Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 122 of 356
Found at i:38908071 original size:15 final size:15
Alignment explanation
Indices: 38908051--38908079 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
38908041 GGGCATAGTA
38908051 AAATATTTAAAAAAT
1 AAATATTTAAAAAAT
38908066 AAATATTTAAAAAA
1 AAATATTTAAAAAA
38908080 GAGATACACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AAATATTTAAAAAAT
Found at i:38915403 original size:40 final size:40
Alignment explanation
Indices: 38915359--38915583 Score: 262
Period size: 40 Copynumber: 5.7 Consensus size: 40
38915349 GCTCCTCGTT
* *
38915359 CAAATGCCTTCGGGACATAGCCTGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
38915399 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
38915439 CAAATGCCTTTGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
38915478 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
38915518 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
38915559 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
38915584 CATCGTTCAA
Statistics
Matches: 164, Mismatches: 16, Indels: 10
0.86 0.08 0.05
Matches are distributed among these distances:
38 2 0.01
39 32 0.20
40 117 0.71
41 13 0.08
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:38915459 original size:79 final size:77
Alignment explanation
Indices: 38915359--38915583 Score: 247
Period size: 79 Copynumber: 2.8 Consensus size: 77
38915349 GCTCCTCGTT
* *
38915359 CAAATGCCTTCGGGACATAGCCTGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCC-GG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
38915424 ATTTAGTAACTCGCA
63 ATTTAGTAACTCGCA
* * * *
38915439 CAAATGCCTTTGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAATGCCTTCGGGCTTAG-CCGGTA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGG
*
38915503 ATTTAGTATCTCGCA
63 ATTTAGTAACTCGCA
* * * *
38915518 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAG-CCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
38915582 GA
62 GA
38915584 CATCGTTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
78 4 0.03
79 62 0.51
80 44 0.36
81 12 0.10
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (77 bp):
CAAATGCCTTCGGGCTTAGCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT
TAGTAACTCGCA
Found at i:38917572 original size:16 final size:17
Alignment explanation
Indices: 38917540--38917573 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
38917530 GGGAATGGAG
38917540 TTTGTTTGATATTTATT
1 TTTGTTTGATATTTATT
*
38917557 TTTGTTTG-TTTTTATT
1 TTTGTTTGATATTTATT
38917573 T
1 T
38917574 CATAATATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.12, C:0.00, G:0.12, T:0.76
Consensus pattern (17 bp):
TTTGTTTGATATTTATT
Found at i:38918837 original size:21 final size:21
Alignment explanation
Indices: 38918813--38918857 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
38918803 TATATCTACT
38918813 CAAGGAAATTATAATTCAA-GA
1 CAAGGAAATTATAA-TCAACGA
*
38918834 CAAGGGAATTATAATCAACGA
1 CAAGGAAATTATAATCAACGA
38918855 CAA
1 CAA
38918858 TAGAGCTACA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.51, C:0.13, G:0.16, T:0.20
Consensus pattern (21 bp):
CAAGGAAATTATAATCAACGA
Found at i:38920553 original size:15 final size:15
Alignment explanation
Indices: 38920533--38920562 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
38920523 CAACACTTGT
38920533 GCCGAAACCACAAAA
1 GCCGAAACCACAAAA
*
38920548 GCCGAAACCTCAAAA
1 GCCGAAACCACAAAA
38920563 AATACATTAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.33, G:0.13, T:0.03
Consensus pattern (15 bp):
GCCGAAACCACAAAA
Found at i:38931756 original size:27 final size:27
Alignment explanation
Indices: 38931718--38931771 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
38931708 CACAACATAG
*
38931718 CCATAAGATCTATCCTTTCGATATAAA
1 CCATAAGATCTATCATTTCGATATAAA
*
38931745 CCATAAGCTCTATCATTTCGATATAAA
1 CCATAAGATCTATCATTTCGATATAAA
38931772 TCATTCATCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.37, C:0.22, G:0.07, T:0.33
Consensus pattern (27 bp):
CCATAAGATCTATCATTTCGATATAAA
Found at i:38935032 original size:15 final size:15
Alignment explanation
Indices: 38934969--38935031 Score: 63
Period size: 15 Copynumber: 4.1 Consensus size: 15
38934959 AAAAATCCAT
38934969 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
38934984 ACAGAGATATCCAAG
1 ATAAAGAAATCCAAG
*
38934999 ATAAAGAAATTCCATG
1 ATAAAGAAA-TCCAAG
**
38935015 ATTTAGAAATCCAAG
1 ATAAAGAAATCCAAG
38935030 AT
1 AT
38935032 TATCAAAATG
Statistics
Matches: 37, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
15 25 0.68
16 12 0.32
ACGTcount: A:0.51, C:0.14, G:0.14, T:0.21
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:38939913 original size:16 final size:15
Alignment explanation
Indices: 38939866--38939928 Score: 58
Period size: 15 Copynumber: 4.1 Consensus size: 15
38939856 GGAAAAATAG
38939866 AAAAAGAA-AAGACAA
1 AAAAAGAAGAAGA-AA
* *
38939881 AAAAAG-AGCAGGGAA
1 AAAAAGAAG-AAGAAA
38939896 AAAAAGAAGAAGGAAA
1 AAAAAGAAGAA-GAAA
*
38939912 AAAAAAAAGAAGAAA
1 AAAAAGAAGAAGAAA
38939927 AA
1 AA
38939929 GGGAAAATGA
Statistics
Matches: 39, Mismatches: 5, Indels: 8
0.75 0.10 0.15
Matches are distributed among these distances:
14 1 0.03
15 21 0.54
16 17 0.44
ACGTcount: A:0.76, C:0.03, G:0.21, T:0.00
Consensus pattern (15 bp):
AAAAAGAAGAAGAAA
Found at i:38939924 original size:22 final size:21
Alignment explanation
Indices: 38939894--38939935 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
38939884 AAGAGCAGGG
*
38939894 AAAAAAAGAAGAAGGAAAAAA
1 AAAAAAAGAAAAAGGAAAAAA
*
38939915 AAAAAGAAGAAAAAGGGAAAA
1 AAAAA-AAGAAAAAGGAAAAA
38939936 TGAGATTTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (21 bp):
AAAAAAAGAAAAAGGAAAAAA
Found at i:38939935 original size:19 final size:20
Alignment explanation
Indices: 38939890--38939935 Score: 53
Period size: 19 Copynumber: 2.4 Consensus size: 20
38939880 AAAAAAGAGC
38939890 AGGGAAAAAAAGAAGAAGGAA
1 AGGGAAAAAAAGAAGAA-GAA
*
38939911 A--AAAAAAAAGAAGAA-AA
1 AGGGAAAAAAAGAAGAAGAA
38939928 AGGGAAAA
1 AGGGAAAA
38939936 TGAGATTTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 6
0.72 0.07 0.21
Matches are distributed among these distances:
17 3 0.14
19 17 0.81
21 1 0.05
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (20 bp):
AGGGAAAAAAAGAAGAAGAA
Found at i:38941881 original size:46 final size:46
Alignment explanation
Indices: 38941829--38941988 Score: 297
Period size: 46 Copynumber: 3.5 Consensus size: 46
38941819 AGTGTGCTCT
38941829 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
38941875 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
38941921 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
38941967 GTGATATGAAA--TGTAAGACCAT
1 CTGATATGAAATGTGTAAGACCAT
38941989 NNNNNNNNNN
Statistics
Matches: 113, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
44 11 0.10
46 102 0.90
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.24
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:38955576 original size:37 final size:37
Alignment explanation
Indices: 38955535--38955608 Score: 98
Period size: 37 Copynumber: 2.0 Consensus size: 37
38955525 ATCTCCTGTT
*
38955535 CAAATG-CTTCGGACCTTAGCCGG-TATAGTAACTCGCA
1 CAAATGCCTTCGGACATTA-CCGGATATA-TAACTCGCA
*
38955572 CAAATGCCTTCGGACATTACCGGATTTATAACTCGCA
1 CAAATGCCTTCGGACATTACCGGATATATAACTCGCA
38955609 TCACCAATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
37 19 0.58
38 14 0.42
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (37 bp):
CAAATGCCTTCGGACATTACCGGATATATAACTCGCA
Found at i:38958738 original size:21 final size:21
Alignment explanation
Indices: 38958714--38958758 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
38958704 TATATCTACT
38958714 CAAGGAAATTATAATTCAA-GA
1 CAAGGAAATTATAA-TCAACGA
*
38958735 CAAGGGAATTATAATCAACGA
1 CAAGGAAATTATAATCAACGA
38958756 CAA
1 CAA
38958759 TAGAGCTACA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.51, C:0.13, G:0.16, T:0.20
Consensus pattern (21 bp):
CAAGGAAATTATAATCAACGA
Found at i:38960418 original size:15 final size:15
Alignment explanation
Indices: 38960398--38960427 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
38960388 CAACACTTGT
38960398 GCCGAAACCACAAAA
1 GCCGAAACCACAAAA
*
38960413 GCCGAAACCTCAAAA
1 GCCGAAACCACAAAA
38960428 AATACATTAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.33, G:0.13, T:0.03
Consensus pattern (15 bp):
GCCGAAACCACAAAA
Found at i:38971545 original size:27 final size:27
Alignment explanation
Indices: 38971507--38971560 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
38971497 CACAACATAG
*
38971507 CCATAAGATCTATCCTTTCGATATAAA
1 CCATAAGATCTATCATTTCGATATAAA
*
38971534 CCATAAGCTCTATCATTTCGATATAAA
1 CCATAAGATCTATCATTTCGATATAAA
38971561 TCATTCATCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.37, C:0.22, G:0.07, T:0.33
Consensus pattern (27 bp):
CCATAAGATCTATCATTTCGATATAAA
Found at i:38974821 original size:15 final size:15
Alignment explanation
Indices: 38974758--38974820 Score: 63
Period size: 15 Copynumber: 4.1 Consensus size: 15
38974748 AAAAATCCAT
38974758 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
38974773 ACAGAGATATCCAAG
1 ATAAAGAAATCCAAG
*
38974788 ATAAAGAAATTCCATG
1 ATAAAGAAA-TCCAAG
**
38974804 ATTTAGAAATCCAAG
1 ATAAAGAAATCCAAG
38974819 AT
1 AT
38974821 TATCAAAATG
Statistics
Matches: 37, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
15 25 0.68
16 12 0.32
ACGTcount: A:0.51, C:0.14, G:0.14, T:0.21
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:38979835 original size:17 final size:17
Alignment explanation
Indices: 38979813--38979846 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
38979803 CAGGGGAAAG
*
38979813 AAAGAAGGAAGGAAAAA
1 AAAGAAAGAAGGAAAAA
38979830 AAAGAAAGAAGGAAAAA
1 AAAGAAAGAAGGAAAAA
38979847 GGGAAAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (17 bp):
AAAGAAAGAAGGAAAAA
Found at i:38979853 original size:21 final size:22
Alignment explanation
Indices: 38979804--38979853 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 22
38979794 AACAGAGAGC
*
38979804 AGGGGAAAGAAAGAAGGAAGGAA
1 AGGGAAAAGAAAGAAGGAA-GAA
*
38979827 A--AAAAAGAAAGAAGGAA-AA
1 AGGGAAAAGAAAGAAGGAAGAA
38979846 AGGGAAAA
1 AGGGAAAA
38979854 ATTGAGATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 6
0.71 0.10 0.19
Matches are distributed among these distances:
19 3 0.14
21 18 0.82
23 1 0.05
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (22 bp):
AGGGAAAAGAAAGAAGGAAGAA
Found at i:38982208 original size:46 final size:46
Alignment explanation
Indices: 38981927--38982202 Score: 471
Period size: 46 Copynumber: 6.0 Consensus size: 46
38981917 AGTGTGCTCT
*
38981927 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
38981973 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
38982019 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
38982065 CTGATATGAAATGTGTAAGACTATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
**
38982111 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * **
38982157 GTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
38982203 ATGACAGAAA
Statistics
Matches: 222, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 222 1.00
ACGTcount: A:0.39, C:0.15, G:0.23, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:38982262 original size:92 final size:90
Alignment explanation
Indices: 38981932--38982250 Score: 280
Period size: 92 Copynumber: 3.4 Consensus size: 90
38981922 GCTCTCTGAT
** * * * * * * **
38981932 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACCTGATATGAAATGTGTAAGACCAT
1 ATGAAATGAATAAGACCATAGCTGAAAGACACCATGGCAA-CT-ACATGAAAAGAATAAGACCAT
* *
38981997 GGTTGAAAGATACCATGGCAACCTGAT
64 GGTTGAAAGATACCATGGCAACATGAC
** * * * * * ** *
38982024 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACTAT
1 ATGAAATGAATAAGACCATAGCTGAAAGACACCATGGCAA-CT-ACATGAAAAGAATAAGACCAT
* *
38982089 GGTTGAAAGATACCATGGCAACCTGAT
64 GGTTGAAAGATACCATGGCAACATGAC
* * *
38982116 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCAT
