Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 128 of 356
Found at i:40864909 original size:55 final size:55
Alignment explanation
Indices: 40864848--40865024 Score: 246
Period size: 55 Copynumber: 3.2 Consensus size: 55
40864838 ATATTAAGTC
* * *
40864848 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* *
40864903 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * * *
40864958 CGCACACTTAGTGCTACATATTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAA-TCAAACT
40865014 CGCACACTTAG
1 CGCACACTTAG
40865025 CGCCAATCTC
Statistics
Matches: 109, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
55 93 0.85
56 16 0.15
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:40864912 original size:28 final size:27
Alignment explanation
Indices: 40864848--40864999 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
40864838 ATATTAAGTC
* *
40864848 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
40864875 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*
40864903 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
40864930 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
40864958 CGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
40864985 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
40865000 GCACAATTTA
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:40872418 original size:13 final size:14
Alignment explanation
Indices: 40872392--40872424 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
40872382 ATAAAATATA
40872392 AATTTATATTTAAT
1 AATTTATATTTAAT
40872406 AATTTAT-TTTAAT
1 AATTTATATTTAAT
40872419 ATATTT
1 A-ATTT
40872425 CATTAATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (14 bp):
AATTTATATTTAAT
Found at i:40875875 original size:96 final size:96
Alignment explanation
Indices: 40875711--40875998 Score: 382
Period size: 96 Copynumber: 3.0 Consensus size: 96
40875701 AAACATTTGG
* * *
40875711 TTGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAGT
1 TTGATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCACATTATGAAAGCCAGT
*
40875776 GTAATACCATGTTTGGGACATGGCATCAGCA
66 GTAAGACCATGTTTGGGACATGGCATCAGCA
* *
40875807 TTGATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCACATTCTGAAAGCTAGT
1 TTGATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCACATTATGAAAGCCAGT
*
40875872 GTAAGACCATGTTTGGGATATGGCATCAGCA
66 GTAAGACCATGTTTGGGACATGGCATCAGCA
* * * * * ** * *
40875903 TTTATATGCGAGCTAGTGTAAGACCATGTTTGGAACATGGCATTGG-CATTGTTAT-ATATGTCA
1 TTGATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCA-CATTATGA-AAGCCA
* *
40875966 GTGTAAGACCATGTCTGGGACATGGAATCAGCA
64 GTGTAAGACCATGTTTGGGACATGGCATCAGCA
40875999 CCGATGTATG
Statistics
Matches: 169, Mismatches: 21, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
95 3 0.02
96 166 0.98
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (96 bp):
TTGATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCACATTATGAAAGCCAGT
GTAAGACCATGTTTGGGACATGGCATCAGCA
Found at i:40875952 original size:48 final size:47
Alignment explanation
Indices: 40875725--40875990 Score: 275
Period size: 48 Copynumber: 5.6 Consensus size: 47
40875715 TATGTGTGCC
* ** *
40875725 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGG-CATTTTATGAGAGCT
* * * * *
40875773 AGTGTAATACCATGTTTGGGACATGGCATCAGCATTGATATGTGTGCT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCATT-TTATGAGAGCT
** * *
40875821 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCACATTCTGAAAGCT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGG-CATTTTATGAGAGCT
* * *
40875869 AGTGTAAGACCATGTTTGGGATATGGCATCAGCATTTATATGCGAGCT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCATTT-TATGAGAGCT
* * *
40875917 AGTGTAAGACCATGTTTGGAACATGGCATTGGCATTGTTAT-ATATG-T
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCATT-TTATGAGA-GCT
*
40875964 CAGTGTAAGACCATGTCTGGGACATGG
1 -AGTGTAAGACCATGTTTGGGACATGG
40875991 AATCAGCACC
Statistics
Matches: 179, Mismatches: 33, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
47 7 0.04
48 169 0.94
49 3 0.02
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (47 bp):
AGTGTAAGACCATGTTTGGGACATGGCATCGGCATTTTATGAGAGCT
Found at i:40875985 original size:144 final size:144
Alignment explanation
Indices: 40875725--40875990 Score: 367
Period size: 144 Copynumber: 1.8 Consensus size: 144
40875715 TATGTGTGCC
* *
40875725 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAGTGTAATACCATGTTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATGTTT
* * *
40875790 GGGACATGGCATCAGCATTGATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCC
66 GGAACATGGCATCAGCATTGATATATGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCC
40875855 ACATTCTGAAAGCT
131 ACATTCTGAAAGCT
* * ** * *
40875869 AGTGTAAGACCATGTTTGGGATATGGCATCAG-CATTTATATGCGAGCTAGTGTAAGACCATGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACAT-TATGAGAGCCAGTGTAAGACCATGTT
**
40875933 TGGAACATGGCATTGGCATTGTTATATATGT-C-AGTGTAAGACCATGTCTGGGACATGG
65 TGGAACATGGCATCAGCATTG--ATATATGTGCTAGTGTAAGACCATGTCTGGGACATGG
40875991 AATCAGCACC
Statistics
Matches: 106, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
143 3 0.03
144 95 0.90
145 1 0.01
146 7 0.07
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (144 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATGTTT
GGAACATGGCATCAGCATTGATATATGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCC
ACATTCTGAAAGCT
Found at i:40878728 original size:3 final size:3
Alignment explanation
Indices: 40878720--40878839 Score: 77
Period size: 3 Copynumber: 38.7 Consensus size: 3
40878710 TATTTATTTC
* *
40878720 TAT TAT TAT TA- TAT ATAT AAAT TAT TAT TAT TAT TAT TATT TAT TTT
1 TAT TAT TAT TAT TAT -TAT -TAT TAT TAT TAT TAT TAT TA-T TAT TAT
* ** * *
40878767 TAA CCT TAT TTT TA- TAT TAT ATAT AAT TAT T-T TAT TAT ATAT TACT
1 TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT -TAT TA-T
40878813 TA- TAT TAT TAT TATT TAT TAT ATAT TA
1 TAT TAT TAT TAT TA-T TAT TAT -TAT TA
40878840 CTTTTCACAA
Statistics
Matches: 92, Mismatches: 14, Indels: 22
0.72 0.11 0.17
Matches are distributed among these distances:
2 8 0.09
3 60 0.65
4 24 0.26
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:40878733 original size:25 final size:25
Alignment explanation
Indices: 40878705--40878837 Score: 103
Period size: 25 Copynumber: 5.2 Consensus size: 25
40878695 AAATCTAACC
40878705 ATATATATTTATT-TCTATTATTATT
1 ATATATATTTATTAT-TATTATTATT
**
40878730 ATATATATAAATTATTATTATTATT
1 ATATATATTTATTATTATTATTATT
* *** *
40878755 ATTATTTATTT-TTAACCTTATTTTT
1 A-TATATATTTATTATTATTATTATT
* *
40878780 ATAT-TATATATAATTATT-TTATT
1 ATATATATTTATTATTATTATTATT
40878803 ATATATTACTTATATTATTATTATTTATT
1 ATATA-TA-TT-TATTATTATTA-TTATT
40878832 ATATAT
1 ATATAT
40878838 TACTTTTCAC
Statistics
Matches: 82, Mismatches: 17, Indels: 15
0.72 0.15 0.13
Matches are distributed among these distances:
23 12 0.15
24 7 0.09
25 35 0.43
26 8 0.10
27 9 0.11
28 1 0.01
29 10 0.12
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (25 bp):
ATATATATTTATTATTATTATTATT
Found at i:40878815 original size:29 final size:29
Alignment explanation
Indices: 40878783--40878842 Score: 95
Period size: 29 Copynumber: 2.1 Consensus size: 29
40878773 TATTTTTATA
40878783 TTATA-TATAATTATTTTATTATATATTAC
1 TTATATTATAATTA-TTTATTATATATTAC
*
40878812 TTATATTATTATTATTTATTATATATTAC
1 TTATATTATAATTATTTATTATATATTAC
40878841 TT
1 TT
40878843 TTCACAAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 22 0.76
30 7 0.24
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (29 bp):
TTATATTATAATTATTTATTATATATTAC
Found at i:40878923 original size:11 final size:12
Alignment explanation
Indices: 40878868--40878942 Score: 59
Period size: 11 Copynumber: 6.1 Consensus size: 12
40878858 TATTTTACAT
40878868 TATTATTTATATA
1 TATTATTTAT-TA
40878881 TCATTATTATATT-
1 T-ATTATT-TATTA
40878894 T-TTACTTGTATTA
1 TATTA-TT-TATTA
40878907 TA-TATTTATTA
1 TATTATTTATTA
40878918 -ATTATTTATATA
1 TATTATTTAT-TA
*
40878930 TATTATATATTA
1 TATTATTTATTA
40878942 T
1 T
40878943 TTTTACATAT
Statistics
Matches: 52, Mismatches: 2, Indels: 17
0.73 0.03 0.24
Matches are distributed among these distances:
10 1 0.02
11 15 0.29
12 13 0.25
13 13 0.25
14 7 0.13
15 3 0.06
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (12 bp):
TATTATTTATTA
Found at i:40879021 original size:26 final size:28
Alignment explanation
Indices: 40878983--40879035 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 28
40878973 ATAATTATTT
*
40878983 TATATTATGTTATTTTTATACTATTATA
1 TATATTATGTTATTTATATACTATTATA
*
40879011 TATATT-T-TTATTTATATATTATTAT
1 TATATTATGTTATTTATATACTATTAT
40879036 CATTAAAGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 16 0.70
27 1 0.04
28 6 0.26
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (28 bp):
TATATTATGTTATTTATATACTATTATA
Found at i:40879306 original size:18 final size:19
Alignment explanation
Indices: 40879285--40879331 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
40879275 TTTAAAACCA
40879285 ATATATTTTTTATT-TTAT
1 ATATATTTTTTATTCTTAT
* * *
40879303 ATATAATTATTATTCTTTT
1 ATATATTTTTTATTCTTAT
*
40879322 ATAAATTTTT
1 ATATATTTTT
40879332 GTTATTATAT
Statistics
Matches: 22, Mismatches: 6, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
18 12 0.55
19 10 0.45
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (19 bp):
ATATATTTTTTATTCTTAT
Found at i:40881901 original size:46 final size:45
Alignment explanation
Indices: 40881770--40881983 Score: 152
Period size: 46 Copynumber: 4.6 Consensus size: 45
40881760 GTCAGGTGCT
* ** *
40881770 GATGCCATGTCCCAGACATGGTCTTACACTAACACA-TCTCATA-GCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGACTTAGTCTCA-AGGCC
* *
40881816 GATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGACTTA-GTCTCAAGGCC
* * * * *
40881862 GATGCATGTCCCAAAAATGTCTTACATTAGCACTT-GTCTCAATGCT
1 GATGCATGTCCCAGACATGTCTTACACT-G-ACTTAGTCTCAAGGCC
* * *
40881908 GATGCCATGTCCCAGACATGGTCTTACACTGGC-T-CTCAT-AATGTGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGACTTAGTC-TCAA---GGCC
40881956 GATGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
40881984 AGCTCACACA
Statistics
Matches: 138, Mismatches: 19, Indels: 22
0.77 0.11 0.12
Matches are distributed among these distances:
44 12 0.09
45 20 0.14
46 59 0.43
47 28 0.20
48 19 0.14
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGACTTAGTCTCAAGGCC
Found at i:40881960 original size:94 final size:92
Alignment explanation
Indices: 40881770--40881986 Score: 237
Period size: 94 Copynumber: 2.3 Consensus size: 92
40881760 GTCAGGTGCT
* * * *
40881770 GATGCCATGTCCCAGACATGGTCTTACACTAACAC--ATCTC-ATAGCTGATGCATGTCCCAGAC
1 GATG-CATGTCCCAAAAAT-GTCTTACACTAGCACTTGTCTCAAT-GCTGATGCATGTCCCAGAC
* *
40881832 ATGTCTTACACTGGCTTACGTCTCGAGGCC
63 ATGTCTTACACTGGCTTACATATCGAGGCC
*
40881862 GATGCATGTCCCAAAAATGTCTTACATTAGCACTTGTCTCAATGCTGATGCCATGTCCCAGACAT
1 GATGCATGTCCCAAAAATGTCTTACACTAGCACTTGTCTCAATGCTGATG-CATGTCCCAGACAT
* *
40881927 GGTCTTACACTGGCTCT-CATAAT-GTGGCT
65 -GTCTTACACTGGCT-TACAT-ATCGAGGCC
* *
40881956 GATGCATGTCCCAGACATGTCTTACACTAGC
1 GATGCATGTCCCAAAAATGTCTTACACTAGC
40881987 TCACACAAGT
Statistics
Matches: 106, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
90 13 0.12
91 12 0.11
92 15 0.14
93 16 0.15
94 48 0.45
95 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (92 bp):
GATGCATGTCCCAAAAATGTCTTACACTAGCACTTGTCTCAATGCTGATGCATGTCCCAGACATG
TCTTACACTGGCTTACATATCGAGGCC
Found at i:40883436 original size:28 final size:28
Alignment explanation
Indices: 40883382--40883437 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
40883372 CCATAATAGT
* **
40883382 ACAGTCTGGGCCTAAGCCCTAGGCAGTA
1 ACAGTCTGGGCCTAAGCCCAAAACAGTA
* *
40883410 ACAGTGTGGGCCTATGCCCAAAACAGTA
1 ACAGTCTGGGCCTAAGCCCAAAACAGTA
40883438 CAATCACAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.27, T:0.18
Consensus pattern (28 bp):
ACAGTCTGGGCCTAAGCCCAAAACAGTA
Found at i:40891550 original size:46 final size:47
Alignment explanation
Indices: 40891401--40891574 Score: 187
Period size: 46 Copynumber: 3.7 Consensus size: 47
40891391 TCACTTGTGT
* * * *
40891401 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATTA--TAA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GACGT-A
* * *
40891447 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACG-A
