTAA
37773710 ATTTGTGTCT
Statistics
Matches: 114, Mismatches: 32, Indels: 12
0.72 0.20 0.08
Matches are distributed among these distances:
45 5 0.04
46 73 0.64
47 23 0.20
48 13 0.11
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.26
Consensus pattern (45 bp):
TGAGCTAGTGTAAGACATGTCTGGGACATGCTTCGACTTGAGACA
Found at i:37774753 original size:42 final size:40
Alignment explanation
Indices: 37774675--37774754 Score: 108
Period size: 41 Copynumber: 1.9 Consensus size: 40
37774665 AGGTTTTTGC
*
37774675 ACACGGGCTAGGACACGGGCGTGTCATGGCCGTGTGAATG
1 ACACGGGCTAAGACACGGGCGTGTCATGGCCGTGTGAATG
*
37774715 ACACGGGCTATAGACACGGGTGTGTGCCA-GGCCGTGTGAA
1 ACACGGGCTA-AGACACGGGCGTGT--CATGGCCGTGTGAA
37774755 AACCCTTATA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
40 10 0.29
41 12 0.34
42 11 0.31
43 2 0.06
ACGTcount: A:0.21, C:0.23, G:0.39, T:0.17
Consensus pattern (40 bp):
ACACGGGCTAAGACACGGGCGTGTCATGGCCGTGTGAATG
Found at i:37785925 original size:40 final size:40
Alignment explanation
Indices: 37785841--37786024 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
37785831 TTGAATGTTG
* * * *
37785841 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
**
37785880 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
37785921 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
37785961 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
*
37786001 TCCAGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
37786025 GTATGAGTTA
Statistics
Matches: 124, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 2 0.02
40 112 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:37785978 original size:80 final size:81
Alignment explanation
Indices: 37785841--37786021 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
37785831 TTGAATGTTG
* *
37785841 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
37785905 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
37785921 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
37785982 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
*
37786001 TCCAGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
37786022 ATTGTATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:37793293 original size:14 final size:15
Alignment explanation
Indices: 37793256--37793301 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 15
37793246 ATATATATGA
*
37793256 ATTAGTAATAAATTAT
1 ATTA-TAATTAATTAT
37793272 ATTA-AATTAATT-T
1 ATTATAATTAATTAT
37793285 ATTATAATTATATTAT
1 ATTATAATTA-ATTAT
37793301 A
1 A
37793302 AGATATTTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
13 5 0.19
14 12 0.46
15 3 0.12
16 6 0.23
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (15 bp):
ATTATAATTAATTAT
Found at i:37793488 original size:21 final size:22
Alignment explanation
Indices: 37793464--37793504 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
37793454 AAATAAAAAA
*
37793464 AAAG-AAATGAAAAAGAGAAAC
1 AAAGCAAACGAAAAAGAGAAAC
*
37793485 AAAGCAAACGAAACAGAGAA
1 AAAGCAAACGAAAAAGAGAA
37793505 GAACAGGGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.68, C:0.10, G:0.20, T:0.02
Consensus pattern (22 bp):
AAAGCAAACGAAAAAGAGAAAC
Found at i:37794764 original size:17 final size:18
Alignment explanation
Indices: 37794724--37794770 Score: 60
Period size: 17 Copynumber: 2.7 Consensus size: 18
37794714 TGAATATTTT
*
37794724 ACTGTTATTGAATTACTG
1 ACTGTTATTGAATGACTG
*
37794742 ATTGTTATTG-ATGACTG
1 ACTGTTATTGAATGACTG
*
37794759 ACTGTTACTGAA
1 ACTGTTATTGAA
37794771 ATGGATAAGT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
17 14 0.58
18 10 0.42
ACGTcount: A:0.28, C:0.11, G:0.19, T:0.43
Consensus pattern (18 bp):
ACTGTTATTGAATGACTG
Found at i:37797830 original size:8 final size:8
Alignment explanation
Indices: 37797819--37797853 Score: 70
Period size: 8 Copynumber: 4.4 Consensus size: 8
37797809 CCTTCCTTCC
37797819 TTTCTTTA
1 TTTCTTTA
37797827 TTTCTTTA
1 TTTCTTTA
37797835 TTTCTTTA
1 TTTCTTTA
37797843 TTTCTTTA
1 TTTCTTTA
37797851 TTT
1 TTT
37797854 TTCTCTTAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.11, C:0.11, G:0.00, T:0.77
Consensus pattern (8 bp):
TTTCTTTA
Found at i:37799199 original size:54 final size:53
Alignment explanation
Indices: 37799141--37799259 Score: 157
Period size: 54 Copynumber: 2.2 Consensus size: 53
37799131 TGTCCTTAAC
* * *
37799141 CGTGTAACTCACTGAGATGTCACACATGCCTATGTGCCAGGTCATGTGCTAGG
1 CGTGTAACTCACTGAGATGCCACACATGCCCATGTGCCAGGCCATGTGCTAGG
* * * *
37799194 TCGTGTAACTCTCTGAGTTGCCACACATGCCCATGTGGCATGCCATGTGCTAGG
1 -CGTGTAACTCACTGAGATGCCACACATGCCCATGTGCCAGGCCATGTGCTAGG
37799248 CTGTGTAACTCA
1 C-GTGTAACTCA
37799260 TGAACTTGGA
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
53 1 0.02
54 55 0.98
ACGTcount: A:0.21, C:0.26, G:0.25, T:0.28
Consensus pattern (53 bp):
CGTGTAACTCACTGAGATGCCACACATGCCCATGTGCCAGGCCATGTGCTAGG
Found at i:37800001 original size:22 final size:22
Alignment explanation
Indices: 37799973--37800021 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
37799963 AAACCTGAAG
*
37799973 AACACTGGCACTAGGCCTAAAT
1 AACACTGGCACTAAGCCTAAAT
37799995 AACACTGGCACTAAGCCTAAAT
1 AACACTGGCACTAAGCCTAAAT
37800017 AACAC
1 AACAC
37800022 CGATACTAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.41, C:0.29, G:0.14, T:0.16
Consensus pattern (22 bp):
AACACTGGCACTAAGCCTAAAT
Found at i:37800029 original size:22 final size:22
Alignment explanation
Indices: 37799981--37800031 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
37799971 AGAACACTGG
* * *
37799981 CACTAGGCCTAAATAACACTGG
1 CACTAAGCCTAAATAACACCGA
37800003 CACTAAGCCTAAATAACACCGA
1 CACTAAGCCTAAATAACACCGA
*
37800025 TACTAAG
1 CACTAAG
37800032 TCTGCTAGGC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.41, C:0.27, G:0.14, T:0.18
Consensus pattern (22 bp):
CACTAAGCCTAAATAACACCGA
Found at i:37800052 original size:38 final size:38
Alignment explanation
Indices: 37800001--37800098 Score: 124
Period size: 38 Copynumber: 2.6 Consensus size: 38
37799991 AAATAACACT
* *
37800001 GGCACTAAGCCTAAATAACACCGATACTAAGTCTGCTA
1 GGCACTAAGCCTAAATAACACCGACACTAAGCCTGCTA
** * * *
37800039 GGCACTCGGCCTAAATATCACTGGCACTAAGCCTGCTA
1 GGCACTAAGCCTAAATAACACCGACACTAAGCCTGCTA
*
37800077 GGCACTAAGCCTGAATAACACC
1 GGCACTAAGCCTAAATAACACC
37800099 TCATTTGAAT
Statistics
Matches: 48, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
38 48 1.00
ACGTcount: A:0.33, C:0.30, G:0.18, T:0.19
Consensus pattern (38 bp):
GGCACTAAGCCTAAATAACACCGACACTAAGCCTGCTA
Found at i:37803871 original size:55 final size:55
Alignment explanation
Indices: 37803767--37803872 Score: 149
Period size: 55 Copynumber: 1.9 Consensus size: 55
37803757 CTTAAACTTT
** **
37803767 TAAGTCAGTATTGTCCATGGGTAGGCCACATGGGCATGTGCCATAGCCGTGTCTA
1 TAAGTCAGTATTGTCCACAGGTAGGCCACACAGGCATGTGCCATAGCCGTGTCTA
* * *
37803822 TAAGTCAGTATTGTCCACAGGTAGGCCACACAGGCGTGTGTCATGGCCGTG
1 TAAGTCAGTATTGTCCACAGGTAGGCCACACAGGCATGTGCCATAGCCGTG
37803873 CCTTAAAGTT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
55 44 1.00
ACGTcount: A:0.22, C:0.23, G:0.30, T:0.25
Consensus pattern (55 bp):
TAAGTCAGTATTGTCCACAGGTAGGCCACACAGGCATGTGCCATAGCCGTGTCTA
Found at i:37823046 original size:55 final size:54
Alignment explanation
Indices: 37822951--37823100 Score: 149
Period size: 55 Copynumber: 2.8 Consensus size: 54
37822941 CTACTTTGTT
* ** * *
37822951 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAATGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * * * ** *
37823005 GCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAATGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* *
37823060 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
37823101 GGCTCAATAT
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 37 0.47
55 42 0.53
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:37823063 original size:27 final size:27
Alignment explanation
Indices: 37822923--37823100 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
37822913 TAAATTGTAC
37822923 AGCACTAAGTGTGCGATTCT-ACTT-TGT
1 AGCACTAAGTGTGCGATT-TGA-TTATGT
* ** *
37822950 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
37822976 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* * *
37823004 GGCACTAAGTGTGCGGGTTTGACTATGT
1 AGCACTAAGTGTGC-GATTTGATTATGT
*
37823032 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* * * *
37823059 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
37823086 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37823101 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 97 0.80
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:37823064 original size:82 final size:81
Alignment explanation
Indices: 37822924--37823079 Score: 190
Period size: 82 Copynumber: 1.9 Consensus size: 81