1 ATGAAATGAATAAGACCATAGCTGAAAGACACCATGGCAAC-T-ACATGAAAAGAATAAGACCAT
38982181 GGTTGAAAGATACCATGGCAACATGAC
64 GGTTGAAAGATACCATGGCAACATGAC
*
38982208 A-GAAAATGAACGAGTAAGACCATAGCTGAAAGACACTATGGCA
1 ATG-AAATG-A--A-TAAGACCATAGCTGAAAGACACCATGGCA
38982251 TCATGTCAAA
Statistics
Matches: 206, Mismatches: 15, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
91 2 0.01
92 177 0.86
93 1 0.00
95 1 0.00
96 25 0.12
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.21
Consensus pattern (90 bp):
ATGAAATGAATAAGACCATAGCTGAAAGACACCATGGCAACTACATGAAAAGAATAAGACCATGG
TTGAAAGATACCATGGCAACATGAC
Found at i:38984011 original size:31 final size:31
Alignment explanation
Indices: 38983976--38984039 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
38983966 CAAAGATATC
*
38983976 TTTGTTCGTGTAGATAAATTCATTTTTTTGA
1 TTTGTTCGTGTAGATAAATTCATTTTTCTGA
38984007 TTTGTTCGTGTAGATAAATTCATTTTTCTGA
1 TTTGTTCGTGTAGATAAATTCATTTTTCTGA
38984038 TT
1 TT
38984040 GATTTTATCA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.22, C:0.08, G:0.16, T:0.55
Consensus pattern (31 bp):
TTTGTTCGTGTAGATAAATTCATTTTTCTGA
Found at i:38988745 original size:17 final size:17
Alignment explanation
Indices: 38988723--38988757 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
38988713 ATATGTCAGC
38988723 TCATCTACATATTTTCA
1 TCATCTACATATTTTCA
38988740 TCATCTACATATTTTCA
1 TCATCTACATATTTTCA
38988757 T
1 T
38988758 TTGGGTGGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.23, G:0.00, T:0.49
Consensus pattern (17 bp):
TCATCTACATATTTTCA
Found at i:38990052 original size:20 final size:20
Alignment explanation
Indices: 38990033--38990070 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
38990023 ATGTAAAAAT
*
38990033 TATATA-TTTAAAATATAAA
1 TATATATTTTAAAAAATAAA
*
38990052 TATGTATTTTAAAAAATAA
1 TATATATTTTAAAAAATAA
38990071 TATCTAATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (20 bp):
TATATATTTTAAAAAATAAA
Found at i:38991057 original size:20 final size:18
Alignment explanation
Indices: 38991032--38991069 Score: 58
Period size: 20 Copynumber: 2.0 Consensus size: 18
38991022 TTTTTATATA
38991032 TTTATAAAATATTATTAAAT
1 TTTATAAAA-ATT-TTAAAT
38991052 TTTATAAAAATTTTAAAT
1 TTTATAAAAATTTTAAAT
38991070 AAAATTATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 6 0.33
19 3 0.17
20 9 0.50
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
TTTATAAAAATTTTAAAT
Found at i:38991077 original size:21 final size:19
Alignment explanation
Indices: 38991053--38991099 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 19
38991043 TTATTAAATT
*
38991053 TTATAAAAATTTTAAATAAAA
1 TTATAAAAA-TTCAAA-AAAA
38991074 TTATAAAAATTCAAAAAAA
1 TTATAAAAATTCAAAAAAA
38991093 TT-TAAAA
1 TTATAAAA
38991100 TCATTTAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
18 5 0.20
19 6 0.24
20 5 0.20
21 9 0.36
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (19 bp):
TTATAAAAATTCAAAAAAA
Found at i:39001237 original size:69 final size:70
Alignment explanation
Indices: 39001105--39001237 Score: 205
Period size: 69 Copynumber: 1.9 Consensus size: 70
39001095 TAGTTTATTA
* * * * * *
39001105 CTAATTAATTTGCTGCTGTAATGCTGTCAATTATTGTCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
39001170 CTTAG
66 CTTAG
39001175 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
39001238 GTTATGTGCT
Statistics
Matches: 57, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
69 34 0.60
70 23 0.40
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.38
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:39002203 original size:119 final size:118
Alignment explanation
Indices: 39002012--39002614 Score: 735
Period size: 119 Copynumber: 5.1 Consensus size: 118
39002002 GACTTAAGGT
* *
39002012 CCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAAGCTTCATGCTGGAATTGTAT
1 CCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTAT
* *
39002077 CCGGACTTAAGGTCCACAAGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGAC
66 CCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGAC
* * * ** *
39002130 CCGCAGGCTAT-ATGCTGGAATTATATCCGGGCTTAAAGACCCGCAGGCTTTGTGCTGGAATTGT
1 CCGCAGGCT-TCGTGCTGGAATTGTATCCGGACTT-AAGGTCCGCAGGCTTCGTGCTGGAATTGT
39002194 ATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGAC
64 ATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGAC
* * * *
39002249 CCACAGGCTTCGTGCTGGAATTGTATCCGAACTTAAGGTCCGCAAGCTTCGTGTTGGAATTGTAT
1 CCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTAT
* * ** *
39002314 CTGGGCTTAAAGACCCGCAGGCTATAC--GCTGGAATTATATCCGGGCTTAAAGAC
66 CCGGACTT-AAGGTCCGCAGGCT-T-CGTGCTGGAATTGTATCCGGGCTTAAAGAC
* * * *
39002368 CCACAAGCTTTGTGCTGGAATTGTATCCGGACTTAAGGTCTGCAGGCTTCGTGCTGGAATTGTAT
1 CCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTAT
* ** * * *
39002433 CCGGGCTTAAAGACCCACAGGCTTCGTCCTGGAATTGTATCTGGGCTTAAAGAC
66 CCGGACTT-AAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGAC
* * ** * * *
39002487 CCGCAAGCTTCGTGCTGGAATTGTATCCGGACTTAAGATCCATAGGCTTCGTGCTGGTACTATAT
1 CCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTAT
* * * * * * *
39002552 TCGGACTTAAGGTCCGCAGGCTTCGTACTGGTACTATATCCGAGCTTAAAGTC
66 CCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGAC
*
39002605 CCGTAGGCTT
1 CCGCAGGCTT
39002615 TGTGTTGGTG
Statistics
Matches: 418, Mismatches: 59, Indels: 16
0.85 0.12 0.03
Matches are distributed among these distances:
117 1 0.00
118 106 0.25
119 309 0.74
120 1 0.00
121 1 0.00
ACGTcount: A:0.22, C:0.23, G:0.27, T:0.28
Consensus pattern (118 bp):
CCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTAT
CCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGAC
Found at i:39002213 original size:79 final size:79
Alignment explanation
Indices: 39002012--39002543 Score: 615
Period size: 79 Copynumber: 6.7 Consensus size: 79
39002002 GACTTAAGGT
** *
39002012 CCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAAGCTTCATGCTGGAATTGTAT
1 CCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGACCCGCAAGCTTCGTGCTGGAATTGTAT
* **
39002077 CCGGACTT-AAGGT
66 CCGGGCTTAAAGAC
* * * * * *
39002090 CCACAAGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTAT
1 CCGCAGGCTTCGTGCTGGAATTGTATCCGGACTT-AAGACCCGCAAGCT-TCGTGCTGGAATTGT
39002154 ATCCGGGCTTAAAGAC
64 ATCCGGGCTTAAAGAC
* ** *
39002170 CCGCAGGCTTTGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTAT
1 CCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGACCCGCAAGCTTCGTGCTGGAATTGTAT
39002235 CCGGGCTTAAAGAC
66 CCGGGCTTAAAGAC
* * ** *
39002249 CCACAGGCTTCGTGCTGGAATTGTATCCGAACTTAAGGTCCGCAAGCTTCGTGTTGGAATTGTAT
1 CCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGACCCGCAAGCTTCGTGCTGGAATTGTAT
*
39002314 CTGGGCTTAAAGAC
66 CCGGGCTTAAAGAC
* * * *
39002328 CCGCAGGCTATAC--GCTGGAATTATATCCGGGCTTAAAGACCCACAAGCTTTGTGCTGGAATTG
1 CCGCAGGCT-T-CGTGCTGGAATTGTATCCGGACTT-AAGACCCGCAAGCTTCGTGCTGGAATTG
* **
39002391 TATCCGGACTT-AAGGT
63 TATCCGGGCTTAAAGAC
* * * * *
39002407 CTGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCACAGGCTTCGTCCTGGAATTGTA
1 CCGCAGGCTTCGTGCTGGAATTGTATCCGGACTT-AAGACCCGCAAGCTTCGTGCTGGAATTGTA
*
39002472 TCTGGGCTTAAAGAC
65 TCCGGGCTTAAAGAC
* * ** *
39002487 CCGCAAGCTTCGTGCTGGAATTGTATCCGGACTTAAGATCCATAGGCTTCGTGCTGG
1 CCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGACCCGCAAGCTTCGTGCTGG
39002544 TACTATATTC
Statistics
Matches: 392, Mismatches: 52, Indels: 19
0.85 0.11 0.04
Matches are distributed among these distances:
77 1 0.00
78 33 0.08
79 256 0.65
80 101 0.26
81 1 0.00
ACGTcount: A:0.22, C:0.23, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGACCCGCAAGCTTCGTGCTGGAATTGTAT
CCGGGCTTAAAGAC
Found at i:39002333 original size:198 final size:198
Alignment explanation
Indices: 39001996--39002522 Score: 860
Period size: 198 Copynumber: 2.7 Consensus size: 198
39001986 ATTTGATGTA
* * *
39001996 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCA-A-GC
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACC-CACAGGC
* *
39002059 TTCATGCTGGAATTGTATCCGGACTTAAGGTCCACAAGCTTCGTGCTGGAATTGTATCCGGGCTT
65 TTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTGTATCCGGGCTT
* * *
39002124 AAAGACCCGCAGGCTATATGCTGGAATTATATCCGGGCTTAAAGACCCGCAGGCTTTGTGCTGGA
130 AAAGACCCGCAGGCTATACGCTGGAATTATATCCGGGCTTAAAGACCCACAAGCTTTGTGCTGGA
39002189 ATTG
195 ATTG
39002193 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCACAGGCT
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCACAGGCT
* * *
39002258 TCGTGCTGGAATTGTATCCGAACTTAAGGTCCGCAAGCTTCGTGTTGGAATTGTATCTGGGCTTA
66 TCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTGTATCCGGGCTTA
39002323 AAGACCCGCAGGCTATACGCTGGAATTATATCCGGGCTTAAAGACCCACAAGCTTTGTGCTGGAA
131 AAGACCCGCAGGCTATACGCTGGAATTATATCCGGGCTTAAAGACCCACAAGCTTTGTGCTGGAA
39002388 TTG
196 TTG
*
39002391 TATCCGGACTTAAGGTCTGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCACAGGCT
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCACAGGCT
* * * ** *
39002456 TCGTCCTGGAATTGTATCTGGGCTTAAAGACCCGCAAGCTTCGTGCTGGAATTGTATCCGGACTT
66 TCGTGCTGGAATTGTATCCGGACTT-AAGGTCCGCAAGCTTCGTGCTGGAATTGTATCCGGGCTT
39002521 AA
130 AA
39002523 GATCCATAGG
Statistics
Matches: 306, Mismatches: 21, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
196 2 0.01
197 55 0.18
198 213 0.70
199 36 0.12
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.28
Consensus pattern (198 bp):
TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCACAGGCT
TCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTGTATCCGGGCTTA
AAGACCCGCAGGCTATACGCTGGAATTATATCCGGGCTTAAAGACCCACAAGCTTTGTGCTGGAA
TTG
Found at i:39005794 original size:43 final size:43
Alignment explanation
Indices: 39005733--39005826 Score: 143
Period size: 43 Copynumber: 2.2 Consensus size: 43
39005723 TAGCCCAAGG
* *
39005733 GACACACGACCGTGCAACATAGCCATGTGTTGCACACAGCTGA
1 GACACACGACCGTCCAACATAGCCATGTGTCGCACACAGCTGA
* * *
39005776 GACACACGACCGTCCAACATAGCCGTGTGTCGCACACGGTTGA
1 GACACACGACCGTCCAACATAGCCATGTGTCGCACACAGCTGA
39005819 GACACACG
1 GACACACG
39005827 CCTGTGTCTT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.29, C:0.32, G:0.24, T:0.15
Consensus pattern (43 bp):
GACACACGACCGTCCAACATAGCCATGTGTCGCACACAGCTGA
Found at i:39032230 original size:20 final size:20
Alignment explanation
Indices: 39032205--39032245 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
39032195 ATACGACTTA
39032205 AATTGAAATGAATTGATTAT
1 AATTGAAATGAATTGATTAT
39032225 AATTGAAATGAATTGATTAT
1 AATTGAAATGAATTGATTAT
39032245 A
1 A
39032246 TTTTGGAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.46, C:0.00, G:0.15, T:0.39
Consensus pattern (20 bp):
AATTGAAATGAATTGATTAT
Found at i:39036631 original size:67 final size:67
Alignment explanation
Indices: 39036523--39036743 Score: 315
Period size: 67 Copynumber: 3.4 Consensus size: 67
39036513 AACACTTAGT
* * * * * *
39036523 ACCACTCATGTGACCTAGCCA-ATTTATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTG
1 ACCACGCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTGTCATTCACCTG
39036587 GA
66 GA
39036589 ACCACGCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTGTCATTCACCTG
1 ACCACGCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTGTCATTCACCTG
39036654 GA
66 GA
* *
39036656 ACCACGCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTGT-A--CACATA
1 ACCACGCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTGTCATTCACCTG
*
39036718 GT
66 GA
* *
39036720 ATCACCCATGCGACCTAGCTACAT
1 ACCACGCATGCGACCTAGCTACAT
39036744 CATAATGTCT
Statistics
Matches: 143, Mismatches: 11, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
64 27 0.19
66 19 0.13
67 97 0.68
ACGTcount: A:0.23, C:0.31, G:0.17, T:0.29
Consensus pattern (67 bp):
ACCACGCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTGTCATTCACCTG
GA
Found at i:39037511 original size:30 final size:30
Alignment explanation
Indices: 39037477--39037537 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
39037467 TCCTTAACTC
39037477 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
39037507 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
39037537 A
1 A