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGTA
* * *
40891495 GTGCTAGTGTCAGACATGTCTGGGACATGCATCGGCCTCGAGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTA
40891542 -AGCCAGTGTAAGACATGTCTGGGACATGCATCG
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCG
40891575 TCTAAACGTT
Statistics
Matches: 106, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
46 57 0.54
47 29 0.27
48 19 0.18
49 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (47 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTA
Found at i:40901888 original size:25 final size:25
Alignment explanation
Indices: 40901860--40901929 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
40901850 CTCTTTTAAT
40901860 AACTGGGGCAAAGCCCTTTTCGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
40901885 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
40901910 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
40901930 AGCACTTCCT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:40902162 original size:27 final size:27
Alignment explanation
Indices: 40902132--40902373 Score: 274
Period size: 27 Copynumber: 9.0 Consensus size: 27
40902122 GGGGCAAAAT
* * *
40902132 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
40902159 GGTAATTCTACCCTAC-AGGCGTATTTC
1 GGTAATTCTACCCTACAAGG-GTATTTC
* *
40902186 AGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
40902213 GATAATTCTACCTTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
40902240 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
40902267 GGTAATTCTACCCTAC-AGGGTTATTTC
1 GGTAATTCTACCCTACAAGGG-TATTTC
* *
40902294 AGTAATTCTACCCTACAAGGGCATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
40902321 GGTAATTTTACCCTA-GAGGCATATTTC
1 GGTAATTCTACCCTACAAGG-GTATTTC
* *
40902348 GGTAATTCTATCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAAGGGTATTT
40902374 TGATATTTTA
Statistics
Matches: 180, Mismatches: 29, Indels: 12
0.81 0.13 0.05
Matches are distributed among these distances:
26 9 0.05
27 162 0.90
28 9 0.05
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:40902198 original size:54 final size:53
Alignment explanation
Indices: 40902133--40902373 Score: 302
Period size: 54 Copynumber: 4.5 Consensus size: 53
40902123 GGGCAAAATG
* * *
40902133 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGCGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGG-GTATTTCA
* * * *
40902187 GTATTTCTACCCTACAAGGGTATTTCGATAATTCTACCTTATAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTA-CAGGGTATTTCA
* *
40902241 GTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTACAGGGTTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGG-TATTTCA
* * * * *
40902295 GTAATTCTACCCTACAAGGGCATTTCGGTAATTTTACCCTAGAGGCATATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGG-GTATTTCA
* *
40902349 GTAATTCTATCCTACAGGGGTATTT
1 GTAATTCTACCCTACAAGGGTATTT
40902374 TGATATTTTA
Statistics
Matches: 161, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
53 4 0.02
54 154 0.96
55 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (53 bp):
GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGTATTTCA
Found at i:40902276 original size:81 final size:81
Alignment explanation
Indices: 40902134--40902378 Score: 305
Period size: 81 Copynumber: 3.0 Consensus size: 81
40902124 GGCAAAATGG
* * * * *
40902134 TAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGCGTATTTCAGTATTTCTACCC
1 TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGCGTATTTCGGTAATTCTACCC
40902199 TACAAGGGTATTTCGA
66 TACAAGGGTATTTCGA
* * * * *
40902215 TAATTCTACCTTATAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCC
1 TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGCGTATTTCGGTAATTCTACCC
40902280 TAC-AGGGTTATTTC-A
66 TACAAGGG-TATTTCGA
* * * * *
40902295 GTAATTCTACCCTACAAGGGCATTTCGGTAATTTTACCCTAGAGGCATATTTCGGTAATTCTATC
1 -TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGCGTATTTCGGTAATTCTACC
* *
40902360 CTACAGGGGTATTTTGA
65 CTACAAGGGTATTTCGA
40902377 TA
1 TA
40902379 TTTTACAACT
Statistics
Matches: 139, Mismatches: 21, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
80 5 0.04
81 130 0.94
82 4 0.03
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (81 bp):
TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGCGTATTTCGGTAATTCTACCC
TACAAGGGTATTTCGA
Found at i:40902449 original size:27 final size:26
Alignment explanation
Indices: 40902366--40902544 Score: 137
Period size: 27 Copynumber: 6.7 Consensus size: 26
40902356 TATCCTACAG
* *
40902366 GGGTATTTTGAT-ATTTTACAACTCGA
1 GGGTATTTTGGTAATTTTACAAC-CAA
* * * * * *
40902392 GAGTATTTTGATAATTTCAGAAATCAG
1 GGGTATTTTGGTAATTTTA-CAACCAA
*
40902419 GGGTATTTTGGTATTTTTACAAGCCAA
1 GGGTATTTTGGTAATTTTACAA-CCAA
* * *
40902446 GGGTATTTCGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTAC-AACCAA
***
40902473 GGGTATTTTGGTAATTTTACTAATTGA
1 GGGTATTTTGGTAATTTTAC-AACCAA
40902500 GGGTATTTTGGTAATTTTGTA-AACCAA
1 GGGTATTTTGGTAA-TTT-TACAACCAA
*
40902527 GGGTATTTTAGTAATTTT
1 GGGTATTTTGGTAATTTT
40902545 GTAAATCGAG
Statistics
Matches: 121, Mismatches: 26, Indels: 13
0.76 0.16 0.08
Matches are distributed among these distances:
25 1 0.01
26 16 0.13
27 95 0.79
28 7 0.06
29 2 0.02
ACGTcount: A:0.28, C:0.08, G:0.21, T:0.42
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAACCAA
Found at i:40902488 original size:81 final size:81
Alignment explanation
Indices: 40902394--40902544 Score: 191
Period size: 81 Copynumber: 1.9 Consensus size: 81
40902384 CAACTCGAGA
* *
40902394 GTATTTTGATAATTTCAGAAATCAG-GGGTATTTTGGT-ATTTT-TACAAGCCAAGGGTATTTCG
1 GTATTTTGATAATTTCACAAAT-AGAGGGTATTTTGGTAATTTTGTA-AA-CCAAGGGTATTTCA
40902456 GTAATTTTACAAACTAGGG
63 GTAATTTTACAAACTAGGG
* * * * *
40902475 GTATTTTGGTAATTTTACTAATTGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTA
1 GTATTTTGATAATTTCACAAATAGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTCAGTA
40902540 ATTTT
66 ATTTT
40902545 GTAAATCGAG
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
80 1 0.02
81 50 0.83
82 7 0.12
83 2 0.03
ACGTcount: A:0.28, C:0.07, G:0.21, T:0.43
Consensus pattern (81 bp):
GTATTTTGATAATTTCACAAATAGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTCAGTA
ATTTTACAAACTAGGG
Found at i:40902503 original size:54 final size:54
Alignment explanation
Indices: 40902316--40902558 Score: 174
Period size: 54 Copynumber: 4.5 Consensus size: 54
40902306 CTACAAGGGC
* * * * * **
40902316 ATTTCGGTAATTTTAC-CCTAGAGGCATATTTCGGTAATTCTATCCTAC-AGGGGT
1 ATTTTGGTAATTTTACAACTCGAGG-GTATTTCGGTAATTTTA-CAAACTAGGGGT
* * * * * *
40902370 ATTTTGAT-ATTTTACAACTCGAGAGTATTTTGATAATTTCAGAAA-TCAGGGGT
1 ATTTTGGTAATTTTACAACTCGAGGGTATTTCGGTAATTTTACAAACT-AGGGGT
* *
40902423 ATTTTGGTATTTTTACAAGC-CAAGGGTATTTCGGTAATTTTACAAACTAGGGGT
1 ATTTTGGTAATTTTACAA-CTCGAGGGTATTTCGGTAATTTTACAAACTAGGGGT
* * ** * *
40902477 ATTTTGGTAATTTTACTAA-TTGAGGGTATTTTGGTAATTTTGTAAACCAAGGGT
1 ATTTTGGTAATTTTAC-AACTCGAGGGTATTTCGGTAATTTTACAAACTAGGGGT
* ** *
40902531 ATTTTAGTAATTTTGTAAATCGAGGGTA
1 ATTTTGGTAATTTTACAACTCGAGGGTA
40902559 AAATAGTAAT
Statistics
Matches: 147, Mismatches: 33, Indels: 18
0.74 0.17 0.09
Matches are distributed among these distances:
52 1 0.01
53 34 0.23
54 108 0.73
55 4 0.03
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.40
Consensus pattern (54 bp):
ATTTTGGTAATTTTACAACTCGAGGGTATTTCGGTAATTTTACAAACTAGGGGT
Found at i:40902565 original size:27 final size:27
Alignment explanation
Indices: 40902537--40902809 Score: 321
Period size: 27 Copynumber: 9.7 Consensus size: 27
40902527 GGGTATTTTA
* * *
40902537 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
40902564 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
40902591 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
40902618 GTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAATG
40902645 GTAATTCTATAAATCGAGGGTAAAAGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGT-----A----AA-ATG
*
40902682 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
40902709 ATAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
40902736 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
40902763 GTAATTCTGTAAATCGAAGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
40902790 GTAATTTTACAAATTGAGGG
1 GTAATTCTATAAATCGAGGG
40902810 CATTTCAGTA
Statistics
Matches: 217, Mismatches: 19, Indels: 20
0.85 0.07 0.08
Matches are distributed among these distances:
27 188 0.87
28 2 0.01
32 2 0.01
36 2 0.01
37 23 0.11
ACGTcount: A:0.41, C:0.08, G:0.23, T:0.28
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:40902583 original size:81 final size:81
Alignment explanation
Indices: 40902509--40902775 Score: 275
Period size: 81 Copynumber: 3.2 Consensus size: 81
40902499 AGGGTATTTT
* * *** * * *
40902509 GGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGT
1 GGTAATTCTATAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTAT
40902574 AAATCGAGGGTAAAAC
66 AAATCGAGGGTAAAAC
* * *
40902590 GGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTAT
1 GGTAATTCTATAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTAT
*
40902655 AAATCGAGGGTAAAAGAGGGTAAAAT
66 AAATC----------GAGGGTAAAAC
* * * *
40902681 GGTAATTCTATAAATCGAGGGTAAAA-CGATAATTCTATAAATCGAGGGTAAAATGGTAATTCTA
1 GGTAATTCTATAAACCAAGGGTAAAATAG-TAATTCTATAAATCGAGGGTAAAATAGTAATTCTA
40902745 TAAATCGAGGGTAAAAC
65 TAAATCGAGGGTAAAAC
*
40902762 GGTAATTCTGTAAA
1 GGTAATTCTATAAA
40902776 TCGAAGGTAA
Statistics
Matches: 159, Mismatches: 16, Indels: 22
0.81 0.08 0.11
Matches are distributed among these distances:
81 82 0.52
90 1 0.01
91 76 0.48
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.30
Consensus pattern (81 bp):
GGTAATTCTATAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTAT
AAATCGAGGGTAAAAC
Found at i:40902686 original size:37 final size:37
Alignment explanation
Indices: 40902633--40902706 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
40902623 TCTATAAATC
40902633 GAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAA
1 GAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAA
*
40902670 GAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAA
1 GAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAA
40902707 CGATAATTCT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.45, C:0.05, G:0.26, T:0.24
Consensus pattern (37 bp):
GAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAA
Found at i:40902689 original size:91 final size:91
Alignment explanation
Indices: 40902579--40902760 Score: 328
Period size: 91 Copynumber: 2.0 Consensus size: 91
40902569 TCTGTAAATC
* *
40902579 GAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAAT
1 GAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAAT
40902644 AGTAATTCTATAAATCGAGGGTAAAA
66 AGTAATTCTATAAATCGAGGGTAAAA
*
40902670 GAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAAT
1 GAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAAT
*
40902735 GGTAATTCTATAAATCGAGGGTAAAA
66 AGTAATTCTATAAATCGAGGGTAAAA
40902761 CGGTAATTCT
Statistics
Matches: 87, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
91 87 1.00
ACGTcount: A:0.43, C:0.08, G:0.23, T:0.26
Consensus pattern (91 bp):
GAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAAT
AGTAATTCTATAAATCGAGGGTAAAA
Found at i:40902760 original size:118 final size:118
Alignment explanation
Indices: 40902552--40902787 Score: 409
Period size: 118 Copynumber: 2.0 Consensus size: 118
40902542 TTTGTAAATC
* *
40902552 GAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAT
1 GAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAAT
* *
40902617 GGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAA
66 GGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATAAATCGAAGGTAAAA
*
40902670 GAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAAT
1 GAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAAT
* *
40902735 GGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAAGGTAAAA
66 GGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATAAATCGAAGGTAAAA
40902788 CGGTAATTTT
Statistics
Matches: 111, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
118 111 1.00
ACGTcount: A:0.42, C:0.08, G:0.23, T:0.27
Consensus pattern (118 bp):
GAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAAT
GGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATAAATCGAAGGTAAAA
Found at i:40905047 original size:46 final size:44
Alignment explanation
Indices: 40904990--40905165 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 44
40904980 TCACTTGTGT
*
40904990 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTA-GA
*
40905036 GAGCCAGTGTAAGACCATGTCTGGGACCTGGCATCGG--CATTGAGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCCATT-AGA
* * *
40905081 CGAGTGCTAGTGTAAGACATGTCTGGGACATGCATCAG-CC-TCGAGA
1 -GA--GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCCAT-TAGA
40905127 CGTAAGCCAGTGTAAGACATGTCTGGGACATGCATCGGC
1 -G--AGCCAGTGTAAGACATGTCTGGGACATGCATCGGC
40905166 TAAACGTTGT
Statistics
Matches: 111, Mismatches: 8, Indels: 21
0.79 0.06 0.15
Matches are distributed among these distances:
45 6 0.05
46 59 0.53
47 27 0.24
48 19 0.17
ACGTcount: A:0.26, C:0.22, G:0.31, T:0.22
Consensus pattern (44 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCCATTAGA
Found at i:40905240 original size:50 final size:49
Alignment explanation
Indices: 40905180--40905306 Score: 159
Period size: 50 Copynumber: 2.6 Consensus size: 49
40905170 CGTTGTGTTT
* *
40905180 GTATAAGACCATGTCTGGGATATGGCATC-GACACAGAT-ATGCGAGAGCTA
1 GTATAAGACCATGTCTGGGACATGGCATCAGACAC-GATGATG-G-GAGCCA
* * *
40905230 GTATAAGACCATGTCTGGGACATGGCATCAGCCTCGATGATGGTAGCCA
1 GTATAAGACCATGTCTGGGACATGGCATCAGACACGATGATGGGAGCCA
*
40905279 GTGTAAGACCATGTCTGGGACATGGCAT
1 GTATAAGACCATGTCTGGGACATGGCAT
40905307 AGGCATCTTA
Statistics
Matches: 69, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
49 31 0.45
50 32 0.46
51 6 0.09
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (49 bp):
GTATAAGACCATGTCTGGGACATGGCATCAGACACGATGATGGGAGCCA
Found at i:40915971 original size:47 final size:47
Alignment explanation
Indices: 40915903--40916068 Score: 178
Period size: 47 Copynumber: 3.6 Consensus size: 47
40915893 GCGAATGTCT
* *
40915903 GAACTCGTTGAGTTGAATCCGAGTTCGTGAGATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATAC
* * * * * *
40915950 GAGCTCGTTGACTTGAGTCCGAGTTCACTTATGGATGTGA--A--CATTC
1 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATAC
* * *
40915996 AAACTCGTTGAGTTGAGTCCGAGTTTGTGAAATGTAACTAGGCATAC
1 GAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATAC
40916043 GAACTCGTTGAGTTGAGTCCGAGTTC
1 GAACTCGTTGAGTTGAGTCCGAGTTC
40916069 ACTTATGGAT
Statistics
Matches: 94, Mismatches: 18, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
43 5 0.05
45 3 0.03
46 26 0.28
47 51 0.54
48 3 0.03
50 6 0.06
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (47 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATAC
Found at i:40916012 original size:46 final size:46
Alignment explanation
Indices: 40915853--40916122 Score: 180
Period size: 46 Copynumber: 5.8 Consensus size: 46
40915843 ATATTTGAGT
* * *
40915853 ATTCGAACTCGTTGAGTTGAGTCCTAGTTCATTTATGGATGCG-A-
1 ATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAC
* * * *
40915897 ATGTCTGAACTCGTTGAGTTGAATCCGAGTTC-GTGA--GATGTAACTAGGC
1 AT-TC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGA--A--C
* * *
40915946 ATCCGAGCTCGTTGACTTGAGTCCGAGTTCACTTATGGATGTGAAC
1 ATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAC
* * * *
40915992 ATTCAAACTCGTTGAGTTGAGTCCGAG-T---TTGTGAAATGTAACTAGGC
1 ATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGTGA--A--C
* *
40916039 ATACGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC
1 ATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAC
* * * * * *
40916085 GTCCGATCTCATTGAGTTGAGACCGAGTTCGCTTATGG
1 ATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
40916123 GCGGGTTGCA
Statistics
Matches: 174, Mismatches: 32, Indels: 38
0.71 0.13 0.16
Matches are distributed among these distances:
42 4 0.02
43 9 0.05
44 2 0.01
45 6 0.03
46 82 0.47
47 49 0.28
48 6 0.03
49 2 0.01
50 10 0.06
51 4 0.02
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (46 bp):
ATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAC
Found at i:40916019 original size:93 final size:93
Alignment explanation
Indices: 40915856--40916115 Score: 353
Period size: 93 Copynumber: 2.8 Consensus size: 93
40915846 TTTGAGTATT
* *
40915856 CGAACTCGTTGAGTTGAGTCCTAGTTCATTTATGGATGCG-A-ATGTCTGAACTCGTTGAGTTGA
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACAT-TC-GAACTCGTTGAGTTGA
* * *
40915919 ATCCGAGTTCGTGAGATGTAACTAGGCATC
64 GTCCGAGTTCGTGAAATGTAACTAGGCATA
* * * *
40915949 CGAGCTCGTTGACTTGAGTCCGAGTTCACTTATGGATGTGAACATTCAAACTCGTTGAGTTGAGT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATTCGAACTCGTTGAGTTGAGT
*
40916014 CCGAGTTTGTGAAATGTAACTAGGCATA
66 CCGAGTTCGTGAAATGTAACTAGGCATA
* * * * *
40916042 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGATCTCATTGAGTTGAGA
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATTCGAACTCGTTGAGTTGAGT
40916107 CCGAGTTCG
66 CCGAGTTCG
40916116 CTTATGGGCG
Statistics
Matches: 145, Mismatches: 20, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
93 140 0.97
94 3 0.02
95 2 0.01
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (93 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATTCGAACTCGTTGAGTTGAGT
CCGAGTTCGTGAAATGTAACTAGGCATA
Found at i:40919083 original size:15 final size:15
Alignment explanation
Indices: 40919060--40919119 Score: 66
Period size: 15 Copynumber: 4.0 Consensus size: 15
40919050 GTATCGTATC
*
40919060 TTGGGTTTCTTTATT
1 TTGGATTTCTTTATT
40919075 TTGGATTTCTTTATT
1 TTGGATTTCTTTATT
* * ** *
40919090 CTGGGTTTCTCAATC
1 TTGGATTTCTTTATT
40919105 TTGGATTTCTTTATT
1 TTGGATTTCTTTATT
40919120 CAATTTTCTT
Statistics
Matches: 34, Mismatches: 11, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
15 34 1.00
ACGTcount: A:0.12, C:0.12, G:0.17, T:0.60
Consensus pattern (15 bp):
TTGGATTTCTTTATT
Found at i:40919097 original size:30 final size:30
Alignment explanation
Indices: 40919061--40919120 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
40919051 TATCGTATCT
** *
40919061 TGGGTTTCTTTATTTTGGATTTCTTTATTC
1 TGGGTTTCTCAATCTTGGATTTCTTTATTC
40919091 TGGGTTTCTCAATCTTGGATTTCTTTATTC
1 TGGGTTTCTCAATCTTGGATTTCTTTATTC
40919121 AATTTTCTTG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.12, C:0.13, G:0.17, T:0.58
Consensus pattern (30 bp):
TGGGTTTCTCAATCTTGGATTTCTTTATTC
Found at i:40921894 original size:46 final size:46
Alignment explanation
Indices: 40921836--40922102 Score: 213
Period size: 46 Copynumber: 5.8 Consensus size: 46
40921826 TTTGAGCATT
* * *
40921836 CGAACTCGTTGAGTTGAGTCAGAGTTCATTTATGGATGCGAACGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATC
* * * * *
40921882 CGAAATCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-ACATC
* * * *
40921929 CGAGCTCGTTGACTTGAGTCCGAGTTCACTTATGGATGCGAACGTT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATC
* * * * * * *
40921975 CAAACTCGTTGAGTTGAGTCTGAGTTCA-TGAAATGTA-ACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA-ACATC
*
40922022 CGAACTCGTTGAGTTGAGTCCGTGTTCACTTATGGATGCGAACA-C
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATC
* * *
40922067 CCAAGCTCCTTGAGTTGAGTCTGAGTTCACTTATGG
1 CGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
40922103 GCGGGTTACA
Statistics
Matches: 169, Mismatches: 39, Indels: 26
0.72 0.17 0.11
Matches are distributed among these distances:
43 4 0.02
45 7 0.04
46 89 0.53
47 62 0.37
48 3 0.02
50 4 0.02
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATC
Found at i:40921947 original size:93 final size:93
Alignment explanation
Indices: 40921831--40922095 Score: 379
Period size: 93 Copynumber: 2.8 Consensus size: 93
40921821 AGATATTTGA
* * *
40921831 GCATTCGAACTCGTTGAGTTGAGTCAGAGTTCATTTATGGATGCGAACGTCCGAAA-TCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-AAACTCGTTGAG
* *
40921895 TTGAGTCCGAGTTCGTGAGATGTAACTAG
65 TTGAGTCCGAGTTCATGAAATGTAACTAG
* * *
40921924 GCATCCGAGCTCGTTGACTTGAGTCCGAGTTCACTTATGGATGCGAACGTTCAAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCAAACTCGTTGAGT
*
40921989 TGAGTCTGAGTTCATGAAATGTAACTAG
66 TGAGTCCGAGTTCATGAAATGTAACTAG
* ** * *
40922017 GCATCCGAACTCGTTGAGTTGAGTCCGTGTTCACTTATGGATGCGAACACCCAAGCTCCTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCAAACTCGTTGAGT
*
40922082 TGAGTCTGAGTTCA
66 TGAGTCCGAGTTCA
40922096 CTTATGGGCG
Statistics
Matches: 154, Mismatches: 17, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
92 3 0.02
93 151 0.98
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCAAACTCGTTGAGT
TGAGTCCGAGTTCATGAAATGTAACTAG
Found at i:40922037 original size:47 final size:47
Alignment explanation
Indices: 40921880--40922049 Score: 166
Period size: 47 Copynumber: 3.6 Consensus size: 47
40921870 GATGCGAACG
* * *
40921880 TCCGAAATCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAAATGTAACTAGGCA
* * * * * * * *
40921927 TCCGAGCTCGTTGACTTGAGTCCGAGTTCACT--TATGGATGCGA-ACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TGAAATGTA-ACTAGGCA
* * *
40921973 TTCAAACTCGTTGAGTTGAGTCTGAGTTCATGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAAATGTAACTAGGCA
*
40922020 TCCGAACTCGTTGAGTTGAGTCCGTGTTCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA
40922050 CTTATGGATG
Statistics
Matches: 93, Mismatches: 25, Indels: 10
0.73 0.20 0.08
Matches are distributed among these distances:
45 1 0.01
46 32 0.34
47 59 0.63
48 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAAATGTAACTAGGCA
Found at i:40924106 original size:3 final size:3
Alignment explanation
Indices: 40924098--40924160 Score: 56
Period size: 3 Copynumber: 21.0 Consensus size: 3
40924088 GTATAATAGG
* * * * *
40924098 ATA ATA ATA ATA ACA ATGA A-A ATG ATA ATA GTA ACA ATA ACA ATA
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
40924143 ATA CTA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA
40924161 TCTAAATTTT
Statistics
Matches: 46, Mismatches: 12, Indels: 4
0.74 0.19 0.06
Matches are distributed among these distances:
2 2 0.04
3 42 0.91
4 2 0.04
ACGTcount: A:0.62, C:0.06, G:0.05, T:0.27
Consensus pattern (3 bp):
ATA
Found at i:40924126 original size:21 final size:21
Alignment explanation
Indices: 40924098--40924158 Score: 70
Period size: 21 Copynumber: 2.9 Consensus size: 21
40924088 GTATAATAGG
40924098 ATAATAATAATAACAATGAA-A
1 ATAATAATAATAACAAT-AACA
* *
40924119 ATGATAATAGTAACAATAACA
1 ATAATAATAATAACAATAACA
* *
40924140 ATAATACTAATAATAATAA
1 ATAATAATAATAACAATAA
40924159 TATCTAAATT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
20 2 0.06
21 31 0.94
ACGTcount: A:0.62, C:0.07, G:0.05, T:0.26
Consensus pattern (21 bp):
ATAATAATAATAACAATAACA
Found at i:40925568 original size:19 final size:19
Alignment explanation
Indices: 40925546--40925584 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
40925536 ATGGAATTTA
*
40925546 TATT-TTTTGTTTTGGTTTT
1 TATTATTTT-TTTGGGTTTT
40925565 TATTATTTTTTTGGGTTTT
1 TATTATTTTTTTGGGTTTT
40925584 T
1 T
40925585 GGGTTTCTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.08, C:0.00, G:0.15, T:0.77
Consensus pattern (19 bp):
TATTATTTTTTTGGGTTTT
Found at i:40926544 original size:23 final size:22
Alignment explanation
Indices: 40926510--40926595 Score: 84
Period size: 23 Copynumber: 3.8 Consensus size: 22
40926500 GATGCACCAT
* *
40926510 AGCTCGTAGGAGCTTACTATTTC
1 AGCTCATA-GAGCTTACTAATTC
*
40926533 AGCTCATTGGAGCTTACTAATTC
1 AGCTCA-TAGAGCTTACTAATTC
* *
40926556 AGCTCGAAAGAGCTTACT-GTTC
1 AGCTC-ATAGAGCTTACTAATTC
40926578 AGCTCAATAGAGCTTACT
1 AGCTC-ATAGAGCTTACT
40926596 GTTTATCAGC
Statistics
Matches: 53, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
22 19 0.36
23 32 0.60
24 2 0.04
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (22 bp):
AGCTCATAGAGCTTACTAATTC
Found at i:40926581 original size:22 final size:22
Alignment explanation
Indices: 40926519--40926598 Score: 90
Period size: 23 Copynumber: 3.5 Consensus size: 22
40926509 TAGCTCGTAG
* * *
40926519 GAGCTTACTATTTCAGCTCATTG
1 GAGCTTACT-GTTCAGCTCAATA
*
40926542 GAGCTTACTAATTCAGCTCGAA-A
1 GAGCTTACT-GTTCAGCTC-AATA
40926565 GAGCTTACTGTTCAGCTCAATA
1 GAGCTTACTGTTCAGCTCAATA
40926587 GAGCTTACTGTT
1 GAGCTTACTGTT
40926599 TATCAGCTTA
Statistics
Matches: 51, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
21 2 0.04
22 21 0.41
23 27 0.53
24 1 0.02
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (22 bp):
GAGCTTACTGTTCAGCTCAATA
