Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 129 of 356
Found at i:41144170 original size:30 final size:30
Alignment explanation
Indices: 41144134--41144193 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
41144124 TTTGAACCGA
*
41144134 ATCATACAACATCTTAGTGTCCCTATTATG
1 ATCATACAACATCATAGTGTCCCTATTATG
41144164 ATCATACAACATCATAGTGTCCCTATTATG
1 ATCATACAACATCATAGTGTCCCTATTATG
41144194 GGCCTACGGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.32, C:0.23, G:0.10, T:0.35
Consensus pattern (30 bp):
ATCATACAACATCATAGTGTCCCTATTATG
Found at i:41185570 original size:25 final size:22
Alignment explanation
Indices: 41185524--41185570 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
41185514 CATCTCAATT
*
41185524 CACATATTCACAAACACATAAG
1 CACATATTCACAAAAACATAAG
41185546 CACATAGTTCACAAGATAACATAAG
1 CACATA-TTCACAA-A-AACATAAG
41185571 TATGAGAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 7 0.33
24 1 0.05
25 7 0.33
ACGTcount: A:0.49, C:0.23, G:0.09, T:0.19
Consensus pattern (22 bp):
CACATATTCACAAAAACATAAG
Found at i:41188060 original size:28 final size:28
Alignment explanation
Indices: 41188022--41188203 Score: 294
Period size: 28 Copynumber: 6.5 Consensus size: 28
41188012 TAAATTGTAC
*
41188022 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
41188050 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
41188078 AGCACTAAGTGTGCGAATTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
41188106 AGCACTAGGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
41188134 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
41188162 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
41188189 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
41188204 GACTTAATAT
Statistics
Matches: 147, Mismatches: 7, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
27 24 0.16
28 123 0.84
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:41194932 original size:71 final size:70
Alignment explanation
Indices: 41194782--41194942 Score: 196
Period size: 71 Copynumber: 2.3 Consensus size: 70
41194772 TGAGCCTATG
* * * * * *
41194782 GGCCACACGGGCGTGCGGGTTTTTGGGCTATGCCGTGTGGGCCACACGGGTAAGGCAAATCTGGT
1 GGCCACACGGGCGTGTGGGGTTTTGAGCTAGGCCGTATGGGCCACACAGGTAAGGCAAATCTGGT
*
41194847 TGTGT
66 TGTAT
* * * *
41194852 GTGCTACACGGGTGTGTGGGGTTTTGAGCTAGGCTGTATGGGCCACACAGGTAAGGCCAATCTGG
1 G-GCCACACGGGCGTGTGGGGTTTTGAGCTAGGCCGTATGGGCCACACAGGTAAGGCAAATCTGG
41194917 TTGTAT
65 TTGTAT
*
41194923 AGGCCACACGAGCGTGTGGG
1 -GGCCACACGGGCGTGTGGG
41194943 CCCAAACAGG
Statistics
Matches: 75, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
70 1 0.01
71 73 0.97
72 1 0.01
ACGTcount: A:0.17, C:0.20, G:0.39, T:0.24
Consensus pattern (70 bp):
GGCCACACGGGCGTGTGGGGTTTTGAGCTAGGCCGTATGGGCCACACAGGTAAGGCAAATCTGGT
TGTAT
Found at i:41198440 original size:19 final size:21
Alignment explanation
Indices: 41198418--41198457 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
41198408 CGTTCTGGCA
*
41198418 GCCTCGCTACA-A-TCTGGTG
1 GCCTCGCCACATACTCTGGTG
41198437 GCCTCGCCACATACTCTGGTG
1 GCCTCGCCACATACTCTGGTG
41198458 ACTTCGTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 10 0.56
20 1 0.06
21 7 0.39
ACGTcount: A:0.15, C:0.35, G:0.25, T:0.25
Consensus pattern (21 bp):
GCCTCGCCACATACTCTGGTG
Found at i:41205894 original size:27 final size:26
Alignment explanation
Indices: 41205850--41205901 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
41205840 CTCGCTGCAA
*
41205850 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
41205877 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
41205902 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:41209684 original size:29 final size:29
Alignment explanation
Indices: 41209649--41209722 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
41209639 GTTGTGAGAT
* *
41209649 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
41209678 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
41209707 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
41209723 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:41210163 original size:42 final size:40
Alignment explanation
Indices: 41210033--41210230 Score: 154
Period size: 40 Copynumber: 4.9 Consensus size: 40
41210023 TCGAATGATG
** *
41210033 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* ** * *
41210073 TCCGGACTAAGAT-CCGAAG-GCATTGGTG-TGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCATGCT-AGTGA-TATA
*
41210113 TCCGGGCTAAGTCCCGAAGAGCATTTTCATGCTAGTGATTTA
1 TCCGGGCTAAGTCCCGAAGAGCA--TTCATGCTAGTGATATA
* *
41210155 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * * * *
41210195 TCCGTGCTAAATCCCAAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
41210231 CGTGTATTCG
Statistics
Matches: 129, Mismatches: 22, Indels: 14
0.78 0.13 0.08
Matches are distributed among these distances:
39 1 0.01
40 86 0.67
41 9 0.07
42 24 0.19
43 8 0.06
44 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:41210198 original size:82 final size:82
Alignment explanation
Indices: 41210033--41210217 Score: 193
Period size: 82 Copynumber: 2.3 Consensus size: 82
41210023 TCGAATGATG
*
41210033 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGAGCATTTATGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCAT
* *
41210096 TGGTGTGAGTTACTAAA
66 TCGTGTGAGTGACTAAA
** * *
41210113 TCCGGGCTAAGTCCCGAAGAGCATTTTCATGCT-AGTGA-TTTATCCGGGCTAAGTTCCGAAGAG
1 TCCGGGCTAAGTCCCGAAGAGCA-TTT-ATGCTAAGTGACCATATCCGGACTAAGATCCGAAG-G
*
41210176 CATTCGTGCT-AGTGA-TATA
63 CATTCGTG-TGAGTGACTAAA
* * *
41210195 TCCGTGCTAAATCCCAAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCA
41210218 ATCATGCTGG
Statistics
Matches: 88, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
80 19 0.22
81 2 0.02
82 42 0.48
83 20 0.23
84 5 0.06
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.26
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGAGCATTTATGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCAT
TCGTGTGAGTGACTAAA
Found at i:41213660 original size:47 final size:47
Alignment explanation
Indices: 41213599--41214136 Score: 869
Period size: 47 Copynumber: 11.4 Consensus size: 47
41213589 CAGCCAAGAC
*
41213599 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
41213646 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
41213693 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
41213740 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGATTGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* * *
41213789 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGATTGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
41213836 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
41213883 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
41213930 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
41213977 AGTGTATATATGTAATAAAGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
41214024 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* * * * * * * *
41214071 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
41214118 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
41214137 TCCCGAAGGG
Statistics
Matches: 464, Mismatches: 25, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 419 0.90
49 45 0.10
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
Found at i:41214311 original size:37 final size:37
Alignment explanation
Indices: 41214255--41214333 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
41214245 CCGAGCTCTA
* *
41214255 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
41214292 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
41214329 AAGAC
1 AAGAC
41214334 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:41218971 original size:32 final size:32
Alignment explanation
Indices: 41218921--41218983 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
41218911 CACACGGGCT
41218921 AGGCCAAGCTGAGCGTGTAGGCCACATGGGTA
1 AGGCCAAGCTGAGCGTGTAGGCCACATGGGTA
*
41218953 AGGCCAATCTG-GCTGTGTAGGCCACATGGGT
1 AGGCCAAGCTGAGC-GTGTAGGCCACATGGGT
41218984 GTGTGGGCCC
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 2 0.07
32 27 0.93
ACGTcount: A:0.22, C:0.22, G:0.37, T:0.19
Consensus pattern (32 bp):
AGGCCAAGCTGAGCGTGTAGGCCACATGGGTA
Found at i:41222718 original size:49 final size:49
Alignment explanation
Indices: 41222637--41222759 Score: 133