39037538 GGCTCAGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:39039412 original size:47 final size:47
Alignment explanation
Indices: 39039334--39039786 Score: 699
Period size: 47 Copynumber: 9.6 Consensus size: 47
39039324 CCCTTCGGGA
* * * * * * *
39039334 CTTATCATATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
39039381 CCTGTCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
39039428 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
39039475 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
39039522 CTTATTACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTA-T-CACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
39039571 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
39039620 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
39039667 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
39039714 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
39039761 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
39039787 CACAATTATC
Statistics
Matches: 377, Mismatches: 25, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
47 284 0.75
48 2 0.01
49 91 0.24
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:39039764 original size:239 final size:237
Alignment explanation
Indices: 39039339--39039786 Score: 770
Period size: 239 Copynumber: 1.9 Consensus size: 237
39039329 CGGGACTTAT
* * * *
39039339 CATATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACACTTTCA
1 CATATATATACACTTTCACATCCATCACATCGGCCACTCGGCCCTATCACATATATACACTTTCA
*
39039404 CATTCATCACATCGGCTATTAGGCCTCATCACATATATACACTTTCACATTCATCACATCGGCTA
66 CATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATCGGCTA
*
39039469 TTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATTACATAT
131 TTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
39039534 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
196 ATATACA--TTCACATTCATCACATCGGCCATTAGGCCTTATCA
* * *
39039578 CATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACTTTCA
1 CATATATATACACTTTCACATCCATCACATCGGCCACTCGGCCCTATCACATATATACACTTTCA
* * *
39039643 CATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTA
66 CATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATCGGCTA
39039708 TTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
131 TTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
39039773 ATATACATTCACAT
196 ATATACATTCACAT
39039787 CACAATTATC
Statistics
Matches: 197, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
237 7 0.04
239 190 0.96
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (237 bp):
CATATATATACACTTTCACATCCATCACATCGGCCACTCGGCCCTATCACATATATACACTTTCA
CATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATCGGCTA
TTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
ATATACATTCACATTCATCACATCGGCCATTAGGCCTTATCA
Found at i:39043277 original size:40 final size:40
Alignment explanation
Indices: 39043220--39043473 Score: 328
Period size: 40 Copynumber: 6.3 Consensus size: 40
39043210 CGAATACACG
* * *
39043220 TCACTAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * ** *
39043260 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * *
39043300 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* *
39043340 TCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
** *
39043380 TCACTAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * *
39043420 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
*
39043460 TCACTAGCATGAAT
1 TCACTAGCACGAAT
39043474 TGTGACACCC
Statistics
Matches: 183, Mismatches: 31, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 183 1.00
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
Found at i:39043433 original size:120 final size:120
Alignment explanation
Indices: 39043220--39043473 Score: 445
Period size: 120 Copynumber: 2.1 Consensus size: 120
39043210 CGAATACACG
* * *
39043220 TCACTAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGG
1 TCACTAGCATGAATGCTCTTCGAGACCTAGCCCGGATACAACACCAGCACGAATGCTCTTCGGGG
39043285 TTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
66 TTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
* * * *
39043340 TCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGG
1 TCACTAGCATGAATGCTCTTCGAGACCTAGCCCGGATACAACACCAGCACGAATGCTCTTCGGGG
39043405 TTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
66 TTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
39043460 TCACTAGCATGAAT
1 TCACTAGCATGAAT
39043474 TGTGACACCC
Statistics
Matches: 126, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
120 126 1.00
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (120 bp):
TCACTAGCATGAATGCTCTTCGAGACCTAGCCCGGATACAACACCAGCACGAATGCTCTTCGGGG
TTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
Found at i:39046371 original size:47 final size:47
Alignment explanation
Indices: 39046320--39046542 Score: 322
Period size: 47 Copynumber: 4.7 Consensus size: 47
39046310 TTAGGATTCT
* *
39046320 ATGTGATGGATGTGAACA-TGCATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
39046367 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
39046414 ATTTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
39046461 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* ** *
39046508 ACGTGATGGGTGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
39046543 TCCCGAAGGG
Statistics
Matches: 160, Mismatches: 15, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
46 1 0.01
47 159 0.99
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:39046717 original size:37 final size:37
Alignment explanation
Indices: 39046661--39046739 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
39046651 CCGAGCTCTA
* * *
39046661 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
* *
39046698 AAGACCCGATAATTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
39046735 AAGAC
1 AAGAC
39046740 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:39048162 original size:40 final size:40
Alignment explanation
Indices: 39048107--39048212 Score: 178
Period size: 40 Copynumber: 2.7 Consensus size: 40
39048097 TACATTAATT
* *
39048107 CTCTTCGAGACTTAGCCCGGATACATCACCAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACCAGCACGAATG
*
39048147 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACCAGCACGAATG
39048187 CTCTTCGGGACTTAGCCCGGAT-CATC
1 CTCTTCGGGACTTAGCCCGGATACATC
39048213 GTCGAGACCT
Statistics
Matches: 63, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
39 4 0.06
40 59 0.94
ACGTcount: A:0.24, C:0.31, G:0.22, T:0.24
Consensus pattern (40 bp):
CTCTTCGGGACTTAGCCCGGATACATCACCAGCACGAATG
Found at i:39048308 original size:38 final size:38
Alignment explanation
Indices: 39048266--39048340 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
39048256 GAATTTTAAT
*
39048266 CCGGACATAATCTCTGT-ACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCT-TCACATAGCCAGCGGGTCTTTAC
* *
39048304 CCGGACATAATCTCTTCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTTCACATAGCCAGCGGGTCTTTA
39048341 AACTCGGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (38 bp):
CCGGACATAATCTCTTCACATAGCCAGCGGGTCTTTAC
Found at i:39050553 original size:47 final size:47
Alignment explanation
Indices: 39050478--39050779 Score: 382
Period size: 47 Copynumber: 6.4 Consensus size: 47
39050468 TTCAGGACTT
* * * * * *
39050478 ATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCC-C
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
* *
39050524 TGTCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTC
1 -ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
*
39050572 ATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTC
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
* * *
39050619 ATCACATATATACACTTTCACATTCATCACATTGACCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
39050666 ATCACATATATATACACTTTCACATTCATCACATCGGCCATTA---CT-
1 ATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
*
39050711 ATCACATATATATACAC-TTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
39050759 ATCACATATATATACACTTTC
1 ATCAC--ATATATACACTTTC
39050780 GCCTTATCAC
Statistics
Matches: 232, Mismatches: 15, Indels: 14
0.89 0.06 0.05
Matches are distributed among these distances:
44 25 0.11
45 17 0.07
46 2 0.01
47 133 0.57
48 18 0.08
49 37 0.16
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
Found at i:39050790 original size:26 final size:26
Alignment explanation
Indices: 39050754--39050805 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
39050744 CGGCCATTAG
39050754 GCCTTATCACATATATATACACTTTC
1 GCCTTATCACATATATATACACTTTC
39050780 GCCTTATCACATATATATACACTTTC
1 GCCTTATCACATATATATACACTTTC
39050806 ACATTCATCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.27, G:0.04, T:0.38
Consensus pattern (26 bp):
GCCTTATCACATATATATACACTTTC
Found at i:39050811 original size:168 final size:167
Alignment explanation
Indices: 39050624--39050948 Score: 530
Period size: 168 Copynumber: 1.9 Consensus size: 167
39050614 GCCTCATCAC
*
39050624 ATATATACACTTTCACATTCATCACATTGACCATTAGGCCTTATCACATATATATACACTTTCAC
1 ATATATACACTTTCACATTCATCACATCGACCATTAGGCCTTATCACATATATATACACTTTCAC
39050689 ATTCATCACATCGGCCATT-AC-TATCACATATATATACAC-TTCACATTCATCACATCGGCCAT
66 ATTCATCACATCGGCCATTGACTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCAT
39050751 TAGGCCTTATCACATATATATACACTTTCGCCTTATCACAT
129 TAGGCCTTATCAC--ATATATACACTTTCGCCTTATCACAT
*
39050792 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCAC
1 ATATATACACTTTCACATTCATCACATCGACCATTAGGCCTTATCACATATATATACACTTTCAC
* *
39050857 ATTCATCACATCGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATTGGCCAT
66 ATTCATCACATCGGCCATT--GACTTATCACATATATACACTTTCACATTCATCACATCGGCCAT
*
39050922 TCGGCCTTATCACATATATACACTTTC
129 TAGGCCTTATCACATATATACACTTTC
39050949 ACATTCATCA
Statistics
Matches: 147, Mismatches: 5, Indels: 9
0.91 0.03 0.06
Matches are distributed among these distances:
168 82 0.56
169 14 0.10
170 10 0.07
171 35 0.24
172 6 0.04
ACGTcount: A:0.31, C:0.29, G:0.07, T:0.34
Consensus pattern (167 bp):
ATATATACACTTTCACATTCATCACATCGACCATTAGGCCTTATCACATATATATACACTTTCAC
ATTCATCACATCGGCCATTGACTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
GGCCTTATCACATATATACACTTTCGCCTTATCACAT
Found at i:39050816 original size:75 final size:74
Alignment explanation
Indices: 39050710--39050854 Score: 281
Period size: 75 Copynumber: 1.9 Consensus size: 74
39050700 CGGCCATTAC
39050710 TATCACATATATATACACTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
1 TATCACATATATATACACTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
39050775 CTTTCGCCT
66 CTTTCGCCT
39050784 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 TATCACATATATATACAC-TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
39050849 ACTTTC
65 ACTTTC
39050855 ACATTCATCA
Statistics
Matches: 70, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
74 18 0.26
75 52 0.74
ACGTcount: A:0.32, C:0.28, G:0.06, T:0.34
Consensus pattern (74 bp):
TATCACATATATATACACTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
CTTTCGCCT
Found at i:39050910 original size:47 final size:47
Alignment explanation
Indices: 39050780--39051046 Score: 426
Period size: 47 Copynumber: 5.6 Consensus size: 47
39050770 ATACACTTTC
39050780 GCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAG
1 GCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAG
*
39050829 GCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCG
1 GCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAG
* *
39050878 GCCTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCG
1 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
*
39050925 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAG
1 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
**
39050972 GCCTTATCACATATATACACTTTCACATTCATCACATTAGCCATTAG
1 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
* *
39051019 GCCTTATCACATATATATACATTCACAT
1 GCCTTATCACATATATACACTTTCACAT
39051047 CACAATTATC
Statistics
Matches: 208, Mismatches: 10, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
47 150 0.72