37822914 AAATTGTACA
* * * *
37822924 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
37822989 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
37823005 GCACTAAGTGTGCGGGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAA
1 GCACTAAGTGTGC-GATTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAA
*
37823068 TGTGCGAGTTGA
63 TGTGCGAATTGA
37823080 TTATATAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:37825830 original size:36 final size:36
Alignment explanation
Indices: 37825790--37825866 Score: 118
Period size: 36 Copynumber: 2.1 Consensus size: 36
37825780 AACTTTACTA
*
37825790 AATATTAATATTTAATGAATTCAAATATATGACAAT
1 AATATCAATATTTAATGAATTCAAATATATGACAAT
* * *
37825826 AATATCAATATTTAATGAATTTAAATATGTGATAAT
1 AATATCAATATTTAATGAATTCAAATATATGACAAT
37825862 AATAT
1 AATAT
37825867 AATTAATTTG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.49, C:0.04, G:0.06, T:0.40
Consensus pattern (36 bp):
AATATCAATATTTAATGAATTCAAATATATGACAAT
Found at i:37826309 original size:29 final size:29
Alignment explanation
Indices: 37826243--37826301 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
37826233 GTCGAAACCC
37826243 TAGATCTTGAGATGAAAATAGAAAAGTTT
1 TAGATCTTGAGATGAAAATAGAAAAGTTT
37826272 TAGATCTTGAGATGAAAATAGAAAA-TTT
1 TAGATCTTGAGATGAAAATAGAAAAGTTT
37826300 TA
1 TA
37826302 ATCACTTGCT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 5 0.17
29 25 0.83
ACGTcount: A:0.46, C:0.03, G:0.19, T:0.32
Consensus pattern (29 bp):
TAGATCTTGAGATGAAAATAGAAAAGTTT
Found at i:37827192 original size:13 final size:13
Alignment explanation
Indices: 37827174--37827204 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
37827164 ATGTGCTGTT
37827174 AATTTTAAGTTGA
1 AATTTTAAGTTGA
*
37827187 AATTTTATGTTGA
1 AATTTTAAGTTGA
37827200 AATTT
1 AATTT
37827205 ATAGAAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.13, T:0.52
Consensus pattern (13 bp):
AATTTTAAGTTGA
Found at i:37829066 original size:22 final size:21
Alignment explanation
Indices: 37829013--37829066 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 21
37829003 TGGCCAGCAG
* *
37829013 CACAGGCGTGTCCTAGGGTCT
1 CACAGGCGTGTCCTAGGGCCA
* *
37829034 CACGGGCGTGTCCCTTGGGCCA
1 CACAGGCGTGT-CCTAGGGCCA
37829056 CACAGGCGTGT
1 CACAGGCGTGT
37829067 GTGCCCTGTA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 10 0.37
22 17 0.63
ACGTcount: A:0.13, C:0.31, G:0.35, T:0.20
Consensus pattern (21 bp):
CACAGGCGTGTCCTAGGGCCA
Found at i:37831438 original size:46 final size:48
Alignment explanation
Indices: 37831315--37831442 Score: 158
Period size: 46 Copynumber: 2.8 Consensus size: 48
37831305 CTTGTGTGAG
*
37831315 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTCAGACGAGAA
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATGCAGACGAGAA
* * * *
37831363 CTAGTGTAAGA-CATGTTTGGGACAT-GCATCGGC-TGCGAGATGTG-T
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATGC-AGACGAGAA
*
37831408 C-AGTGTAAGACCATGTCTAGGACATGGCATCGGCA
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
37831443 CCCTACCCCA
Statistics
Matches: 69, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
44 9 0.13
45 15 0.22
46 21 0.30
47 13 0.19
48 11 0.16
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (48 bp):
CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATGCAGACGAGAA
Found at i:37838914 original size:46 final size:47
Alignment explanation
Indices: 37838808--37838980 Score: 182
Period size: 46 Copynumber: 3.7 Consensus size: 47
37838798 CACTTGTGTG
* * * *
37838808 AGCTAATGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGATG-A
1 AGCTAGTGTAAGACCATGTCTGGGACATGGCATC-GCCTCGAGATGTA
*
37838855 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGTGATGTA
1 -AGCTAGTGTAAGACCATGTCTGGGACATGGCATC-GCCTCGAGATGTA
* *
37838902 AGCTAGTTTAAGA-CATGTCTGGGACAT-GCATCGGCTGCGAGATGT-
1 AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGCCT-CGAGATGTA
37838947 -G-TCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGCT-AGTGTAAGACCATGTCTGGGACATGGCATCG
37838981 GTACCCTACC
Statistics
Matches: 110, Mismatches: 10, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
43 1 0.01
44 9 0.08
45 17 0.15
46 57 0.52
47 14 0.13
48 12 0.11
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (47 bp):
AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGCCTCGAGATGTA
Found at i:37848465 original size:91 final size:91
Alignment explanation
Indices: 37848310--37848582 Score: 519
Period size: 91 Copynumber: 3.0 Consensus size: 91
37848300 CATACCTATT
**
37848310 AAATTACCCATTGAACCACTTGGAATACTAAAGGATACTCGGGAATCTCGTACACATAGTACCGT
1 AAATTACCTGTTGAACCACTTGGAATACTAAAGGATACTCGGGAATCTCGTACACATAGTACCGT
37848375 ACCAATGTCATATCCCATATATGGTC
66 ACCAATGTCATATCCCATATATGGTC
37848401 AAATTACCTGTTGAACCACTTGGAATACTAAAGGATACTCGGGAATCTCGTACACATAGTACCGT
1 AAATTACCTGTTGAACCACTTGGAATACTAAAGGATACTCGGGAATCTCGTACACATAGTACCGT
37848466 ACCAATGTCATATCCCATATATGGTC
66 ACCAATGTCATATCCCATATATGGTC
37848492 AAATTACCTGTTGAACCACTTGGAATACTAAAGGATACTCGGGAATCTCGTACACATAGTACCGT
1 AAATTACCTGTTGAACCACTTGGAATACTAAAGGATACTCGGGAATCTCGTACACATAGTACCGT
*
37848557 ACCAATGTCATATCCCAGATATGGTC
66 ACCAATGTCATATCCCATATATGGTC
37848583 TTACATGTAA
Statistics
Matches: 179, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
91 179 1.00
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.27
Consensus pattern (91 bp):
AAATTACCTGTTGAACCACTTGGAATACTAAAGGATACTCGGGAATCTCGTACACATAGTACCGT
ACCAATGTCATATCCCATATATGGTC
Found at i:37848682 original size:42 final size:42
Alignment explanation
Indices: 37848559--37848682 Score: 115
Period size: 43 Copynumber: 2.9 Consensus size: 42
37848549 AGTACCGTAC
* ** *
37848559 CAATGTCATATCCCAGATATGGTCTTACATGTAATCTCGTAT
1 CAATGTCATATCCCATATATGGTCTTACACATAATCTCATAT
* * * * * *
37848601 CGATGCCAATAGCCCGTCTATGGTCTTACACGA-AGTCTCATAT
1 CAATGTC-ATATCCCATATATGGTCTTACAC-ATAATCTCATAT
* *
37848644 CAATGTCATATCCTATATATAGTCTTACACATAATCTCA
1 CAATGTCATATCCCATATATGGTCTTACACATAATCTCA
37848683 GTAATCCTAA
Statistics
Matches: 61, Mismatches: 18, Indels: 6
0.72 0.21 0.07
Matches are distributed among these distances:
41 1 0.02
42 29 0.48
43 31 0.51
ACGTcount: A:0.30, C:0.24, G:0.13, T:0.33
Consensus pattern (42 bp):
CAATGTCATATCCCATATATGGTCTTACACATAATCTCATAT
Found at i:37851486 original size:13 final size:14
Alignment explanation
Indices: 37851460--37851503 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
37851450 TTATTTTGAG
*
37851460 TTTTTTAAGTAAAT-
1 TTTTTTAA-AAAATA
37851474 TTTTTTAAAAAATA
1 TTTTTTAAAAAATA
*
37851488 TTTTTTAAAAACTA
1 TTTTTTAAAAAATA
37851502 TT
1 TT
37851504 AAAGTAATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
13 4 0.15
14 23 0.85
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (14 bp):
TTTTTTAAAAAATA
Found at i:37852012 original size:3 final size:3
Alignment explanation
Indices: 37852004--37852028 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
37851994 TTTAACAGTG
37852004 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
37852029 TGAAAAGCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:37855488 original size:9 final size:9
Alignment explanation
Indices: 37855457--37855498 Score: 50
Period size: 9 Copynumber: 4.6 Consensus size: 9
37855447 AAAGATTGAG
37855457 AAAATAAGAA
1 AAAATAA-AA
*
37855467 AAAA-AAAGG
1 AAAATAAA-A
37855476 AAAATAAAA
1 AAAATAAAA
37855485 AAAATAAAA
1 AAAATAAAA
37855494 AAAAT
1 AAAAT
37855499 TATATATTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
8 1 0.04
9 20 0.71
10 7 0.25
ACGTcount: A:0.83, C:0.00, G:0.07, T:0.10
Consensus pattern (9 bp):
AAAATAAAA
Found at i:37865571 original size:46 final size:46
Alignment explanation
Indices: 37865508--37865822 Score: 396
Period size: 46 Copynumber: 6.8 Consensus size: 46
37865498 TTTGACATGA
* * * *
37865508 TGCCATAGTGTCTTTCAACCATGGTCTTGTTCATTTTATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGT
* * *
37865554 TGCCATGGTATCCTTCAACCATGGTCTTGTTCATTTTATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGT
* * *
37865600 TGCCATAGTATCCTTCAACCATGGTCTTATTCATTTCATGTCACGC
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGT
* * ** *
37865646 TGCCATAGTATCTTTCAACCATGGTCCTATTCATTTCCCGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGT
* ** * *
37865692 TGCCATGGTATCTTTCAATCATGGTCTTACACATTTCATATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGT
** * *
37865738 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGT
**
37865784 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCAT
37865823 TTCAGAAAGC
Statistics
Matches: 247, Mismatches: 22, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 247 1.00
ACGTcount: A:0.21, C:0.25, G:0.14, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGT
Found at i:37866239 original size:24 final size:24