Period size: 49 Copynumber: 2.5 Consensus size: 49
41222627 CTTGTTGTGT
*** * *
41222637 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACAC-CGATAGATGAGA
1 GTCAGTGTAAGACCTGTCTGGGACACAACATCGAC-CTCAATAGATGAAA
* * *
41222686 G-CTAGTGTAAGACCTGTCTGGGATACAACATCGGCCTCAATATATGAAA
1 GTC-AGTGTAAGACCTGTCTGGGACACAACATCGACCTCAATAGATGAAA
*
41222735 GTCAGTGTAAGACCTCTCTGGGACA
1 GTCAGTGTAAGACCTGTCTGGGACA
41222760 TGATATCAAC
Statistics
Matches: 61, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
48 2 0.03
49 58 0.95
50 1 0.02
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (49 bp):
GTCAGTGTAAGACCTGTCTGGGACACAACATCGACCTCAATAGATGAAA
Found at i:41232305 original size:31 final size:31
Alignment explanation
Indices: 41232267--41232329 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
41232257 CCTATATTGT
*
41232267 AGTAAACATGTATCTGTTTTCTGTTTATTTG
1 AGTAAACATGTATCTGTTTTCTATTTATTTG
* *
41232298 AGTAAACATGTATTTTTTTTCTATTTATTTG
1 AGTAAACATGTATCTGTTTTCTATTTATTTG
41232329 A
1 A
41232330 ATAATGAGTA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.08, G:0.13, T:0.54
Consensus pattern (31 bp):
AGTAAACATGTATCTGTTTTCTATTTATTTG
Found at i:41232322 original size:27 final size:32
Alignment explanation
Indices: 41232258--41232328 Score: 81
Period size: 31 Copynumber: 2.2 Consensus size: 32
41232248 GGAATTATGC
41232258 CTATATTGTAGTAAACATGTATCTGTTTTCTGT
1 CTAT-TTGTAGTAAACATGTATCTGTTTTCTGT
* * * *
41232291 TTATTTG-AGTAAACATGTATTTTTTTTCTAT
1 CTATTTGTAGTAAACATGTATCTGTTTTCTGT
*
41232322 TTATTTG
1 CTATTTG
41232329 AATAATGAGT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
31 28 0.82
32 3 0.09
33 3 0.09
ACGTcount: A:0.24, C:0.08, G:0.13, T:0.55
Consensus pattern (32 bp):
CTATTTGTAGTAAACATGTATCTGTTTTCTGT
Found at i:41234535 original size:42 final size:42
Alignment explanation
Indices: 41234488--41234571 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
41234478 TTATATTTAG
41234488 GCAAGATAGTGCATTTATATAATTGACCATTTAGGTAGTTTT
1 GCAAGATAGTGCATTTATATAATTGACCATTTAGGTAGTTTT
41234530 GCAAGATAGTGCATTTATATAATTGACCATTTAGGTAGTTTT
1 GCAAGATAGTGCATTTATATAATTGACCATTTAGGTAGTTTT
41234572 TAGAGGTGAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (42 bp):
GCAAGATAGTGCATTTATATAATTGACCATTTAGGTAGTTTT
Found at i:41238812 original size:56 final size:55
Alignment explanation
Indices: 41238698--41238882 Score: 264
Period size: 56 Copynumber: 3.3 Consensus size: 55
41238688 TCGTAAACAC
* *
41238698 ATATCAGAATCACATATCGATGCCAACGTA-TGAATGTGGACTTACTCCCACACAT
1 ATATCA-AATCACATATCGATGCCAACGTATTAAACGTGGACTTACTCCCACACAT
41238753 ATATCGAAATCACATATCGATGCCAACGTATTAAACGTGGACTTACTCCCACACAT
1 ATATC-AAATCACATATCGATGCCAACGTATTAAACGTGGACTTACTCCCACACAT
* * * *
41238809 ATATCAGAATCACATATCGATGCCAGCGTATTAAACGTGGTCTTACTCGCACATAT
1 ATATCA-AATCACATATCGATGCCAACGTATTAAACGTGGACTTACTCCCACACAT
*
41238865 ATATTAAAGTCACATATC
1 ATATCAAA-TCACATATC
41238883 TATTCCACAT
Statistics
Matches: 119, Mismatches: 7, Indels: 7
0.89 0.05 0.05
Matches are distributed among these distances:
55 31 0.26
56 88 0.74
ACGTcount: A:0.35, C:0.24, G:0.14, T:0.27
Consensus pattern (55 bp):
ATATCAAATCACATATCGATGCCAACGTATTAAACGTGGACTTACTCCCACACAT
Found at i:41250893 original size:27 final size:27
Alignment explanation
Indices: 41250863--41250914 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
41250853 GTTTATAAGT
*
41250863 TTTTAAAATTTATGTTTTAATGTGTGA
1 TTTTAAAATTTATATTTTAATGTGTGA
41250890 TTTTAAAATTTATATTTTAATGTGT
1 TTTTAAAATTTATATTTTAATGTGT
41250915 AAGGATTGTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.58
Consensus pattern (27 bp):
TTTTAAAATTTATATTTTAATGTGTGA
Found at i:41254197 original size:23 final size:24
Alignment explanation
Indices: 41254169--41254231 Score: 76
Period size: 24 Copynumber: 2.6 Consensus size: 24
41254159 TTTATGTATT
*
41254169 ATATTATATATA-AT-TGTTTTTTC
1 ATATTATATATATATGTG-TTTTTA
41254192 ATATTATATATATATGTGTTTTTA
1 ATATTATATATATATGTGTTTTTA
*
41254216 ATATTATGTTATATAT
1 ATATTAT-ATATATAT
41254232 ATTATGTATA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
23 12 0.34
24 14 0.40
25 9 0.26
ACGTcount: A:0.33, C:0.02, G:0.06, T:0.59
Consensus pattern (24 bp):
ATATTATATATATATGTGTTTTTA
Found at i:41266553 original size:86 final size:86
Alignment explanation
Indices: 41266442--41266885 Score: 430
Period size: 86 Copynumber: 5.2 Consensus size: 86
41266432 CTGTTTGTCA
* *
41266442 AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATGTCAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATGTCAATTTCT
41266507 GTCTTTAATTTCTACTTTTCC
66 GTCTTTAATTTCTACTTTTCC
41266528 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATGTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATGTCAATTTCT
41266593 GTCTTTAATTTCTACTTTTCC
66 GTCTTTAATTTCTACTTTTCC
* * * * * *
41266614 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACACTGAGGTATTTTCAATTTCC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATGTCAATTTCT
* * * *
41266679 GT-TTTCCAACTTATGCTTTTCAAAA
66 GTCTTT--AATTTCTACTTTTC---C
* * * * * * *
41266704 AAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCACACTGAGGTATTGT-TAGTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTAATGTCAATTT
* * **
41266768 -TAT-ATT--TTTC-A-----AA
64 CTGTCTTTAATTTCTACTTTTCC
* * *
41266781 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GAGCACACTGAGGTATTTTCAATTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA-CACGCTGAGGTAATGTCAATTTC
* *
41266845 TG-CTTTTCAATTTCTATTTTTCAA
65 TGTC-TTT-AATTTCTACTTTTC-C
41266869 AATAATCAACTCATATT
1 AA-AATCAACTCATATT
41266886 TCGATTTACA
Statistics
Matches: 301, Mismatches: 34, Indels: 43
0.80 0.09 0.11
Matches are distributed among these distances:
75 15 0.05
76 4 0.01
77 38 0.13
78 2 0.01
81 4 0.01
82 1 0.00
85 3 0.01
86 147 0.49
87 11 0.04
88 3 0.01
89 14 0.05
90 40 0.13
91 3 0.01
92 16 0.05
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.34
Consensus pattern (86 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATGTCAATTTCT
GTCTTTAATTTCTACTTTTCC
Found at i:41266853 original size:75 final size:77
Alignment explanation
Indices: 41266689--41266854 Score: 230
Period size: 77 Copynumber: 2.2 Consensus size: 77
41266679 GTTTTCCAAC
* * *
41266689 TTATGCTTTTCAAAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCACACTG
1 TTATGCTTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGTAGCACACTG
*
41266754 AGGTATTGTTAGT
65 AGGTATTGTTAAT
**
41266767 TTATATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AG-AGCACACTGA
1 TTATGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGTAGCACACTGA
41266830 GGTATT-TTCAAT
66 GGTATTGTT-AAT
*
41266842 TTCTGCTTTTCAA
1 TTATGCTTTTCAA
41266855 TTTCTATTTT
Statistics
Matches: 78, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
74 2 0.03
75 27 0.35
76 1 0.01
77 39 0.50
78 9 0.12
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (77 bp):
TTATGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGTAGCACACTGA
GGTATTGTTAAT
Found at i:41266865 original size:14 final size:14
Alignment explanation
Indices: 41266834--41266868 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
41266824 CACTGAGGTA
*
41266834 TTTTCAATTTCTGC
1 TTTTCAATTTCTAC
*
41266848 TTTTCAATTTCTAT
1 TTTTCAATTTCTAC
41266862 TTTTCAA
1 TTTTCAA
41266869 AATAATCAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.20, C:0.17, G:0.03, T:0.60
Consensus pattern (14 bp):
TTTTCAATTTCTAC
Found at i:41269432 original size:93 final size:93
Alignment explanation
Indices: 41269264--41269435 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
41269254 CGCCCATAAG
* * * *
41269264 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCACATCCATAAGTGAACTCAGACTCAACTCA
* *
41269329 ATGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
* *
41269357 CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCACATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCACATCCATAAGTGAACTCAGACTCAACTCA
41269422 ACGAGCTCGGATGC
66 ACGAGCTCGGATGC
41269436 TCAACCATCC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCACATCCATAAGTGAACTCAGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:41269451 original size:46 final size:46
Alignment explanation
Indices: 41269257--41269438 Score: 181
Period size: 46 Copynumber: 3.9 Consensus size: 46
41269247 TGTAACCCGC
* * * *
41269257 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCACAT
* * * * * *
41269303 CCATGAGTGAACTCAGACTCAACTCAATGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACG-C---TCACAT
* * *
41269353 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCACAT
*
41269396 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCA
41269439 ACCATCCTAG
Statistics
Matches: 109, Mismatches: 20, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
43 5 0.05
44 1 0.01
45 2 0.02
46 66 0.61
47 28 0.26
48 2 0.02
49 1 0.01
50 4 0.04
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCACAT
Found at i:41271613 original size:12 final size:12
Alignment explanation
Indices: 41271596--41271628 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
41271586 TATTATTTTG
41271596 TTCTTTTTCTTC
1 TTCTTTTTCTTC
*
41271608 TTCTTTTTGTTC
1 TTCTTTTTCTTC
41271620 TT-TTTTTCT
1 TTCTTTTTCT
41271629 ACTCATACGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 6 0.32
12 13 0.68
ACGTcount: A:0.00, C:0.18, G:0.03, T:0.79
Consensus pattern (12 bp):
TTCTTTTTCTTC
Found at i:41272395 original size:22 final size:22
Alignment explanation
Indices: 41272370--41272418 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
41272360 CCCGTATTTA
*
41272370 ATATACTTATGTATT-ATATTAT
1 ATATAATT-TGTATTCATATTAT
* *
41272392 ATATAATTTTTTTTCATATTAT
1 ATATAATTTGTATTCATATTAT
41272414 ATATA
1 ATATA
41272419 TATGTGTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 4 0.17
22 19 0.83
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.57
Consensus pattern (22 bp):
ATATAATTTGTATTCATATTAT
Found at i:41272411 original size:27 final size:26
Alignment explanation
Indices: 41272381--41272447 Score: 75
Period size: 24 Copynumber: 2.6 Consensus size: 26
41272371 TATACTTATG
* * *
41272381 TATTATATTATATATAATTTTTTTTCA
1 TATTATATTATATAT-AGTGTTTTTAA
41272408 TATTATA-TATATAT-GTGTTTTTAA
1 TATTATATTATATATAGTGTTTTTAA
*
41272432 TATTATGTTATATATA
1 TATTATATTATATATA
41272448 TATTATGTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
24 13 0.38
25 7 0.21
26 7 0.21
27 7 0.21
ACGTcount: A:0.34, C:0.01, G:0.04, T:0.60
Consensus pattern (26 bp):
TATTATATTATATATAGTGTTTTTAA
Found at i:41272472 original size:38 final size:41
Alignment explanation
Indices: 41272407--41272484 Score: 99
Period size: 40 Copynumber: 2.0 Consensus size: 41
41272397 ATTTTTTTTC
* *
41272407 ATATTATATATATATGTGTTTTTAATATTA-T-GTTATATAT
1 ATATTATATATATA-GTATTTTCAATATTATTAGTTATATAT
*
41272447 ATATTATGTATATA-TATTTTCAATATTATTAGTTATAT
1 ATATTATATATATAGTATTTTCAATATTATTAGTTATAT
41272485 TTTCTTATAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
38 12 0.36
39 1 0.03
40 20 0.61
ACGTcount: A:0.36, C:0.01, G:0.06, T:0.56
Consensus pattern (41 bp):
ATATTATATATATAGTATTTTCAATATTATTAGTTATATAT
Found at i:41276780 original size:28 final size:28
Alignment explanation
Indices: 41276740--41276796 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
41276730 CACCACAAAC
41276740 TTCTTATCGGATTCAGGCTGTATCAGAA
1 TTCTTATCGGATTCAGGCTGTATCAGAA
41276768 TTCTTATCGGATTCAGGCTGTATCAGAA
1 TTCTTATCGGATTCAGGCTGTATCAGAA
41276796 T
1 T
41276797 AGGAGCCTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.25, C:0.18, G:0.21, T:0.37
Consensus pattern (28 bp):
TTCTTATCGGATTCAGGCTGTATCAGAA
Found at i:41286122 original size:40 final size:40
Alignment explanation
Indices: 41286067--41286147 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
41286057 TTATGATCGA
*
41286067 ATTGTAACTTTTTGTAGTTAAGTGTTCAAAATAAAAATTT
1 ATTGTAACTTTTTGTAGTTAAGTGATCAAAATAAAAATTT
41286107 ATTGTAACTTTTTGTAGTTAAGTGATCAAAATAAAAATTT
1 ATTGTAACTTTTTGTAGTTAAGTGATCAAAATAAAAATTT
41286147 A
1 A
41286148 CTCATAGTTT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.40, C:0.05, G:0.12, T:0.43
Consensus pattern (40 bp):
ATTGTAACTTTTTGTAGTTAAGTGATCAAAATAAAAATTT
Found at i:41290992 original size:47 final size:47
Alignment explanation
Indices: 41290926--41291244 Score: 252
Period size: 47 Copynumber: 6.7 Consensus size: 47
41290916 TTGTTTGTGT
*
41290926 GCTAGTGT-AGAACATGTCTGGGACAT-GCATCGGCCACATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CACATTATGAGA
* * *
41290972 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAG--CATTGAGATCAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACATT---ATGAGA
* *
41291020 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGA-GATGTG-
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-AC-ATTATGAGA
* * *
41291065 TC-AGTGTAAGACCATGTTTGGGACATGGCATCGGCACGGATATGTGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC--AT-TATGAGA
* * * *
41291114 GCTAGTGCAAGACCATGTCTGGGACATGGCGTCGGC-CTTAGTTTTGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC--A-TTATGAGA
* *
41291163 GTTAGTGTAAAACCATGT-TCGGGACATGGCATC-G-AC-TTGATGGATGA
1 GCTAGTGTAAGACCATGTCT-GGGACATGGCATCGGCACATT-AT-GA-GA
*
41291210 GCTAGTGTAAGACCATGTCTGGAACATGGCATCGG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG
41291245 TATTATACCC
Statistics
Matches: 218, Mismatches: 31, Indels: 46
0.74 0.11 0.16
Matches are distributed among these distances:
44 11 0.05
45 21 0.10
46 28 0.13
47 60 0.28
48 30 0.14
49 36 0.17
50 32 0.15
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (47 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACATTATGAGA
Found at i:41291115 original size:94 final size:94
Alignment explanation
Indices: 41290926--41291244 Score: 282
Period size: 94 Copynumber: 3.4 Consensus size: 94
41290916 TTGTTTGTGT
* * * *
41290926 GCTAGTGT-AGAACATGTCTGGGACAT-GCATCGGCCAC-ATTATGAGAGCCAGTGTAAGACCAT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTACGA-TAT--GTGTCAGTGTAAGACCAT
* * * *
41290988 GTCTGGGACATGGCATCAGCATTGAGA--TCAGA
63 GTTTGGGACATGGCATC-GCA-CGATATGTGAGA
*
41291020 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGATGTGTCAGTGTAAGACCATGTT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTACGATATGTGTCAGTGTAAGACCATGTT
41291083 TGGGACATGGCATCGGCACGGATATGTGAGA
66 TGGGACATGGCATC-GCAC-GATATGTGAGA
* * * * * *
41291114 GCTAGTGCAAGACCATGTCTGGGACATGGCGTCGGCCTTA-GTTTTGATAGTTAGTGTAAAACCA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-C-TACGATATG-T-GTCAGTGTAAGACCA
* *
41291178 TGTTCGGGACATGGCATCG-AC-TTGATG-GATGA
62 TGTTTGGGACATGGCATCGCACGAT-ATGTGA-GA
*
41291210 GCTAGTGTAAGACCATGTCTGGAACATGGCATCGG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG
41291245 TATTATACCC
Statistics
Matches: 191, Mismatches: 21, Indels: 24
0.81 0.09 0.10
Matches are distributed among these distances:
92 38 0.20
94 49 0.26
95 21 0.11
96 43 0.23
97 6 0.03
98 4 0.02
99 30 0.16
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (94 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTACGATATGTGTCAGTGTAAGACCATGTT
TGGGACATGGCATCGCACGATATGTGAGA
Found at i:41291237 original size:96 final size:98
Alignment explanation
Indices: 41291067--41291244 Score: 247
Period size: 96 Copynumber: 1.8 Consensus size: 98
41291057 GAGATGTGTC
* *
41291067 AGTGTAAGACCATGTTTGGGACATGGCATCGGCACGGATATGTGAGAGCTAGTGCAAGACCATGT
1 AGTGTAAAACCATGTTCGGGACATGGCATCGGCACGGA-ATGTGAGAGCTAGTGCAAGACCATGT
* *
41291132 CTGGGACATGGCGTCGGCCTTAGTTTTGATAGTT
65 CTGGAACATGGCATCGGCCTTAGTTTTGATAGTT
* *
41291166 AGTGTAAAACCATGTTCGGGACATGGCATC-G-ACTTG-ATG-GATGAGCTAGTGTAAGACCATG
1 AGTGTAAAACCATGTTCGGGACATGGCATCGGCAC-GGAATGTGA-GAGCTAGTGCAAGACCATG
41291227 TCTGGAACATGGCATCGG
64 TCTGGAACATGGCATCGG
41291245 TATTATACCC
Statistics
Matches: 71, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
95 2 0.03
96 37 0.52
97 2 0.03
98 2 0.03
99 28 0.39
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.26
Consensus pattern (98 bp):
AGTGTAAAACCATGTTCGGGACATGGCATCGGCACGGAATGTGAGAGCTAGTGCAAGACCATGTC
TGGAACATGGCATCGGCCTTAGTTTTGATAGTT
Found at i:41296552 original size:28 final size:28
Alignment explanation
Indices: 41296520--41296586 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
41296510 CCGTGTCTAT
* *
41296520 TGCCCATGTCCCTCACACGGCCATGACA
1 TGCCCGTGTCCCTCACACGGCAATGACA
*
41296548 TGCCCGTGTCCCTTACACGGCAATGACA
1 TGCCCGTGTCCCTCACACGGCAATGACA
*
41296576 CGCCCGTGTCC
1 TGCCCGTGTCC
41296587 TAGCCCGTGT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.18, C:0.42, G:0.21, T:0.19
Consensus pattern (28 bp):
TGCCCGTGTCCCTCACACGGCAATGACA
Found at i:41299209 original size:48 final size:48
Alignment explanation
Indices: 41299131--41299505 Score: 456
Period size: 48 Copynumber: 7.9 Consensus size: 48