Found at i:40931559 original size:19 final size:19
Alignment explanation
Indices: 40931535--40931572 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
40931525 GAAATGAATA
40931535 ATTTCAGGCAAATAGGTTG
1 ATTTCAGGCAAATAGGTTG
*
40931554 ATTTCAGGCAAATATGTTG
1 ATTTCAGGCAAATAGGTTG
40931573 GCAATCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.34
Consensus pattern (19 bp):
ATTTCAGGCAAATAGGTTG
Found at i:40933939 original size:40 final size:40
Alignment explanation
Indices: 40933794--40934014 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
40933784 TTGAATGCTG
* *
40933794 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
*
40933833 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
40933872 TCCGGG-TAA--CCAGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
40933909 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
40933949 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
40933990 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
40934015 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 9, Indels: 19
0.85 0.05 0.10
Matches are distributed among these distances:
36 23 0.14
37 8 0.05
38 6 0.04
39 24 0.15
40 94 0.58
41 8 0.05
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:40934032 original size:80 final size:79
Alignment explanation
Indices: 40933832--40934047 Score: 219
Period size: 80 Copynumber: 2.8 Consensus size: 79
40933822 AAGTGACAAT
* ** * * *
40933832 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT-AATCCGGGT-AA-CCAGAAGGCATT
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATT
*
40933893 TGTGCGAGTTACTAA
65 TGTGCGAATTACTAA
* ** * *
40933908 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATT
40933973 TGTGCGAATTACTATA
65 TGTGCGAATTACTA-A
* * *
40933989 A-CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
40934048 TACGTGATTT
Statistics
Matches: 119, Mismatches: 14, Indels: 11
0.83 0.10 0.08
Matches are distributed among these distances:
75 1 0.01
76 34 0.29
77 5 0.04
78 3 0.03
79 16 0.13
80 58 0.49
81 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (79 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTT
GTGCGAATTACTAA
Found at i:40954981 original size:38 final size:38
Alignment explanation
Indices: 40954917--40954991 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
40954907 AATCCGAGTT
*
40954917 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
40954955 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
40954992 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:40955104 original size:40 final size:40
Alignment explanation
Indices: 40955045--40955266 Score: 365
Period size: 40 Copynumber: 5.6 Consensus size: 40
40955035 AGGTCTCGAC
40955045 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
40955084 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
40955124 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
40955164 GATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
40955204 GATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * *
40955244 GTTGTATCCGGACTAAGTTCCGA
1 GATGTATCCGGGCTAAGTCCCGA
40955267 CCGGACTAAG
Statistics
Matches: 169, Mismatches: 13, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 4 0.02
40 165 0.98
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:40955272 original size:16 final size:16
Alignment explanation
Indices: 40955251--40955282 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
40955241 AGTGTTGTAT
40955251 CCGGACTAAGTTCCGA
1 CCGGACTAAGTTCCGA
40955267 CCGGACTAAGTTCCGA
1 CCGGACTAAGTTCCGA
40955283 AGAGCATTCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (16 bp):
CCGGACTAAGTTCCGA
Found at i:40955327 original size:40 final size:40
Alignment explanation
Indices: 40955267--40955368 Score: 150
Period size: 40 Copynumber: 2.5 Consensus size: 40
40955257 TAAGTTCCGA
*
40955267 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
* * *
40955307 CCGTGCTAAGTTCCGAAGAGCATTCGTGCTGGTGTTATAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
* *
40955347 CCGGGCTAGGTCCCGAAGAGCA
1 CCGGGCTAAGTTCCGAAGAGCA
40955369 ATCATGCTGG
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
Found at i:40955335 original size:96 final size:96
Alignment explanation
Indices: 40955171--40955350 Score: 315
Period size: 96 Copynumber: 1.9 Consensus size: 96
40955161 AGTGATGTAT
40955171 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTC
1 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTC
*
40955236 GTGCTAGTGTTGTATCCGGACTAAGTTCCGA
66 GTGCTAGTGTTATATCCGGACTAAGTTCCGA
* * *
40955267 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAGTTCCGAAGAGCATTC
1 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTC
*
40955332 GTGCTGGTGTTATATCCGG
66 GTGCTAGTGTTATATCCGG
40955351 GCTAGGTCCC
Statistics
Matches: 79, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
96 79 1.00
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (96 bp):
CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTC
GTGCTAGTGTTATATCCGGACTAAGTTCCGA
Found at i:40955377 original size:40 final size:40
Alignment explanation
Indices: 40955267--40955381 Score: 149
Period size: 40 Copynumber: 2.9 Consensus size: 40
40955257 TAAGTTCCGA
* * *
40955267 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATATAT
* * *
40955307 CCGTGCTAAGTTCCGAAGAGCATTCGTGCTGGTGTTATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATATAT
* * *
40955347 CCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGA
40955382 CGTGTATTCG
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 65 1.00
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATATAT
Found at i:40958087 original size:25 final size:25
Alignment explanation
Indices: 40958057--40958115 Score: 109
Period size: 25 Copynumber: 2.4 Consensus size: 25
40958047 TAAACTCAAA
40958057 TGGTAAGTTCATATGTGTTTGGACT
1 TGGTAAGTTCATATGTGTTTGGACT
40958082 TGGTAAGTTCATATGTGTTTGGACT
1 TGGTAAGTTCATATGTGTTTGGACT
*
40958107 TGGAAAGTT
1 TGGTAAGTT
40958116 AAGAGCAAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.22, C:0.07, G:0.29, T:0.42
Consensus pattern (25 bp):
TGGTAAGTTCATATGTGTTTGGACT
Found at i:40960103 original size:38 final size:38
Alignment explanation
Indices: 40960061--40960135 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
40960051 AATCCGAGTT
*
40960061 TAAAGACCCGCTGACTATATGA-AGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATAT-ACAGAGATTATGTCCGGG
* *
40960099 TAAAGACCCGATGGCTATGTACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATACAGAGATTATGTCCGG
40960136 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATACAGAGATTATGTCCGGG
Found at i:40960260 original size:40 final size:40
Alignment explanation
Indices: 40960189--40960409 Score: 347
Period size: 40 Copynumber: 5.6 Consensus size: 40
40960179 AGGTCTCGAC
40960189 GATG-ATCCGGGCTAAGT-CCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
40960227 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
40960267 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * *
40960307 GATGTATCCGGACTAAGTTCTGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
40960347 GATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * *
40960387 GTTGTATCCGGACTAAGTTCCGA
1 GATGTATCCGGGCTAAGTCCCGA
40960410 TCGGACTAAG
Statistics
Matches: 166, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
38 4 0.02
39 13 0.08
40 149 0.90
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:40960416 original size:16 final size:16
Alignment explanation
Indices: 40960395--40960425 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
40960385 GTGTTGTATC
40960395 CGGACTAAGTTCCGAT
1 CGGACTAAGTTCCGAT
40960411 CGGACTAAGTTCCGA
1 CGGACTAAGTTCCGA
40960426 AGAGCATTCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.23
Consensus pattern (16 bp):
CGGACTAAGTTCCGAT
Found at i:40960470 original size:40 final size:40
Alignment explanation
Indices: 40960415--40960511 Score: 140
Period size: 40 Copynumber: 2.4 Consensus size: 40
40960405 TCCGATCGGA
*
40960415 CTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTG
1 CTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGG
* * *
40960455 CTAAGTTCTGAAGAGCATTCGTGCTGGTGTTATATCCGGG
1 CTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGG
* *
40960495 CTAGGTCCCGAAGAGCA
1 CTAAGTTCCGAAGAGCA
40960512 ATCATGCTGG
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
CTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGG
Found at i:40960479 original size:96 final size:96
Alignment explanation
Indices: 40960315--40960493 Score: 295
Period size: 96 Copynumber: 1.9 Consensus size: 96
40960305 GTGATGTATC
*
40960315 CGGACTAAGTTCTGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTCG
1 CGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTCG
*
40960380 TGCTAGTGTTGTATCCGGACTAAGTTCCGAT
66 TGCTAGTGTTATATCCGGACTAAGTTCCGAT
* * * *
40960411 CGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAGTTCTGAAGAGCATTCG
1 CGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTCG
*
40960476 TGCTGGTGTTATATCCGG
66 TGCTAGTGTTATATCCGG
40960494 GCTAGGTCCC
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
96 76 1.00
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (96 bp):
CGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTCG
TGCTAGTGTTATATCCGGACTAAGTTCCGAT
Found at i:40960520 original size:40 final size:40
Alignment explanation
Indices: 40960415--40960524 Score: 139
Period size: 40 Copynumber: 2.8 Consensus size: 40
40960405 TCCGATCGGA
* * *
40960415 CTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTG
1 CTAAGTCCCGAAGAGCATTCGTGCTGGTGATATATCCGGG
* * *
40960455 CTAAGTTCTGAAGAGCATTCGTGCTGGTGTTATATCCGGG
1 CTAAGTCCCGAAGAGCATTCGTGCTGGTGATATATCCGGG
* * *
40960495 CTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 CTAAGTCCCGAAGAGCATTCGTGCTGGTGA
40960525 CGTGTATTCG
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
CTAAGTCCCGAAGAGCATTCGTGCTGGTGATATATCCGGG
Found at i:40971903 original size:19 final size:20
Alignment explanation
Indices: 40971870--40971909 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
40971860 ATATATATAT
40971870 ATAAAATAAAGAAAAT-AAA
1 ATAAAATAAAGAAAATGAAA
40971889 ATAAAATAACA-AAAATGAAA
1 ATAAAATAA-AGAAAATGAAA
40971909 A
1 A
40971910 ATGAATAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.78, C:0.03, G:0.05, T:0.15
Consensus pattern (20 bp):
ATAAAATAAAGAAAATGAAA
Found at i:40972181 original size:9 final size:8
Alignment explanation
Indices: 40972151--40972195 Score: 56
Period size: 8 Copynumber: 5.5 Consensus size: 8
40972141 AGAGGTTAGG
*
40972151 TTTTTTTC
1 TTTTTTTA
40972159 TTTTTCTTCA
1 TTTTT-TT-A
40972169 TTTTTTTA
1 TTTTTTTA
40972177 TTTTTTTA
1 TTTTTTTA
40972185 -TTTTTTA
1 TTTTTTTA
40972192 TTTT
1 TTTT
40972196 GGGTTGTATT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
7 7 0.21
8 17 0.52
9 4 0.12
10 5 0.15
ACGTcount: A:0.09, C:0.07, G:0.00, T:0.84
Consensus pattern (8 bp):
TTTTTTTA
Found at i:40977436 original size:43 final size:43
Alignment explanation
Indices: 40977387--40977589 Score: 309
Period size: 43 Copynumber: 4.7 Consensus size: 43
40977377 TCGATGCCTC
* * * *
40977387 TGTCCCAGACAGGGTCTTACACGAAATC-GAATAACGATGCCAA
1 TGTCCCAGACATGGTCTTACACGTAATCACAAT-ACAATGCCAA
* *
40977430 TATCCCAGACATGGTCTTACACGTAATCACAAAACAATGCCAA
1 TGTCCCAGACATGGTCTTACACGTAATCACAATACAATGCCAA
40977473 TGTCCCAGACATGGTCTTACACGTAATCACAATACAATGCCAA
1 TGTCCCAGACATGGTCTTACACGTAATCACAATACAATGCCAA
*
40977516 TGTCCTAGACATGGTCTTACACGTAATCACAATACAATGCCAA
1 TGTCCCAGACATGGTCTTACACGTAATCACAATACAATGCCAA
* *
40977559 TGTCCTAGACATGGTCTTACATGTAATCACA
1 TGTCCCAGACATGGTCTTACACGTAATCACA
40977590 TCTCGATAAT
Statistics
Matches: 149, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
43 147 0.99
44 2 0.01
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.24
Consensus pattern (43 bp):
TGTCCCAGACATGGTCTTACACGTAATCACAATACAATGCCAA
Found at i:40977489 original size:86 final size:86
Alignment explanation
Indices: 40977329--40977589 Score: 301
Period size: 86 Copynumber: 3.0 Consensus size: 86
40977319 CATAAAACTC
* * * * * * **
40977329 ATACAATGCC-ATATCTCAGATATGGTCTTACATGTAAGATATCACATATCGATGCCTCTGTCCC
1 ATACAATGCCAATATCCCAGACATGGTCTTACACGT---A-ATCACAAAACAATGCCAATGTCCC
* *
40977393 AGACAGGGTCTTACACGAAATC-GA