Alignment explanation
Indices: 37866203--37866253 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
37866193 TTCTTTCTTT
37866203 ATATATTAATAAAATAATAATAAA
1 ATATATTAATAAAATAATAATAAA
* * *
37866227 ATATCTTATTAAAATATTAATAAA
1 ATATATTAATAAAATAATAATAAA
37866251 ATA
1 ATA
37866254 ATTTTTATCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (24 bp):
ATATATTAATAAAATAATAATAAA
Found at i:37873264 original size:21 final size:21
Alignment explanation
Indices: 37873235--37873277 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
37873225 AAAACACACT
*
37873235 AACAAAAGCTTATAAGAGCTG
1 AACAAAAGCTCATAAGAGCTG
* *
37873256 AACAGAAGCTCGTAAGAGCTG
1 AACAAAAGCTCATAAGAGCTG
37873277 A
1 A
37873278 TCTACCCAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.44, C:0.16, G:0.23, T:0.16
Consensus pattern (21 bp):
AACAAAAGCTCATAAGAGCTG
Found at i:37877080 original size:21 final size:21
Alignment explanation
Indices: 37877054--37877095 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
37877044 ATTAATATAA
37877054 TAATAC-ATAATTATATTATTT
1 TAATACTATAATTA-ATTATTT
*
37877075 TAATACTTTAATTAATTATTT
1 TAATACTATAATTAATTATTT
37877096 ATGACCCTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (21 bp):
TAATACTATAATTAATTATTT
Found at i:37879922 original size:30 final size:30
Alignment explanation
Indices: 37879888--37879949 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
37879878 CTTAACAAGT
*
37879888 AAATGCCTCTAAAATAATAACAAAATTAAC
1 AAATGCCTATAAAATAATAACAAAATTAAC
37879918 AAATGCCTATAAAATAATAACAAAATTAAC
1 AAATGCCTATAAAATAATAACAAAATTAAC
37879948 AA
1 AA
37879950 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.60, C:0.15, G:0.03, T:0.23
Consensus pattern (30 bp):
AAATGCCTATAAAATAATAACAAAATTAAC
Found at i:37880004 original size:22 final size:22
Alignment explanation
Indices: 37879979--37880021 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
37879969 TATCCAAACA
37879979 ATAACAATAAAATAGTAGCAAC
1 ATAACAATAAAATAGTAGCAAC
* * *
37880001 ATAATAGTAAAATTGTAGCAA
1 ATAACAATAAAATAGTAGCAA
37880022 AATAGGGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.56, C:0.09, G:0.12, T:0.23
Consensus pattern (22 bp):
ATAACAATAAAATAGTAGCAAC
Found at i:37880301 original size:30 final size:30
Alignment explanation
Indices: 37880267--37880329 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
37880257 ACTTATTTTA
37880267 TTGTTAATTTTGTTATTATTTTAAAGATAT
1 TTGTTAATTTTGTTATTATTTTAAAGATAT
* *
37880297 TTGTTAATTTTGTTATTATTTTATAGGTAT
1 TTGTTAATTTTGTTATTATTTTAAAGATAT
37880327 TTG
1 TTG
37880330 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.25, C:0.00, G:0.13, T:0.62
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGATAT
Found at i:37880437 original size:18 final size:20
Alignment explanation
Indices: 37880414--37880452 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 20
37880404 AATATTTATA
*
37880414 TTGATGT-TTTTA-ATATTT
1 TTGATGTATTATATATATTT
37880432 TTGATGTATTATATATATTT
1 TTGATGTATTATATATATTT
37880452 T
1 T
37880453 AAAATTATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
19 4 0.22
20 7 0.39
ACGTcount: A:0.26, C:0.00, G:0.10, T:0.64
Consensus pattern (20 bp):
TTGATGTATTATATATATTT
Found at i:37880474 original size:12 final size:12
Alignment explanation
Indices: 37880453--37880486 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
37880443 TATATATTTT
*
37880453 AAAATTATATAA
1 AAAATAATATAA
37880465 AAAATAATATAA
1 AAAATAATATAA
*
37880477 AAATTAATAT
1 AAAATAATAT
37880487 GGACAGGCCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAATAATATAA
Found at i:37880780 original size:17 final size:16
Alignment explanation
Indices: 37880760--37880810 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 16
37880750 AAAAAATTAC
37880760 AATAGAAGAAAATAAAG
1 AATAGAAGAAAA-AAAG
* *
37880777 AATAGAGGAGAAAAAG
1 AATAGAAGAAAAAAAG
*
37880793 AATTA-AAGTAAAAAAG
1 AA-TAGAAGAAAAAAAG
37880809 AA
1 AA
37880811 ATAATAGAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
16 16 0.57
17 12 0.43
ACGTcount: A:0.69, C:0.00, G:0.20, T:0.12
Consensus pattern (16 bp):
AATAGAAGAAAAAAAG
Found at i:37880817 original size:36 final size:36
Alignment explanation
Indices: 37880768--37880836 Score: 93
Period size: 36 Copynumber: 1.9 Consensus size: 36
37880758 ACAATAGAAG
* *
37880768 AAAATAAAGAATAGAGGAGAAAAAGAATTAAAGTAA
1 AAAAGAAAGAATAGAAGAGAAAAAGAATTAAAGTAA
* * *
37880804 AAAAGAAATAATAGAATAGATAAAGAATTAAAG
1 AAAAGAAAGAATAGAAGAGAAAAAGAATTAAAG
37880837 GCTTCCTGAC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 28 1.00
ACGTcount: A:0.67, C:0.00, G:0.17, T:0.16
Consensus pattern (36 bp):
AAAAGAAAGAATAGAAGAGAAAAAGAATTAAAGTAA
Found at i:37883490 original size:24 final size:24
Alignment explanation
Indices: 37883455--37883501 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
37883445 TGGATGTTCC
37883455 TATTCCTCAGATTGTAAAAGTTTT
1 TATTCCTCAGATTGTAAAAGTTTT
*
37883479 TATT-CTCGAGATTGTGAAAGTTT
1 TATTCCTC-AGATTGTAAAAGTTT
37883502 CTGTTCTTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 3 0.14
24 18 0.86
ACGTcount: A:0.28, C:0.11, G:0.17, T:0.45
Consensus pattern (24 bp):
TATTCCTCAGATTGTAAAAGTTTT
Found at i:37883508 original size:24 final size:24
Alignment explanation
Indices: 37883463--37883535 Score: 65
Period size: 24 Copynumber: 3.0 Consensus size: 24
37883453 CCTATTCCTC
* * *
37883463 AGATTGTAAAAGTTTTTATTCTCG
1 AGATTGTGAAAGTTTCTGTTCTCG
*
37883487 AGATTGTGAAAGTTTCTGTTCTTG
1 AGATTGTGAAAGTTTCTGTTCTCG
** ** *
37883511 AGGGTACGAAAGTTTCCGTTCTCG
1 AGATTGTGAAAGTTTCTGTTCTCG
37883535 A
1 A
37883536 AATAGTGGTT
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.25, C:0.12, G:0.23, T:0.40
Consensus pattern (24 bp):
AGATTGTGAAAGTTTCTGTTCTCG
Found at i:37883984 original size:16 final size:16
Alignment explanation
Indices: 37883963--37884017 Score: 83
Period size: 16 Copynumber: 3.4 Consensus size: 16
37883953 GTTTGGTTCA
*
37883963 CTGTAATGGAATAGGG
1 CTGTAATGGAATAGAG
*
37883979 CTGTAATTGAATAGAG
1 CTGTAATGGAATAGAG
*
37883995 CTGTAATGGAATAAAG
1 CTGTAATGGAATAGAG
37884011 CTGTAAT
1 CTGTAAT
37884018 AAGTAGTTCA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.29
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:37884277 original size:58 final size:58
Alignment explanation
Indices: 37884198--37884321 Score: 178
Period size: 58 Copynumber: 2.1 Consensus size: 58
37884188 TTTTAATAAG
* * *
37884198 ATTATTATTAAAAATAATTTAATAAAAATAATAAATAATTTAATCATATT-TTAACATT
1 ATTATTATTAAAAATAATTTAAT-AAAATAATAAACAATTTAATAATATTCTTAACATA
* * *
37884256 ATTATTATTAAATATAATTTAATAAAATAATATACAATTTAATAATATTCTTAATATA
1 ATTATTATTAAAAATAATTTAATAAAATAATAAACAATTTAATAATATTCTTAACATA
37884314 ATTATTAT
1 ATTATTAT
37884322 ATGAATTAAA
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
57 23 0.39
58 36 0.61
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (58 bp):
ATTATTATTAAAAATAATTTAATAAAATAATAAACAATTTAATAATATTCTTAACATA
Found at i:37886281 original size:35 final size:35
Alignment explanation
Indices: 37886235--37886307 Score: 137
Period size: 35 Copynumber: 2.1 Consensus size: 35
37886225 TACAAAGATA
*
37886235 GTTAGCATTAACAAACATATAATATAAGGTAAAAT
1 GTTAGCATTAACAAACAGATAATATAAGGTAAAAT
37886270 GTTAGCATTAACAAACAGATAATATAAGGTAAAAT
1 GTTAGCATTAACAAACAGATAATATAAGGTAAAAT
37886305 GTT
1 GTT
37886308 TAACACTCAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.49, C:0.08, G:0.14, T:0.29
Consensus pattern (35 bp):
GTTAGCATTAACAAACAGATAATATAAGGTAAAAT
Found at i:37890458 original size:21 final size:21
Alignment explanation
Indices: 37890434--37890477 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
37890424 TTTCCGATGC
37890434 CATAG-CCTAACAATGGTCTTA
1 CATAGTCC-AACAATGGTCTTA
*
37890455 CATAGTCCAACTATGGTCTTA
1 CATAGTCCAACAATGGTCTTA
37890476 CA
1 CA
37890478 CATACGTTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 19 0.90
22 2 0.10
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.30
Consensus pattern (21 bp):
CATAGTCCAACAATGGTCTTA
Found at i:37890942 original size:43 final size:43
Alignment explanation
Indices: 37890895--37890976 Score: 137
Period size: 43 Copynumber: 1.9 Consensus size: 43
37890885 ATCGATTAAC
* *
37890895 AATGCCAATGTCTCAGACATGGTCTTACACGTAATCACAATAG
1 AATGCCAATGCCCCAGACATGGTCTTACACGTAATCACAATAG
*
37890938 AATGCCAATGCCCCAGACATGGTCTTACATGTAATCACA
1 AATGCCAATGCCCCAGACATGGTCTTACACGTAATCACA
37890977 TCTCGATATC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (43 bp):
AATGCCAATGCCCCAGACATGGTCTTACACGTAATCACAATAG
Found at i:37890956 original size:86 final size:85
Alignment explanation
Indices: 37890808--37890966 Score: 187
Period size: 86 Copynumber: 1.9 Consensus size: 85
37890798 TATAGCTCAT
* * * * * * *
37890808 ACAATGCCATATCCCAGATATGGTCTTACATGTTATCACATATCAATGTCACTGTCCTAGACA-G