41299121 GGGAGTCTCA
* * *
41299131 CACCCTAAGTGCCAATATCATGGCCCGAAGCCAAATCAATG-AAGTTCG
1 CACCCGAAGTGCCGATATCATGGCCCGAAGCCAAATCAATGTAA-CTCG
* **
41299179 CACCTGAAGTGCCGATATCATGGCTTGAAGCCAAATCAATGTAACTCG
1 CACCCGAAGTGCCGATATCATGGCCCGAAGCCAAATCAATGTAACTCG
*** * * * * *
41299227 CACTTAAAATGTCGATATCATGGCTCAAAGCCAAATCAATG-AAGTTCG
1 CACCCGAAGTGCCGATATCATGGCCCGAAGCCAAATCAATGTAA-CTCG
* *
41299275 CACCCGAAGTGCCGATATCATGACCCGAAGCC--A--AATGTAACTCA
1 CACCCGAAGTGCCGATATCATGGCCCGAAGCCAAATCAATGTAACTCG
** * *
41299319 CACTTGAAGTGCTGATATCATGGCCCGAAGCCAAATCAATGTAACACG
1 CACCCGAAGTGCCGATATCATGGCCCGAAGCCAAATCAATGTAACTCG
* * *
41299367 CACCCGAAGTGTCAATATCATGGCCCGAAGCCAAATCAATGTAACTCT
1 CACCCGAAGTGCCGATATCATGGCCCGAAGCCAAATCAATGTAACTCG
* **
41299415 CACCCGAAGTGTCGATATCATGGCCCGAAGCCAAATCAATGTAACTTA
1 CACCCGAAGTGCCGATATCATGGCCCGAAGCCAAATCAATGTAACTCG
41299463 CACCCGAAGTGCCGATATCATGGCCCGAAGCCAAATCAATGTA
1 CACCCGAAGTGCCGATATCATGGCCCGAAGCCAAATCAATGTA
41299506 TTCCCTAATG
Statistics
Matches: 280, Mismatches: 40, Indels: 14
0.84 0.12 0.04
Matches are distributed among these distances:
44 34 0.12
45 2 0.01
46 2 0.01
47 2 0.01
48 238 0.85
49 2 0.01
ACGTcount: A:0.34, C:0.27, G:0.19, T:0.20
Consensus pattern (48 bp):
CACCCGAAGTGCCGATATCATGGCCCGAAGCCAAATCAATGTAACTCG
Found at i:41299448 original size:188 final size:188
Alignment explanation
Indices: 41299145--41299498 Score: 523
Period size: 188 Copynumber: 1.9 Consensus size: 188
41299135 CTAAGTGCCA
** * * **
41299145 ATATCATGGCCCGAAGCCAAATCAATGAAGTTCGCACCTGAAGTGCCGATATCATGGCTTGAAGC
1 ATATCATGGCCCGAAGCCAAATCAATGAAGCACGCACCCGAAGTGCCAATATCATGGCCCGAAGC
** * *
41299210 CAAATCAATGTAACTCGCACTTAAAATGTCGATATCATGGCTCAAAGCCAAATCAATG-AAGTTC
66 CAAATCAATGTAACTCGCACCCAAAATGTCGATATCATGGCCCAAAGCCAAATCAATGTAACTT-
*
41299274 GCACCCGAAGTGCCGATATCATGACCCGAAGCCAAATGTAACTCACACTTGAAGTGCTG
130 ACACCCGAAGTGCCGATATCATGACCCGAAGCCAAATGTAACTCACACTTGAAGTGCTG
*
41299333 ATATCATGGCCCGAAGCCAAATCAATGTAA-CACGCACCCGAAGTGTCAATATCATGGCCCGAAG
1 ATATCATGGCCCGAAGCCAAATCAATG-AAGCACGCACCCGAAGTGCCAATATCATGGCCCGAAG
* * * *
41299397 CCAAATCAATGTAACTCTCACCCGAAGTGTCGATATCATGGCCCGAAGCCAAATCAATGTAACTT
65 CCAAATCAATGTAACTCGCACCCAAAATGTCGATATCATGGCCCAAAGCCAAATCAATGTAACTT
*
41299462 ACACCCGAAGTGCCGATATCATGGCCCGAAGCCAAAT
130 ACACCCGAAGTGCCGATATCATGACCCGAAGCCAAAT
41299499 CAATGTATTC
Statistics
Matches: 147, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
188 141 0.96
189 6 0.04
ACGTcount: A:0.34, C:0.27, G:0.19, T:0.20
Consensus pattern (188 bp):
ATATCATGGCCCGAAGCCAAATCAATGAAGCACGCACCCGAAGTGCCAATATCATGGCCCGAAGC
CAAATCAATGTAACTCGCACCCAAAATGTCGATATCATGGCCCAAAGCCAAATCAATGTAACTTA
CACCCGAAGTGCCGATATCATGACCCGAAGCCAAATGTAACTCACACTTGAAGTGCTG
Found at i:41300034 original size:29 final size:28
Alignment explanation
Indices: 41299966--41300038 Score: 76
Period size: 29 Copynumber: 2.5 Consensus size: 28
41299956 CCCTAGTAGC
*
41299966 CCATATTTTCCATTTATTTCACATTTTAA
1 CCATATTTTCCA-TTATTTCACAATTTAA
*
41299995 CCACAAATTTTCCA-TATTTCACAATTTAA
1 -C-CATATTTTCCATTATTTCACAATTTAA
*
41300024 TCCATATTTTTCATT
1 -CCATATTTTCCATT
41300039 TTTACTAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
28 9 0.25
29 16 0.44
30 1 0.03
31 10 0.28
ACGTcount: A:0.30, C:0.22, G:0.00, T:0.48
Consensus pattern (28 bp):
CCATATTTTCCATTATTTCACAATTTAA
Found at i:41301895 original size:23 final size:23
Alignment explanation
Indices: 41301869--41301921 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
41301859 TTTTTTTTTA
*
41301869 ATTTCA-ATTAATTTTCTAATTTC
1 ATTTCATATTAA-TTTCAAATTTC
*
41301892 ATTTCATATTCATTTCAAATTTC
1 ATTTCATATTAATTTCAAATTTC
41301915 ATTTCAT
1 ATTTCAT
41301922 TTTATATTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
23 23 0.85
24 4 0.15
ACGTcount: A:0.30, C:0.15, G:0.00, T:0.55
Consensus pattern (23 bp):
ATTTCATATTAATTTCAAATTTC
Found at i:41301897 original size:5 final size:5
Alignment explanation
Indices: 41301887--41302018 Score: 77
Period size: 5 Copynumber: 24.2 Consensus size: 5
41301877 TAATTTTCTA
*
41301887 ATTTC ATTTC ATATTC ATTTC AAATTTC ATTTC ATTTT ATATTC ATTTCAC
1 ATTTC ATTTC AT-TTC ATTTC --ATTTC ATTTC ATTTC AT-TTC ATTT--C
* * * *
41301938 ATTTC ATTTC ATTTTT TTTTC ATTTC ATTTC AATTT- TTTCTC ATTTT
1 ATTTC ATTTC A-TTTC ATTTC ATTTC ATTTC -ATTTC ATT-TC ATTTC
* * *
41301985 ATTTGA ATTTC ATTTGA ATTTT ATTTC AATTTC A
1 ATTT-C ATTTC ATTT-C ATTTC ATTTC -ATTTC A
41302019 CTTATTTTTT
Statistics
Matches: 100, Mismatches: 14, Indels: 26
0.71 0.10 0.19
Matches are distributed among these distances:
4 2 0.02
5 57 0.57
6 31 0.31
7 10 0.10
ACGTcount: A:0.24, C:0.14, G:0.02, T:0.60
Consensus pattern (5 bp):
ATTTC
Found at i:41301908 original size:16 final size:15
Alignment explanation
Indices: 41301887--41302018 Score: 77
Period size: 16 Copynumber: 8.1 Consensus size: 15
41301877 TAATTTTCTA
41301887 ATTTCATTTCATATTC
1 ATTTCATTTCAT-TTC
41301903 ATTTCAAATTTCATTTC
1 ATTTC--ATTTCATTTC
*
41301920 ATTTTATATTCATTTCAC
1 ATTTCAT-TTCATTT--C
*
41301938 ATTTCATTTCATTTTT
1 ATTTCATTTCA-TTTC
*
41301954 TTTTCATTTCATTTC
1 ATTTCATTTCATTTC
* *
41301969 AATTT-TTTCTCATTTT
1 -ATTTCATT-TCATTTC
* *
41301985 ATTTGAATTTCATTTGA
1 ATTT-CATTTCATTT-C
*
41302002 ATTTTATTTCAATTTC
1 ATTTCATTTC-ATTTC
41302018 A
1 A
41302019 CTTATTTTTT
Statistics
Matches: 92, Mismatches: 12, Indels: 24
0.72 0.09 0.19
Matches are distributed among these distances:
15 11 0.12
16 43 0.47
17 21 0.23
18 17 0.18
ACGTcount: A:0.24, C:0.14, G:0.02, T:0.60
Consensus pattern (15 bp):
ATTTCATTTCATTTC
Found at i:41301952 original size:28 final size:28
Alignment explanation
Indices: 41301887--41301964 Score: 120
Period size: 28 Copynumber: 2.8 Consensus size: 28
41301877 TAATTTTCTA
*
41301887 ATTTCATTTCATATTCATTTCAAATTTC
1 ATTTCATTTTATATTCATTTCAAATTTC
*
41301915 ATTTCATTTTATATTCATTTCACATTTC
1 ATTTCATTTTATATTCATTTCAAATTTC
* *
41301943 ATTTCATTTTTTTTTCATTTCA
1 ATTTCATTTTATATTCATTTCA
41301965 TTTCAATTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 46 1.00
ACGTcount: A:0.24, C:0.17, G:0.00, T:0.59
Consensus pattern (28 bp):
ATTTCATTTTATATTCATTTCAAATTTC
Found at i:41301973 original size:11 final size:11
Alignment explanation
Indices: 41301881--41302018 Score: 86
Period size: 11 Copynumber: 12.0 Consensus size: 11
41301871 TTCAATTAAT
41301881 TTTCTAATTTCA
1 TTTC-AATTTCA
41301893 TTTC-ATATTCA
1 TTTCAAT-TTCA
41301904 TTTCAAATTTCA
1 TTTC-AATTTCA
41301916 TTTCATTTTATATTCA
1 TTTCA----AT-TTCA
41301932 TTTCACATTTCA
1 TTTCA-ATTTCA
* **
41301944 TTTCATTTTTT
1 TTTCAATTTCA
41301955 TTTC-ATTTCA
1 TTTCAATTTCA
41301965 TTTCAATTT--
1 TTTCAATTTCA
* *
41301974 TTTCTCATTTTA
1 TTTC-AATTTCA
*
41301986 TTTGAATTTCA
1 TTTCAATTTCA
* *
41301997 TTTGAATTTTA
1 TTTCAATTTCA
41302008 TTTCAATTTCA
1 TTTCAATTTCA
41302019 CTTATTTTTT
Statistics
Matches: 100, Mismatches: 14, Indels: 25
0.72 0.10 0.18
Matches are distributed among these distances:
9 4 0.04
10 13 0.13
11 44 0.44
12 24 0.24
13 4 0.04
15 2 0.02
16 9 0.09
ACGTcount: A:0.24, C:0.14, G:0.01, T:0.60
Consensus pattern (11 bp):
TTTCAATTTCA
Found at i:41301993 original size:21 final size:21
Alignment explanation
Indices: 41301913--41301994 Score: 83
Period size: 21 Copynumber: 3.8 Consensus size: 21
41301903 ATTTCAAATT
* *
41301913 TCATTTCATTTTATATTCATTTC
1 TCATTTCATTTCA-ATT-TTTTC
* * *
41301936 ACATTTCATTTCATTTTTTTT
1 TCATTTCATTTCAATTTTTTC
41301957 TCATTTCATTTCAATTTTTTC
1 TCATTTCATTTCAATTTTTTC
* *
41301978 TCATTTTATTTGAATTT
1 TCATTTCATTTCAATTT
41301995 CATTTGAATT
Statistics
Matches: 49, Mismatches: 10, Indels: 2
0.80 0.16 0.03
Matches are distributed among these distances:
21 36 0.73
22 2 0.04
23 11 0.22
ACGTcount: A:0.21, C:0.15, G:0.01, T:0.63
Consensus pattern (21 bp):
TCATTTCATTTCAATTTTTTC
Found at i:41301995 original size:32 final size:31
Alignment explanation
Indices: 41301911--41302012 Score: 89
Period size: 32 Copynumber: 3.2 Consensus size: 31
41301901 TCATTTCAAA
* * *
41301911 TTTCATTTCATTT-TATATTCATTTCACATTTCA
1 TTTCATTTTATTTGAAT-TTCATTTCA-ATTT-T
* **
41301944 TTTCATTTTTTTTTCATTTCATTTCAATTTT
1 TTTCATTTTATTTGAATTTCATTTCAATTTT
*
41301975 TTCTCATTTTATTTGAATTTCATTTGAATTTT
1 TT-TCATTTTATTTGAATTTCATTTCAATTTT
41302007 ATTTCA
1 -TTTCA
41302013 ATTTCACTTA
Statistics
Matches: 58, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
31 2 0.03
32 32 0.55
33 22 0.38
34 2 0.03
ACGTcount: A:0.22, C:0.14, G:0.02, T:0.63