49 58 0.28
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.34
Consensus pattern (47 bp):
GCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
Found at i:39058108 original size:17 final size:18
Alignment explanation
Indices: 39058095--39058289 Score: 110
Period size: 18 Copynumber: 10.9 Consensus size: 18
39058085 TAATCTTCAA
39058095 TGATATGCAATCTTAGATG
1 TGATATGCAATCTTAGA-G
39058114 TGATATGCAATCTTAGA-
1 TGATATGCAATCTTAGAG
* *
39058131 T-ATGATACAATCTTAGATA
1 TGAT-ATGCAATCTTAGA-G
39058150 TGAT-TGCAATCTTAGCTA-
1 TGATATGCAATCTTAG--AG
*
39058168 TGATA--CAATCTTAGATA
1 TGATATGCAATCTTAGA-G
*
39058185 TGAT-TGCAATCTTA-AA
1 TGATATGCAATCTTAGAG
* *
39058201 T-ATGATACAATCTTAGATA
1 TGAT-ATGCAATCTTAGA-G
39058220 TGAT-TGCAATCTTAGA-
1 TGATATGCAATCTTAGAG
* *
39058236 T-ATGATACAATCTTAGATA
1 TGAT-ATGCAATCTTAGA-G
*
39058255 TGAT-TGCAATCTTAGATA
1 TGATATGCAATCTTAGA-G
*
39058273 TGATATACAATCTTAGA
1 TGATATGCAATCTTAGA
39058290 AGATATGATT
Statistics
Matches: 147, Mismatches: 7, Indels: 44
0.74 0.04 0.22
Matches are distributed among these distances:
15 5 0.03
16 5 0.03
17 47 0.32
18 51 0.35
19 32 0.22
20 7 0.05
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (18 bp):
TGATATGCAATCTTAGAG
Found at i:39058164 original size:35 final size:35
Alignment explanation
Indices: 39058102--39058289 Score: 322
Period size: 35 Copynumber: 5.3 Consensus size: 35
39058092 CAATGATATG
*
39058102 CAATCTTAGATGTGATATGCAATCTTAGATATGATA
1 CAATCTTAGATATGAT-TGCAATCTTAGATATGATA
*
39058138 CAATCTTAGATATGATTGCAATCTTAGCTATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
*
39058173 CAATCTTAGATATGATTGCAATCTTAAATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
39058208 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
39058243 CAATCTTAGATATGATTGCAATCTTAGATATGATATA
1 CAATCTTAGATATGATTGCAATCTTAGATATG--ATA
39058280 CAATCTTAGA
1 CAATCTTAGA
39058290 AGATATGATT
Statistics
Matches: 145, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
35 117 0.81
36 15 0.10
37 13 0.09
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (35 bp):
CAATCTTAGATATGATTGCAATCTTAGATATGATA
Found at i:39064990 original size:44 final size:44
Alignment explanation
Indices: 39064940--39065081 Score: 132
Period size: 44 Copynumber: 3.3 Consensus size: 44
39064930 CGCCTTAATC
*
39064940 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATTCT
1 CCCTAAGCAGTAGGGTAGCAGGTTAAATTTGCAGATCTTATTCT
* * ** ** * *
39064984 CCCTAAGCAGTAATGG-AGCAGATCGAA---GACCCACCTTAATC-
1 CCCTAAGCAGT-AGGGTAGCAGGTTAAATTTG-CAGATCTTATTCT
*
39065025 CCCTAAGCAGTAAGGTAGCAGGTTAAATTTGCAGATCTTATTCT
1 CCCTAAGCAGTAGGGTAGCAGGTTAAATTTGCAGATCTTATTCT
*
39065069 CCCTCAGCAGTAG
1 CCCTAAGCAGTAG
39065082 TGGAGAAGAT
Statistics
Matches: 72, Mismatches: 19, Indels: 14
0.69 0.18 0.13
Matches are distributed among these distances:
40 3 0.04
41 20 0.28
42 8 0.11
43 8 0.11
44 30 0.42
45 3 0.04
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.26
Consensus pattern (44 bp):
CCCTAAGCAGTAGGGTAGCAGGTTAAATTTGCAGATCTTATTCT
Found at i:39065078 original size:85 final size:87
Alignment explanation
Indices: 39064932--39065295 Score: 457
Period size: 85 Copynumber: 4.3 Consensus size: 87
39064922 AAATTCAGCG
*
39064932 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATTCTCCCTAAGCAGTAA
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATTCTCCCTAAGCAGTAG
* *
39064997 TGGAGCAGATCGA-A-GACCCA
66 CGGAGCAGATCGAGATGACTCA
* * *
39065017 CCTTAATCCCCTAAGCAGTAAGGTAGCAGGTTAAATTTGCAGATCTTATTCTCCCTCAGCAGTAG
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATTCTCCCTAAGCAGTAG
* * *
39065082 TGGAGAAGATCGA-A-GACTCG
66 CGGAGCAGATCGAGATGACTCA
* * *
39065102 TCTTAATCCCCTAAGCAGTAGGGTAAAAGG-----TTCGCAGATCTTA-TCTCCCTAAGCAGTAG
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATTCTCCCTAAGCAGTAG
* *
39065161 CAGAGCAGATCGATGATGACTCG
66 CGGAGCAGATCGA-GATGACTCA
* *
39065184 CATTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATT-TCCCTAAGCGGTAG
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATTCTCCCTAAGCAGTAG
*
39065248 CGGAGCAAATCGAAGATGA-TGCA
66 CGGAGCAGATCG-AGATGACT-CA
39065271 CCTTAA-CCCCTAAGCAGTAGGGTAA
1 CCTTAATCCCCTAAGCAGTAGGGTAA
39065296 TAGACCAAGA
Statistics
Matches: 243, Mismatches: 25, Indels: 21
0.84 0.09 0.07
Matches are distributed among these distances:
79 25 0.10
80 12 0.05
81 1 0.00
82 33 0.14
85 104 0.43
86 20 0.08
87 46 0.19
88 2 0.01
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.25
Consensus pattern (87 bp):
CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATTCTCCCTAAGCAGTAG
CGGAGCAGATCGAGATGACTCA
Found at i:39065217 original size:167 final size:167
Alignment explanation
Indices: 39064932--39065295 Score: 452
Period size: 167 Copynumber: 2.2 Consensus size: 167
39064922 AAATTCAGCG
* *
39064932 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATTCTCCCTAAGCAGTAA
1 CCTTAATCCCCTAAGCAGTAGGGTAAAAGG----ATTCGCAGATCTTATTCTCCCTAAGCAGTAA
** * *
39064997 TGGAGCAGATCGAAGACCCACCTTAATCCCCTAAGCAGTAAGGTAGCAGGTTAAATTTGCAGATC
62 CAGAGCAGATCGAAGACCCACATTAATCCCCTAAGCAGTAAGGTAACAGGTTAAATTTGCAGATC
* * * *
39065062 TTATTCTCCCTCAGCAGTAGTGGAG-AAGATCGAAGA-CT-CG
127 TTATT-TCCCTAAGCAGTAGCGGAGCAA-ATCGAAGAGATGCA
* *
39065102 TCTTAATCCCCTAAGCAGTAGGGTAAAAGG-TTCGCAGATCTTA-TCTCCCTAAGCAGTAGCAGA
1 CCTTAATCCCCTAAGCAGTAGGGTAAAAGGATTCGCAGATCTTATTCTCCCTAAGCAGTAACAGA
* * *
39065165 GCAGATCGATGATGACTCGCATTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCT
66 GCAGATCGA--A-GACCCACATTAATCCCCTAAGCAGTAAGGTAACAGGTTAAATTTGCAGATCT
*
39065230 TATTTCCCTAAGCGGTAGCGGAGCAAATCGAAGATGATGCA
128 TATTTCCCTAAGCAGTAGCGGAGCAAATCGAAGA-GATGCA
39065271 CCTTAA-CCCCTAAGCAGTAGGGTAA
1 CCTTAATCCCCTAAGCAGTAGGGTAA
39065296 TAGACCAAGA
Statistics
Matches: 170, Mismatches: 17, Indels: 16
0.84 0.08 0.08
Matches are distributed among these distances:
164 26 0.15
165 12 0.07
166 25 0.15
167 53 0.31
168 20 0.12
169 6 0.04
170 28 0.16
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.25
Consensus pattern (167 bp):
CCTTAATCCCCTAAGCAGTAGGGTAAAAGGATTCGCAGATCTTATTCTCCCTAAGCAGTAACAGA
GCAGATCGAAGACCCACATTAATCCCCTAAGCAGTAAGGTAACAGGTTAAATTTGCAGATCTTAT
TTCCCTAAGCAGTAGCGGAGCAAATCGAAGAGATGCA
Found at i:39066095 original size:206 final size:207
Alignment explanation
Indices: 39065302--39066424 Score: 1912
Period size: 207 Copynumber: 5.4 Consensus size: 207
39065292 GTAATAGACC
*
39065302 AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGACATCTC
1 AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTC
* * *
39065367 TGTATTATCAAAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCA
66 TGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCA
39065432 GATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACA
131 GATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACA
39065497 AGGAACAAATCG
196 AGGAACAAATCG
*
39065509 AAGACATAGCTGATTTGGTTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTC
1 AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTC
* * *
39065574 TGTATTGTCAGAGAACAAATTGAAGTTTGGCGTCTCCCTATTCGATGGAGGGCAGACACATAGCA
66 TGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCA
*
39065639 GATCTGGCCTTCAGATGTTTATACTGAACCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACA
131 GATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACA
39065704 AGGAACAAATCG
196 AGGAACAAATCG
39065716 AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTC
1 AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTC
* *
39065781 TGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGATGGAGGGTAGACACATAGCA
66 TGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCA
*
39065846 GATCTGGCCTTCAGATGTTTATACTGAAGGAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACA
131 GATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACA
39065911 AGGAACAAATCG
196 AGGAACAAATCG
*
39065923 AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATG-TTTGACATCTC
1 AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTC
* * *
39065987 TGTATTATCAAAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCA
66 TGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCA
39066052 GATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACA
131 GATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACA
*
39066117 AGGAAGAAATCG
196 AGGAACAAATCG
*
39066129 AAGACATAGCTGAATTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTC
1 AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTC
* * *
39066194 TGTATTGTCAGAGAACAAATCGAAGTTTGGCATCTCCATATTCGACGGAGGACAGACATATAGCA
66 TGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCA
** * * * *
39066259 GATCTAACCTTCAGATGATTAGACTGAA--ATAGATCCAAGATGGTTTGGTATCATTGTGCTTAC
131 GATCTGGCCTTCAGATGTTTATACTGAAGCA-AGATCCAAGATGGTTTGGCATCCTTGTGCTTAC
39066322 AAGGAGA-AAATCG
195 AAGGA-ACAAATCG
* * *
39066335 AAGACATAGCTGATTTGGCTTTCGCGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTC
1 AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTC
* *
39066400 TGTATTGTCAGGGAACAAATTGAAG
66 TGTATTGTCAGAGAACAAATCGAAG
39066425 AAGCAGATTT
Statistics
Matches: 870, Mismatches: 43, Indels: 7
0.95 0.05 0.01
Matches are distributed among these distances:
205 1 0.00
206 323 0.37
207 546 0.63
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (207 bp):
AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTC
TGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCA
GATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACA
AGGAACAAATCG
Found at i:39066187 original size:413 final size:413
Alignment explanation
Indices: 39065302--39066419 Score: 1909
Period size: 413 Copynumber: 2.7 Consensus size: 413
39065292 GTAATAGACC
*
39065302 AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGACATCTC
1 AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTC
* * *
39065367 TGTATTATCAAAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCA
66 TGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCA
39065432 GATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACA
131 GATCTGGCCTTCAGATGTTTATACTGAAG-AAGATCCAAGATGGTTTGGCATCCTTGTGCTTACA
*
39065497 AGGAACAAATCGAAGACATAGCTGATTTGGTTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATG
195 AGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATG
** * *
39065562 ATTTGGCATCTCTGTATTGTCAGAGAACAAATTGAAGTTTGGCGTCTCCCTATTCGATGGAGGGC
260 ATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGC
39065627 AGACACATAGCAGATCTGGCCTTCAGATGTTTATACTGAACCAAGATCCAAGATGGTTTGGCATC
325 AGACACATAGCAGATCTGGCCTTCAGATGTTTATACTGAACCAAGATCCAAGATGGTTTGGCATC
39065692 CTTGTGCTTACAAGGAACAAATCG
390 CTTGTGCTTACAAGGAACAAATCG
39065716 AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTC
1 AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTC
* *
39065781 TGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGATGGAGGGTAGACACATAGCA
66 TGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCA
39065846 GATCTGGCCTTCAGATGTTTATACTGAAGGAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACA
131 GATCTGGCCTTCAGATGTTTATACTGAA-GAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACA
39065911 AGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATG
195 AGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATG
* * *
39065976 -TTTGACATCTCTGTATTATCAAAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGC
260 ATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGC
*
39066040 AGACACATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATC
325 AGACACATAGCAGATCTGGCCTTCAGATGTTTATACTGAACCAAGATCCAAGATGGTTTGGCATC
*
39066105 CTTGTGCTTACAAGGAAGAAATCG
390 CTTGTGCTTACAAGGAACAAATCG
*
39066129 AAGACATAGCTGAATTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTC
1 AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTC
* * *
39066194 TGTATTGTCAGAGAACAAATCGAAGTTTGGCATCTCCATATTCGACGGAGGACAGACATATAGCA
66 TGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCA
** * * * *
39066259 GATCTAACCTTCAGATGATTAGACTGAA-ATAGATCCAAGATGGTTTGGTATCATTGTGCTTACA
131 GATCTGGCCTTCAGATGTTTATACTGAAGA-AGATCCAAGATGGTTTGGCATCCTTGTGCTTACA
* * *