1 ACAATGCCATATCCCAGACATGGTCTTACACGTAATCACATATCAATGCCAATGCCCCAGACATG
37890872 AGTCTTACACGAAATCGATTA
66 -GTCTTACACGAAATCGATTA
* * *
37890893 ACAATGCCAATGTCTCAGACATGGTCTTACACGTAATCACA-ATAGAATGCCAATGCCCCAGACA
1 ACAATGCC-ATATCCCAGACATGGTCTTACACGTAATCACATAT-CAATGCCAATGCCCCAGACA
37890957 TGGTCTTACA
64 TGGTCTTACA
37890967 TGTAATCACA
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
85 10 0.16
86 50 0.82
87 1 0.02
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.26
Consensus pattern (85 bp):
ACAATGCCATATCCCAGACATGGTCTTACACGTAATCACATATCAATGCCAATGCCCCAGACATG
GTCTTACACGAAATCGATTA
Found at i:37898064 original size:93 final size:93
Alignment explanation
Indices: 37897954--37898123 Score: 286
Period size: 93 Copynumber: 1.8 Consensus size: 93
37897944 CCCCTAAGTG
* *
37897954 AACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAAC
1 AACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAAC
37898019 GAGTTCGGATGCCTGGTTACATCTCACA
66 GAGTTCGGATGCCTGGTTACATCTCACA
* * * *
37898047 AACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAAT
1 AACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAAC
37898112 GAGTTCGGATGC
66 GAGTTCGGATGC
37898124 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (93 bp):
AACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTGGTTACATCTCACA
Found at i:37898120 original size:46 final size:46
Alignment explanation
Indices: 37897948--37898120 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
37897938 AACCCGCCCC
* * * *
37897948 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * * *
37897994 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTGGTTACATCTCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGA--CAT--TTGCATC-CA
*
37898045 -CA---AACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* *
37898087 TAAGTGAACTCGGACTCAACTCAATGAGTTCGGA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
37898121 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 7 0.07
45 2 0.02
46 56 0.54
47 27 0.26
48 2 0.02
50 6 0.06
51 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:37900225 original size:4 final size:4
Alignment explanation
Indices: 37900216--37900243 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
37900206 AACTGGTACC
37900216 TAAT TAAT TAAT TAAT TAAT TAAT TAAT
1 TAAT TAAT TAAT TAAT TAAT TAAT TAAT
37900244 GTCCTAATGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (4 bp):
TAAT
Found at i:37901006 original size:12 final size:12
Alignment explanation
Indices: 37900989--37901036 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 12
37900979 CAAAAATTTG
37900989 AAATAAATCATA
1 AAATAAATCATA
37901001 AAATAAAT-A-A
1 AAATAAATCATA
*
37901011 AAATAAA-AAT-
1 AAATAAATCATA
*
37901021 AAATAATTCATA
1 AAATAAATCATA
37901033 AAAT
1 AAAT
37901037 GTAAAGTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
10 15 0.50
11 3 0.10
12 12 0.40
ACGTcount: A:0.71, C:0.04, G:0.00, T:0.25
Consensus pattern (12 bp):
AAATAAATCATA
Found at i:37901010 original size:16 final size:16
Alignment explanation
Indices: 37900989--37901036 Score: 62
Period size: 16 Copynumber: 3.0 Consensus size: 16
37900979 CAAAAATTTG
37900989 AAATAAATCATAAAAT
1 AAATAAATCATAAAAT
*
37901005 AAATAAA-AATAAAAAT
1 AAATAAATCAT-AAAAT
*
37901021 AAATAATTCATAAAAT
1 AAATAAATCATAAAAT
37901037 GTAAAGTTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
15 2 0.07
16 23 0.85
17 2 0.07
ACGTcount: A:0.71, C:0.04, G:0.00, T:0.25
Consensus pattern (16 bp):
AAATAAATCATAAAAT
Found at i:37901096 original size:20 final size:20
Alignment explanation
Indices: 37901081--37901120 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
37901071 GTATTATAAG
37901081 AAAAAAATTAAAATTAGTAC
1 AAAAAAATTAAAATTAGTAC
37901101 AAAAAAATTAAAATTAGTAC
1 AAAAAAATTAAAATTAGTAC
37901121 TATACAAAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.65, C:0.05, G:0.05, T:0.25
Consensus pattern (20 bp):
AAAAAAATTAAAATTAGTAC
Found at i:37901329 original size:20 final size:20
Alignment explanation
Indices: 37901292--37901329 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
37901282 ATACAAAAGA
*
37901292 ATATATATGAATTACAATCT
1 ATATATATGAAATACAATCT
37901312 ATATAATATGAAAT-CAAT
1 ATAT-ATATGAAATACAAT
37901330 GATCATACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.50, C:0.08, G:0.05, T:0.37
Consensus pattern (20 bp):
ATATATATGAAATACAATCT
Found at i:37903576 original size:35 final size:36
Alignment explanation
Indices: 37903510--37903581 Score: 83
Period size: 35 Copynumber: 2.0 Consensus size: 36
37903500 TTCATAACAG
* **
37903510 TTCAATGACAAATAAACATATATAATTCAA-TTAAA
1 TTCAATAACAAATAAACATATATAACACAATTTAAA
* * *
37903545 TTCAATAATAAATAAGCATTTATAACACAATTTAAA
1 TTCAATAACAAATAAACATATATAACACAATTTAAA
37903581 T
1 T
37903582 ACGTTTATTA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
35 24 0.80
36 6 0.20
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.33
Consensus pattern (36 bp):
TTCAATAACAAATAAACATATATAACACAATTTAAA
Found at i:37905202 original size:12 final size:12
Alignment explanation
Indices: 37905185--37905214 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
37905175 AATCACATGG
37905185 TCGTGTCCTACC
1 TCGTGTCCTACC
37905197 TCGTGTCCTACC
1 TCGTGTCCTACC
37905209 TCGTGT
1 TCGTGT
37905215 AACTCTCTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.07, C:0.37, G:0.20, T:0.37
Consensus pattern (12 bp):
TCGTGTCCTACC
Found at i:37911377 original size:6 final size:6
Alignment explanation
Indices: 37911366--37911457 Score: 184
Period size: 6 Copynumber: 15.3 Consensus size: 6
37911356 GAGAATAACC
37911366 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
37911414 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT AC
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT AC
37911458 CAACATATGC
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 86 1.00
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (6 bp):
ACATAT
Found at i:37919324 original size:28 final size:29
Alignment explanation
Indices: 37919299--37919364 Score: 100
Period size: 29 Copynumber: 2.3 Consensus size: 29
37919289 GGTTTTTCAT
37919299 ATTTTACAAATT-TGCCACTGATTTTCTAG
1 ATTTTAC-AATTCTGCCACTGATTTTCTAG
37919328 ATTTTACAATTCTGCCACT-ATTTTCTAG
1 ATTTTACAATTCTGCCACTGATTTTCTAG
37919356 AATTTTACA
1 -ATTTTACA
37919365 GTTTTACCTC
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
28 13 0.37
29 22 0.63
ACGTcount: A:0.29, C:0.18, G:0.08, T:0.45
Consensus pattern (29 bp):
ATTTTACAATTCTGCCACTGATTTTCTAG
Found at i:37924927 original size:94 final size:95
Alignment explanation
Indices: 37924810--37925126 Score: 323
Period size: 94 Copynumber: 3.3 Consensus size: 95
37924800 TTTGTGTGCC
* * * *
37924810 AGTGTAAGA-CATGTCTAGGACAT-GCATCAGCTACATTATGAGAGCCAATGTAAGACCA-GTTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACATTATGAGAGTCAGTGTAAGACCATG-TT
37924872 TGGGACATGGCATCGACATTGAGACGAGAGCT
65 TGGGACATGGCATCGACATTGAGA-GAGAGCT
* *
37924904 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACA--A-GATGTGTCAGTGTATGACCATGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACATTATGA-GAGTCAGTGTAAGACCATGTT
** *
37924964 TGGGACATGGCATCGACACAGATATGTGAGAGCT
65 TGGGACATGGCATCGACATTG--A-GAGAGAGCT
* * * *
37924998 AGTGTAAGACCATGTCTGGGACATGGCGTCGGCCT-CGATTTTGATAGTTAGTGTAAGACCATGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CTAC-ATTATGAGAGTCAGTGTAAGACCATGT
* *
37925062 TTGGGAAATGGCATCGAC-TTGATG-GATGAGCC
64 TTGGGACATGGCATCGACATTGA-GAGA-GAGCT
*
37925094 AGCGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
37925127 ATTATACCCT
Statistics
Matches: 189, Mismatches: 21, Indels: 25
0.80 0.09 0.11
Matches are distributed among these distances:
91 2 0.01
92 35 0.19
93 1 0.01
94 50 0.26
95 18 0.10
96 44 0.23
97 3 0.02
98 1 0.01
99 33 0.17
100 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (95 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACATTATGAGAGTCAGTGTAAGACCATGTTT
GGGACATGGCATCGACATTGAGAGAGAGCT
Found at i:37925062 original size:99 final size:95
Alignment explanation
Indices: 37924858--37925126 Score: 302
Period size: 96 Copynumber: 2.8 Consensus size: 95
37924848 TGAGAGCCAA
*
37924858 TGTAAGACCA-GTTTTGGGACATGGCATCGACATTGAGA-CGAGAGCTAGTGTAAGA-CATGTCT
1 TGTAAGACCATG-TTTGGGACATGGCATCGACATTGA-ATGGAGAGCTAGTGTAAGACCATGTCT
37924920 GGGACAT-GCATCGG-CTACAAGATGTGTCAG
64 GGGACATGGCATCGGCCTACAAGATGTGTCAG
* **
37924950 TGTATGACCATGTTTGGGACATGGCATCGACACAGATATGTGAGAGCTAGTGTAAGACCATGTCT
1 TGTAAGACCATGTTTGGGACATGGCATCGACATTGA-ATG-GAGAGCTAGTGTAAGACCATGTCT
* *** *
37925015 GGGACATGGCGTCGGCCT-CGATTTTGATAGTTAG
64 GGGACATGGCATCGGCCTAC-AAGATG-T-GTCAG
* * *
37925049 TGTAAGACCATGTTTGGGAAATGGCATCGAC-TTG-ATGGATGAGCCAGCGTAAGACCATGTCTG