Consensus pattern (31 bp):
TTTCATTTTATTTGAATTTCATTTCAATTTT
Found at i:41302077 original size:17 final size:16
Alignment explanation
Indices: 41302039--41302071 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
41302029 TAGTTAAAAC
41302039 TTTATTTTTTTCTCAT
1 TTTATTTTTTTCTCAT
41302055 TTTATTTTTTT-TCAT
1 TTTATTTTTTTCTCAT
41302070 TT
1 TT
41302072 CATATTCTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.12, C:0.09, G:0.00, T:0.79
Consensus pattern (16 bp):
TTTATTTTTTTCTCAT
Found at i:41302191 original size:34 final size:37
Alignment explanation
Indices: 41302113--41302200 Score: 103
Period size: 34 Copynumber: 2.4 Consensus size: 37
41302103 TTTTTTTCTC
*
41302113 ATTTTATTTTAATTTCAAATTTTTTTCTTCTTCAATTAA
1 ATTTCATTTTAATTTCAAATTTTTTTCTTCTT--ATTAA
41302152 ATTTCATTTT-ATTT-AAATTTTTTTC-TCATT-TTAA
1 ATTTCATTTTAATTTCAAATTTTTTTCTTC-TTATTAA
*
41302186 ATTTCATTTAAATTT
1 ATTTCATTTTAATTT
41302201 TTTTAAATCA
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
34 13 0.29
35 4 0.09
36 2 0.04
37 13 0.29
38 4 0.09
39 9 0.20
ACGTcount: A:0.28, C:0.09, G:0.00, T:0.62
Consensus pattern (37 bp):
ATTTCATTTTAATTTCAAATTTTTTTCTTCTTATTAA
Found at i:41302903 original size:22 final size:22
Alignment explanation
Indices: 41302863--41302925 Score: 92
Period size: 22 Copynumber: 2.8 Consensus size: 22
41302853 TTATATTTTT
41302863 ATTTCAATTTCTATT-CAATTTGA
1 ATTTC-ATTTC-ATTCCAATTTGA
*
41302886 ATTTCATTTCATTCCAATTTTA
1 ATTTCATTTCATTCCAATTTGA
41302908 ATTTCATTTCATTCCAAT
1 ATTTCATTTCATTCCAAT
41302926 AAAAAAGTTC
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
21 3 0.08
22 30 0.79
23 5 0.13
ACGTcount: A:0.29, C:0.17, G:0.02, T:0.52
Consensus pattern (22 bp):
ATTTCATTTCATTCCAATTTGA
Found at i:41302969 original size:11 final size:11
Alignment explanation
Indices: 41302953--41303010 Score: 55
Period size: 11 Copynumber: 5.1 Consensus size: 11
41302943 TTTTTAAATA
41302953 TAATTTCATTT
1 TAATTTCATTT
41302964 TAATTTCA-TT
1 TAATTTCATTT
*
41302974 TCATTTCCATTT
1 TAATTT-CATTT
*
41302986 TCATTTTCATTT
1 T-AATTTCATTT
*
41302998 TCATTTCACTTT
1 TAATTTCA-TTT
41303010 T
1 T
41303011 TACTTTATTT
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
10 7 0.18
11 15 0.39
12 13 0.34
13 3 0.08
ACGTcount: A:0.21, C:0.17, G:0.00, T:0.62
Consensus pattern (11 bp):
TAATTTCATTT
Found at i:41302984 original size:6 final size:6
Alignment explanation
Indices: 41302956--41303003 Score: 64
Period size: 6 Copynumber: 8.3 Consensus size: 6
41302946 TTAAATATAA
* *
41302956 TTTCAT TTT-AA TTTCA- TTTCAT TTCCAT TTTCAT TTTCAT TTTCAT
1 TTTCAT TTTCAT TTTCAT TTTCAT TTTCAT TTTCAT TTTCAT TTTCAT
41303002 TT
1 TT
41303004 CACTTTTTAC
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
5 9 0.24
6 28 0.76
ACGTcount: A:0.19, C:0.17, G:0.00, T:0.65
Consensus pattern (6 bp):
TTTCAT
Found at i:41302989 original size:12 final size:11
Alignment explanation
Indices: 41302955--41303010 Score: 69
Period size: 12 Copynumber: 4.9 Consensus size: 11
41302945 TTTAAATATA
*
41302955 ATTTCATTTTA
1 ATTTCATTTTC
41302966 ATTTCA-TTTC
1 ATTTCATTTTC
41302976 ATTTCCATTTTC
1 ATTT-CATTTTC
41302988 ATTTTCATTTTC
1 A-TTTCATTTTC
41303000 ATTTCACTTTT
1 ATTTCA-TTTT
41303011 TACTTTATTT
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
10 7 0.17
11 13 0.32
12 17 0.43
13 3 0.08
ACGTcount: A:0.20, C:0.18, G:0.00, T:0.62
Consensus pattern (11 bp):
ATTTCATTTTC
Found at i:41303148 original size:27 final size:28
Alignment explanation
Indices: 41303118--41303181 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 28
41303108 TGTATTAATT
41303118 AATATATTTA-ATCAATTGTATAATTTG
1 AATATATTTATATCAATTGTATAATTTG
** * *
41303145 AATA-AAGTATGTCATTTGTATAATTTG
1 AATATATTTATATCAATTGTATAATTTG
*
41303172 TATATATTTA
1 AATATATTTA
41303182 CAACGTTTTT
Statistics
Matches: 28, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
26 3 0.11
27 22 0.79
28 3 0.11
ACGTcount: A:0.39, C:0.03, G:0.09, T:0.48
Consensus pattern (28 bp):
AATATATTTATATCAATTGTATAATTTG
Found at i:41306055 original size:12 final size:11
Alignment explanation
Indices: 41306025--41306049 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
41306015 TTTAACTAAT
41306025 AAAGCAAACAA
1 AAAGCAAACAA
41306036 AAAGCAAACAA
1 AAAGCAAACAA
41306047 AAA
1 AAA
41306050 CTCAAATGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.76, C:0.16, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAGCAAACAA
Found at i:41311448 original size:14 final size:15
Alignment explanation
Indices: 41311429--41311458 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
41311419 GTTGTTTAAA
41311429 TTTTAAAA-TATATT
1 TTTTAAAATTATATT
41311443 TTTTAAAATTATATT
1 TTTTAAAATTATATT
41311458 T
1 T
41311459 AGAATAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (15 bp):
TTTTAAAATTATATT
Found at i:41313585 original size:18 final size:20
Alignment explanation
Indices: 41313551--41313587 Score: 60
Period size: 18 Copynumber: 1.9 Consensus size: 20
41313541 AAACGACAAT
41313551 AAAACAATGGCAAAACAACA
1 AAAACAATGGCAAAACAACA
41313571 AAAACAAT-G-AAAACAAC
1 AAAACAATGGCAAAACAAC
41313588 GGCAAAAAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 8 0.47
19 1 0.06
20 8 0.47
ACGTcount: A:0.68, C:0.19, G:0.08, T:0.05
Consensus pattern (20 bp):
AAAACAATGGCAAAACAACA
Found at i:41315965 original size:26 final size:28
Alignment explanation
Indices: 41315936--41316000 Score: 66
Period size: 26 Copynumber: 2.4 Consensus size: 28
41315926 TTAGTAATAT
*
41315936 AAAATAATATGTA-CA-TAAGATAAC-A
1 AAAATAATATATACCACTAAGATAACTA
*
41315961 AAAA-AATATATACCACTAATATAACATA
1 AAAATAATATATACCACTAAGATAAC-TA
41315989 AAAATACATATA
1 AAAATA-ATATA
41316001 CAATTAATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
24 7 0.22
25 6 0.19
26 8 0.25
28 5 0.16
29 1 0.03
30 5 0.16
ACGTcount: A:0.62, C:0.11, G:0.03, T:0.25
Consensus pattern (28 bp):
AAAATAATATATACCACTAAGATAACTA
Found at i:41316008 original size:28 final size:26
Alignment explanation
Indices: 41315955--41316009 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 26
41315945 TGTACATAAG
* *
41315955 ATAACAAAAAAATATATACCACTAAT
1 ATAACAAAAAAACATATACAACTAAT
*
41315981 ATAACATAAAAATACATATACAATTAAT
1 ATAACA-AAAAA-ACATATACAACTAAT
41316009 A
1 A
41316010 ATATGAGACA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 6 0.25
27 5 0.21
28 13 0.54
ACGTcount: A:0.62, C:0.13, G:0.00, T:0.25
Consensus pattern (26 bp):
ATAACAAAAAAACATATACAACTAAT
Found at i:41316357 original size:28 final size:31
Alignment explanation
Indices: 41316326--41316383 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
41316316 GAAATATCCA
41316326 TACATAAT-AAA-AATACATAT-ATATATAG
1 TACATAATAAAAGAATACATATAATATATAG
*
41316354 TACATATTAAAAGAATACATATAATATATA
1 TACATAATAAAAGAATACATATAATATATA
41316384 TTTCAAGAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 7 0.27
29 3 0.12
30 9 0.35
31 7 0.27
ACGTcount: A:0.57, C:0.07, G:0.03, T:0.33
Consensus pattern (31 bp):
TACATAATAAAAGAATACATATAATATATAG
Found at i:41316413 original size:22 final size:24
Alignment explanation
Indices: 41316357--41316413 Score: 64
Period size: 24 Copynumber: 2.5 Consensus size: 24
41316347 TATATAGTAC
* *
41316357 ATATTAAAAGAATACATATAATAT
1 ATATTAAAAGAATAAAGATAATAT
**
41316381 ATATTTCAAGAA-AAAGATAATA-
1 ATATTAAAAGAATAAAGATAATAT
41316403 ATATTAAAAGA
1 ATATTAAAAGA
41316414 GTAACTATTA
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
22 9 0.33
23 8 0.30
24 10 0.37
ACGTcount: A:0.60, C:0.04, G:0.07, T:0.30
Consensus pattern (24 bp):
ATATTAAAAGAATAAAGATAATAT
Found at i:41319037 original size:141 final size:143
Alignment explanation
Indices: 41318774--41319042 Score: 332
Period size: 141 Copynumber: 1.9 Consensus size: 143
41318764 CACGTGAGCC
* * * *
41318774 AAAGCGCAACTCACCTCTCGCAATATGAGTTGGTCTTTTTGAAACTTAATTTAAAAAATAAATTT
1 AAAGCGCAACTCACCTCTCGCAATATGAGTTGGTATTTTTGAAACTGAATCTAAAAAAGAAA--T
* *
41318839 TTGAAAATACCTCGCCATGTGACCCAAGGCTCAACTCACCTCTCGCACTATGAGTTGATTTTTTT
64 TTGAAAATACCTCGCCATGTGACCCAAGACTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
41318904 GAAAAACAGAAATTA
129 GAAAAACAGAAATTA
* *
41318919 AAAGCTCAACTCACCTCTCGCAATATGAGTT-G-ATTTTTGAAAACATGAA-CTAAAACAGAAA-
1 AAAGCGCAACTCACCTCTCGCAATATGAGTTGGTATTTTTG-AAAC-TGAATCTAAAAAAGAAAT
* * * * * *
41318980 TTGAGAATTCCTCAG-CATGTGAGCCGAGACTCAACTTACTTCTCGCAATATGAGTTGATTTTT