39066323 AGGAGA-AAATCGAAGACATAGCTGATTTGGCTTTCGCGTGTTTACGCTGAAGCAAATCTAAGAT
195 AGGA-ACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGAT
*
39066387 GATTTGGCATCTCTGTATTGTCAGGGAACAAAT
259 GATTTGGCATCTCTGTATTGTCAGAGAACAAAT
39066420 TGAAGAAGCA
Statistics
Matches: 665, Mismatches: 35, Indels: 9
0.94 0.05 0.01
Matches are distributed among these distances:
411 1 0.00
412 92 0.14
413 320 0.48
414 251 0.38
415 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (413 bp):
AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTC
TGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCA
GATCTGGCCTTCAGATGTTTATACTGAAGAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAA
GGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGA
TTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCA
GACACATAGCAGATCTGGCCTTCAGATGTTTATACTGAACCAAGATCCAAGATGGTTTGGCATCC
TTGTGCTTACAAGGAACAAATCG
Found at i:39066845 original size:19 final size:19
Alignment explanation
Indices: 39066820--39066910 Score: 134
Period size: 19 Copynumber: 4.9 Consensus size: 19
39066810 ATAATCTTCA
*
39066820 ATGATATGCAATCTTAGAC
1 ATGATATGCAATCTTAGAT
*
39066839 GTGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
39066858 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
39066875 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
39066893 ATGATATACAATCTTAGA
1 ATGATATGCAATCTTAGA
39066911 AGATATGATT
Statistics
Matches: 65, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
17 16 0.25
18 16 0.25
19 33 0.51
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.35
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:39066860 original size:14 final size:15
Alignment explanation
Indices: 39066841--39066896 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
39066831 TCTTAGACGT
39066841 GATATG-CAATCTTA
1 GATATGACAATCTTA
39066855 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
39066872 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
39066890 GATATGA
1 GATATGA
39066897 TATACAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:39066889 original size:35 final size:37
Alignment explanation
Indices: 39066828--39066917 Score: 125
Period size: 35 Copynumber: 2.5 Consensus size: 37
39066818 CAATGATATG
*
39066828 CAATCTTAGACGTGATATGCAATCTTAGATATG-ATA
1 CAATCTTAGACATGATATGCAATCTTAGATATGAATA
*
39066864 CAATCTTAGATATGAT-TGCAATCTTAGATATGATATA
1 CAATCTTAGACATGATATGCAATCTTAGATATGA-ATA
39066901 CAATCTTAGA-A-GATATG
1 CAATCTTAGACATGATATG
39066918 ATTTTGTAAT
Statistics
Matches: 49, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
35 19 0.39
36 17 0.35
37 13 0.27
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.34
Consensus pattern (37 bp):
CAATCTTAGACATGATATGCAATCTTAGATATGAATA
Found at i:39072723 original size:21 final size:20
Alignment explanation
Indices: 39072699--39072738 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 20
39072689 TGAGTATTTT
39072699 AATGTTTGATGATAGATTATG
1 AATGTTTGATGATA-ATTATG
39072720 AATGTTTGATGATAATTAT
1 AATGTTTGATGATAATTAT
39072739 ACAAGTTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.35, C:0.00, G:0.20, T:0.45
Consensus pattern (20 bp):
AATGTTTGATGATAATTATG
Found at i:39072748 original size:21 final size:21
Alignment explanation
Indices: 39072699--39072746 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
39072689 TGAGTATTTT
*
39072699 AATGTTTGATGATAGATTATG
1 AATGTTTGATGATAGATTATC
39072720 AATGTTTGATGATA-ATTATAC
1 AATGTTTGATGATAGATTAT-C
39072741 AA-GTTT
1 AATGTTT
39072747 TGTTATGTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 9 0.36
21 16 0.64
ACGTcount: A:0.35, C:0.02, G:0.19, T:0.44
Consensus pattern (21 bp):
AATGTTTGATGATAGATTATC
Found at i:39077512 original size:23 final size:22
Alignment explanation
Indices: 39077486--39077536 Score: 66
Period size: 23 Copynumber: 2.3 Consensus size: 22
39077476 TGGCCGGATT
39077486 TCCCTTCTCCCCTCCCTTCTCTC
1 TCCCTTCTCCCCTCCC-TCTCTC
* *
39077509 TCCCTTCTCTCTTCCCTCTCTC
1 TCCCTTCTCCCCTCCCTCTCTC
*
39077531 TTCCTT
1 TCCCTT
39077537 TTTTTCTTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
22 11 0.44
23 14 0.56
ACGTcount: A:0.00, C:0.55, G:0.00, T:0.45
Consensus pattern (22 bp):
TCCCTTCTCCCCTCCCTCTCTC
Found at i:39077513 original size:11 final size:11
Alignment explanation
Indices: 39077486--39077536 Score: 59
Period size: 11 Copynumber: 4.5 Consensus size: 11
39077476 TGGCCGGATT
*
39077486 TCCCTTCTCCCC
1 TCCCTTCT-CTC
39077498 TCCCTTCTCTC
1 TCCCTTCTCTC
39077509 TCCCTTCTCTC
1 TCCCTTCTCTC
39077520 TTCCC-TCTCTC
1 -TCCCTTCTCTC
*
39077531 TTCCTT
1 TCCCTT
39077537 TTTTTCTTTC
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
10 3 0.09
11 20 0.57
12 12 0.34
ACGTcount: A:0.00, C:0.55, G:0.00, T:0.45
Consensus pattern (11 bp):
TCCCTTCTCTC
Found at i:39078025 original size:3 final size:3
Alignment explanation
Indices: 39078010--39078071 Score: 61
Period size: 3 Copynumber: 20.0 Consensus size: 3
39078000 GTCATTTTTA
* * * *
39078010 TAT TAT TAG TAT TAT TAG TAT TAC TAT TAT TAT TAT TAT GTAT TAG
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT
*
39078056 TAT ATAT TTT TAT TAT
1 TAT -TAT TAT TAT TAT
39078072 GTACGCGTAT
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
3 41 0.87
4 6 0.13
ACGTcount: A:0.32, C:0.02, G:0.06, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:39078068 original size:23 final size:22
Alignment explanation
Indices: 39078013--39078074 Score: 81
Period size: 23 Copynumber: 2.8 Consensus size: 22
39078003 ATTTTTATAT
*
39078013 TATTAGTATTATTA-GTATTAC
1 TATTATTATTATTATGTATTAC
*
39078034 TATTATTATTATTATGTATTAG
1 TATTATTATTATTATGTATTAC
*
39078056 TATATATTTTTATTATGTA
1 TAT-TATTATTATTATGTA
39078075 CGCGTATACA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
21 13 0.36
22 9 0.25
23 14 0.39
ACGTcount: A:0.32, C:0.02, G:0.08, T:0.58
Consensus pattern (22 bp):
TATTATTATTATTATGTATTAC
Found at i:39078081 original size:23 final size:23
Alignment explanation
Indices: 39078037--39078082 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
39078027 GTATTACTAT
**
39078037 TATTATTATTATGTATTAGTATA
1 TATTATTATTATGTACGAGTATA
* *
39078060 TATTTTTATTATGTACGCGTATA
1 TATTATTATTATGTACGAGTATA
39078083 CATATATATT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.30, C:0.04, G:0.11, T:0.54
Consensus pattern (23 bp):
TATTATTATTATGTACGAGTATA
Found at i:39078146 original size:25 final size:24
Alignment explanation
Indices: 39078099--39078146 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
39078089 TATTTTTTCA
*
39078099 TATTTAATATTTTTATTTCATTTT
1 TATTTAATATTTTTATTTAATTTT
39078123 TATTCTAATA-TTTTATTATAATTT
1 TATT-TAATATTTTTATT-TAATTT
39078147 ATATATATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (24 bp):
TATTTAATATTTTTATTTAATTTT
Found at i:39079812 original size:43 final size:44
Alignment explanation
Indices: 39079738--39079820 Score: 105
Period size: 43 Copynumber: 1.9 Consensus size: 44
39079728 CAAAATTTTT
* * * *
39079738 GGGAGAAAAATAAAAGGCTCAGTTGAATATTCTACAAATTGTGG
1 GGGAAAAAAATAAAAGCCTCAATAGAATATTCTACAAATTGTGG
* *
39079782 GGGAAAAAAAT-AAAGCCTCAATAGAGTATTCTACTAATT
1 GGGAAAAAAATAAAAGCCTCAATAGAATATTCTACAAATT
39079821 CCTGCGATGG
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
43 23 0.70
44 10 0.30
ACGTcount: A:0.43, C:0.11, G:0.20, T:0.25
Consensus pattern (44 bp):
GGGAAAAAAATAAAAGCCTCAATAGAATATTCTACAAATTGTGG
Found at i:39086032 original size:69 final size:69
Alignment explanation
Indices: 39085943--39086081 Score: 260
Period size: 69 Copynumber: 2.0 Consensus size: 69
39085933 CAAGACTCTA
*
39085943 TCAGCCCTACCACCACTACAAAACCTGCTGAAAATCCTACAGCCACTATTATTCCTGTTTTGGAA
1 TCAGCCCTACCACAACTACAAAACCTGCTGAAAATCCTACAGCCACTATTATTCCTGTTTTGGAA
39086008 CCTG
66 CCTG
*
39086012 TCAGCCCTACCACAACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCCTGTTTTGGAA
1 TCAGCCCTACCACAACTACAAAACCTGCTGAAAATCCTACAGCCACTATTATTCCTGTTTTGGAA
39086077 CCTG
66 CCTG
39086081 T
1 T
39086082 TTTTCCTATC
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 68 1.00
ACGTcount: A:0.29, C:0.32, G:0.12, T:0.27
Consensus pattern (69 bp):
TCAGCCCTACCACAACTACAAAACCTGCTGAAAATCCTACAGCCACTATTATTCCTGTTTTGGAA
CCTG
Found at i:39087469 original size:129 final size:137
Alignment explanation
Indices: 39087219--39087478 Score: 320
Period size: 129 Copynumber: 1.9 Consensus size: 137
39087209 GCTTCTGTTT
* * *
39087219 TCAGGCACACTTAGGCACATGCCTTCACCATACTGCTTAGCTCATACATAGACACAGAAACAGTA
1 TCAGGCACACCTAGGCACATGCCTTCACAATACTGCTTAGCGCATACATAGACACAGAAACAGTA
*
39087284 ATCTCCAGACATGGACAATTCAATAGGAAACAACAAAAACAAAAGGGTCCAATTATTAGAAATGC
66 ATCTCCAAACATGGAC-A--CAATAGGAAACAACAAAAACAAAAGGGTCCAATTATTAGAAATGC
39087349 ACACTGACAA
128 ACACTGACAA
* *
39087359 TCAGGCACACCTAGGCACATGCCTTCACAATACTGCTT-G-GC-TA-A-A-ACATAGAAATAGT-
1 TCAGGCACACCTAGGCACATGCCTTCACAATACTGCTTAGCGCATACATAGACACAGAAACAGTA
* * * ** * *
39087417 GTCTCCAAACATGGAC-CATTAGGAAACCATGAAACCAAGAGGGTCCAATTATTAGAAATGCA
66 ATCTCCAAACATGGACACAATAGGAAACAACAAAAACAAAAGGGTCCAATTATTAGAAATGCA
39087479 TATTGCTAAG
Statistics
Matches: 107, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
129 40 0.37
133 14 0.13
134 11 0.10
135 1 0.01
136 1 0.01
137 2 0.02
138 1 0.01
139 1 0.01
140 36 0.34
ACGTcount: A:0.40, C:0.24, G:0.17, T:0.20
Consensus pattern (137 bp):
TCAGGCACACCTAGGCACATGCCTTCACAATACTGCTTAGCGCATACATAGACACAGAAACAGTA
ATCTCCAAACATGGACACAATAGGAAACAACAAAAACAAAAGGGTCCAATTATTAGAAATGCACA
CTGACAA
Found at i:39088309 original size:25 final size:25
Alignment explanation
Indices: 39088275--39088324 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
39088265 ATCATGGCAG
39088275 AAAGAACTATTTTCAACAAACCAAT
1 AAAGAACTATTTTCAACAAACCAAT
39088300 AAAGAACTATTTTCAACAAACCAAT
1 AAAGAACTATTTTCAACAAACCAAT
39088325 CTCATTAAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.52, C:0.20, G:0.04, T:0.24
Consensus pattern (25 bp):
AAAGAACTATTTTCAACAAACCAAT
Found at i:39090275 original size:6 final size:6
Alignment explanation
Indices: 39090266--39090299 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
39090256 AAAAGCACCA
39090266 GCAACG GCAACG GCAACG GCAACG GCAACG GCAA
1 GCAACG GCAACG GCAACG GCAACG GCAACG GCAA
39090300 AGCTGAGCCG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.35, C:0.32, G:0.32, T:0.00
Consensus pattern (6 bp):
GCAACG
Found at i:39103231 original size:39 final size:39
Alignment explanation
Indices: 39103186--39103265 Score: 142
Period size: 39 Copynumber: 2.1 Consensus size: 39
39103176 GGGGTTTTAA
*
39103186 TTAGAAAGAGATTTCAGTTAATCAACCTAGAGTCAGTTG
1 TTAGAAAGAGATTTCAATTAATCAACCTAGAGTCAGTTG
*
39103225 TTAGAAAGAGATTTCAATTAATCAACCTAGAGTTAGTTG
1 TTAGAAAGAGATTTCAATTAATCAACCTAGAGTCAGTTG
39103264 TT
1 TT
39103266 CTTACTCTCG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (39 bp):
TTAGAAAGAGATTTCAATTAATCAACCTAGAGTCAGTTG
Found at i:39104231 original size:22 final size:22
Alignment explanation
Indices: 39104170--39104223 Score: 81
Period size: 22 Copynumber: 2.5 Consensus size: 22
39104160 ACAACTCAAG
*
39104170 GCCGTAAATAGGACAGCACATA
1 GCCGTAAATAAGACAGCACATA
* *
39104192 GCCTTAAACAAGACAGCACATA
1 GCCGTAAATAAGACAGCACATA
39104214 GCCGTAAATA
1 GCCGTAAATA
39104224 TTGCAGCAAC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.43, C:0.24, G:0.19, T:0.15
Consensus pattern (22 bp):
GCCGTAAATAAGACAGCACATA
Found at i:39104454 original size:22 final size:22
Alignment explanation
Indices: 39104426--39104485 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
39104416 GCAAATACGT
*
39104426 TTGGCACACAACTATA-ATTAGG
1 TTGGCACACAACCATATA-TAGG
* *
39104448 TTGGCACAGAGCCATATATAGG
1 TTGGCACACAACCATATATAGG
39104470 TTGGCACA-AAGCCATA
1 TTGGCACACAA-CCATA
39104486 ATCAGAATAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
21 1 0.03
22 30 0.94
23 1 0.03
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (22 bp):
TTGGCACACAACCATATATAGG
Found at i:39104696 original size:41 final size:42
Alignment explanation
Indices: 39104632--39104756 Score: 171
Period size: 42 Copynumber: 3.0 Consensus size: 42
39104622 TAAAAGCCAC
* * * *