1 TGTAAGACCATGTTTGGGACATGGCATCGACATTGAATGGA-GAGCTAGTGTAAGACCATGTCTG
37925112 GGACATGGCATCGGC
65 GGACATGGCATCGGC
37925127 ATTATACCCT
Statistics
Matches: 150, Mismatches: 17, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
92 32 0.21
93 1 0.01
94 16 0.11
95 16 0.11
96 45 0.30
97 5 0.03
98 2 0.01
99 33 0.22
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (95 bp):
TGTAAGACCATGTTTGGGACATGGCATCGACATTGAATGGAGAGCTAGTGTAAGACCATGTCTGG
GACATGGCATCGGCCTACAAGATGTGTCAG
Found at i:37925067 original size:49 final size:50
Alignment explanation
Indices: 37924848--37925124 Score: 190
Period size: 47 Copynumber: 5.8 Consensus size: 50
37924838 AGCTACATTA
* * ** *
37924848 TGAGAGCCAATGTAAGACCA-GTTTTGGGACATGGCATCGACATTGAGA--
1 TGAGAGCTAGTGTAAGACCATG-TTTGGGACATGGCATCGACACAGATATG
* * * *
37924896 CGAGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACA-AGATG
1 TGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGAC-ACAGATATG
* *
37924944 T--G-TC-AGTGTATGACCATGTTTGGGACATGGCATCGACACAGATATG
1 TGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGACACAGATATG
* * * * *
37924990 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGC-CTCGAT-TT
1 TGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGACAC-AGATATG
* * * **
37925039 TGATAGTTAGTGTAAGACCATGTTTGGGAAATGGCATCGAC-TTG--ATG
1 TGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGACACAGATATG
* * *
37925086 -GATGAGCCAGCGTAAGACCATGTCTGGGACATGGCATCG
1 TGA-GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCG
37925125 GCATTATACC
Statistics
Matches: 180, Mismatches: 35, Indels: 29
0.74 0.14 0.12
Matches are distributed among these distances:
44 8 0.04
45 17 0.09
46 25 0.14
47 43 0.24
48 17 0.09
49 38 0.21
50 32 0.18
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.25
Consensus pattern (50 bp):
TGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGACACAGATATG
Found at i:37929121 original size:43 final size:43
Alignment explanation
Indices: 37929040--37929197 Score: 110
Period size: 43 Copynumber: 3.7 Consensus size: 43
37929030 AAGCTCCTAC
* * * * * *
37929040 AATGCCAACGTCTCAGACGTGGTCTTACATGT-AGTCAAATAT
1 AATGCCAACATCCCAGACATGGTCCTACACGTAAATCAAATAT
* *
37929082 CAATGCC-ACTGTCCCAGACA-GGATCTTACACG-AAATCAAATAT
1 -AATGCCAAC-ATCCCAGACATGG-TCCTACACGTAAATCAAATAT
* **
37929125 GATGCCAACATCCCAGACATGGTCCTACACGTAAATCATAAGTCG
1 AATGCCAACATCCCAGACATGGTCCTACACGTAAATCA-AA-TAT
* * *
37929170 AA-GCCAACATCCCAAACGTGGTCTTACA
1 AATGCCAACATCCCAGACATGGTCCTACA
37929198 TGAGAACACA
Statistics
Matches: 94, Mismatches: 13, Indels: 15
0.77 0.11 0.12
Matches are distributed among these distances:
42 26 0.28
43 41 0.44
44 25 0.27
45 2 0.02
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.22
Consensus pattern (43 bp):
AATGCCAACATCCCAGACATGGTCCTACACGTAAATCAAATAT
Found at i:37933360 original size:68 final size:68
Alignment explanation
Indices: 37933249--37933404 Score: 267
Period size: 68 Copynumber: 2.3 Consensus size: 68
37933239 CAAGCATCCT
* * *
37933249 GATCGGTAGTGATCCTGCATGTGTTGCACACTACCGCAGCTCTTTGTGAGCCTCCTGTTACATGA
1 GATCGGTTGTGATCCTGCATGTGTTGCACACTACCGCAACTCTTTGTGAGCCTCCTGTTACACGA
37933314 TTC
66 TTC
37933317 GATCGGTTGTGATCCTGCATGTGTTGCACACTACCGCAACTCTTTGTGAGCCTCCTGTTACACGA
1 GATCGGTTGTGATCCTGCATGTGTTGCACACTACCGCAACTCTTTGTGAGCCTCCTGTTACACGA
37933382 TTC
66 TTC
* *
37933385 GATTGGTTGTGATCCAGCAT
1 GATCGGTTGTGATCCTGCAT
37933405 TTACTACGAA
Statistics
Matches: 83, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
68 83 1.00
ACGTcount: A:0.18, C:0.26, G:0.24, T:0.33
Consensus pattern (68 bp):
GATCGGTTGTGATCCTGCATGTGTTGCACACTACCGCAACTCTTTGTGAGCCTCCTGTTACACGA
TTC
Found at i:37954898 original size:46 final size:46
Alignment explanation
Indices: 37954731--37955018 Score: 240
Period size: 46 Copynumber: 6.1 Consensus size: 46
37954721 GAAATCTTAC
* * * * *
37954731 ACATATCGATGCCGATGCCATATCCCGAATATGGTCTTACACTGGCTC
1 ACATATCGATGCCGATG-CATGTCCCAAACAT-GTCTTACACTAGCTT
* * * *
37954779 ACATATATCCATGCCAATGCATGTACCAGACATGTCTTACACTAGCTCT
1 AC--ATATCGATGCCGATGCATGTCCCAAACATGTCTTACACTAGCT-T
* *
37954828 CATATATCCG-TGCCGATGCATGTCCCAAACATGTCTTACACTGGCTT
1 -ACATAT-CGATGCCGATGCATGTCCCAAACATGTCTTACACTAGCTT
* *
37954875 ACATCTCGAGGCCGATGCATGTCCCAAACATGTCTTACACTAGCTCT
1 ACATATCGATGCCGATGCATGTCCCAAACATGTCTTACACTAGCT-T
* * ** * * * *
37954922 -CGTCTTAATGCCAATCCATGTCCCAGACATGTCTGACACTAGCATT
1 ACATATCGATGCCGATGCATGTCCCAAACATGTCTTACACTAGC-TT
* * * *
37954968 TCATAACG-TGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTT
1 ACATATCGAT-GCCGATGCATGTCCCAAACATGTCTTACACTAGCTT
37955014 ACATA
1 ACATA
37955019 ACAGTAGTGT
Statistics
Matches: 193, Mismatches: 37, Indels: 22
0.77 0.15 0.09
Matches are distributed among these distances:
45 2 0.01
46 81 0.42
47 35 0.18
48 51 0.26
49 10 0.05
50 14 0.07
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.28
Consensus pattern (46 bp):
ACATATCGATGCCGATGCATGTCCCAAACATGTCTTACACTAGCTT
Found at i:37954999 original size:93 final size:94
Alignment explanation
Indices: 37954795--37955008 Score: 270
Period size: 93 Copynumber: 2.3 Consensus size: 94
37954785 ATCCATGCCA
* ** * *
37954795 ATGCATGTACCAGACATGTCTTACACTAGCTCTCATATATCCGTGCCGATGCATGTCCCAAACAT
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATATCAATGCCAATCCATGTCCCAAACAT
* * **
37954860 GTCTTACACTGGCTTACATCTCGAGGCCG
66 GTCTGACACTAGCTTACATAACGAGGCCG
* * * *
37954889 ATGCATGTCCCAAACATGTCTTACACTAGCTCTCGTCT-T-AATGCCAATCCATGTCCCAGACAT
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATATCAATGCCAATCCATGTCCCAAACAT
* *
37954952 GTCTGACACTAGCATTTCATAACGTGGCCG
66 GTCTGACACTAGC-TTACATAACGAGGCCG
37954982 ATGCATGTCCCAGACATGTCTTACACT
1 ATGCATGTCCCAGACATGTCTTACACT
37955009 GGCTTACATA
Statistics
Matches: 103, Mismatches: 16, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
92 30 0.29
93 39 0.38
94 34 0.33
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (94 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATATCAATGCCAATCCATGTCCCAAACAT
GTCTGACACTAGCTTACATAACGAGGCCG
Found at i:37960591 original size:48 final size:48
Alignment explanation
Indices: 37960491--37960691 Score: 177
Period size: 48 Copynumber: 4.3 Consensus size: 48
37960481 TAGATATGGT
* * ** *
37960491 CTTACATTGGCTCTCATATATTCGTGCCGATGCATGTCCCAGGCATGT
1 CTTACACTAGCTCTCATATATTCGTGCCGATGCATGTCCCAAACATGC
*
37960539 CTTACACTAGCTCTCATATATTTGTGCCGATGCATGTCCCAAACATGC
1 CTTACACTAGCTCTCATATATTCGTGCCGATGCATGTCCCAAACATGC
* *
37960587 CTTACACTAG----CACAT-CTCGTAGCCGATGCATGTCCCAAACAT-C
1 CTTACACTAGCTCTCATATATTCGT-GCCGATGCATGTCCCAAACATGC
* * * * * *
37960630 TCTTACACTGGCT-T-ACAT-CTCGAGGCCGATGCATGTCCCAGACATGT
1 -CTTACACTAGCTCTCATATATTCG-TGCCGATGCATGTCCCAAACATGC
*
37960677 CTTACACTAACTCTC
1 CTTACACTAGCTCTC
37960692 GTCTCAATGC
Statistics
Matches: 129, Mismatches: 15, Indels: 18
0.80 0.09 0.11
Matches are distributed among these distances:
43 4 0.03
44 34 0.26
46 38 0.29
47 1 0.01
48 52 0.40
ACGTcount: A:0.23, C:0.31, G:0.16, T:0.29
Consensus pattern (48 bp):
CTTACACTAGCTCTCATATATTCGTGCCGATGCATGTCCCAAACATGC
Found at i:37960621 original size:92 final size:87
Alignment explanation
Indices: 37960512--37960772 Score: 251
Period size: 92 Copynumber: 2.9 Consensus size: 87
37960502 TCTCATATAT
* *
37960512 TCGT-GCCGATGCATGTCCCAGGCATGTCTTACACTAGCTCTCATATATTTGTGCCGATGCATGT
1 TCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCT-TCATATATTTG-GCCGATGCATGT
*
37960576 CCCAAACATGCCTTACACTAGCACATC
64 CCCAAACATGTCTTACACTA--AC-TC
* * * ***
37960603 TCGTAGCCGATGCATGTCCCAAACATCTCTTACACTGGCTTACATCT-CGAGGCCGATGCATGTC
1 TCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTT-CATATATTTGGCCGATGCATGTC
*
37960667 CCAGACATGTCTTACACTAACTC
65 CCAAACATGTCTTACACTAACTC
* * *
37960690 TCGTCTCAATGCCGATGCATGTCCTAGACATGTCTTGCACTGGCATTTCATA-ATGTGGCCGATG
1 TCG--T--A-GCCGATGCATGTCCCAGACATGTCTTACACTGGC--TTCATATATTTGGCCGATG
*
37960754 CATG-CCCACACATGTCTTA
59 CATGTCCCAAACATGTCTTA
37960773 AATTGGCTCA
Statistics
Matches: 142, Mismatches: 18, Indels: 19
0.79 0.10 0.11
Matches are distributed among these distances:
87 5 0.04
88 2 0.01
89 1 0.01
90 30 0.21
91 7 0.05
92 79 0.56
93 16 0.11
94 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.28
Consensus pattern (87 bp):
TCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTCATATATTTGGCCGATGCATGTCC
CAAACATGTCTTACACTAACTC
Found at i:37960665 original size:46 final size:46
Alignment explanation
Indices: 37960516--37960772 Score: 204
Period size: 46 Copynumber: 5.6 Consensus size: 46
37960506 ATATATTCGT
** * * * *
37960516 GCCGATGCATGTCCCAGGCATGTCTTACACTAGCTCTCATATATTTG-T
1 GCCGATGCATGTCCCAAACATGTCTTACACTAGCT-T-ACAT-CTCGAG
*
37960564 GCCGATGCATGTCCCAAACATGCCTTACACTAGC--ACATCTCGTA-
1 GCCGATGCATGTCCCAAACATGTCTTACACTAGCTTACATCTCG-AG
* *
37960608 GCCGATGCATGTCCCAAACATCTCTTACACTGGCTTACATCTCGAG