62 AGACATGGTCTTACACGAAATCACA
*
40977417 ATAACGATGCCAATATCCCAGACATGGTCTTACACGTAATCACAAAACAATGCCAATGTCCCAGA
1 AT-ACAATGCCAATATCCCAGACATGGTCTTACACGTAATCACAAAACAATGCCAATGTCCCAGA
*
40977482 CATGGTCTTACACGTAATCACA
65 CATGGTCTTACACGAAATCACA
* * * *
40977504 ATACAATGCCAATGTCCTAGACATGGTCTTACACGTAATCACAATACAATGCCAATGTCCTAGAC
1 ATACAATGCCAATATCCCAGACATGGTCTTACACGTAATCACAAAACAATGCCAATGTCCCAGAC
* *
40977569 ATGGTCTTACATGTAATCACA
66 ATGGTCTTACACGAAATCACA
40977590 TCTCGATAAT
Statistics
Matches: 152, Mismatches: 18, Indels: 8
0.85 0.10 0.04
Matches are distributed among these distances:
86 117 0.77
87 4 0.03
88 2 0.01
89 7 0.05
90 22 0.14
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.25
Consensus pattern (86 bp):
ATACAATGCCAATATCCCAGACATGGTCTTACACGTAATCACAAAACAATGCCAATGTCCCAGAC
ATGGTCTTACACGAAATCACA
Found at i:40979824 original size:21 final size:21
Alignment explanation
Indices: 40979798--40979846 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
40979788 GAACTCCTAA
*
40979798 AATTTTTTGCAAAATTTCTAC
1 AATTTTCTGCAAAATTTCTAC
40979819 AATTTTCTGCAAAATTTCTAC
1 AATTTTCTGCAAAATTTCTAC
40979840 AATTTTC
1 AATTTTC
40979847 CTAGGTGCAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.33, C:0.16, G:0.04, T:0.47
Consensus pattern (21 bp):
AATTTTCTGCAAAATTTCTAC
Found at i:40980549 original size:13 final size:13
Alignment explanation
Indices: 40980526--40980559 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
40980516 AAACATATTA
40980526 TAAACATTTTGTGT
1 TAAA-ATTTTGTGT
40980540 TAAAATTTTGTGT
1 TAAAATTTTGTGT
40980553 TAGAAAT
1 TA-AAAT
40980560 AATAAAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.35, C:0.03, G:0.15, T:0.47
Consensus pattern (13 bp):
TAAAATTTTGTGT
Found at i:40981910 original size:40 final size:40
Alignment explanation
Indices: 40981862--40982107 Score: 406
Period size: 40 Copynumber: 6.2 Consensus size: 40
40981852 GGACTAAGAT
* *
40981862 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
40981902 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
40981942 CCGAAGGCATTTGTAG-GAGTTACTATATCCGGGCCAAGTC
1 CCGAAGGCATTTGT-GCGAGTTACTATATCCGGGCTAAGTC
*
40981982 CCGAAGGCATTTGTGCGAGTTCCTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
40982022 CCGAAGGCATTTGTGCGAGTTACTTTATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* *
40982062 CCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
40982101 CCGAAGG
1 CCGAAGG
40982108 TACTTGGGTT
Statistics
Matches: 194, Mismatches: 10, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
39 16 0.08
40 177 0.91
41 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:40985592 original size:40 final size:40
Alignment explanation
Indices: 40985547--40985938 Score: 520
Period size: 40 Copynumber: 9.8 Consensus size: 40
40985537 ATAACCACAA
* * * *
40985547 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
40985587 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
40985627 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* * * *
40985667 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
40985707 GCACAAATGCATTCGGGTCTTAGCCCGGATGTATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
40985747 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* * *
40985787 GCATAAATGCCTTCGGGACTTAGCCCGGATATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
**
40985827 GCACAAATGCCTTCGGGTCTTAGCCCAAATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* * *
40985867 GCACAAATGCCTTCGGGTCTTAGCCCGAATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* *
40985907 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
40985939 CATTCAAATG
Statistics
Matches: 308, Mismatches: 39, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
39 7 0.02
40 290 0.94
41 11 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:40985744 original size:120 final size:120
Alignment explanation
Indices: 40985531--40985934 Score: 655
Period size: 120 Copynumber: 3.4 Consensus size: 120
40985521 CGGAATTTAT
* * * * *
40985531 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATG
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGACTTAACCCGGGTATAGCAACTCGCACAAATG
40985596 CCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGC
66 CCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGC
* *
40985651 CCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATG
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGACTTAACCCGGGTATAGCAACTCGCACAAATG
* *
40985716 CATTCGGGTCTTAGCCCGGATGTATCAACTCGCACAAATGCCTTCGGGTCTTAGC
66 CCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGC
* * *
40985771 CCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGACTTAACCCGGGTATAGCAACTCGCACAAATG
**
40985836 CCTTCGGGTCTTAGCCCAAATATATCAACTCGCACAAATGCCTTCGGGTCTTAGC
66 CCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGC
* * *
40985891 CCGAATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGG
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGACTTAACCCGG
40985935 ATATCATTCA
Statistics
Matches: 269, Mismatches: 15, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
120 269 1.00
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (120 bp):
CCGGATAAAATCACTAGCACAAATGCCTTCGGGACTTAACCCGGGTATAGCAACTCGCACAAATG
CCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGC
Found at i:40992676 original size:37 final size:37
Alignment explanation
Indices: 40992626--40992704 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
40992616 TTATTACGAA
* * *
40992626 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
40992663 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
40992700 GTCTT
1 GTCTT
40992705 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:40992910 original size:47 final size:47
Alignment explanation
Indices: 40992823--40993562 Score: 1039
Period size: 47 Copynumber: 15.4 Consensus size: 47
40992813 CCTTTCGGGA
* * * * * * * * *
40992823 CTTATCACATTTATGCACTTTCACATCCATTACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * *
40992870 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * * *
40992917 CTTATCACATATATAAACTTTCACATTCATCGCATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
40992964 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
40993011 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
40993058 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
40993105 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
40993152 CTTATTACATATATACATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTA-T-CACATAT--ATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
40993203 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
40993250 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
40993297 CTTATTACATATATACATATACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATAC----ACTTTCACATTCATCACATCGGCTATTAGGC
*
40993348 CTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT--ATACACTTTCACATTCATCACATCGGCTATTAGGC
* * *
40993397 CTTATTAAATATGTACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
40993444 CTTATTACATATATACATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATAC----ACTTTCACATTCATCACATCGGCTATTAGGC
40993495 CTTATCACATATACATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATAT--ATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
40993544 CTTATTACACATATACACT
1 CTTATCACATATATACACT
40993563 CTCTTGGCTG
Statistics
Matches: 632, Mismatches: 45, Indels: 32
0.89 0.06 0.05
Matches are distributed among these distances:
47 410 0.65
48 1 0.00
49 90 0.14
50 1 0.00
51 122 0.19
53 8 0.01
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:40993236 original size:145 final size:145
Alignment explanation
Indices: 40992882--40993562 Score: 1118
Period size: 147 Copynumber: 4.7 Consensus size: 145
40992872 TGTCACATAT
* *
40992882 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAAACTTTCACATTCAT
1 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCAT
* * * *
40992947 CGCATCGGCCATTAAGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
66 CACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCC
40993012 TTATTAC--ATAT--
131 TTATTACATATATAC
*
40993023 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCAT
1 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCAT
* *
40993088 CACGTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCC
66 CACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCC
40993153 TTATTACATATATAC
131 TTATTACATATATAC
*
40993168 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCAT
1 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCAT
*
40993233 CACGTCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCC
66 CACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCC
40993298 TTATTACATATATAC
131 TTATTACATATATAC
*
40993313 ATATACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATACATACACTTTCACATTC
1 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATAT--ATACACTTTCACATTC
* * * *
40993378 ATCACATCGGCCATTAGGCCTTATTAAATATGTACACTTTCACATTCATCACATCGGCTATTAGG
64 ATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGG
40993443 CCTTATTACATATATAC
129 CCTTATTACATATATAC
* *
40993460 ATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTC
1 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATAT--ATACACTTTCACATTC
* *
40993525 ATCACATCGGCTATTAGGCCTTATTACACATATACACT
64 ATCACATCGGCTATTAGGCCTTATCACATATATACACT
40993563 CTCTTGGCTG
Statistics
Matches: 512, Mismatches: 22, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
141 128 0.25
143 4 0.01
145 189 0.37
147 191 0.37
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (145 bp):
ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCAT
CACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCC
TTATTACATATATAC
Found at i:40996594 original size:13 final size:13
Alignment explanation
Indices: 40996571--40996604 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
40996561 AAACATATTA
40996571 TAAACATTTTGTGT
1 TAAA-ATTTTGTGT
40996585 TAAAATTTTGTGT
1 TAAAATTTTGTGT
40996598 TAGAAAT
1 TA-AAAT
40996605 AATAAAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.35, C:0.03, G:0.15, T:0.47
Consensus pattern (13 bp):
TAAAATTTTGTGT
Found at i:40997956 original size:40 final size:40
Alignment explanation
Indices: 40997908--40998193 Score: 468
Period size: 40 Copynumber: 7.2 Consensus size: 40
40997898 GGACTAAGAT
* *
40997908 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
40997948 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
40997988 CCGAAGGCATTTGTGCGAGTTACTATATCCAGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
** *
40998028 CCGAAGGCATTTGTATGAGTTACTATATCCGGGCCAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
40998068 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
40998108 CCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGT-
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* *
40998147 CCGAAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATC
1 CCG-AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
40998187 CCGAAGG
1 CCGAAGG
40998194 TACTTGGGTT
Statistics
Matches: 232, Mismatches: 12, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
39 14 0.06
40 218 0.94
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:41000504 original size:57 final size:58
Alignment explanation
Indices: 41000411--41000551 Score: 169
Period size: 57 Copynumber: 2.4 Consensus size: 58
41000401 ATCATATAAT
** * * * **
41000411 AGGATTACTTGTCCAAGCTAAATCTTGTTTCCAACATATGCTCATA-AGAGCTTA-ATC
1 AGGATTACCAGTCCAAGCTAAATCCTATCTATAACATATGCTCA-AGAGAGCTTATATC
* * *
41000468 AGGATTACCCGTCCAGGCTAAATCCTATCTATAACATATGCTCAAGAGGGCTTATATC
1 AGGATTACCAGTCCAAGCTAAATCCTATCTATAACATATGCTCAAGAGAGCTTATATC
41000526 AGGATTACCAGTCCAAGCTAAATCCT
1 AGGATTACCAGTCCAAGCTAAATCCT
41000552 TTCTGTAATG
Statistics
Matches: 71, Mismatches: 11, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
56 1 0.01
57 43 0.61
58 27 0.38
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (58 bp):
AGGATTACCAGTCCAAGCTAAATCCTATCTATAACATATGCTCAAGAGAGCTTATATC
Found at i:41002392 original size:37 final size:37
Alignment explanation
Indices: 41002247--41002403 Score: 174
Period size: 37 Copynumber: 4.3 Consensus size: 37
41002237 AGACGTACAA
* * * *
41002247 ACTATCTA-TTGGCAATGTAAAATACGAGAAATGCTT