64 TTGAAAATACCTC-GCCATGTGACCCAAGACTCAACTCACCTCTCGCAATATGAGTTGATTTTT
41319043 GAAAAGTATA
Statistics
Matches: 107, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
141 53 0.50
142 1 0.01
143 6 0.06
144 14 0.13
145 33 0.31
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.30
Consensus pattern (143 bp):
AAAGCGCAACTCACCTCTCGCAATATGAGTTGGTATTTTTGAAACTGAATCTAAAAAAGAAATTT
GAAAATACCTCGCCATGTGACCCAAGACTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA
AAAACAGAAATTA
Found at i:41319079 original size:86 final size:84
Alignment explanation
Indices: 41318922--41319217 Score: 346
Period size: 86 Copynumber: 3.4 Consensus size: 84
41318912 GAAATTAAAA
* * *
41318922 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA-CATGAACTAAAACAGAAATTGAGA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGTAT-AAATTAAACAGAAATTGA-A
*
41318986 ATTCCTCAGCATGTGAGCC-GAG
64 ATACCTCAGC-TGTGA-CCTGAG
* * * * *
41319008 ACTCAACTTACTTCTCGCAATATGAGTTGATTTTTGAAAAGTATAAATTAAATAGAATTTGGAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGTATAAATTAAACAGAAATT-GAAA
41319073 TACCTCAGCGTGTGACCTGAG
65 TACCTCAGC-TGTGACCTGAG
* *
41319094 GTTCAACTCACCTCTCGCAATATGAGTTGATTTTCTTGAAAAGTAGAAACTGATAAACAGAAATT
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTT-TTGAAAAGTATAAA-T--TAAACAGAAATT
* *
41319159 GAAATTACCTCGGC-GTGTCCTGAG
61 GAAA-TACCTCAGCTGTGACCTGAG
41319183 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
41319218 TTTATATACC
Statistics
Matches: 181, Mismatches: 20, Indels: 17
0.83 0.09 0.08
Matches are distributed among these distances:
85 2 0.01
86 93 0.51
87 9 0.05
88 16 0.09
89 39 0.22
90 4 0.02
91 18 0.10
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (84 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGTATAAATTAAACAGAAATTGAAAT
ACCTCAGCTGTGACCTGAG
Found at i:41319126 original size:227 final size:229
Alignment explanation
Indices: 41318689--41319135 Score: 550
Period size: 231 Copynumber: 1.9 Consensus size: 229
41318679 TGTGATCTTG
** *
41318689 AGCTCAACTCATTTCTCGCAATATGAATTGATTCTTTAAAAACAGACATTAAAACAGAAATTGAA
1 AGCTCAACTCACCTCTCGCAATATGAATTGATTCTTTAAAAACAGACACTAAAACAGAAATTGAA
* *
41318754 AATAGCTCAGCACGTGAGCCAAAGCGCAACTCACCTCTCGCAATATGAGTTGGTCTTTTTGAAAC
66 AATACCTCAGCACGTGAGCCAAAGCGCAACTCACCTCTCGCAATATGAGTTGGTATTTTTGAAAC
*
41318819 TTAATTTAAAAAATAAATTTTTGAAAATACCTCGCCATGTGACCCAAGGCTCAACTCACCTCTCG
131 TTAAATT--AAAATAAA-TTTTGAAAATACCTCGCCATGTGACCCAAGGCTCAACTCACCTCTCG
* *
41318884 CACTATGAGTTGATTTTTTTGAAAAACAGAAATTAAA
193 CAATATGAGTTGATTTTCTTGAAAAACAGAAATTAAA
* *
41318921 AGCTCAACTCACCTCTCGCAATATGAGTTGATT-TTTGAAAACATGA-ACTAAAACAGAAATTGA
1 AGCTCAACTCACCTCTCGCAATATGAATTGATTCTTTAAAAACA-GACACTAAAACAGAAATTGA
* * * * * * *
41318984 GAATTCCTCAGCATGTGAGCC-GAGACTCAACTTACTTCTCGCAATATGAGTT-G-ATTTTTGAA
65 AAATACCTCAGCACGTGAGCCAAAG-CGCAACTCACCTCTCGCAATATGAGTTGGTATTTTTG-A
* * * ** *
41319046 AAGTATAAATT-AAATAGAA-TTTGGAAATACCTCAG-CGTGTGACCTGAGGTTCAACTCACCTC
128 AACT-TAAATTAAAATA-AATTTTGAAAATACCTC-GCCATGTGACCCAAGGCTCAACTCACCTC
41319108 TCGCAATATGAGTTGATTTTCTTGAAAA
190 TCGCAATATGAGTTGATTTTCTTGAAAA
41319136 GTAGAAACTG
Statistics
Matches: 186, Mismatches: 23, Indels: 17
0.82 0.10 0.08
Matches are distributed among these distances:
227 62 0.33
228 6 0.03
229 8 0.04
230 7 0.04
231 71 0.38
232 32 0.17
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.30
Consensus pattern (229 bp):
AGCTCAACTCACCTCTCGCAATATGAATTGATTCTTTAAAAACAGACACTAAAACAGAAATTGAA
AATACCTCAGCACGTGAGCCAAAGCGCAACTCACCTCTCGCAATATGAGTTGGTATTTTTGAAAC
TTAAATTAAAATAAATTTTGAAAATACCTCGCCATGTGACCCAAGGCTCAACTCACCTCTCGCAA
TATGAGTTGATTTTCTTGAAAAACAGAAATTAAA
Found at i:41319257 original size:60 final size:60
Alignment explanation
Indices: 41319164--41319276 Score: 199
Period size: 60 Copynumber: 1.9 Consensus size: 60
41319154 AAATTGAAAT
* *
41319164 TACCTCGGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTATA
1 TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTATA
*
41319224 TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGGAATATAAGTTGATTTT
1 TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTT
41319277 CAAAAAGCAG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
60 50 1.00
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.35
Consensus pattern (60 bp):
TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTATA
Found at i:41320262 original size:46 final size:45
Alignment explanation
Indices: 41320176--41320263 Score: 124
Period size: 45 Copynumber: 2.0 Consensus size: 45
41320166 TGTGTTAATC
* *
41320176 AAGACGCCCTTTTCGGGTTTTCACCTTGAATCTCTCTTTTTTTTT
1 AAGACGCCCTTTTCGGGTTTTCACCTTGAATCCCCCTTTTTTTTT
* *
41320221 AAGATGCCCTTTATCGGGTTTTCACCTTG-ATCCCCCATTTTTT
1 AAGACGCCCTTT-TCGGGTTTTCACCTTGAATCCCCCTTTTTTT
41320264 CTTTTCTTCT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
45 22 0.58
46 16 0.42
ACGTcount: A:0.15, C:0.26, G:0.14, T:0.45
Consensus pattern (45 bp):
AAGACGCCCTTTTCGGGTTTTCACCTTGAATCCCCCTTTTTTTTT
Found at i:41331321 original size:26 final size:28
Alignment explanation
Indices: 41331292--41331356 Score: 66
Period size: 26 Copynumber: 2.4 Consensus size: 28
41331282 TTAGTAATAT
*
41331292 AAAATAATATGTA-CA-TAAGATAAC-A
1 AAAATAATATATACCACTAAGATAACTA
*
41331317 AAAA-AATATATACCACTAATATAACATA
1 AAAATAATATATACCACTAAGATAAC-TA
41331345 AAAATACATATA
1 AAAATA-ATATA
41331357 CAATTAATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
24 7 0.22
25 6 0.19
26 8 0.25
28 5 0.16
29 1 0.03
30 5 0.16
ACGTcount: A:0.62, C:0.11, G:0.03, T:0.25
Consensus pattern (28 bp):
AAAATAATATATACCACTAAGATAACTA
Found at i:41331364 original size:28 final size:26
Alignment explanation
Indices: 41331311--41331365 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 26
41331301 TGTACATAAG
* *
41331311 ATAACAAAAAAATATATACCACTAAT
1 ATAACAAAAAAACATATACAACTAAT
*
41331337 ATAACATAAAAATACATATACAATTAAT
1 ATAACA-AAAAA-ACATATACAACTAAT
41331365 A
1 A
41331366 ATATGAGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 6 0.25
27 5 0.21
28 13 0.54
ACGTcount: A:0.62, C:0.13, G:0.00, T:0.25
Consensus pattern (26 bp):
ATAACAAAAAAACATATACAACTAAT
Found at i:41331772 original size:25 final size:25
Alignment explanation
Indices: 41331713--41331772 Score: 61
Period size: 25 Copynumber: 2.4 Consensus size: 25
41331703 TATGTAGTAC
*
41331713 ATATTAAAAG-AATACATATAATAT
1 ATATTAAAAGAAAAACATATAATAT
** *
41331737 ATATTTCAAGAAAAAGATAATAATA-
1 ATATTAAAAGAAAAACAT-ATAATAT
41331762 ATATTAAAAGA
1 ATATTAAAAGA
41331773 GTAACTATTA
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
24 8 0.29
25 14 0.50
26 6 0.21
ACGTcount: A:0.60, C:0.03, G:0.07, T:0.30
Consensus pattern (25 bp):
ATATTAAAAGAAAAACATATAATAT
Found at i:41333540 original size:46 final size:46
Alignment explanation
Indices: 41333482--41333653 Score: 170
Period size: 46 Copynumber: 3.7 Consensus size: 46
41333472 TGGGCATCCA
41333482 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCG
* * * * * * *
41333528 AACTTGTTGAGTTGAGTCCGAGTTC-GTGAAATGTA-ACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA-GCGTCCG
* * *
41333575 AACTTGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACG-CCTG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCC-G
* * *
41333621 AGCTCGTTGAGTTGAGTTCGAGTTCGCTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
41333654 GCGGGTTACA
Statistics
Matches: 100, Mismatches: 20, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
45 3 0.03
46 60 0.60
47 37 0.37
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCG
Found at i:41333633 original size:93 final size:93
Alignment explanation
Indices: 41333474--41333646 Score: 267
Period size: 93 Copynumber: 1.9 Consensus size: 93
41333464 GGGATATTTG
* * *
41333474 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTTGTTGAG
1 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCCGAACTCGTTGAG
41333539 TTGAGTCCGAGTTCGTGAAATGTAACTA
66 TTGAGTCCGAGTTCGTGAAATGTAACTA
* * *
41333567 GGCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACG-CCTGAGCTCGTTGA
1 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCC-GAACTCGTTGA
*
41333631 GTTGAGTTCGAGTTCG
65 GTTGAGTCCGAGTTCG
41333647 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAAATGTAACTA
Found at i:41336945 original size:80 final size:79
Alignment explanation
Indices: 41336807--41336971 Score: 226
Period size: 80 Copynumber: 2.1 Consensus size: 79