1 GCCGATGCATGTCCCAAACATGTCTTACACTAGCTTACATCTCGAG
* * * * *
37960654 GCCGATGCATGTCCCAGACATGTCTTACACTAACTCT-CGTCTCAAT
1 GCCGATGCATGTCCCAAACATGTCTTACACTAGCT-TACATCTCGAG
* * * * * * *
37960700 GCCGATGCATGTCCTAGACATGTCTTGCACTGGCATTTCATAAT-GTG
1 GCCGATGCATGTCCCAAACATGTCTTACACTAGC-TTACAT-CTCGAG
*
37960747 GCCGATGCATG-CCCACACATGTCTTA
1 GCCGATGCATGTCCCAAACATGTCTTA
37960773 AATTGGCTCA
Statistics
Matches: 172, Mismatches: 28, Indels: 20
0.78 0.13 0.09
Matches are distributed among these distances:
43 2 0.01
44 34 0.20
45 1 0.01
46 88 0.51
47 15 0.09
48 32 0.19
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAAACATGTCTTACACTAGCTTACATCTCGAG
Found at i:37960780 original size:138 final size:136
Alignment explanation
Indices: 37960516--37960785 Score: 303
Period size: 138 Copynumber: 2.0 Consensus size: 136
37960506 ATATATTCGT
* * *
37960516 GCCGATGCATGTCCCAGGCATGTCTTACACTAGCTCTCATATATTTGTGCCGATGCATGTCCCAA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAACTCTCATATA--TATGCCGATGCATGTCCCAA
* * *
37960581 ACATGCCTTACACTAGCACATCTCGTAGCCGATGCATGTCCCAAACATCTCTTACACTGGCTTAC
64 ACATGCCTTACACTAGCACATATCGTAGCCGATGCATGTCCCAAACATCTCTTAAACTGGCTCAC
37960646 ATCTCGAG
129 ATCTCGAG
* * * *
37960654 GCCGATGCATGTCCCAGACATGTCTTACACTAACTCTCGTCTCA-ATGCCGATGCATGTCCTAGA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAACTCTCATAT-ATATGCCGATGCATGTCCCAAA
* * * * * * *
37960718 CATGTCTTGCACTGGCATTTCATAAT-GTGGCCGATGCATG-CCCACACATGTCTTAAATTGGCT
65 CATGCCTTACACTAGCA---CAT-ATCGTAGCCGATGCATGTCCCAAACATCTCTTAAACTGGCT
37960781 CACAT
126 CACAT
37960786 AACAGCAGTG
Statistics
Matches: 110, Mismatches: 17, Indels: 10
0.80 0.12 0.07
Matches are distributed among these distances:
136 31 0.28
138 61 0.55
139 17 0.15
140 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (136 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAACTCTCATATATATGCCGATGCATGTCCCAAAC
ATGCCTTACACTAGCACATATCGTAGCCGATGCATGTCCCAAACATCTCTTAAACTGGCTCACAT
CTCGAG
Found at i:37974274 original size:30 final size:30
Alignment explanation
Indices: 37974239--37974296 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
37974229 GAATTATTTT
* *
37974239 TAAAATTTAGTTG-CTCTTTTCGTAAATAA
1 TAAAAATTAGGTGCCTCTTTTCGTAAATAA
*
37974268 TAAAAATTAGGTGCCTCTTTTTGTAAATA
1 TAAAAATTAGGTGCCTCTTTTCGTAAATA
37974297 TTTTTAGAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 11 0.44
30 14 0.56
ACGTcount: A:0.34, C:0.10, G:0.12, T:0.43
Consensus pattern (30 bp):
TAAAAATTAGGTGCCTCTTTTCGTAAATAA
Found at i:37975135 original size:25 final size:27
Alignment explanation
Indices: 37975080--37975135 Score: 66
Period size: 25 Copynumber: 2.2 Consensus size: 27
37975070 TTTCTCTTAA
*
37975080 ATTTTAATTTTATTCTAATATCTAATT
1 ATTTTAATTTTATTCGAATATCTAATT
37975107 -TTTTAA-TTTATT-GAATCAT-TAATT
1 ATTTTAATTTTATTCGAAT-ATCTAATT
37975131 ATTTT
1 ATTTT
37975136 TATTAATTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
24 8 0.31
25 12 0.46
26 6 0.23
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61
Consensus pattern (27 bp):
ATTTTAATTTTATTCGAATATCTAATT
Found at i:37980205 original size:15 final size:15
Alignment explanation
Indices: 37980182--37980216 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
37980172 GCTCAGTAAA
*
37980182 GAGAAAAGACAAGCT
1 GAGATAAGACAAGCT
37980197 GAGATAAGACAAGCT
1 GAGATAAGACAAGCT
37980212 GAGAT
1 GAGAT
37980217 GGATACTCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.49, C:0.11, G:0.29, T:0.11
Consensus pattern (15 bp):
GAGATAAGACAAGCT
Found at i:37983651 original size:47 final size:45
Alignment explanation
Indices: 37983613--37983716 Score: 127
Period size: 47 Copynumber: 2.2 Consensus size: 45
37983603 AATCCGTATA
*
37983613 TGATTTCTGATGATCTAACGCTGTTTTCAGACTTTCAAAGATCACTT
1 TGATTTCTGATGATCTAACGCTGTTTTCAAACTTTC-AA-ATCACTT
* *
37983660 TTATTTCTGATGATCTAACGTTGTTTTCAAACTTTCAAAGATCACTT
1 TGATTTCTGATGATCTAACGCTGTTTTCAAACTTTC-AA-ATCACTT
*
37983707 TTACTTTCTG
1 TGA-TTTCTG
37983717 TTCAGTCTCT
Statistics
Matches: 53, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
47 47 0.89
48 6 0.11
ACGTcount: A:0.25, C:0.18, G:0.12, T:0.44
Consensus pattern (45 bp):
TGATTTCTGATGATCTAACGCTGTTTTCAAACTTTCAAATCACTT
Found at i:37989426 original size:29 final size:29
Alignment explanation
Indices: 37989393--37989492 Score: 123
Period size: 29 Copynumber: 3.5 Consensus size: 29
37989383 ACATTAAGCC
*
37989393 AATCATATTCATATGGCCCATTAGGCCCA
1 AATCACATTCATATGGCCCATTAGGCCCA
*
37989422 AATCACCTAT-ATATGGCCCATTAGGCCCA
1 AATCACAT-TCATATGGCCCATTAGGCCCA
* * *
37989451 AATCACATTTATATGGCCCGTTAGACCC-
1 AATCACATTCATATGGCCCATTAGGCCCA
*
37989479 AGTCACATTCATAT
1 AATCACATTCATAT
37989493 TCATGCTCAC
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
28 13 0.21
29 48 0.77
30 1 0.02
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.28
Consensus pattern (29 bp):
AATCACATTCATATGGCCCATTAGGCCCA
Found at i:37989736 original size:8 final size:8
Alignment explanation
Indices: 37989703--37989745 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
37989693 GTAGCCAAAC
*
37989703 TTTCAACT
1 TTTCGACT
*
37989711 TTTCGACA
1 TTTCGACT
37989719 TTTCGACT
1 TTTCGACT
*
37989727 TTTCGGCT
1 TTTCGACT
*
37989735 TTTCGGCT
1 TTTCGACT
37989743 TTT
1 TTT
37989746 GCCGATACAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 31 1.00
ACGTcount: A:0.12, C:0.23, G:0.14, T:0.51
Consensus pattern (8 bp):
TTTCGACT
Found at i:38000310 original size:40 final size:40
Alignment explanation
Indices: 38000249--38000550 Score: 432
Period size: 40 Copynumber: 7.6 Consensus size: 40
38000239 AACCCAAGTA
* *
38000249 CCTTCGGGAATTAG-CCGGATATAG-CAACTCGCAGAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCAGAAATG
* * *
38000288 CCTTCGGGTCTTGGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAGAAATG
* *
38000328 CCTTCGGGACTTAGCTCGGATATAGTCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAGAAATG
*
38000368 CCTTCGGGACTTAGCCCGGATATAGTCACTAGC-GCAAAGG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAG-AAATG
** *
38000408 CCTTCGGGACTTAGCTGGGATATAGTCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAGAAATG
*
38000448 CCTTCGGGACTTAGCCCGGATATAGTCACTAGC-GCAAAGG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAG-AAATG
*
38000488 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAGAAATG
38000528 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
38000551 CATCCGAATA
Statistics
Matches: 235, Mismatches: 22, Indels: 11
0.88 0.08 0.04
Matches are distributed among these distances:
39 11 0.05
40 223 0.95
41 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAGAAATG
Found at i:38000385 original size:80 final size:80
Alignment explanation
Indices: 38000249--38000550 Score: 500
Period size: 80 Copynumber: 3.8 Consensus size: 80
38000239 AACCCAAGTA
* * * * *
38000249 CCTTCGGGAATTAGC-CGGATATAG-CAACTCGCAGAAATGCCTTCGGGTCTTGGCCCGGATATA
1 CCTTCGGGACTTAGCTCGGATATAGTC-ACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATA
* *
38000312 GTCACTAGCACAAATG
65 GTCACTAGCGCAAAGG
38000328 CCTTCGGGACTTAGCTCGGATATAGTCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCTCGGATATAGTCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATAG
38000393 TCACTAGCGCAAAGG
66 TCACTAGCGCAAAGG
*
38000408 CCTTCGGGACTTAGCTGGGATATAGTCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCTCGGATATAGTCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATAG
38000473 TCACTAGCGCAAAGG
66 TCACTAGCGCAAAGG
*
38000488 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCTCGGATATAGTCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATAT
38000551 CATCCGAATA
Statistics
Matches: 211, Mismatches: 10, Indels: 3
0.94 0.04 0.01
Matches are distributed among these distances:
79 14 0.07
80 196 0.93
81 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAGCTCGGATATAGTCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATAG
TCACTAGCGCAAAGG
Found at i:38004560 original size:17 final size:18
Alignment explanation
Indices: 38004538--38004571 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
38004528 TTACATTGAA
38004538 GTGTTTT-AGTGAAAACT
1 GTGTTTTCAGTGAAAACT
*
38004555 GTGTTTTCATTGAAAAC
1 GTGTTTTCAGTGAAAAC
38004572 CCTTCTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (18 bp):
GTGTTTTCAGTGAAAACT
Found at i:38005145 original size:13 final size:13
Alignment explanation
Indices: 38005127--38005153 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
38005117 GAACTACCTT
38005127 CATATACCCGTTG
1 CATATACCCGTTG
38005140 CATATACCCGTTG
1 CATATACCCGTTG
38005153 C
1 C
38005154 CACATCTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.33, G:0.15, T:0.30
Consensus pattern (13 bp):
CATATACCCGTTG
Found at i:38005334 original size:29 final size:29
Alignment explanation