39104632 CGGCGAATCCACGATCGTCAAGCAACCATACGATCCTTAA-T
1 CGGCGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATT
*
39104673 CGGCGGATCCACGGTCGTTAAGCAACCATGCGATCCTCAATT
1 CGGCGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATT
** *
39104715 CGATGGATCCACGGTCATCAAGCAACCATGCGATCCTCAATT
1 CGGCGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATT
39104757 TCTTCCTCCG
Statistics
Matches: 74, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
41 35 0.47
42 39 0.53
ACGTcount: A:0.28, C:0.31, G:0.20, T:0.21
Consensus pattern (42 bp):
CGGCGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATT
Found at i:39105064 original size:54 final size:54
Alignment explanation
Indices: 39104994--39105328 Score: 284
Period size: 54 Copynumber: 6.2 Consensus size: 54
39104984 TTCACCTTAC
* * * * *
39104994 AAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCGGTAATTTTACAAACC
1 AAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAACT
* * * ** *
39105048 AATGGTATTTCT-GTAAATTTTGA-AAGTCAAAGGTATTTTTGTAATTTTGTA-AAATT
1 AAGGGTATTT-TGGT-AATTTT-ACAAATCAAGGGTATTTCGGTAA-TTT-TACAAACT
* * ** * *
39105104 AAGGGTATTTCT-GTAATTTTCCAAATCAAGAGTATTTTAGTAATTTTCCAAATT
1 AAGGGTATTT-TGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAACT
* * * **
39105158 AGGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAGTT
1 AAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAACT
* * * * * * *
39105212 AAGGGTATTTTAGTAATTTTATAAGTCGAGGGTATTTCGATAATTTCACAAACC
1 AAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAACT
* *
39105266 AAGGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTAGGTAATTTTACAAACT
1 AAGGGTATTTTGGTAATTTTACAAATC-AAGGGTATTTCGGTAATTTTACAAACT
*
39105320 AGGGGTATT
1 AAGGGTATT
39105329 CAGTAATTTT
Statistics
Matches: 227, Mismatches: 45, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
53 3 0.01
54 158 0.70
55 44 0.19
56 20 0.09
57 2 0.01
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (54 bp):
AAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAACT
Found at i:39105082 original size:28 final size:28
Alignment explanation
Indices: 39105024--39105123 Score: 98
Period size: 28 Copynumber: 3.6 Consensus size: 28
39105014 ACAAACCAAG
* * *
39105024 GGTATTTCGGTAA-TTT-TACAAACCAAT
1 GGTATTTCTGTAATTTTGTA-AAATCAAA
*
39105051 GGTATTTCTGTAAATTTTG-AAAGTCAAA
1 GGTATTTCTGT-AATTTTGTAAAATCAAA
* * *
39105079 GGTATTTTTGTAATTTTGTAAAATTAAG
1 GGTATTTCTGTAATTTTGTAAAATCAAA
39105107 GGTATTTCTGTAATTTT
1 GGTATTTCTGTAATTTT
39105124 CCAAATCAAG
Statistics
Matches: 60, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
27 17 0.28
28 39 0.65
29 4 0.07
ACGTcount: A:0.31, C:0.07, G:0.17, T:0.45
Consensus pattern (28 bp):
GGTATTTCTGTAATTTTGTAAAATCAAA
Found at i:39105203 original size:81 final size:80
Alignment explanation
Indices: 39104996--39105363 Score: 280
Period size: 81 Copynumber: 4.5 Consensus size: 80
39104986 CACCTTACAA
* * * * *
39104996 GGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCGGTAATTTTACAAACCAATGGTATTTCT-
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCGGTAATTTTACAAATCAAGGGTATTT-TA
* * *
39105060 GTAAATTTTGAAAGTCAA
65 GT-AATTTTCAAA-TTAG
* * ** * * *
39105078 AGGTATTTTTGTAATTTTGTA-AAATTAAGGGTATTTCTGTAATTTTCCAAATCAAGAGTATTTT
1 GGGTATTTTGGTAA-TTT-TACAAACCAAGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTT
39105142 AGTAATTTTCCAAATTAG
64 AGTAATTTT-CAAATTAG
* * * * *
39105160 GGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAGTTAAGGGTATTTTAG
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTTAG
* *
39105225 TAATTTT-ATAAGTCG
66 TAATTTTCA-AATTAG
* * * * *
39105240 AGGGTATTTCGATAATTTCACAAACCAAGGGTATTTTGGTAATTTTACAAA-CTAGGGGTA-TTT
1 -GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCGGTAATTTTACAAATC-AAGGGTATTTT
*
39105303 AGGTAATTTTACAAACTAG
64 A-GTAATTTT-CAAATTAG
** ** * * *
39105322 GGGTA-TTCAGTAATTTTGTAAACTAAGAGTATTTCAGTAATT
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCGGTAATT
39105364 CTACCCTACA
Statistics
Matches: 228, Mismatches: 47, Indels: 24
0.76 0.16 0.08
Matches are distributed among these distances:
79 1 0.00
80 38 0.17
81 109 0.48
82 36 0.16
83 42 0.18
84 2 0.01
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.40
Consensus pattern (80 bp):
GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTTAG
TAATTTTCAAATTAG
Found at i:39105232 original size:27 final size:27
Alignment explanation
Indices: 39104993--39105338 Score: 242
Period size: 27 Copynumber: 12.8 Consensus size: 27
39104983 TTTCACCTTA
* * * * *
39104993 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTAGTAATTTTACAAAT
** *
39105020 CAAGGGTATTTCGGTAATTTTACAAAC
1 CAAGGGTATTTTAGTAATTTTACAAAT
* *
39105047 CAATGGTATTTCT-GTAAATTTTGA-AAGT
1 CAAGGGTATTT-TAGT-AATTTT-ACAAAT
* *
39105075 CAAAGGTATTTTTGTAATTTTGTA-AAAT
1 CAAGGGTATTTTAGTAA-TTT-TACAAAT
* *
39105103 TAAGGGTATTTCT-GTAATTTTCCAAAT
1 CAAGGGTATTT-TAGTAATTTTACAAAT
* *
39105130 CAAGAGTATTTTAGTAATTTTCCAAAT
1 CAAGGGTATTTTAGTAATTTTACAAAT
* * *
39105157 TAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTAGTAATTTTACAAAT
* * *
39105184 CGAGGGTATTTCAGTAATTTTACAAGT
1 CAAGGGTATTTTAGTAATTTTACAAAT
* * *
39105211 TAAGGGTATTTTAGTAATTTTATAAGT
1 CAAGGGTATTTTAGTAATTTTACAAAT
* * * *
39105238 CGAGGGTA-TTTCGATAATTTCACAAAC
1 CAAGGGTATTTTAG-TAATTTTACAAAT
*
39105265 CAAGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTAGTAATTTTACAAAT
*
39105291 CTAGGGGTA-TTTAGGTAATTTTACAAA-
1 C-AAGGGTATTTTA-GTAATTTTACAAAT
* *
39105318 CTAGGGGTA-TTCAGTAATTTT
1 C-AAGGGTATTTTAGTAATTTT
39105339 GTAAACTAAG
Statistics
Matches: 263, Mismatches: 43, Indels: 27
0.79 0.13 0.08
Matches are distributed among these distances:
26 18 0.07
27 198 0.75
28 44 0.17
29 3 0.01
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTTTACAAAT
Found at i:39105344 original size:26 final size:26
Alignment explanation
Indices: 39105142--39105363 Score: 135
Period size: 27 Copynumber: 8.3 Consensus size: 26
39105132 AGAGTATTTT
* * *
39105142 AGTAATTTTCCAAATTAGGGGTATTTT
1 AGTAATTTTACAAACTAGGGGTA-TTC
* *
39105169 GGTAATTTTACAAA-TCGAGGGTATTTC
1 AGTAATTTTACAAACTAG-GGGTA-TTC
** * *
39105196 AGTAATTTTACAAGTTAAGGGTATTTT
1 AGTAATTTTACAAACTAGGGGTA-TTC
* * *
39105223 AGTAATTTTA-TAAGTCGAGGGTATTTC
1 AGTAATTTTACAAACTAG-GGGTA-TTC
* * * *
39105250 -GATAATTTCACAAACCAAGGGTATTTT
1 AG-TAATTTTACAAACTAGGGGTA-TTC
* *
39105277 GGTAATTTTACAAACTAGGGGTATTT
1 AGTAATTTTACAAACTAGGGGTATTC
39105303 AGGTAATTTTACAAACTAGGGGTATTC
1 A-GTAATTTTACAAACTAGGGGTATTC
** * *
39105330 AGTAATTTTGTAAACTAAGAGTATTTC
1 AGTAATTTTACAAACTAGGGGTA-TTC
39105357 AGTAATT
1 AGTAATT
39105364 CTACCCTACA
Statistics
Matches: 156, Mismatches: 31, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
26 26 0.17
27 126 0.81
28 4 0.03
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (26 bp):
AGTAATTTTACAAACTAGGGGTATTC
Found at i:39105382 original size:27 final size:27
Alignment explanation
Indices: 39105352--39105428 Score: 118
Period size: 27 Copynumber: 2.9 Consensus size: 27
39105342 AACTAAGAGT
39105352 ATTTCAGTAATTCTACCCTACAGGGGC
1 ATTTCAGTAATTCTACCCTACAGGGGC
* *
39105379 ATTTTAGTAATTCTACCCTACAGGGGT
1 ATTTCAGTAATTCTACCCTACAGGGGC
* *
39105406 ATTTCAGTAATACTAGCCTACAG
1 ATTTCAGTAATTCTACCCTACAG
39105429 ATATGAGATT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (27 bp):
ATTTCAGTAATTCTACCCTACAGGGGC
Found at i:39108015 original size:25 final size:25
Alignment explanation
Indices: 39107981--39108031 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
39107971 TACAAAAATA
39107981 TATGCTAACCCATCCCATCCAACCC
1 TATGCTAACCCATCCCATCCAACCC
39108006 TATGCTAACCCATCCCATCCAACCC
1 TATGCTAACCCATCCCATCCAACCC
39108031 T
1 T
39108032 GCACTTGCCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.27, C:0.47, G:0.04, T:0.22
Consensus pattern (25 bp):
TATGCTAACCCATCCCATCCAACCC
Found at i:39108206 original size:22 final size:22
Alignment explanation
Indices: 39108148--39108198 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
39108138 GCTCAAGGTC
* *
39108148 GTAAACAGGATAGCATATAGCA
1 GTAAACAAGATAGCACATAGCA
*
39108170 GTAAACAAGATAGCACATAGCC
1 GTAAACAAGATAGCACATAGCA
39108192 GTAAACA
1 GTAAACA
39108199 TTGAAGCAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.47, C:0.18, G:0.20, T:0.16
Consensus pattern (22 bp):
GTAAACAAGATAGCACATAGCA
Found at i:39108666 original size:41 final size:41
Alignment explanation
Indices: 39108608--39108764 Score: 224
Period size: 41 Copynumber: 3.8 Consensus size: 41
39108598 AAAAGCCACC
39108608 GGTGGATCCACGATCGTCAAGCAACCATGCGATCCTTAATT
1 GGTGGATCCACGATCGTCAAGCAACCATGCGATCCTTAATT
* *
39108649 GGTGGATCTACGGTCGTCAAGCAACCATGCGATCCTTAATT
1 GGTGGATCCACGATCGTCAAGCAACCATGCGATCCTTAATT
* * * * *
39108690 GGTGGATCTATGATCGTCAAGCAACCATGCGATTCTCAATC
1 GGTGGATCCACGATCGTCAAGCAACCATGCGATCCTTAATT
* * *
39108731 GGTGGATCCACGGTCATCAAGCAACCATACGATC
1 GGTGGATCCACGATCGTCAAGCAACCATGCGATC
39108765 TTCAATTTCT
Statistics
Matches: 103, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 103 1.00
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (41 bp):
GGTGGATCCACGATCGTCAAGCAACCATGCGATCCTTAATT
Found at i:39109109 original size:27 final size:25
Alignment explanation
Indices: 39109008--39109315 Score: 145
Period size: 27 Copynumber: 11.4 Consensus size: 25
39108998 TTTCACCATA
* ** *
39109008 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGT-AAT-TTTAAAT
* *
39109035 CAAGGGTATTTCGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTT--AAAT
* **
39109062 CAATGGTATTTTTATAAATTTTGAAAGT
1 CAAGGGTATTTTGGT-AATTTT-AAA-T
*
39109090 CAAGGGTATTTTTGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAA-TTT-TAAAT
* *
39109117 TAGGGGTATTTCT-GTAATTTTCCAAAT
1 CAAGGGTATTT-TGGTAATTTT--AAAT
* * *
39109144 AAAGTGTATTTCGGTAATTTTCCAAAT
1 CAAGGGTATTTTGGTAATTTT--AAAT
* * *
39109171 TAGGGGTAATTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTT--AAAT
* *
39109198 CGAGGGTATTTTGGTAATTTTACAGGT
1 CAAGGGTATTTTGGTAATTTTA-A-AT
* *
39109225 CAAGGGTATTTCGGTAATTTTACAAA
1 CAAGGGTATTTTGGTAATTTTA-AAT
*
39109251 CTAGGGGTATTTTGGTAATTTTACAAAT
1 C-AAGGGTATTTTGGTAATTTT--AAAT
* *
39109279 C-AGGTGTA-TTTAGTAATTTTGTAAAG
1 CAAGG-GTATTTTGGTAA-TTT-TAAAT
39109305 CAAGGGTATTT
1 CAAGGGTATTT
39109316 CAGTAATTCT
Statistics
Matches: 222, Mismatches: 39, Indels: 40
0.74 0.13 0.13
Matches are distributed among these distances:
25 3 0.01
26 24 0.11
27 163 0.73
28 30 0.14
29 2 0.01
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.40
Consensus pattern (25 bp):
CAAGGGTATTTTGGTAATTTTAAAT
Found at i:39109161 original size:54 final size:54
Alignment explanation
Indices: 39109091--39109323 Score: 177
Period size: 54 Copynumber: 4.3 Consensus size: 54
39109081 TTTGAAAGTC
** ** * *
39109091 AAGGGTATTTTTGTAATTTTGTAAATTAGGGGT-ATTTCTGTAATTTTCCAAATA
1 AAGGGTATTTCGGTAATTTTCCAAATTAGGGGTAATTT-GGTAATTTTACAAATA
* *
39109145 AAGTGTATTTCGGTAATTTTCCAAATTAGGGGTAATTTGGTAATTTTACAAATC
1 AAGGGTATTTCGGTAATTTTCCAAATTAGGGGTAATTTGGTAATTTTACAAATA
* * * ** * *
39109199 GAGGGTATTTTGGTAATTTTACAGGTCAAGGGT-ATTTCGGTAATTTTACAAACT-
1 AAGGGTATTTCGGTAATTTTCCAAATTAGGGGTAATTT-GGTAATTTTACAAA-TA
* * * * * * ** **
39109253 AGGGGTATTTTGGTAATTTTACAAATCAGGTGT-ATTTAGTAATTTTGTAAAGC
1 AAGGGTATTTCGGTAATTTTCCAAATTAGGGGTAATTTGGTAATTTTACAAATA
*
39109306 AAGGGTATTTCAGTAATT
1 AAGGGTATTTCGGTAATT
39109324 CTACCCTGTA
Statistics
Matches: 146, Mismatches: 29, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
53 30 0.21
54 111 0.76
55 5 0.03
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.42
Consensus pattern (54 bp):
AAGGGTATTTCGGTAATTTTCCAAATTAGGGGTAATTTGGTAATTTTACAAATA
Found at i:39109205 original size:81 final size:79
Alignment explanation
Indices: 39109093--39109323 Score: 246
Period size: 81 Copynumber: 2.9 Consensus size: 79
39109083 TGAAAGTCAA
* * ** * * *
39109093 GGGTATTTTTGTAATTTTGTAAATTAGGGGTATTTCTGTAATTTTCCAAATAAAGTGTATTTCGG
1 GGGTAATTTGGTAATTTTACAAATCA-GGGTATTT-TGTAATTTTACAAATAAAGGGTATTTCGG
* *
39109158 TAATTTTCCAAATTAG
64 TAATTTTACAAACTAG
** *
39109174 GGGTAATTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAGGTCAAGGGTATTTCGG
1 GGGTAATTTGGTAATTTTACAAATC-AGGGTATTTT-GTAATTTTACAAATAAAGGGTATTTCGG
39109239 TAATTTTACAAACTAG
64 TAATTTTACAAACTAG
* * ** ** *
39109255 GGGTATTTTGGTAATTTTACAAATCAGGTGTATTTAGTAATTTTGTAAAGCAAGGGTATTTCAGT
1 GGGTAATTTGGTAATTTTACAAATCAGG-GTATTTTGTAATTTTACAAATAAAGGGTATTTCGGT
39109320 AATT
65 AATT
39109324 CTACCCTGTA
Statistics
Matches: 127, Mismatches: 20, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
80 31 0.24
81 95 0.75
82 1 0.01
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.42
Consensus pattern (79 bp):
GGGTAATTTGGTAATTTTACAAATCAGGGTATTTTGTAATTTTACAAATAAAGGGTATTTCGGTA
ATTTTACAAACTAG
Found at i:39109374 original size:27 final size:27
Alignment explanation
Indices: 39109308--39109387 Score: 90
Period size: 27 Copynumber: 3.0 Consensus size: 27
39109298 TGTAAAGCAA
**
39109308 GGGTATTTCAGTAATTCTACCCTGTAG
1 GGGTATTTCAGTAATTCTACCCTACAG
*
39109335 GGGCT-TTTTAGTAATTCTACCCTACAG
1 GGG-TATTTCAGTAATTCTACCCTACAG
* * *
39109362 GGGTATTACAGTAATACTAGCCTACA
1 GGGTATTTCAGTAATTCTACCCTACA
39109388 AATATGAGAT
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
26 1 0.02
27 42 0.95
28 1 0.02
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (27 bp):
GGGTATTTCAGTAATTCTACCCTACAG
Found at i:39110766 original size:22 final size:21
Alignment explanation
Indices: 39110703--39110759 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 21
39110693 AATTTAGCCA
39110703 TTTTTAATTTATTGCATTTTTTTG
1 TTTTTAATTTATT---TTTTTTTG
*
39110727 TTTTTAGTTTAATTTTTTTTTG
1 TTTTTAATTT-ATTTTTTTTTG
39110749 TTTTCTAATTT
1 TTTT-TAATTT
39110760 TTCTTTTGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
22 12 0.41
23 5 0.17
24 9 0.31
25 3 0.10
ACGTcount: A:0.16, C:0.04, G:0.07, T:0.74
Consensus pattern (21 bp):
TTTTTAATTTATTTTTTTTTG
Found at i:39113530 original size:25 final size:25
Alignment explanation
Indices: 39113502--39113580 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
39113492 CTAATGGCCA
39113502 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
39113527 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
39113549 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
39113574 ATGTGAT
1 ATGTGAT
39113581 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:39113553 original size:47 final size:47
Alignment explanation
Indices: 39113486--39113918 Score: 704
Period size: 47 Copynumber: 9.1 Consensus size: 47
39113476 GAAATGATAG
*
39113486 TAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
39113533 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
39113580 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
39113629 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
39113676 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
39113723 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* *
39113772 TAGGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
39113819 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* * * * * * * *
39113868 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
39113915 TAAG
1 TAAG
39113919 TCCCGAAGGG
Statistics
Matches: 363, Mismatches: 17, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
47 232 0.64
49 131 0.36
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:39113659 original size:96 final size:95
Alignment explanation
Indices: 39113486--39113918 Score: 717
Period size: 96 Copynumber: 4.5 Consensus size: 95
39113476 GAAATGATAG
39113486 TAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
39113551 GTGATGAATGTGAAAGTG-TATATATGTGA
66 GTGATGAATGTGAAAGTGATATATATGTGA
*
39113580 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
39113645 ATGTGATGAATGTGAAAGTG-TATATATGTGA
64 ATGTGATGAATGTGAAAGTGATATATATGTGA
*
39113676 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
39113741 GTGATGAATGTGAAAGTGTATATATATGTGA
66 GTGATGAATGTGAAAGTG-ATATATATGTGA
*
39113772 TAGGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
39113837 GTGATGAATGTGGAAGTGTATATATATGTGA
66 GTGATGAATGTGAAAGTG-ATATATATGTGA
* * * * * * *
39113868 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
39113919 TCCCGAAGGG
Statistics
Matches: 325, Mismatches: 10, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
94 82 0.25
96 243 0.75
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (95 bp):
TAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGATATATATGTGA
Found at i:39113744 original size:143 final size:143
Alignment explanation
Indices: 39113486--39113918 Score: 744
Period size: 143 Copynumber: 3.0 Consensus size: 143
39113476 GAAATGATAG
39113486 TAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
39113551 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
39113616 TATATATATGTGA
131 TATATATATGTGA
*
39113629 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
39113694 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
39113759 TATATATATGTGA
131 TATATATATGTGA
*
39113772 TAGGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* * * * * * * *
39113837 GTGATGAATGTGGAAGTGTATATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAG
66 GTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
39113902 TGTATA-A-ATGTGA
129 TGTATATATATGTGA
39113915 TAAG
1 TAAG
39113919 TCCCGAAGGG
Statistics
Matches: 276, Mismatches: 12, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
143 231 0.84
144 1 0.00
145 44 0.16
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (143 bp):
TAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
TATATATATGTGA
Found at i:39114093 original size:37 final size:37
Alignment explanation
Indices: 39114037--39114115 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
39114027 CCGAGCTCTA
* * *
39114037 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
39114074 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
39114111 AAGAC
1 AAGAC
39114116 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:39116030 original size:43 final size:43
Alignment explanation
Indices: 39115982--39116084 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
39115972 TTGGTTTTCA
39115982 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
*
39116025 GCACTAAGTGTGCGGGCAATTAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
39116068 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
39116085 TTGAAATGCA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.21, C:0.16, G:0.36, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:39116099 original size:29 final size:29
Alignment explanation
Indices: 39116066--39116139 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
39116056 GTTGTGAGAT
* *
39116066 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
39116095 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
39116124 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
39116140 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:39116557 original size:39 final size:40
Alignment explanation
Indices: 39116450--39116592 Score: 130
Period size: 40 Copynumber: 3.6 Consensus size: 40
39116440 TGAATGATGT
* * * * * *
39116450 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGC-GAGTTACTAAAA
* * * **
39116490 CCGGACTAAGAT-CCGAAGCCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTGGTGCGAGTTACTAAAA
*
39116530 TCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAAA
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAAA
39116569 CCGGGCTAAGTCCCGAAGAGCATT
1 CCGGGCTAAGTCCCGAAG-GCATT
39116593 CATGCTAGTG
Statistics
Matches: 84, Mismatches: 14, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
39 33 0.39
40 38 0.45
41 13 0.15
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAAA
Found at i:39116614 original size:40 final size:40
Alignment explanation
Indices: 39116569--39116723 Score: 157
Period size: 40 Copynumber: 3.9 Consensus size: 40
39116559 GTTACTAAAA
*
39116569 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTTT
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
* * * *
39116609 TCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGAGGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
** * * * * * *
39116649 CCGAACTAAGTTCTGAAGAGCATTCGTGCTGGTGTTATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
* * * *
39116689 CCGGGCTAGGTCCTGAAGAGCAATCATGCTGGTGA
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
39116724 CGTGTATTCG
Statistics
Matches: 95, Mismatches: 20, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 95 1.00
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
Found at i:39119530 original size:47 final size:47
Alignment explanation
Indices: 39119471--39119905 Score: 690
Period size: 47 Copynumber: 9.1 Consensus size: 47
39119461 GAAATGATAG
*
39119471 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
39119518 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
39119565 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
39119614 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
39119661 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA--TGTGA
*
39119710 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
39119759 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
39119806 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* * * * * * * *
39119855 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
39119902 TAAG
1 TAAG
39119906 TCCCGAAGGG
Statistics
Matches: 365, Mismatches: 15, Indels: 16
0.92 0.04 0.04
Matches are distributed among these distances:
47 192 0.53
49 167 0.46
51 6 0.02
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:39119608 original size:49 final size:49
Alignment explanation
Indices: 39119471--39119905 Score: 692
Period size: 49 Copynumber: 9.1 Consensus size: 49
39119461 GAAATGATAG
*
39119471 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
39119518 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
39119565 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
39119614 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
39119661 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
39119710 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
39119759 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
39119806 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* * * * * * *
39119855 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
39119902 TAAG
1 TAAG
39119906 TCCCGAAGGG
Statistics
Matches: 366, Mismatches: 16, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
47 182 0.50
48 1 0.00
49 183 0.50
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (49 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
Found at i:39119644 original size:96 final size:97
Alignment explanation
Indices: 39119471--39119905 Score: 688
Period size: 96 Copynumber: 4.5 Consensus size: 97
39119461 GAAATGATAG
*
39119471 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATGTGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
39119534 ATGTGATGAATGTGAAAGTG-TATATATGTGA
66 ATGTGATGAATGTGAAAGTGATATATATGTGA
39119565 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
39119630 ATGTGATGAATGTGAAAGTG-TATATATGTGA
66 ATGTGATGAATGTGAAAGTGATATATATGTGA
* *
39119661 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
39119726 ATGTGATGAATGTGAAAGTGTATATATATGTGA
66 ATGTGATGAATGTGAAAGTG-ATATATATGTGA
*
39119759 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
39119822 ATGTGATGAATGTGGAAGTGTATATATATGTGA
66 ATGTGATGAATGTGAAAGTG-ATATATATGTGA
* * * * * * *
39119855 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
39119906 TCCCGAAGGG
Statistics
Matches: 322, Mismatches: 13, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
94 36 0.11
96 237 0.74
97 1 0.00
98 48 0.15
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (97 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
ATGTGATGAATGTGAAAGTGATATATATGTGA
Found at i:39120080 original size:37 final size:37
Alignment explanation
Indices: 39120024--39120102 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
39120014 CCGAGCTCTA
* * *
39120024 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