41336797 GACTAAGATT
* **
41336807 CGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTA
1 CGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCTA
*
41336871 AATCCGGGTTAAGTCC
65 AATCC-GGTTAAATCC
*
41336887 CGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTA
1 CGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTA
* *
41336951 TATCCGGTTAAATTC
65 AATCCGGTTAAATCC
41336966 CGAAGG
1 CGAAGG
41336972 TACGTGATTT
Statistics
Matches: 76, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
79 16 0.21
80 58 0.76
81 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
CGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTAA
ATCCGGTTAAATCC
Found at i:41336952 original size:40 final size:40
Alignment explanation
Indices: 41336753--41336938 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
41336743 TTGAATGATG
* * * * *
41336753 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** *
41336793 TCCGGACTAAGAT-TCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
41336833 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
41336873 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
41336914 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
41336939 AACGAGTAGC
Statistics
Matches: 131, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 120 0.92
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:41339866 original size:15 final size:15
Alignment explanation
Indices: 41339827--41339906 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
41339817 GTATCTTGGG
*
41339827 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
41339842 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
41339857 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
*
41339872 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
41339887 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
41339901 TTTCTT
1 TTTCTT
41339907 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 10 0.19
15 41 0.77
16 2 0.04
ACGTcount: A:0.10, C:0.19, G:0.14, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:41339896 original size:30 final size:30
Alignment explanation
Indices: 41339818--41339905 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
41339808 CATAGTATCG
* * *
41339818 TATCTTGGGTTTCTTTA-TCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCC-GGATTTCTC
*
41339848 TAT-TCTGGATTTCTTTATTCCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCCGGATTTCTC
*
41339878 TATCTTGGATTTCTTTATT-CGGTTTTCT
1 TATCTTGGATTTCTTTATTCCGGATTTCT
41339906 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
29 9 0.18
30 37 0.74
31 4 0.08
ACGTcount: A:0.10, C:0.18, G:0.16, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCCGGATTTCTC
Found at i:41342347 original size:46 final size:46
Alignment explanation
Indices: 41342288--41342466 Score: 191
Period size: 46 Copynumber: 3.9 Consensus size: 46
41342278 GGATATTTAG
*
41342288 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* * * * * *
41342334 GCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTA-ACTA
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA
* *
41342380 GGCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGA
1 -GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* * * * *
41342427 ACACCCGAGCTCGTTGATTTGAGTCCGAGTTCGCTTATGG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
41342467 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 22, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
45 1 0.01
46 69 0.65
47 36 0.34
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
Found at i:41342449 original size:93 final size:93
Alignment explanation
Indices: 41342285--41342459 Score: 278
Period size: 93 Copynumber: 1.9 Consensus size: 93
41342275 CTGGGATATT
* * * **
41342285 TAGGCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTG
1 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACACCCGAACTCGTTG
41342350 AGTTGAGTCCGAGTTCGTGAAATGTAAC
66 AGTTGAGTCCGAGTTCGTGAAATGTAAC
* *
41342378 TAGGCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACACCCGAGCTCGTTG
1 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACACCCGAACTCGTTG
*
41342443 ATTTGAGTCCGAGTTCG
66 AGTTGAGTCCGAGTTCG
41342460 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACACCCGAACTCGTTG
AGTTGAGTCCGAGTTCGTGAAATGTAAC
Found at i:41345526 original size:40 final size:41
Alignment explanation
Indices: 41345478--41345613 Score: 147
Period size: 41 Copynumber: 3.4 Consensus size: 41
41345468 CACACTAGTG
* *
41345478 CACCCAGTGCCTTATCGGAT-AATTCGAAGTAGTAAATTGA
1 CACCCAGTGCCTCATCGAATAAATTCGAAGTAGTAAATTGA
* * *
41345518 CACTCAGTGTCTCATTGAATAAATTCGAAGTAGTAAATTGA
1 CACCCAGTGCCTCATCGAATAAATTCGAAGTAGTAAATTGA
* * ** *
41345559 CACCCAGTGTCTCATTGGTTAAATT-G-A--AGTAAATTGG
1 CACCCAGTGCCTCATCGAATAAATTCGAAGTAGTAAATTGA
41345596 CACCCAGTGCCTCATCGA
1 CACCCAGTGCCTCATCGA
41345614 CTCGAAGTCG
Statistics
Matches: 83, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
37 24 0.29
39 1 0.01
40 16 0.19
41 42 0.51
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.29
Consensus pattern (41 bp):
CACCCAGTGCCTCATCGAATAAATTCGAAGTAGTAAATTGA
Found at i:41345543 original size:41 final size:41
Alignment explanation
Indices: 41345498--41345610 Score: 153
Period size: 41 Copynumber: 2.9 Consensus size: 41
41345488 CTTATCGGAT
*
41345498 AATTCGAAGTAGTAAATTGACACTCAGTGTCTCATTGAATA
1 AATTCGAAGTAGTAAATTGACACCCAGTGTCTCATTGAATA
**
41345539 AATTCGAAGTAGTAAATTGACACCCAGTGTCTCATTGGTTA
1 AATTCGAAGTAGTAAATTGACACCCAGTGTCTCATTGAATA
* *
41345580 AATT-G-A--AGTAAATTGGCACCCAGTGCCTCAT
1 AATTCGAAGTAGTAAATTGACACCCAGTGTCTCAT
41345611 CGACTCGAAG
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
37 23 0.34
39 1 0.01
40 1 0.01
41 42 0.63
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.30
Consensus pattern (41 bp):
AATTCGAAGTAGTAAATTGACACCCAGTGTCTCATTGAATA
Found at i:41346538 original size:6 final size:6
Alignment explanation
Indices: 41346514--41346610 Score: 63
Period size: 6 Copynumber: 15.3 Consensus size: 6
41346504 AGGACATGGC
* * *
41346514 TTTCTT TCTTCTT TCTCTT TTTCTT TTTCTT TTTCTT TCTT-TCT TTCCTG
1 TTTCTT T-TTCTT TTTCTT TTTCTT TTTCTT TTTCTT T-TTCT-T TTTCTT
* * *
41346564 TTTC-G TTTCGTT TTGCTTT GTTTCTT TTTCTA TTTCTT TTGTCTT TT
1 TTTCTT TTTC-TT TTTC-TT -TTTCTT TTTCTT TTTCTT TT-TCTT TT
41346611 ATTTATTTGT
Statistics
Matches: 72, Mismatches: 11, Indels: 15
0.73 0.11 0.15
Matches are distributed among these distances:
5 5 0.07
6 40 0.56
7 24 0.33
8 3 0.04
ACGTcount: A:0.01, C:0.20, G:0.06, T:0.73
Consensus pattern (6 bp):
TTTCTT
Found at i:41346549 original size:31 final size:31
Alignment explanation
Indices: 41346514--41346610 Score: 90
Period size: 31 Copynumber: 3.1 Consensus size: 31
41346504 AGGACATGGC
*
41346514 TTTCTTTCTTCTTTCTCTTTTTCTTTTTCTT
1 TTTCTTTCTTCTTTCTCTATTTCTTTTTCTT
* *
41346545 TTTCTTTCTTTCTTTC-CTGTTTC-GTTTCGTT
1 TTTCTTTC-TTCTTTCTCTATTTCTTTTTC-TT
* * *
41346576 TTGCTTTGTTTCTTTTTCTATTTCTTTTGTCTT
1 TTTCTTT-CTTCTTTCTCTATTTCTTTT-TCTT
41346609 TT
1 TT
41346611 ATTTATTTGT
Statistics
Matches: 53, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
30 4 0.08
31 28 0.53
32 13 0.25
33 6 0.11
34 2 0.04
ACGTcount: A:0.01, C:0.20, G:0.06, T:0.73
Consensus pattern (31 bp):
TTTCTTTCTTCTTTCTCTATTTCTTTTTCTT
Found at i:41347955 original size:4 final size:4
Alignment explanation
Indices: 41347939--41348069 Score: 122
Period size: 4 Copynumber: 32.2 Consensus size: 4
41347929 GGAATAACAG
* * * * *
41347939 ATAA ATGA ATAA ATAA ATTAAA ACAA ATAA GTAA ATAA ATGA AT-A ATAT
1 ATAA ATAA ATAA ATAA A-T-AA ATAA ATAA ATAA ATAA ATAA ATAA ATAA
* ** * *
41347988 ATAA ATAA ATAA GTAA ATAA ATAA GCAA ATGA ATAAA ATAAA ATGA AT-A
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA AT-AA AT-AA ATAA ATAA
41348037 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA A
41348070 AGGAAACAGT
Statistics
Matches: 104, Mismatches: 18, Indels: 10
0.79 0.14 0.08
Matches are distributed among these distances:
3 6 0.06
4 86 0.83
5 9 0.09
6 3 0.03
ACGTcount: A:0.69, C:0.02, G:0.05, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:41347996 original size:53 final size:53
Alignment explanation
Indices: 41347939--41348062 Score: 157
Period size: 53 Copynumber: 2.3 Consensus size: 53
41347929 GGAATAACAG
*
41347939 ATAAATGAATAAATAAATTAAAACAAAT-AAGT-AAAT-AAATGAATAATATATAA