Indices: 38005297--38005373 Score: 127
Period size: 29 Copynumber: 2.7 Consensus size: 29
38005287 AATTATATTC
*
38005297 ATATGGCCCATTAGGCCCAAATCACCTGT
1 ATATGGCCCATTAGGCCCAAATCACATGT
*
38005326 ATATGGCCCATTAGGCCCAAATCACATTT
1 ATATGGCCCATTAGGCCCAAATCACATGT
*
38005355 ATATGGCCCGTTAGGCCCA
1 ATATGGCCCATTAGGCCCA
38005374 GTCACATTCA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 45 1.00
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATGT
Found at i:38006293 original size:28 final size:28
Alignment explanation
Indices: 38006261--38006374 Score: 131
Period size: 29 Copynumber: 4.0 Consensus size: 28
38006251 TACCTGTATC
* *
38006261 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
*
38006289 TGGCCCATTAGGCCCAAATCACCTGT-ATA
1 TGGCCCATTAGGCCC-AATCACAT-TCATA
* *
38006318 TGGCCCATTAGGCACAAATCACATTTATA
1 TGGCCCATTAGGC-CCAATCACATTCATA
* *
38006347 TGGCCCGTTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
38006375 ATCATGCTCA
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
28 27 0.37
29 44 0.60
30 2 0.03
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:38006358 original size:58 final size:57
Alignment explanation
Indices: 38006252--38006362 Score: 159
Period size: 58 Copynumber: 1.9 Consensus size: 57
38006242 AATTTCACAT
* * *
38006252 ACCTGTATCTGGCCCATTAAGCCCAATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
* * *
38006309 ACCTGTATATGGCCCATTAGGCACAAATCACATTTATATGGCCCGTTAGGCCCA
1 ACCTGTATATGGCCCATTAAGC-CAAATCACATTCATATGGCCCATTAGGCCCA
38006363 GTCACATTCA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 20 0.43
58 27 0.57
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (57 bp):
ACCTGTATATGGCCCATTAAGCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:38007463 original size:37 final size:37
Alignment explanation
Indices: 38007421--38007492 Score: 117
Period size: 37 Copynumber: 1.9 Consensus size: 37
38007411 CGAACCTTGG
38007421 ATCTCCTTGCTAGCTACTAACACCACCTCCCTACTTA
1 ATCTCCTTGCTAGCTACTAACACCACCTCCCTACTTA
* * *
38007458 ATCTCCTTGCTAGCTACTAACGCTACCTCTCTACT
1 ATCTCCTTGCTAGCTACTAACACCACCTCCCTACT
38007493 CCCTAAGTGG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.22, C:0.39, G:0.07, T:0.32
Consensus pattern (37 bp):
ATCTCCTTGCTAGCTACTAACACCACCTCCCTACTTA
Found at i:38008027 original size:37 final size:37
Alignment explanation
Indices: 38007985--38008056 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
38007975 TGAACCTTGG
38007985 ATCTCCTTGCTAGCTACTAACACCACCTCCCTACTTA
1 ATCTCCTTGCTAGCTACTAACACCACCTCCCTACTTA
* *
38008022 ATCTCCTTGCTAGCTACTAACGCCACCTCTCTACT
1 ATCTCCTTGCTAGCTACTAACACCACCTCCCTACT
38008057 CCCTAAGTGG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.22, C:0.40, G:0.07, T:0.31
Consensus pattern (37 bp):
ATCTCCTTGCTAGCTACTAACACCACCTCCCTACTTA
Found at i:38008341 original size:564 final size:564
Alignment explanation
Indices: 38007273--38008399 Score: 2218
Period size: 564 Copynumber: 2.0 Consensus size: 564
38007263 TTCTCATCTC
38007273 ATCGTTTTTCTCCCTGATAACCCCTTGATCTTTTCCTTAATTTTCTCTTCTGAACACTCCCCTTG
1 ATCGTTTTTCTCCCTGATAACCCCTTGATCTTTTCCTTAATTTTCTCTTCTGAACACTCCCCTTG
38007338 GAGTCCATCTTCACGCCACTACCATCCTTCTAGAAGGCCAAAATTAAACTTTTAAAAATACTAAG
66 GAGTCCATCTTCACGCCACTACCATCCTTCTAGAAGGCCAAAATTAAACTTTTAAAAATACTAAG
38007403 CTAAGATTCGAACCTTGGATCTCCTTGCTAGCTACTAACACCACCTCCCTACTTAATCTCCTTGC
131 CTAAGATTCGAACCTTGGATCTCCTTGCTAGCTACTAACACCACCTCCCTACTTAATCTCCTTGC
* *
38007468 TAGCTACTAACGCTACCTCTCTACTCCCTAAGTGGTGTCACTTAGCCACTCCTCCATAAGGCTTT
196 TAGCTACTAACGCCACCTCTCTACTCCCTAAGTGGTGTCACTTAGCCACTCCTCCACAAGGCTTT
38007533 TTGATGTTATTTTTCCCCTATTTTTATTTAAAGGCCCACCTACTTACCAACCCTGATTCTTTTAA
261 TTGATGTTATTTTTCCCCTATTTTTATTTAAAGGCCCACCTACTTACCAACCCTGATTCTTTTAA
38007598 TAATTAAATTATAATTTCATTTATTCCTAGGTTCAAACTCAAACCGTAATTAAGACCTACTATAA
326 TAATTAAATTATAATTTCATTTATTCCTAGGTTCAAACTCAAACCGTAATTAAGACCTACTATAA
38007663 TTATCACATAGCTAGGAACATAAAACACAATTTTTATCAAAACCGAAAACAAAAAAAGTTTGGGA
391 TTATCACATAGCTAGGAACATAAAACACAATTTTTATCAAAACCGAAAACAAAAAAAGTTTGGGA
38007728 TTTTGAGATTTTTGGGGCATTACAACTCTACCCCCTAAAAGAAATTTCGTCCTCGAAATTTCCAA
456 TTTTGAGATTTTTGGGGCATTACAACTCTACCCCCTAAAAGAAATTTCGTCCTCGAAATTTCCAA
38007793 CTACTAACACAGACTACCACACCACACTTCCGCTGCGCACTCTT
521 CTACTAACACAGACTACCACACCACACTTCCGCTGCGCACTCTT
38007837 ATCGTTTTTCTCCCTGATAACCCCTTGATCTTTTCCTTAATTTTCTCTTCTGAACACTCCCCTTG
1 ATCGTTTTTCTCCCTGATAACCCCTTGATCTTTTCCTTAATTTTCTCTTCTGAACACTCCCCTTG
38007902 GAGTCCATCTTCACGCCACTACCATCCTTCTAGAAGGCCAAAATTAAACTTTTAAAAATACTAAG
66 GAGTCCATCTTCACGCCACTACCATCCTTCTAGAAGGCCAAAATTAAACTTTTAAAAATACTAAG
*
38007967 CTAAGATTTGAACCTTGGATCTCCTTGCTAGCTACTAACACCACCTCCCTACTTAATCTCCTTGC
131 CTAAGATTCGAACCTTGGATCTCCTTGCTAGCTACTAACACCACCTCCCTACTTAATCTCCTTGC
38008032 TAGCTACTAACGCCACCTCTCTACTCCCTAAGTGGTGTCACTTAGCCACTCCTCCACAAGGCTTT
196 TAGCTACTAACGCCACCTCTCTACTCCCTAAGTGGTGTCACTTAGCCACTCCTCCACAAGGCTTT
38008097 TTGATGTTATTTTTCCCCTATTTTTATTTAAAGGCCCACCTACTTACCAACCCTGATTCTTTTAA
261 TTGATGTTATTTTTCCCCTATTTTTATTTAAAGGCCCACCTACTTACCAACCCTGATTCTTTTAA
38008162 TAATTAAATTATAATTTCATTTATTCCTAGGTTCAAACTCAAACCGTAATTAAGACCTACTATAA
326 TAATTAAATTATAATTTCATTTATTCCTAGGTTCAAACTCAAACCGTAATTAAGACCTACTATAA
38008227 TTATCACATAGCTAGGAACATAAAACACAATTTTTATCAAAACCGAAAACAAAAAAAGTTTGGGA
391 TTATCACATAGCTAGGAACATAAAACACAATTTTTATCAAAACCGAAAACAAAAAAAGTTTGGGA
*
38008292 TTTTGAGATTTTTGGGGCGTTACAACTCTACCCCCTAAAAGAAATTTCGTCCTCGAAATTTCCAA
456 TTTTGAGATTTTTGGGGCATTACAACTCTACCCCCTAAAAGAAATTTCGTCCTCGAAATTTCCAA
38008357 CTACTAACACAGACTACCACACCACACTTCCGCTGCGCACTCT
521 CTACTAACACAGACTACCACACCACACTTCCGCTGCGCACTCT
38008400 ATTCCAAACT
Statistics
Matches: 559, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
564 559 1.00
ACGTcount: A:0.30, C:0.27, G:0.10, T:0.33
Consensus pattern (564 bp):
ATCGTTTTTCTCCCTGATAACCCCTTGATCTTTTCCTTAATTTTCTCTTCTGAACACTCCCCTTG
GAGTCCATCTTCACGCCACTACCATCCTTCTAGAAGGCCAAAATTAAACTTTTAAAAATACTAAG
CTAAGATTCGAACCTTGGATCTCCTTGCTAGCTACTAACACCACCTCCCTACTTAATCTCCTTGC
TAGCTACTAACGCCACCTCTCTACTCCCTAAGTGGTGTCACTTAGCCACTCCTCCACAAGGCTTT
TTGATGTTATTTTTCCCCTATTTTTATTTAAAGGCCCACCTACTTACCAACCCTGATTCTTTTAA
TAATTAAATTATAATTTCATTTATTCCTAGGTTCAAACTCAAACCGTAATTAAGACCTACTATAA
TTATCACATAGCTAGGAACATAAAACACAATTTTTATCAAAACCGAAAACAAAAAAAGTTTGGGA
TTTTGAGATTTTTGGGGCATTACAACTCTACCCCCTAAAAGAAATTTCGTCCTCGAAATTTCCAA
CTACTAACACAGACTACCACACCACACTTCCGCTGCGCACTCTT
Found at i:38008924 original size:18 final size:18
Alignment explanation
Indices: 38008903--38008937 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
38008893 GCTCAGTGCG
38008903 CTTTACCTCCTCCACTAT
1 CTTTACCTCCTCCACTAT
* *
38008921 CTTTTCCTTCTCCACTA
1 CTTTACCTCCTCCACTA
38008938 ACTCTGAGAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.14, C:0.43, G:0.00, T:0.43
Consensus pattern (18 bp):
CTTTACCTCCTCCACTAT
Found at i:38010142 original size:15 final size:15
Alignment explanation
Indices: 38010122--38010157 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
38010112 GTTATCATTG
**
38010122 AAAACCCTTCTTAAA
1 AAAACCCTAATTAAA
38010137 AAAACCCTAATTAAA
1 AAAACCCTAATTAAA
38010152 AAAACC
1 AAAACC
38010158 TTTCAGTTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.56, C:0.25, G:0.00, T:0.19
Consensus pattern (15 bp):
AAAACCCTAATTAAA
Found at i:38011267 original size:28 final size:28
Alignment explanation
Indices: 38011172--38011270 Score: 119
Period size: 29 Copynumber: 3.5 Consensus size: 28
38011162 TACTTGTATC
* *
38011172 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATT-ATA
*
38011200 TGGCCCATTAGGCCCAAATCACCTGTATA
1 TGGCCCATTAGGCCCAAATCACAT-TATA
*
38011229 TGGCCTATTAGGCCCAAATCACATTATA
1 TGGCCCATTAGGCCCAAATCACATTATA
* *
38011257 AGGCCCGTTAGGCC
1 TGGCCCATTAGGCC
38011271 TAGTCACATT
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
28 29 0.48
29 31 0.51
30 1 0.02
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.25
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAAATCACATTATA
Found at i:38012243 original size:28 final size:28
Alignment explanation
Indices: 38012184--38012267 Score: 98
Period size: 28 Copynumber: 3.0 Consensus size: 28
38012174 GCCTATATCT
* * *
38012184 GGCCCATTAAGCCCAATCATATTCATAT
1 GGCCCATTAGGCCCAATCACATTCATAA
38012212 GGCCCATTAGGCCCAAATCACATT-ATAA
1 GGCCCATTAGGCCC-AATCACATTCATAA
** *
38012240 GGCCTGTTAGGCCCAGTCACATTCATAA
1 GGCCCATTAGGCCCAATCACATTCATAA
38012268 TCATGCTCAC
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
27 8 0.17
28 32 0.67
29 8 0.17
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (28 bp):
GGCCCATTAGGCCCAATCACATTCATAA
Found at i:38012348 original size:17 final size:18
Alignment explanation
Indices: 38012326--38012359 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
38012316 TGCCTATTAT
38012326 GGGCCCA-ATAGCCCATC