39120061 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
39120098 AAGAC
1 AAGAC
39120103 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:39124300 original size:3 final size:3
Alignment explanation
Indices: 39124278--39124339 Score: 65
Period size: 3 Copynumber: 20.7 Consensus size: 3
39124268 TTTTATTTAG
* * *
39124278 TTA TTA ATA TTA TTA CTA TTA TTA TTA TTA TTA TTA TGA TTA TTTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA
39124324 TT- TCT- TTA TTA TTA TT
1 TTA T-TA TTA TTA TTA TT
39124340 TTCTTTTTAT
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
2 2 0.04
3 45 0.90
4 3 0.06
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:39124340 original size:18 final size:17
Alignment explanation
Indices: 39124278--39124350 Score: 57
Period size: 18 Copynumber: 4.5 Consensus size: 17
39124268 TTTTATTTAG
* *
39124278 TTATTAATATTATTACT
1 TTATTATTATTATTTCT
*
39124295 ATTATTATTATTA-TT-A
1 -TTATTATTATTATTTCT
*
39124311 TTATGATTATTTATTTCT
1 TTATTATTA-TTATTTCT
39124329 TTATTATTA-T-TTTCT
1 TTATTATTATTATTTCT
39124344 TT-TTATT
1 TTATTATT
39124351 GGTTTTACTA
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
14 5 0.11
15 15 0.33
16 4 0.09
17 3 0.07
18 19 0.41
ACGTcount: A:0.27, C:0.04, G:0.01, T:0.67
Consensus pattern (17 bp):
TTATTATTATTATTTCT
Found at i:39124356 original size:15 final size:15
Alignment explanation
Indices: 39124296--39124350 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
39124286 ATTATTACTA
*
39124296 TTATTATTATTATTAT
1 TTATTATTATT-TTCT
39124312 TATGATTATT-TATTTCT
1 T-T-ATTATTAT-TTTCT
39124329 TTATTATTATTTTCT
1 TTATTATTATTTTCT
39124344 TT-TTATT
1 TTATTATT
39124351 GGTTTTACTA
Statistics
Matches: 34, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
14 5 0.15
15 13 0.38
16 3 0.09
17 6 0.18
18 7 0.21
ACGTcount: A:0.24, C:0.04, G:0.02, T:0.71
Consensus pattern (15 bp):
TTATTATTATTTTCT
Found at i:39129147 original size:51 final size:52
Alignment explanation
Indices: 39129032--39129208 Score: 215
Period size: 51 Copynumber: 3.5 Consensus size: 52
39129022 ACTAGTGACT
* * *
39129032 CAAGTATGGTACTATGTGAAGGCCACTTTG-GAA-AGAGATAGC-TTGGTAA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
*
39129081 CAAGTGTGGCACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
* * *
39129133 CAAGTGT-GTACTATGTAAAGGCCACTTTGTGAAG-AAGGTAGCTTT-GACTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTC-A
*
39129183 CAAAG-GTGGTACTATGTGCAGGCCAC
1 C-AAGTGTGGTACTATGTGAAGGCCAC
39129209 CAGGTATCCA
Statistics
Matches: 112, Mismatches: 10, Indels: 10
0.85 0.08 0.08
Matches are distributed among these distances:
49 30 0.27
50 17 0.15
51 52 0.46
52 13 0.12
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (52 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
Found at i:39139469 original size:24 final size:24
Alignment explanation
Indices: 39139436--39139481 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
39139426 AGGAAGGATG
* *
39139436 AAGATGAAAAATAATACTATTTTT
1 AAGATAAAAAAGAATACTATTTTT
*
39139460 AAGATAAAAAAGAATATTATTT
1 AAGATAAAAAAGAATACTATTT
39139482 ATCCAATATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.54, C:0.02, G:0.09, T:0.35
Consensus pattern (24 bp):
AAGATAAAAAAGAATACTATTTTT
Found at i:39139764 original size:32 final size:32
Alignment explanation
Indices: 39139728--39139792 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
39139718 AATATAAAGT
39139728 ATGAAATATAATGCAGTTTTTCATTTTTTAGG
1 ATGAAATATAATGCAGTTTTTCATTTTTTAGG
*
39139760 ATGAAATATAATGTAGTTTTTCATTTTTTAGG
1 ATGAAATATAATGCAGTTTTTCATTTTTTAGG
39139792 A
1 A
39139793 CTAATTTATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.32, C:0.05, G:0.15, T:0.48
Consensus pattern (32 bp):
ATGAAATATAATGCAGTTTTTCATTTTTTAGG
Found at i:39140274 original size:22 final size:22
Alignment explanation
Indices: 39140233--39140274 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
39140223 TTATATATTA
* **
39140233 TGCTTTATATAAAATTATTAAT
1 TGCTGTATATAAAAGAATTAAT
39140255 TGCTGTATATAAAAGAATTA
1 TGCTGTATATAAAAGAATTA
39140275 CCCGCTATCC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.43, C:0.05, G:0.10, T:0.43
Consensus pattern (22 bp):
TGCTGTATATAAAAGAATTAAT
Found at i:39141530 original size:27 final size:27
Alignment explanation
Indices: 39141469--39141556 Score: 74
Period size: 27 Copynumber: 3.2 Consensus size: 27
39141459 ATAATAGATG
*
39141469 ATAAAATAGT-AATAATAATGAATGCATAA
1 ATAAAA-AGTAAATAATAATGAAAG-A-AA
39141498 AT-AAAA-TAAATAATCAATGAAAGAAA
1 ATAAAAAGTAAATAAT-AATGAAAGAAA
* * *
39141524 ATAAAAAGTTAAGAAAAATGAAAGAATA
1 ATAAAAAGTAAATAATAATGAAAGAA-A
39141552 ATAAA
1 ATAAA
39141557 TAAATGAATA
Statistics
Matches: 50, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
26 5 0.10
27 22 0.44
28 21 0.42
29 2 0.04
ACGTcount: A:0.66, C:0.02, G:0.10, T:0.22
Consensus pattern (27 bp):
ATAAAAAGTAAATAATAATGAAAGAAA
Found at i:39141641 original size:39 final size:39
Alignment explanation
Indices: 39141574--39141681 Score: 110
Period size: 39 Copynumber: 2.7 Consensus size: 39
39141564 ATACAAGGAT
* * *
39141574 TAAAAAAAAAAGTAAATAAATAAACAAATGAACAATATA
1 TAAAAAAATAAGTAAATAAACAAACAAATGAACAAAATA
* * * *
39141613 TAAATAAATAAGTAAATGAACAAGCAAATGAATAAAATA
1 TAAAAAAATAAGTAAATAAACAAACAAATGAACAAAATA
*
39141652 -AAAGAAATAATGAATAAATAAACAAACAAA
1 TAAAAAAATAA-G--TAAATAAACAAACAAA
39141682 CAAATGAATG
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
38 9 0.16
39 33 0.59
41 14 0.25
ACGTcount: A:0.69, C:0.06, G:0.07, T:0.18
Consensus pattern (39 bp):
TAAAAAAATAAGTAAATAAACAAACAAATGAACAAAATA
Found at i:39142457 original size:4 final size:4
Alignment explanation
Indices: 39142448--39142476 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
39142438 AAAAACAAGT
39142448 AATA AATA AATA AATA AATA AATA AATA A
1 AATA AATA AATA AATA AATA AATA AATA A
39142477 GATATCAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AATA
Found at i:39149032 original size:21 final size:21
Alignment explanation
Indices: 39149002--39149041 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
39148992 GTGTCCCCTA
*
39149002 TTTTGAGAAAATTTTTTAAAG
1 TTTTGAGAAAATTTCTTAAAG
* *
39149023 TTTTGTGAAAGTTTCTTAA
1 TTTTGAGAAAATTTCTTAA
39149042 GTTATCGATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.33, C:0.03, G:0.15, T:0.50
Consensus pattern (21 bp):
TTTTGAGAAAATTTCTTAAAG
Found at i:39158605 original size:20 final size:20
Alignment explanation
Indices: 39158577--39158625 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
39158567 TATCGATCCA
* * *
39158577 GTATTGATACGTTTCTTAAG
1 GTATCGATACATTTCCTAAG
*
39158597 GTATCGATATATTTCCTAAG
1 GTATCGATACATTTCCTAAG
39158617 GTATCGATA
1 GTATCGATA
39158626 TTTTTACTCC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.29, C:0.12, G:0.18, T:0.41
Consensus pattern (20 bp):
GTATCGATACATTTCCTAAG
Found at i:39158626 original size:20 final size:20
Alignment explanation
Indices: 39158588--39158626 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
39158578 TATTGATACG
*
39158588 TTTCTTAAGGTATCGATATA
1 TTTCCTAAGGTATCGATATA
39158608 TTTCCTAAGGTATCGATAT
1 TTTCCTAAGGTATCGATAT
39158627 TTTTACTCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.13, G:0.15, T:0.44
Consensus pattern (20 bp):
TTTCCTAAGGTATCGATATA
Found at i:39158978 original size:20 final size:20
Alignment explanation
Indices: 39158955--39159004 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
39158945 CTTGTAAAGA
*
39158955 TTGTTTCTTTCTTTGCTTAT
1 TTGTTTCTTTCTTTGCTTAC
*
39158975 TTGTTTCTTTCTTTGTTTAC
1 TTGTTTCTTTCTTTGCTTAC
39158995 TTGTTTCTTT
1 TTGTTTCTTT
39159005 TTGAGAGAGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.04, C:0.14, G:0.10, T:0.72
Consensus pattern (20 bp):
TTGTTTCTTTCTTTGCTTAC
Found at i:39163916 original size:48 final size:47
Alignment explanation
Indices: 39163803--39163974 Score: 154
Period size: 48 Copynumber: 3.6 Consensus size: 47
39163793 GGTATAATGC
* * * * * *
39163803 CGACGCCATGTTCTAGACGTGGTCTTACATTGGCTCATCCATCAAGT
1 CGACGCCATGTCCTAGACATGGTCTTACAATGACTCATCAATCAAGG
* *
39163850 CGATGCCATGTCATAGACATGGTCTTACAATGACT-ATCAAAATCAAGG
1 CGACGCCATGTCCTAGACATGGTCTTACAATGACTCATC--AATCAAGG
* * *
39163898 CGACGCCATGTCCCAGACATGGTCTTACACT-AGCTCA-CATATC-CGTG
1 CGACGCCATGTCCTAGACATGGTCTTACAATGA-CTCATCA-ATCAAG-G
*
39163945 TCGATGCCATGTCCTAGACATGGTCTTACA
1 -CGACGCCATGTCCTAGACATGGTCTTACA
39163975 CTAGCTCTCA
Statistics
Matches: 103, Mismatches: 15, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
46 5 0.05
47 34 0.33
48 63 0.61
49 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (47 bp):
CGACGCCATGTCCTAGACATGGTCTTACAATGACTCATCAATCAAGG
Found at i:39163999 original size:48 final size:48
Alignment explanation
Indices: 39163902--39164025 Score: 159
Period size: 48 Copynumber: 2.6 Consensus size: 48
39163892 TCAAGGCGAC
*
39163902 GCCATGTCCCAGACATGGTCTTACACTAGCTCACAT-ATCCGT-G-TCGAT
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAT--GTAGCT-GAT
*
39163950 GCCATGTCCTAGACATGGTCTTACACTAGCTCTCATAATGTAGCTGAT
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTAGCTGAT
*
39163998 G-CATGTCCCAAACAT-GTCTTACACTAGC
1 GCCATGTCCCAGACATGGTCTTACACTAGC
39164026 ACACAAATAA
Statistics
Matches: 69, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
46 13 0.19
47 14 0.20
48 39 0.57
49 3 0.04
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (48 bp):
GCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTAGCTGAT
Found at i:39166039 original size:51 final size:51
Alignment explanation
Indices: 39165970--39166232 Score: 265
Period size: 51 Copynumber: 5.3 Consensus size: 51
39165960 AGTGCTAGTG
* *
39165970 CACATATAGAACTTTACATAATTAGTATGCACATACTTTGCATAAACAATT
1 CACACATAGAACTTTACATAATTAGTACGCACATACTTTGCATAAACAATT
* * * * *
39166021 TACAGATAAAACTTTACATAATTAGTACGCACATACGTTGCATAAATAATT
1 CACACATAGAACTTTACATAATTAGTACGCACATACTTTGCATAAACAATT
* **
39166072 -ACACATAGAACTTCACATAACCAGTACAG-ACATACTTTG--T-----ATT
1 CACACATAGAACTTTACATAATTAGTAC-GCACATACTTTGCATAAACAATT
* * * * *
39166115 CACATATAGAACGTCACATAACTAGTACGCACATACTTTGCATAGACAATT
1 CACACATAGAACTTTACATAATTAGTACGCACATACTTTGCATAAACAATT
* * * * *
39166166 CAAACATAGAACTTTACATAATCAGTACGCACATACTTTGTATAGACAGTT
1 CACACATAGAACTTTACATAATTAGTACGCACATACTTTGCATAAACAATT
*
39166217 CACACAGAGAACTTTA
1 CACACATAGAACTTTA
39166233 TGTAATCAGT
Statistics
Matches: 177, Mismatches: 25, Indels: 20
0.80 0.11 0.09
Matches are distributed among these distances:
43 4 0.02
44 34 0.19
46 1 0.01
48 1 0.01
50 31 0.18
51 106 0.60
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.29
Consensus pattern (51 bp):
CACACATAGAACTTTACATAATTAGTACGCACATACTTTGCATAAACAATT
Found at i:39166200 original size:95 final size:94
Alignment explanation
Indices: 39166036--39166208 Score: 258
Period size: 95 Copynumber: 1.8 Consensus size: 94
39166026 ATAAAACTTT
* * *
39166036 ACATAATTAGTACGCACATACGTTGCATAAATAATTACACATAGAACTTCACATAACCAGTACAG
1 ACATAACTAGTACGCACATACGTTGCATAAACAATTAAACATAGAACTTCACATAACCAGTACAG
39166101 ACATACTTTGTATTCACATATAGAACGTC
66 ACATACTTTGTATTCACATATAGAACGTC
* * * *
39166130 ACATAACTAGTACGCACATACTTTGCATAGACAATTCAAACATAGAACTTTACATAATCAGTAC-
1 ACATAACTAGTACGCACATACGTTGCATAAACAATT-AAACATAGAACTTCACATAACCAGTACA
39166194 GCACATACTTTGTAT
65 G-ACATACTTTGTAT
39166209 AGACAGTTCA
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
94 33 0.47
95 37 0.53
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.28
Consensus pattern (94 bp):
ACATAACTAGTACGCACATACGTTGCATAAACAATTAAACATAGAACTTCACATAACCAGTACAG
ACATACTTTGTATTCACATATAGAACGTC
Found at i:39167612 original size:32 final size:32
Alignment explanation
Indices: 39167569--39167629 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
39167559 CAAATGGTAC
*
39167569 AACTTGAAAAGGTTATGTACACTTTGTGTGTA
1 AACTTGAAAAGGTTAGGTACACTTTGTGTGTA
* *
39167601 AACTTGGAAAGGTTAGGTATACTTTGTGT
1 AACTTGAAAAGGTTAGGTACACTTTGTGT
39167630 ATACCATATG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.30, C:0.08, G:0.25, T:0.38
Consensus pattern (32 bp):
AACTTGAAAAGGTTAGGTACACTTTGTGTGTA
Done.