1 ACTATCTATTTGGCGATATAAAATACAAGAAATGCGT
* * *
41002283 ACTATCCATTTGACGATATAAAATACAAGAAATGCAT
1 ACTATCTATTTGGCGATATAAAATACAAGAAATGCGT
* *
41002320 ACAATCTATTTGGCGATATAAAATGA-AAAAAATGCGT
1 ACTATCTATTTGGCGATATAAAAT-ACAAGAAATGCGT
* *
41002357 ACTATCTATTTGGCGATACAAAATATAAGAAATGCGT
1 ACTATCTATTTGGCGATATAAAATACAAGAAATGCGT
* *
41002394 AATGTCTATT
1 ACTATCTATT
41002404 AAGATGTGAG
Statistics
Matches: 102, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
36 8 0.08
37 93 0.91
38 1 0.01
ACGTcount: A:0.42, C:0.13, G:0.15, T:0.30
Consensus pattern (37 bp):
ACTATCTATTTGGCGATATAAAATACAAGAAATGCGT
Found at i:41005042 original size:27 final size:27
Alignment explanation
Indices: 41005003--41005054 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
41004993 ACGCTCTAAA
*
41005003 GCAATCCAGTTAGAGTATGCTACAAGG
1 GCAATCCAGTTAGAGTATGCCACAAGG
* *
41005030 GCAATTCATTTAGAGTATGCCACAA
1 GCAATCCAGTTAGAGTATGCCACAA
41005055 AGGCTGACAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (27 bp):
GCAATCCAGTTAGAGTATGCCACAAGG
Found at i:41005561 original size:201 final size:201
Alignment explanation
Indices: 41005171--41005574 Score: 568
Period size: 201 Copynumber: 2.0 Consensus size: 201
41005161 AAAGAACCCT
* *
41005171 ATTAGATAAAATTTCATTCAACAGTTCCTTTTTAGAGTATGTCATGGCGATGGACTTTTTGCTTC
1 ATTAGATAAAATGTCATTCAACAGTTCCTTTTTAGAGTATGTCATGGCGATGGACTTTTTCCTTC
* * *
41005236 AGAGCTTCATATCAGAGTTCGTGTTTACTGTCCCAACGGATTTCCTTAATTACCACTGCGGTGAC
66 AGAGCTTCATATCAAAGTTCATGTTTACTGTCCCAACGGACTTCCTTAATTACCACTGCGGTGAC
* ** * *
41005301 TCAACTCACTTTACAAACTCTATGTATAAGAATTTCATAACTCTATGTACTAGACACTTTTTATA
131 TCAACTCACTTTACAAACTCTATGTACAAGAACATCACAACTCTAGGTACTAGACACTTTTTATA
41005366 CATCCC
196 CATCCC
*
41005372 ATTAGATAAAATGTCATTCAATAGTT-CTTTTTCAGAGTATGTCATGGCGATGGACTTTTTCCTT
1 ATTAGATAAAATGTCATTCAACAGTTCCTTTTT-AGAGTATGTCATGGCGATGGACTTTTTCCTT
* *
41005436 CAGAGCTTCATATCAAAGTTCATGTTTACTGTCCCGA-GGACTTCTTTAATTACCACCT-CGGTG
65 CAGAGCTTCATATCAAAGTTCATGTTTACTGTCCCAACGGACTTCCTTAATTACCA-CTGCGGTG
* * *
41005499 ACTCAACTCACTTTACAAACTCTATGTACCAGATACATCCCAGAC-CTAGG-ATTTCA-ACACTT
129 ACTCAACTCACTTTACAAACTCTATGTACAAGA-ACATCACA-ACTCTAGGTA-CT-AGACACTT
41005561 TTTATACATCCC
190 TTTATACATCCC
41005573 AT
1 AT
41005575 AGAACTTATT
Statistics
Matches: 181, Mismatches: 16, Indels: 12
0.87 0.08 0.06
Matches are distributed among these distances:
200 59 0.33
201 119 0.66
202 3 0.02
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.36
Consensus pattern (201 bp):
ATTAGATAAAATGTCATTCAACAGTTCCTTTTTAGAGTATGTCATGGCGATGGACTTTTTCCTTC
AGAGCTTCATATCAAAGTTCATGTTTACTGTCCCAACGGACTTCCTTAATTACCACTGCGGTGAC
TCAACTCACTTTACAAACTCTATGTACAAGAACATCACAACTCTAGGTACTAGACACTTTTTATA
CATCCC
Found at i:41010806 original size:47 final size:48
Alignment explanation
Indices: 41010734--41010865 Score: 194
Period size: 47 Copynumber: 2.8 Consensus size: 48
41010724 CTCAATCGAT
* *
41010734 AAGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTTATC-TCG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTTCG
* * *
41010781 AAGTACCTATACTATGGCCCGTAGCCAAATCAAGGTAACTCCTCTTTG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTTCG
* *
41010829 AAATACCTATACCATGGCCCGTAGCCAAATAAAGGTA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTA
41010866 TCATTCCCAC
Statistics
Matches: 76, Mismatches: 8, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
47 40 0.53
48 36 0.47
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.23
Consensus pattern (48 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTTCG
Found at i:41027107 original size:21 final size:21
Alignment explanation
Indices: 41027083--41027129 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
41027073 CAAAAAATGC
41027083 ATTACTAATATA-AAAATATAT
1 ATTA-TAATATATAAAATATAT
* *
41027104 ATTATATTATATATAATATAT
1 ATTATAATATATAAAATATAT
41027125 ATTAT
1 ATTAT
41027130 TTTTTGGTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 6 0.26
21 17 0.74
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (21 bp):
ATTATAATATATAAAATATAT
Found at i:41040329 original size:14 final size:16
Alignment explanation
Indices: 41040304--41040345 Score: 52
Period size: 14 Copynumber: 2.8 Consensus size: 16
41040294 TTTTATGTTT
*
41040304 TATATATATTTTA-TG
1 TATATTTATTTTATTG
41040319 T-TATTTATTTTATTG
1 TATATTTATTTTATTG
*
41040334 TATTTTTATTTT
1 TATATTTATTTT
41040346 TGGAAAAAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 10 0.43
15 4 0.17
16 9 0.39
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (16 bp):
TATATTTATTTTATTG
Found at i:41043415 original size:48 final size:46
Alignment explanation
Indices: 41043313--41043574 Score: 282
Period size: 48 Copynumber: 5.6 Consensus size: 46
41043303 TTGGATGTGT
* ** * *
41043313 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCA-CATTATGAGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGG-CATTAAGACGAGA
*
41043359 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGACGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATTAAGACGAGA
*
41043407 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCT-AGTA-GCA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCAT-TAAG-ACG-AGA
41043453 GCTAGTGTAAGACCATGTCTGGGACATGACATCGGCATTAAGACGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACATG-CATCGGCATTAAGACGAGA
* * * *
41043501 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCTAGATATGCA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCAT-TA-AGACG-AGA
*
41043549 GCTAGTGTAAGACCTGTCTGGGACAT
1 GCTAGTGTAAGACATGTCTGGGACAT
41043575 AGATCTAAAC
Statistics
Matches: 188, Mismatches: 14, Indels: 26
0.82 0.06 0.11
Matches are distributed among these distances:
46 43 0.23
47 68 0.36
48 76 0.40
49 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTAAGACGAGA
Found at i:41043474 original size:94 final size:94
Alignment explanation
Indices: 41043313--41043678 Score: 413
Period size: 94 Copynumber: 3.9 Consensus size: 94
41043303 TTGGATGTGT
* * * *
41043313 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATG-AGTGCCAGTGTAAGACCATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCTAGTATGCA-AGCTAGTGTAAGACC-TG
41043376 TCTGGGACATGGCATCGGCATTAAGACGAGA
64 TCTGGGACATGGCATCGGCATTAAGACGAGA
41043407 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCTAGTA-GCAAGCTAGTGTAAGACCATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCTAGTATGCAAGCTAGTGTAAGACC-TGT
*
41043471 CTGGGACATGACATCGGCATTAAGACGAGA
65 CTGGGACATGGCATCGGCATTAAGACGAGA
*
41043501 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCTAGATATGCAAGCTAGTGTAAGACCTGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCTAG-TATGCAAGCTAGTGTAAGACCTGT
* ** * *
41043566 CTGGGACATAG-ATCTAAACCAATAA-ATGAGA
65 CTGGGACATGGCATC---GGCATTAAGACGAGA
* * * * * *
41043597 GTTAGTGTAAGACCTATCTGGGACATGTCATCGGCATCGA-TATTAGAAAG-TCAGTGTAAGACC
1 GCTAGTGTAAGACATGTCTGGGACATG-CATCGGCCTCTAGTA-T-GCAAGCT-AGTGTAAGACC
* *
41043660 TGTTTAGGACATGGCATCG
62 TGTCTGGGACATGGCATCG
41043679 ACTTAGACAT
Statistics
Matches: 237, Mismatches: 23, Indels: 23
0.84 0.08 0.08
Matches are distributed among these distances:
94 125 0.53
95 20 0.08
96 49 0.21
97 40 0.17
98 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCTAGTATGCAAGCTAGTGTAAGACCTGTC
TGGGACATGGCATCGGCATTAAGACGAGA
Found at i:41049449 original size:30 final size:31
Alignment explanation
Indices: 41049386--41049449 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 31
41049376 TCGATTTACG
* **
41049386 AGTCTAGGGGTAAAATCATAATTTTTGTGAA
1 AGTCTAGGGGCAAAATCATAATTTTTGCCAA
* *
41049417 AGTCTAGGGGCAAAATGATCA-TTTTGCCAA
1 AGTCTAGGGGCAAAATCATAATTTTTGCCAA
41049447 AGT
1 AGT
41049450 ATGAATTGTG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
30 10 0.36
31 18 0.64
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.31
Consensus pattern (31 bp):
AGTCTAGGGGCAAAATCATAATTTTTGCCAA
Found at i:41052312 original size:49 final size:49
Alignment explanation
Indices: 41052159--41052335 Score: 193
Period size: 49 Copynumber: 3.7 Consensus size: 49
41052149 TATGAGTGCC
* * * *
41052159 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTTAAG--ACGAGAGCT
1 AGTGTAAGACC-TGTCTGGGACATGGCATCGACCTCAAGATATGAAAGCT
* * *
41052207 AGTGTAAGACATGTCTGGGACAT-GTATCGACCTCAAGATATGCAAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCAAGATATGAAAGCT
* * *
41052255 AGTGTAAGACCTGTCTGGGACATGGCATC-AGCCTCGATATATGAAA-TT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGA-CCTCAAGATATGAAAGCT
*
41052303 CAGTGTAAGACCTGCCTGGGACATGGCATCGAC
1 -AGTGTAAGACCTGTCTGGGACATGGCATCGAC
41052336 TTAGACATGT
Statistics
Matches: 109, Mismatches: 14, Indels: 11
0.81 0.10 0.08
Matches are distributed among these distances:
46 11 0.10
47 12 0.11
48 40 0.37
49 45 0.41
50 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCAAGATATGAAAGCT
Found at i:41058151 original size:13 final size:13
Alignment explanation
Indices: 41058133--41058172 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
41058123 CATGCAAATT
41058133 AAGAAAGAAAAGA
1 AAGAAAGAAAAGA
41058146 AAGAAAGAAAAGA
1 AAGAAAGAAAAGA
**
41058159 AAGGGAGAAAAGA
1 AAGAAAGAAAAGA
41058172 A
1 A
41058173 GTCACGCTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (13 bp):
AAGAAAGAAAAGA
Found at i:41062384 original size:30 final size:30
Alignment explanation
Indices: 41062343--41062410 Score: 109
Period size: 30 Copynumber: 2.3 Consensus size: 30
41062333 ACATGGATAG
*
41062343 ACACACAGGTATATGTCTAGGCCATGTGTA
1 ACACACGGGTATATGTCTAGGCCATGTGTA
* *
41062373 ACACACGGGTATGTGTCTAGGCCATGTGTG
1 ACACACGGGTATATGTCTAGGCCATGTGTA
41062403 ACACACGG
1 ACACACGG
41062411 TGTAACACCC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (30 bp):
ACACACGGGTATATGTCTAGGCCATGTGTA
Found at i:41063569 original size:29 final size:24
Alignment explanation
Indices: 41063517--41063563 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
41063507 TATGATGCAT
41063517 TGCATCGGGGTAGGTTTGATGAAG
1 TGCATCGGGGTAGGTTTGATGAAG
41063541 TGCATCGGGGTAGGTTTGATGAA
1 TGCATCGGGGTAGGTTTGATGAA
41063564 AAGAAGGGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.21, C:0.09, G:0.40, T:0.30
Consensus pattern (24 bp):
TGCATCGGGGTAGGTTTGATGAAG
Found at i:41068493 original size:68 final size:65
Alignment explanation
Indices: 41068279--41068500 Score: 202
Period size: 67 Copynumber: 3.4 Consensus size: 65
41068269 CATAATTTTG
* * *
41068279 GCTCTCTTGTACACATGGTGAACACTTAGTACCACCCATGTGACCTAGCCACT--TTATCTCGTA
1 GCTCTCTTGTACACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACTCATTATCTCGTA
** * * * * *
41068342 GCTCTCTTGTTTACATGGTGTCCTTCACTTGGAACCACACATGCAACCTAGCTA--CATTTATCT
1 GCTCTCTTGTACACATGGTG---TACACTTAGTACCACCCATGCGACCTAGCTACTCA-TTATCT
*
41068405 CATA
62 CGTA
* * *
41068409 GCTCTCTTGT-CTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACCTCATAATGTCT
1 GCTCTCTTGTAC-ACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTA-CTCAT--TATCT
41068473 CGTA
62 CGTA
*
41068477 GCTCTCTTGTACACATGGTATACA
1 GCTCTCTTGTACACATGGTGTACA
41068501 TCCCGTATTA
Statistics
Matches: 124, Mismatches: 22, Indels: 21
0.74 0.13 0.13
Matches are distributed among these distances:
63 18 0.15
64 24 0.19
66 24 0.19
67 29 0.23
68 28 0.23
69 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.32
Consensus pattern (65 bp):
GCTCTCTTGTACACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACTCATTATCTCGTA
Found at i:41068522 original size:68 final size:68
Alignment explanation
Indices: 41068402--41068528 Score: 159
Period size: 68 Copynumber: 1.9 Consensus size: 68
41068392 GCTACATTTA
* * *
41068402 TCTCATAGCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACCTCATA
1 TCTCATAGCTCTCTTGTCTACATGGTATACACACAGTATCACACATGCGACCTAGCTACCTCATA
41068467 ATG
66 ATG
* * * *
41068470 TCTCGTAGCTCTCTTGTAC-ACATGGTATACATC-CCGTATTACACATGTGACCTAGCTAC
1 TCTCATAGCTCTCTTGT-CTACATGGTATACA-CACAGTATCACACATGCGACCTAGCTAC
41068529 ATACCATCTG
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
68 48 0.96
69 2 0.04
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.31
Consensus pattern (68 bp):
TCTCATAGCTCTCTTGTCTACATGGTATACACACAGTATCACACATGCGACCTAGCTACCTCATA
ATG
Found at i:41070899 original size:45 final size:45
Alignment explanation
Indices: 41070820--41070992 Score: 201
Period size: 45 Copynumber: 3.9 Consensus size: 45
41070810 TTTTCTCAAA