1 GGGCCCATATAGCCCATC
*
38012343 GGGCCCATTTAGCCCAT
1 GGGCCCATATAGCCCAT
38012360 TCTAGCCCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.21, C:0.38, G:0.24, T:0.18
Consensus pattern (18 bp):
GGGCCCATATAGCCCATC
Found at i:38013266 original size:29 final size:29
Alignment explanation
Indices: 38013169--38013268 Score: 139
Period size: 29 Copynumber: 3.5 Consensus size: 29
38013159 TACCTGTATC
* *
38013169 TGGCCCATTAAGCCC-AATCATATTTATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
* * *
38013197 TGGCCCATTAGACCCAAATCACCTGTATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
38013226 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
*
38013255 TGGCCCGTTAGGCC
1 TGGCCCATTAGGCC
38013269 TAGTCACATT
Statistics
Matches: 62, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
28 13 0.21
29 49 0.79
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTTATA
Found at i:38014218 original size:28 final size:29
Alignment explanation
Indices: 38014174--38014287 Score: 119
Period size: 29 Copynumber: 4.0 Consensus size: 29
38014164 TACCTATATC
*
38014174 TGGCCCATTAAGG-CC-AATCATATTCATA
1 TGGCCCATT-AGGCCCAAATCACATTCATA
*
38014202 TGGCCCATTAGGCCCAAATCACCTGT-ATA
1 TGGCCCATTAGGCCCAAATCACAT-TCATA
*
38014231 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* * * *
38014260 TCGCCCGTTAGG-CCTAGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
38014288 ATAATGCTCA
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
27 3 0.04
28 25 0.34
29 45 0.61
30 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:38014238 original size:57 final size:58
Alignment explanation
Indices: 38014165--38014273 Score: 141
Period size: 58 Copynumber: 1.9 Consensus size: 58
38014155 AATTTCTCAT
* * *
38014165 ACCTATATCTGGCCCATTAAGG-CC-AATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTATATATGGCCCATT-AGGCCCAAATCACATTCATATCGCCCATTAGGCCCAAATC
* * *
38014222 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATCGCCCGTTAGGCC
1 ACCTATATATGGCCCATTAGGCCCAAATCACATTCATATCGCCCATTAGGCC
38014274 TAGTCACATT
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
56 3 0.07
57 18 0.41
58 23 0.52
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.27
Consensus pattern (58 bp):
ACCTATATATGGCCCATTAGGCCCAAATCACATTCATATCGCCCATTAGGCCCAAATC
Found at i:38016943 original size:54 final size:54
Alignment explanation
Indices: 38016676--38017015 Score: 357
Period size: 54 Copynumber: 6.3 Consensus size: 54
38016666 TTAGTTTACC
* * * *
38016676 AAATTAACAAAATACCCCTGGTTTGTAAAATTACTAAAATGCCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGATTTATA
* * *
38016730 AAATCACCAAAATACCCCTGGTTTGTAAAATTACC-AAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGATTTATA
*
38016783 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTG-TTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC-TTGATTTATA
* * * *
38016837 AAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGA-TTTATA
* * * *
38016891 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATATCCC-TGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATA-CCCTTGATTTATA
** *** *** * * *
38016945 AAATTACTGAAATA-CCCTCGACCTGTAAAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTAAAATTACCAAAATACCCTTGATTTATA
*
38016999 AAATTACCAAAGTACCC
1 AAATTACCAAAATACCC
38017016 TTAATTTATA
Statistics
Matches: 245, Mismatches: 32, Indels: 17
0.83 0.11 0.06
Matches are distributed among these distances:
53 57 0.23
54 179 0.73
55 9 0.04
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGATTTATA
Found at i:38016951 original size:27 final size:27
Alignment explanation
Indices: 38016676--38016961 Score: 358
Period size: 27 Copynumber: 10.6 Consensus size: 27
38016666 TTAGTTTACC
*
38016676 AAATTAACAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
38016703 AAATTACTAAAATGCCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
38016730 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
38016757 AAATTACC-AAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
38016783 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
38016810 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
38016837 AAATTACTAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
38016864 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
38016891 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
38016918 AAATTACCAAAATATCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
**
38016945 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
38016962 TCGACCTGTA
Statistics
Matches: 224, Mismatches: 34, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
26 23 0.10
27 201 0.90
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:38016972 original size:81 final size:80
Alignment explanation
Indices: 38016676--38017015 Score: 310
Period size: 81 Copynumber: 4.2 Consensus size: 80
38016666 TTAGTTTACC
* * * * * * * * *
38016676 AAATTAACAAAATACCCCTGGTTTGTAAAATTACTAAAATGCCCTTGGTTTATAAAATCACCAAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCC-CGATTTGTAAAATTATCAAA
*
38016741 ATACCCCTGGTTTGTA
65 ATACCCCTAGTTTGTA
* * ** *
38016757 AAATTACC-AAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTA-CTAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCC-GATTTGTAAAATTATC-AA
* * *
38016820 AATACCCTTTGTTTATA
64 AATACCCCTAGTTTGTA
* *
38016837 AAATTACTAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTATCAA
1 AAATTACCAAAATACCCCTGA-TTTGTAAAATTACCAAAATACCCCGA-TTTGTAAAATTATCAA
38016901 AATACCCCTAGTTTGTA
64 AATACCCCTAGTTTGTA
* * ** ** **
38016918 AAATTACCAAAATATCCCTGATTTGTGAAATTACTGAAATACCCTCGACCTGTAAAATTATTGAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCC-CGATTTGTAAAATTATCAAA
* *
38016983 ATA-CCCTCGACTTGTA
65 ATACCCCTAG-TTTGTA
*
38016999 AAATTACCAAAGTACCC
1 AAATTACCAAAATACCC
38017016 TTAATTTATA
Statistics
Matches: 214, Mismatches: 36, Indels: 18
0.80 0.13 0.07
Matches are distributed among these distances:
79 1 0.00
80 70 0.33
81 139 0.65
82 4 0.02
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (80 bp):
AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCGATTTGTAAAATTATCAAAA
TACCCCTAGTTTGTA
Found at i:38017014 original size:27 final size:27
Alignment explanation
Indices: 38016676--38017016 Score: 259
Period size: 27 Copynumber: 12.7 Consensus size: 27
38016666 TTAGTTTACC
* *
38016676 AAATTAACAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* * * * *
38016703 AAATTACTAAAATGCCCTTGGTTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
38016730 AAATCACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* * **
38016757 AAATTACC-AAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
*
38016783 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* * *
38016810 AAATTACTAAAATACCCTTTG-TTTATA
1 AAATTACCAAAATACCC-TCGATTTGTA
* *
38016837 AAATTACTAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
*
38016864 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
* *
38016891 AAATTATCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
*
38016918 AAATTACCAAAATATCCCT-GATTTGTG
1 AAATTACCAAAATA-CCCTCGATTTGTA
** **
38016945 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*** *
38016972 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*
38016999 AAATTACCAAAGTACCCT
1 AAATTACCAAAATACCCT
38017017 TAATTTATAG
Statistics
Matches: 263, Mismatches: 39, Indels: 24
0.81 0.12 0.07
Matches are distributed among these distances:
26 26 0.10
27 232 0.88
28 5 0.02
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:38017082 original size:27 final size:27
Alignment explanation
Indices: 38017052--38017158 Score: 142
Period size: 27 Copynumber: 4.0 Consensus size: 27
38017042 CTCAATTTAC
* *
38017052 AAAATTATCGAAATACCACTGTAGGGT
1 AAAATTACCGAAATACCCCTGTAGGGT
38017079 AAAATTACCGAAATACCCCTGTAGGGT
1 AAAATTACCGAAATACCCCTGTAGGGT
* * *
38017106 AGAATTACCGAAATACCCGTATAGGGT
1 AAAATTACCGAAATACCCCTGTAGGGT
* * *
38017133 AGAATTATCGCAATACCCCTGTAGGG
1 AAAATTACCGAAATACCCCTGTAGGG
38017159 CTGGGTGGGT
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 71 1.00
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.23
Consensus pattern (27 bp):
AAAATTACCGAAATACCCCTGTAGGGT
Found at i:38017313 original size:6 final size:6
Alignment explanation
Indices: 38017287--38017352 Score: 55
Period size: 6 Copynumber: 10.8 Consensus size: 6
38017277 TTTCTATTAC
* * * *
38017287 CTGATA CTGATT CTAATT CTGATT CTG-TCAC CTAATT CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGAT--T CTGATT CTGATT CTGATT
38017336 CTGATT CT-AGTT CTGAT
1 CTGATT CTGA-TT CTGAT
38017353 AATGTTTCTT
Statistics
Matches: 48, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
5 2 0.04
6 42 0.88
7 3 0.06
8 1 0.02
ACGTcount: A:0.21, C:0.20, G:0.14, T:0.45
Consensus pattern (6 bp):
CTGATT
Done.