* * * * * *
41070820 TCACTGGCATT-TCGCCTGCTAGGATC-GAGGCCCGATTA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATC
* *
41070863 TCATCGGCATTATAGCCTACTAGGCTCGAAA-GCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAGTATC
* *
41070908 TCACCGGCATTATAGCCTGCTAGGCCCAAAGGCCCGAATAGTGTC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
41070953 TCACCGGCATAATAGCCTGCTAGGCTCAAAGGCCCGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
41070993 TAATACCAGC
Statistics
Matches: 111, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
43 9 0.08
44 15 0.14
45 85 0.77
46 2 0.02
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:41071033 original size:38 final size:38
Alignment explanation
Indices: 41070985--41071232 Score: 370
Period size: 38 Copynumber: 6.5 Consensus size: 38
41070975 GGCTCAAAGG
* * *
41070985 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
41071023 CCCGGATATAATACCAGCACGAAGCCTGCTGGAATTAAA
1 CCCGGATATAATACCAGCACGAAGCCTGC-GGGATTTAA
*
41071062 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
** *
41071100 CCAAGATATAATACCAGCACGAAGCCTGCGGGAATTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
41071138 CCCGGATATATTACCAGCACGAAACCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
41071176 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
41071214 CCCGGATATAATTCCAGCA
1 CCCGGATATAATACCAGCA
41071233 TATAGCCTGC
Statistics
Matches: 189, Mismatches: 20, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
38 154 0.81
39 35 0.19
ACGTcount: A:0.33, C:0.26, G:0.21, T:0.20
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:41071637 original size:43 final size:44
Alignment explanation
Indices: 41071529--41071663 Score: 184
Period size: 43 Copynumber: 3.1 Consensus size: 44
41071519 ATATAACATT
*
41071529 TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCTCGAATAA
1 TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAA-GCCCGAAT-A
* * *
41071575 T-ATTTCACCGGCATCATAGCCTACTAAGCTCAAAGCCCG-ATA
1 TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGAATA
* *
41071617 TCATTTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGAATA
1 TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGAATA
41071661 TCA
1 TCA
41071664 CATTTCGATA
Statistics
Matches: 78, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
42 2 0.03
43 35 0.45
44 10 0.13
45 30 0.38
46 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (44 bp):
TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGAATA
Found at i:41076264 original size:39 final size:39
Alignment explanation
Indices: 41076210--41076433 Score: 367
Period size: 39 Copynumber: 5.7 Consensus size: 39
41076200 TGTGTGAGAT
* *
41076210 TTATATCCGGGCTAAGTCCTGAAGGCATTCGTGCTGGTA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
41076249 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
* * *
41076288 TTTTATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
41076327 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
* * *
41076366 TTATATCCGGGCTAAGTCCCGAAGGCATTCATGTTGATG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
*
41076405 TTATATCCGGGCTAAGTTCCGAAGGCATT
1 TTATATCCGGGCTAAGTCCCGAAGGCATT
41076434 TGGGTTGGAA
Statistics
Matches: 173, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 173 1.00
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.30
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
Found at i:41081688 original size:40 final size:40
Alignment explanation
Indices: 41081620--41081697 Score: 104
Period size: 40 Copynumber: 1.9 Consensus size: 40
41081610 TGCGGTACCT
*
41081620 TATGATGTGTAGGGATGGATGGGACGATTGTATCCCCATA
1 TATGATGTGCAGGGATGGATGGGACGATTGTATCCCCATA
* * *
41081660 TATGGTGTGCAGGGATCGG-TGGGTCGATTTTATCCCCA
1 TATGATGTGCAGGGAT-GGATGGGACGATTGTATCCCCA
41081698 CATGGTGTGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 31 0.94
41 2 0.06
ACGTcount: A:0.21, C:0.15, G:0.33, T:0.31
Consensus pattern (40 bp):
TATGATGTGCAGGGATGGATGGGACGATTGTATCCCCATA
Found at i:41085718 original size:27 final size:27
Alignment explanation
Indices: 41085688--41085865 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
41085678 ATATTGAGTC
* * * *
41085688 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
41085715 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
41085742 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
41085770 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
41085797 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
41085824 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
41085851 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
41085866 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:41085827 original size:82 final size:81
Alignment explanation
Indices: 41085709--41085864 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
41085699 TGCTATATAA
* *
41085709 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
41085774 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
41085791 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
41085855 CACTTAGTGC
65 CACTTAGTGC
41085865 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:41101552 original size:11 final size:11
Alignment explanation
Indices: 41101538--41101587 Score: 68
Period size: 11 Copynumber: 4.7 Consensus size: 11
41101528 TTTCAATATT
41101538 CTCTCAAATTC
1 CTCTCAAATTC
41101549 CTCTCAAA-T-
1 CTCTCAAATTC
*
41101558 CTCTCAAATTT
1 CTCTCAAATTC
*
41101569 CTCTTAAATTC
1 CTCTCAAATTC
41101580 CTCTCAAA
1 CTCTCAAA
41101588 ACTCTCGTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
9 8 0.24
10 2 0.06
11 24 0.71
ACGTcount: A:0.30, C:0.32, G:0.00, T:0.38
Consensus pattern (11 bp):
CTCTCAAATTC
Found at i:41101562 original size:20 final size:21
Alignment explanation
Indices: 41101530--41101587 Score: 73
Period size: 20 Copynumber: 2.7 Consensus size: 21
41101520 CTTCAATCTT
41101530 TCAATATTCTCTCAAATTCCTC
1 TCAA-ATTCTCTCAAATTCCTC
*
41101552 TCAAA-TCTCTCAAATTTCTC
1 TCAAATTCTCTCAAATTCCTC
*
41101572 TTAAATTCCTCTCAAA
1 TCAAATT-CTCTCAAA
41101588 ACTCTCGTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 18 0.56
21 2 0.06
22 12 0.38
ACGTcount: A:0.31, C:0.29, G:0.00, T:0.40
Consensus pattern (21 bp):
TCAAATTCTCTCAAATTCCTC
Found at i:41103411 original size:18 final size:18
Alignment explanation
Indices: 41103388--41103430 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
41103378 TGTCAGGTAC
41103388 GTATCCTAGCCCTTT-TAT
1 GTATCCTAG-CCTTTATAT
41103406 GTATCCTAGCCTTTATAT
1 GTATCCTAGCCTTTATAT
*
41103424 GTTTCCT
1 GTATCCT
41103431 TTTTCTAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 5 0.22
18 18 0.78
ACGTcount: A:0.16, C:0.26, G:0.12, T:0.47
Consensus pattern (18 bp):
GTATCCTAGCCTTTATAT
Found at i:41104117 original size:116 final size:116
Alignment explanation
Indices: 41103815--41104428 Score: 1070
Period size: 116 Copynumber: 5.3 Consensus size: 116
41103805 TATTTGTACA
*
41103815 AACATTTTGAATCTTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
41103880 TGTAATTTACTTTTATATTTTTTAATAAAATGGAAATTATTTTAAATAAGGC
66 TGTAATTTACTTTTATA-TTTTTAATAAAATGGAAATTATTTTAAATAAGGC
41103932 AACA-TTTGAATATTTTT-TATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
* *
41103995 TATAATTTATTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
*
41104046 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTCTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
*
41104111 TGTAATTTACTTTTATATTTTTAATAAAATAGAAATTATTTTAAATAAGGC
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
*
41104162 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAATGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
41104227 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
* * * *
41104278 AACATTTTGAATATTTTTATATTATTTCATGTGATAATATAAAAAGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
* ** *
41104343 TATAATTTACTTTTATATTTTTAATAAAATAAAAATTATTTTAAATAAAGC
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
*
41104394 AATATTTTGAATATTTTTATATTATTTCATGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAAT
41104429 AAAATATAAA
Statistics
Matches: 475, Mismatches: 20, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
114 38 0.08
115 74 0.16
116 359 0.76
117 4 0.01
ACGTcount: A:0.40, C:0.04, G:0.09, T:0.47
Consensus pattern (116 bp):
AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
Found at i:41107680 original size:126 final size:126
Alignment explanation
Indices: 41107450--41107987 Score: 837
Period size: 126 Copynumber: 4.3 Consensus size: 126
41107440 GCCCAAGTTA
* *
41107450 TTTCAGAAACCACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
***
41107515 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTATGCAGACACGTCTTCTCAAAATTATTT
66 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGCACAGACACGTCTTCTCAAAATTATTT
* * * *
41107576 TTTCAGAGACCACTGTAGCAAAAGAGCATCCACGTGGGAGCTTCTTCCAGTAATTTTGCTGAAAA
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
* *
41107641 TGCATCCTGCTTGAAGCGTTTTT-ACCACTATTTGCGCAGACACGTTTTCTCAAAATTATTT
66 TGCATCCTGCTTGAAGCGTTTTTGA-CACTATTTGCACAGACACGTCTTCTCAAAATTATTT
* * * * * **
41107702 TTTCAGAGACTATTATAGCAAAATAGCATCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGGCAA
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
* *
41107767 TGCATCCTGCTTGAAGCGTTTTTTACACTATTTGCACAGACACGTCTTCTAAAAATTA-TT
66 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGCACAGACACGTCTTCTCAAAATTATTT
* * *
41107827 TTTCAGATACTATTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAA
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
*
41107892 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGCACAGACACGTCTTCTCAAATTTATTT
66 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGCACAGACACGTCTTCTCAAAATTATTT
41107953 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGT
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGT
41107988 AGAAGCTTTT
Statistics
Matches: 379, Mismatches: 30, Indels: 6
0.91 0.07 0.01
Matches are distributed among these distances:
125 117 0.31
126 261 0.69
127 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (126 bp):
TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGCACAGACACGTCTTCTCAAAATTATTT
Found at i:41107953 original size:251 final size:252
Alignment explanation
Indices: 41107450--41107995 Score: 835
Period size: 251 Copynumber: 2.2 Consensus size: 252
41107440 GCCCAAGTTA
* * * *
41107450 TTTCAGAAACCACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
1 TTTCAGAGACTACTATAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGAAAA
** *
41107515 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTATGCAGACACGTCTTCTCAAAATTATTTTTTC
66 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTACACAGACACGTCTTCTAAAAATTATTTTTTC
41107580 AGAGACCACTGTAGCAAAAGAGCATCCACGTGGGAGCTTCTTCCAGTAATTTTGCTGAAAATGCA
131 AGAGACCACTGTAGCAAAAGAGCATCCACGTGGGAGCTTCTTCCAGTAATTTTGCTGAAAATGCA
* *
41107645 TCCTGCTTGAAGCGTTTTTACCACTATTTGCGCAGACACGTTTTCTCAAAATTATTT
196 TCCTGCTTGAAGCGTTTTTACCACTATTTGCACAGACACGTCTTCTCAAAATTATTT
* * * **
41107702 TTTCAGAGACTATTATAGCAAAATAGCATCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGGCAA
1 TTTCAGAGACTACTATAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGAAAA
* *
41107767 TGCATCCTGCTTGAAGCGTTTTTTACACTATTTGCACAGACACGTCTTCTAAAAATTA-TTTTTC
66 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTACACAGACACGTCTTCTAAAAATTATTTTTTC
* * * * * * *
41107831 AGATACTATTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAATGCA
131 AGAGACCACTGTAGCAAAAGAGCATCCACGTGGGAGCTTCTTCCAGTAATTTTGCTGAAAATGCA
*
41107896 TCCTGCTTGAAGCGTTTTTGA-CACTATTTGCACAGACACGTCTTCTCAAATTTATTT
196 TCCTGCTTGAAGCGTTTTT-ACCACTATTTGCACAGACACGTCTTCTCAAAATTATTT
* *
41107953 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTAGAAGCTT
1 TTTCAGAGACTACTATAGCAAAAGAGCGTCCACGTGGAAGCTT
41107996 TTTTAGATTA
Statistics
Matches: 264, Mismatches: 29, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
251 154 0.58
252 110 0.42
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.33
Consensus pattern (252 bp):
TTTCAGAGACTACTATAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGAAAA
TGCATCCTGCTTGAAGCGTTTTTGACACTATTTACACAGACACGTCTTCTAAAAATTATTTTTTC
AGAGACCACTGTAGCAAAAGAGCATCCACGTGGGAGCTTCTTCCAGTAATTTTGCTGAAAATGCA
TCCTGCTTGAAGCGTTTTTACCACTATTTGCACAGACACGTCTTCTCAAAATTATTT
Found at i:41108249 original size:95 final size:98
Alignment explanation
Indices: 41108104--41108278 Score: 241
Period size: 95 Copynumber: 1.8 Consensus size: 98
41108094 CCTAAAATCC
* * ** * *
41108104 TAATCTATTTTTTTTAAAATTTATAATTAATTTACTCAAGTAACCCTAAACCCTAATTTATTTGA
1 TAATCTATATTTTTTAAAATTTATAATTAATTTAATCAACAAACACTAAACCCTAATTTATTTAA
41108169 -TTTTTTCCTTAAAAACCATAAACACTAAACCA
66 TTTTTTTCCTTAAAAACCATAAACACTAAACCA
* *
41108201 TAATCTA-ATTTTTT-AAA-TTAGTAATTAATTTAATTAACAAACACTAAACCTTAATTTATTTA
1 TAATCTATATTTTTTAAAATTTA-TAATTAATTTAATCAACAAACACTAAACCCTAATTTATTTA
41108263 ATTTTTTTCCTTAAAA
65 ATTTTTTTCCTTAAAA
41108279 CCCTAAAATT
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
94 3 0.04
95 38 0.56
96 20 0.29
97 7 0.10
ACGTcount: A:0.40, C:0.14, G:0.02, T:0.44
Consensus pattern (98 bp):
TAATCTATATTTTTTAAAATTTATAATTAATTTAATCAACAAACACTAAACCCTAATTTATTTAA
TTTTTTTCCTTAAAAACCATAAACACTAAACCA
Found at i:41108296 original size:16 final size:17
Alignment explanation
Indices: 41108275--41108316 Score: 61
Period size: 16 Copynumber: 2.6 Consensus size: 17
41108265 TTTTTTCCTT
41108275 AAAACCCTAAAATT-TA
1 AAAACCCTAAAATTCTA
*
41108291 AAAACCC-AAAATTCTC
1 AAAACCCTAAAATTCTA
41108307 AAAACCCTAA
1 AAAACCCTAA
41108317 CCTTAATTGC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 6 0.26
16 15 0.65
17 2 0.09
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (17 bp):
AAAACCCTAAAATTCTA
Found at i:41116660 original size:48 final size:48
Alignment explanation
Indices: 41116541--41116709 Score: 146
Period size: 48 Copynumber: 3.6 Consensus size: 48
41116531 TGATATGTGT
* * ** *
41116541 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-A-TTACGA-GA
1 GCTAGTGTAACACATGTCTGGGACATGCATCGGCCTCGAGAGAC-ACAA
* * * ** * * *
41116587 GCCAATGTAAAACATGTCTCAGACATGTATCGGCTTTGAGAGACACAA
1 GCTAGTGTAACACATGTCTGGGACATGCATCGGCCTCGAGAGACACAA
** * *
41116635 GCTAGTGTAGGACATGTCTGGGACATGCATCGGCCTCGAGATATACAA
1 GCTAGTGTAACACATGTCTGGGACATGCATCGGCCTCGAGAGACACAA
*
41116683 GCTAGTGTAACACCTGTCTGGGACATG
1 GCTAGTGTAACACATGTCTGGGACATG
41116710 GAATCGACAC
Statistics
Matches: 94, Mismatches: 26, Indels: 4
0.76 0.21 0.03
Matches are distributed among these distances:
46 28 0.30
47 2 0.02
48 64 0.68
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (48 bp):
GCTAGTGTAACACATGTCTGGGACATGCATCGGCCTCGAGAGACACAA
Found at i:41116790 original size:49 final size:48
Alignment explanation
Indices: 41116633--41116805 Score: 138
Period size: 49 Copynumber: 3.5 Consensus size: 48
41116623 TGAGAGACAC
* * *
41116633 AAGCTAGTGTAGGACATGTCTGGGACATG-CATCGGCCTCGAGATAT-A
1 AAGC-AGTGTAAGACATGTCTGGGACACGACATCGGCCTCGATATATGA
* * * * *
41116680 CAAGCTAGTGTAACACCTGTCTGGGACATGGA-ATCGACAC-CGATAGATGA
1 -AAGC-AGTGTAAGACATGTCTGGGACA-CGACATCGGC-CTCGATATATGA
* * * *
41116730 GAGCCAATGTAAGACCTGTCTGGGACACGACATCGGCCTCAATATATGA
1 AAG-CAGTGTAAGACATGTCTGGGACACGACATCGGCCTCGATATATGA
*
41116779 AAGTCAGTGTAAGACATGTCTAGGACA
1 AAG-CAGTGTAAGACATGTCTGGGACA
41116806 TGGCATCAAC
Statistics
Matches: 99, Mismatches: 19, Indels: 13
0.76 0.15 0.10
Matches are distributed among these distances:
48 27 0.27
49 69 0.70
50 3 0.03
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.21
Consensus pattern (48 bp):
AAGCAGTGTAAGACATGTCTGGGACACGACATCGGCCTCGATATATGA
Found at i:41124467 original size:94 final size:94
Alignment explanation
Indices: 41124347--41124519 Score: 276
Period size: 94 Copynumber: 1.8 Consensus size: 94
41124337 ACCACATTAT
41124347 GAGAGCCAGTGTAAGACATGTCTGGGACAGGCA-TAGGCCTCGAGAGACACAAGCTAGTGTAAGA
1 GAGAGCCAGTGTAAGACATGTCTGGGACAGGCATTA-GCCTCGAGAGACACAAGCTAGTGTAAGA
41124411 CATGTTTGGGACATGTATCAGTATTGAAAC
65 CATGTTTGGGACATGTATCAGTATTGAAAC
* * * * *
41124441 GAGAGCTAGTGTAAGACATGTGTGGGACATGCATTAGCCTCGAGATATACAAGCTAGTGTAAGAC
1 GAGAGCCAGTGTAAGACATGTCTGGGACAGGCATTAGCCTCGAGAGACACAAGCTAGTGTAAGAC
*
41124506 CTGTTTGGGACATG
66 ATGTTTGGGACATG
41124520 CGTCTGTAAC
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
94 70 0.97
95 2 0.03
ACGTcount: A:0.31, C:0.16, G:0.30, T:0.23
Consensus pattern (94 bp):
GAGAGCCAGTGTAAGACATGTCTGGGACAGGCATTAGCCTCGAGAGACACAAGCTAGTGTAAGAC
ATGTTTGGGACATGTATCAGTATTGAAAC
Found at i:41124515 original size:48 final size:46
Alignment explanation
Indices: 41124354--41124520 Score: 169
Period size: 48 Copynumber: 3.5 Consensus size: 46
41124344 TATGAGAGCC
* *
41124354 AGTGTAAGACATGTCTGGGACAGGCA-TAGGCCTCGAGAGACACAAGCT
1 AGTGTAAGACATGTTTGGGACATGCATTA-GCCTCGAGA-A-ACAAGCT
* * ***
41124402 AGTGTAAGACATGTTTGGGACATGTATCAG--TATTGAAACGAGAGCT
1 AGTGTAAGACATGTTTGGGACATGCATTAGCCTCGAGAAAC-A-AGCT
*
41124448 AGTGTAAGACATGTGTGGGACATGCATTAGCCTCGAGATATACAAGCT
1 AGTGTAAGACATGTTTGGGACATGCATTAGCCTCGAGA-A-ACAAGCT
*
41124496 AGTGTAAGACCTGTTTGGGACATGC
1 AGTGTAAGACATGTTTGGGACATGC
41124521 GTCTGTAACA
Statistics
Matches: 97, Mismatches: 15, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
44 2 0.02
45 2 0.02
46 34 0.35
48 54 0.56
49 3 0.03
50 2 0.02
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTTTGGGACATGCATTAGCCTCGAGAAACAAGCT
Found at i:41125691 original size:23 final size:21
Alignment explanation
Indices: 41125619--41125693 Score: 69
Period size: 21 Copynumber: 3.5 Consensus size: 21
41125609 CCTGATCAGT
** *
41125619 ATACGACACATAAAGTGCCTA
1 ATACGACACACGAGGTGCCTA
* * *
41125640 AAACTACGCACGAGGTGCCTA
1 ATACGACACACGAGGTGCCTA
*
41125661 ATATGACACACGAGGTGCCTGAA
1 ATACGACACACGAGGTGCCT--A
41125684 ATACGACACA
1 ATACGACACA
41125694 TAAAGTGCCT
Statistics
Matches: 41, Mismatches: 11, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
21 31 0.76
23 10 0.24
ACGTcount: A:0.39, C:0.25, G:0.20, T:0.16
Consensus pattern (21 bp):
ATACGACACACGAGGTGCCTA
Found at i:41125701 original size:23 final size:23
Alignment explanation
Indices: 41125619--41125705 Score: 67
Period size: 23 Copynumber: 4.0 Consensus size: 23
41125609 CCTGATCAGT
*
41125619 ATACGACACATAAAGTGCCTAAA
1 ATACGACACATAAAGTGCCTGAA
* *
41125642 ACTACG-CAC--GAGGTGCCT--A
1 A-TACGACACATAAAGTGCCTGAA
* ** *
41125661 ATATGACACACGAGGTGCCTGAA
1 ATACGACACATAAAGTGCCTGAA
41125684 ATACGACACATAAAGTGCCTGA
1 ATACGACACATAAAGTGCCTGA
41125706 TCAGTAAAGC
Statistics
Matches: 51, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
18 3 0.06
19 5 0.10
21 16 0.31
23 23 0.45
24 4 0.08
ACGTcount: A:0.38, C:0.24, G:0.21, T:0.17
Consensus pattern (23 bp):
ATACGACACATAAAGTGCCTGAA
Found at i:41127688 original size:49 final size:49
Alignment explanation
Indices: 41127634--41127810 Score: 157
Period size: 49 Copynumber: 3.6 Consensus size: 49
41127624 TGTTGTGTGT
*
41127634 CAGTGTAAGACTTGTTTGGGACATGGCATCGACAC-CGATAGAT-GAGAGC
1 CAGTGTAAGACTTGTCTGGGACATGGCATCGAC-CTCGATAGATGGA-AGC
* * * *
41127683 CAGTGTAAGACCTATCTGGGACATGGCATC-AGCCTCGATATATGGAAGT
1 CAGTGTAAGACTTGTCTGGGACATGGCATCGA-CCTCGATAGATGGAAGC
* * * * **
41127732 TAGTGTAAGACTTGTCTAGGACATGGCATCGACTTTGAT-G-TGCTAGC
1 CAGTGTAAGACTTGTCTGGGACATGGCATCGACCTCGATAGATGGAAGC
* * *
41127779 TAGTGTAAGACCATGTCTAGGACATGGCATCG
1 CAGTGTAAGA-CTTGTCTGGGACATGGCATCG
41127811 GCATCTTATT
Statistics
Matches: 107, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
47 14 0.13
48 22 0.21
49 68 0.64
50 3 0.03
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (49 bp):
CAGTGTAAGACTTGTCTGGGACATGGCATCGACCTCGATAGATGGAAGC
Found at i:41129323 original size:169 final size:169
Alignment explanation
Indices: 41129044--41129379 Score: 654
Period size: 169 Copynumber: 2.0 Consensus size: 169
41129034 TCCACATGGG
41129044 CGTATGCCCCTATCTCGAGTTACATTTTTTTAAAGTCTTTAAAGATGTTAAGTTTAATCCCGGAT
1 CGTATGCCCCTATCTCGAGTTACATTTTTTTAAAGTCTTTAAAGATGTTAAGTTTAATCCCGGAT
41129109 AGTTTCCCAAGGATGATTTGGGCCTTGTAGGCTCGTATTGAGAATTTTTAGATTAAGAGCGAAAA
66 AGTTTCCCAAGGATGATTTGGGCCTTGTAGGCTCGTATTGAGAATTTTTAGATTAAGAGCGAAAA
*
41129174 GTTTTAAATTTGATCTAGTTTTTATAACTCAGAAATGTT
131 GTTTTAAATTTGATCTAGTTTTTATAACTCACAAATGTT
*
41129213 CGTATGCCCCTATCTCGAGTTACATTTTTTTAAAGTCTTTAAAGATGTTCAGTTTAATCCCGGAT
1 CGTATGCCCCTATCTCGAGTTACATTTTTTTAAAGTCTTTAAAGATGTTAAGTTTAATCCCGGAT
41129278 AGTTTCCCAAGGATGATTTGGGCCTTGTAGGCTCGTATTGAGAATTTTTAGATTAAGAGCGAAAA
66 AGTTTCCCAAGGATGATTTGGGCCTTGTAGGCTCGTATTGAGAATTTTTAGATTAAGAGCGAAAA
41129343 GTTTTAAATTTGATCTAGTTTTTATAACTCACAAATG
131 GTTTTAAATTTGATCTAGTTTTTATAACTCACAAATG
41129380 ATCGAATACA
Statistics
Matches: 165, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
169 165 1.00
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.39
Consensus pattern (169 bp):
CGTATGCCCCTATCTCGAGTTACATTTTTTTAAAGTCTTTAAAGATGTTAAGTTTAATCCCGGAT
AGTTTCCCAAGGATGATTTGGGCCTTGTAGGCTCGTATTGAGAATTTTTAGATTAAGAGCGAAAA
GTTTTAAATTTGATCTAGTTTTTATAACTCACAAATGTT
Found at i:41135087 original size:26 final size:26
Alignment explanation
Indices: 41135048--41135131 Score: 75
Period size: 26 Copynumber: 3.3 Consensus size: 26
41135038 AGTAGTTCCA
**
41135048 AGTGAAACAAGGTGTATAGAAGCTTT
1 AGTGAAACGGGGTGTATAGAAGCTTT
* * *
41135074 AGTGAAACGGGGTGTTTTG-A-TTTT
1 AGTGAAACGGGGTGTATAGAAGCTTT
* **
41135098 AGTGAAA-TGGGCATATAGAAGCTTT
1 AGTGAAACGGGGTGTATAGAAGCTTT
41135123 AGTGAAACG
1 AGTGAAACG
41135132 AAGCATTTTG
Statistics
Matches: 43, Mismatches: 12, Indels: 6
0.70 0.20 0.10
Matches are distributed among these distances:
23 6 0.14
24 11 0.26
25 11 0.26
26 15 0.35
ACGTcount: A:0.33, C:0.07, G:0.30, T:0.30
Consensus pattern (26 bp):
AGTGAAACGGGGTGTATAGAAGCTTT
Found at i:41136555 original size:15 final size:16
Alignment explanation
Indices: 41136526--41136555 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
41136516 TTGAAAAAGT
41136526 TTTCAAATATATTTGG
1 TTTCAAATATATTTGG
41136542 TTTCAAAT-TATTTG
1 TTTCAAATATATTTG
41136556 CTCTATCACG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.30, C:0.07, G:0.10, T:0.53
Consensus pattern (16 bp):
TTTCAAATATATTTGG
Found at i:41136838 original size:13 final size:13
Alignment explanation
Indices: 41136822--41136846 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
41136812 TTTTTTTTTT
41136822 TAAATTAAATTTC
1 TAAATTAAATTTC
41136835 TAAATTAAATTT
1 TAAATTAAATTT
41136847 AATTTCAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (13 bp):
TAAATTAAATTTC
Found at i:41137600 original size:3 final size:3
Alignment explanation
Indices: 41137592--41137619 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
41137582 GGTGGAAATG
41137592 AGA AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA A
41137620 TGCATTTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:41140962 original size:23 final size:23
Alignment explanation
Indices: 41140934--41140981 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
41140924 TTAACAAGTA
41140934 AAAACTCATTCTAACAAAACATC
1 AAAACTCATTCTAACAAAACATC
41140957 AAAACTCATTCTAACAAAACATC
1 AAAACTCATTCTAACAAAACATC
41140980 AA
1 AA
41140982 TCAATTTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.54, C:0.25, G:0.00, T:0.21
Consensus pattern (23 bp):
AAAACTCATTCTAACAAAACATC
Found at i:41142515 original size:24 final size:24
Alignment explanation
Indices: 41142485--41142575 Score: 128
Period size: 24 Copynumber: 3.8 Consensus size: 24
41142475 ATTGACATTT
41142485 AAATCCGCACACATAGTGCTATAC
1 AAATCCGCACACATAGTGCTATAC
* *
41142509 AAGTCCGCACACATAGTGCCATAC
1 AAATCCGCACACATAGTGCTATAC
* * *
41142533 AATTTCGCACACATAGTGCTATTC
1 AAATCCGCACACATAGTGCTATAC
*
41142557 AAATTCGCACACATAGTGC
1 AAATCCGCACACATAGTGC
41142576 CGAAGTCAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 60 1.00
ACGTcount: A:0.34, C:0.29, G:0.14, T:0.23
Consensus pattern (24 bp):
AAATCCGCACACATAGTGCTATAC
Found at i:41142942 original size:11 final size:10
Alignment explanation
Indices: 41142921--41142946 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
41142911 TAAAACTTGA
41142921 TTTTTTATTT
1 TTTTTTATTT
41142931 TTTTTTATTT
1 TTTTTTATTT
41142941 TTTTTT
1 TTTTTT
41142947 CACCTTAGGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (10 bp):
TTTTTTATTT
Found at i:41143050 original size:10 final size:10
Alignment explanation
Indices: 41143035--41143061 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
41143025 AAAACACCTA
41143035 TATATATATG
1 TATATATATG
41143045 TATATATATG
1 TATATATATG
41143055 TATATAT
1 TATATAT
41143062 GGTAACCACC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (10 bp):
TATATATATG
Done.