1 ATAAAT-AATAAATAAATT-AAACAAATGAA-TAAAATAAAATGAATAATAAATAA
*
41347992 ATAAATAAGTAAATAAA-TAAGCAAATGAATAAAATAAAATGAATAATAAATAA
1 ATAAATAA-TAAATAAATTAAACAAATGAATAAAATAAAATGAATAATAAATAA
41348045 ATAAATAAATAAATAAAT
1 ATAAAT-AATAAATAAAT
41348063 AAATAAAAGG
Statistics
Matches: 63, Mismatches: 2, Indels: 11
0.83 0.03 0.14
Matches are distributed among these distances:
51 8 0.13
52 9 0.14
53 44 0.70
54 2 0.03
ACGTcount: A:0.68, C:0.02, G:0.06, T:0.25
Consensus pattern (53 bp):
ATAAATAATAAATAAATTAAACAAATGAATAAAATAAAATGAATAATAAATAA
Found at i:41349839 original size:44 final size:44
Alignment explanation
Indices: 41349729--41349847 Score: 130
Period size: 45 Copynumber: 2.7 Consensus size: 44
41349719 GATTTGTAAC
* * *
41349729 TTGTAACTTTAATCTGTTCCACTGCAACTTTAGGGAAATAAAAT
1 TTGTAACTTTAATCTGCTCCACTACAACTTTAAGGAAATAAAAT
* * * * * *
41349773 TAGCTATCTTCAATCTGCTCCACTACTACTTTAAGGAGATAAGAT
1 TTG-TAACTTTAATCTGCTCCACTACAACTTTAAGGAAATAAAAT
* *
41349818 TTGTAGCTTTAATCTGCTCCACTGCAACTT
1 TTGTAACTTTAATCTGCTCCACTACAACTT
41349848 CAGGGAGGTA
Statistics
Matches: 60, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
44 25 0.42
45 35 0.58
ACGTcount: A:0.29, C:0.21, G:0.13, T:0.36
Consensus pattern (44 bp):
TTGTAACTTTAATCTGCTCCACTACAACTTTAAGGAAATAAAAT
Found at i:41349860 original size:44 final size:44
Alignment explanation
Indices: 41349729--41349862 Score: 151
Period size: 44 Copynumber: 3.0 Consensus size: 44
41349719 GATTTGTAAC
* * *
41349729 TTGTAACTTTAATCTGTTCCACTGCAACTTTAGGGAAATAAAAT
1 TTGTAACTTTAATCTGCTCCACTGCAACTTTAGGGAGATAAGAT
* * * * * *
41349773 TAGCTATCTTCAATCTGCTCCACTACTACTTTAAGGAGATAAGAT
1 TTG-TAACTTTAATCTGCTCCACTGCAACTTTAGGGAGATAAGAT
* * *
41349818 TTGTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGGTAAGAT
1 TTGTAACTTTAATCTGCTCCACTGCAACTTTAGGGAGATAAGAT
41349862 T
1 T
41349863 CACCACGGTG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
44 37 0.51
45 35 0.49
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.34
Consensus pattern (44 bp):
TTGTAACTTTAATCTGCTCCACTGCAACTTTAGGGAGATAAGAT
Found at i:41359141 original size:42 final size:41
Alignment explanation
Indices: 41359013--41359171 Score: 174
Period size: 42 Copynumber: 3.8 Consensus size: 41
41359003 CACACGGTAC
* **
41359013 CATACCAATGCCATATCCCAGATATGGTCTTACGTGAAATCT
1 CATACCGATGCCATATCCCAGATATGGTCTTAC-ACAAATCT
* * * * *
41359055 CGTATCGATGCCAATAGCCCAGCTATAGTCTTACACGAAATCT
1 CATACCGATGCC-ATATCCCAGATATGGTCTTACAC-AAATCT
* *
41359098 CATACCGATGCCATATCCAAGATATGGTCTTGCACAAAGTCT
1 CATACCGATGCCATATCCCAGATATGGTCTTACACAAA-TCT
* *
41359140 CATATCGATGTCATATCCCAGATATGGTCTTA
1 CATACCGATGCCATATCCCAGATATGGTCTTA
41359172 AACATTGTCT
Statistics
Matches: 95, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
41 3 0.03
42 58 0.61
43 34 0.36
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (41 bp):
CATACCGATGCCATATCCCAGATATGGTCTTACACAAATCT
Found at i:41359146 original size:85 final size:84
Alignment explanation
Indices: 41359013--41359171 Score: 203
Period size: 85 Copynumber: 1.9 Consensus size: 84
41359003 CACACGGTAC
* ** * *
41359013 CATACCAATGCCATATCCCAGATATGGTCTTACGTGAAATCTCGTATCGATGCCAATAGCCCAGC
1 CATACCAATGCCATATCCAAGATATGGTCTTACGACAAATCTCATATCGATGCC-ATAGCCCAGA
41359078 TATAGTCTTACACGAAATCT
65 TATAGTCTTACACGAAATCT
* * * *
41359098 CATACCGATGCCATATCCAAGATATGGTCTTGC-ACAAAGTCTCATATCGATGTCATATCCCAGA
1 CATACCAATGCCATATCCAAGATATGGTCTTACGACAAA-TCTCATATCGATGCCATAGCCCAGA
*
41359162 TATGGTCTTA
65 TATAGTCTTA
41359172 AACATTGTCT
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
84 20 0.32
85 43 0.68
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (84 bp):
CATACCAATGCCATATCCAAGATATGGTCTTACGACAAATCTCATATCGATGCCATAGCCCAGAT
ATAGTCTTACACGAAATCT
Found at i:41362998 original size:28 final size:28
Alignment explanation
Indices: 41362958--41363022 Score: 105
Period size: 28 Copynumber: 2.3 Consensus size: 28
41362948 ATGTACTAGA
*
41362958 ATACCCCTATGTATGCAAAATTACCAT-T
1 ATACCCCTATGTATGCAAAATGACC-TCT
41362986 ATACCCCTATGTATGCAAAATGACCTCT
1 ATACCCCTATGTATGCAAAATGACCTCT
41363014 ATACCCCTA
1 ATACCCCTA
41363023 GGGATAATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 34 0.97
ACGTcount: A:0.34, C:0.29, G:0.08, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCTCT
Found at i:41363169 original size:28 final size:29
Alignment explanation
Indices: 41363128--41363190 Score: 92
Period size: 28 Copynumber: 2.2 Consensus size: 29
41363118 AGGAAGCGTC
* *
41363128 CTGGTGGCTATGCCACAAATTATCTGT-T
1 CTGGTGGCCATGCCACAAAATATCTGTAT
*
41363156 CTGGTGGCCCTGCCACAAAATATCTGTAT
1 CTGGTGGCCATGCCACAAAATATCTGTAT
41363185 CTGGTG
1 CTGGTG
41363191 ACTCTGTCAC
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
28 24 0.77
29 7 0.23
ACGTcount: A:0.21, C:0.24, G:0.24, T:0.32
Consensus pattern (29 bp):
CTGGTGGCCATGCCACAAAATATCTGTAT
Found at i:41363201 original size:29 final size:28
Alignment explanation
Indices: 41363138--41363201 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 28
41363128 CTGGTGGCTA
* *
41363138 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACCC
*
41363166 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACCC
*
41363195 TGTCACA
1 TGCCACA
41363202 TTTTCTGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 16 0.52
29 15 0.48
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACCC
Found at i:41369517 original size:49 final size:49
Alignment explanation
Indices: 41369461--41369694 Score: 288
Period size: 49 Copynumber: 4.7 Consensus size: 49
41369451 TATCTGGTAG
*
41369461 CATAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACA
* ** * *
41369510 CATAGTAGCCTGCACTTAGTACTACACAAGTGACCTAACCATCTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGGTACA
* * * * *
41369560 CATAGTAGCTTGCACTTAGTTCTACACACGTGATCGAAGTTATCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCGGTACA
* * * *
41369611 CATAGTAGCTTGCACTTAGTACTACACATGCGACCAATTATTCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACA
* *
41369660 CGTAGTAGCCTGCACTTAGTACTACAAACGTGACC
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACC
41369695 TCACAATAGA
Statistics
Matches: 156, Mismatches: 26, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
49 73 0.47
50 45 0.29
51 38 0.24
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACA
Found at i:41369634 original size:101 final size:98
Alignment explanation
Indices: 41369461--41369694 Score: 299
Period size: 101 Copynumber: 2.4 Consensus size: 98
41369451 TATCTGGTAG
*
41369461 CATAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACATAGTAGCCTGCACT
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACATAGTAGCCTGCACT
*
41369526 TAGTACTACACAAGTGACCTAACCA-TCTGATACA
66 TAGTACTACACAAGCGACC-AACCATTC-GATACA
* * * * * *
41369560 CATAGTAGCTTGCACTTAGTTCTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCTTGCA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCGGTACACATAGTAGCCTGCA
* ** *
41369625 CTTAGTACTACACATGCGACCAATTATTCGGTACA
64 CTTAGTACTACACAAGCGACCAACCATTCGATACA
* *
41369660 CGTAGTAGCCTGCACTTAGTACTACAAACGTGACC
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACC
41369695 TCACAATAGA
Statistics
Matches: 115, Mismatches: 17, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
99 31 0.27
100 40 0.35
101 44 0.38
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (98 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACATAGTAGCCTGCACT
TAGTACTACACAAGCGACCAACCATTCGATACA
Found at i:41374275 original size:46 final size:45
Alignment explanation
Indices: 41374186--41374448 Score: 191
Period size: 46 Copynumber: 5.7 Consensus size: 45
41374176 GCATATCTGT
* * *
41374186 GCCGATGCCATGTCCCAAACATGGTCTCACACT-GACACATCTCGTA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGACACGTCTCGTA
*
41374232 GCCGATGCATGTCCTAGACATGTCTTACACTAG-CTTACGTCTCG-A
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGAC--ACGTCTCGTA
*** * *
41374277 GGTTAAAGCATGTCCCAGACATGTCTTACACTAG-CACTTGTCTC-AA
1 -GCCGATGCATGTCCCAGACATGTCTTACACTAGACAC--GTCTCGTA
* * * * *
41374323 TGTCAATGCCATGTCCCAGACATGGTCTCATACT-GACACATCTCGTA
1 -GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGACACGTCTCGTA
* *
41374370 GCCGATGCATGTCCCTGACATGTCTTACACTAGA-ATTCGTCTCAATA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGACA--CGTCTC-GTA
41374417 -CCGATGCCATGTCCCAGACATGATCTTACACT
1 GCCGATG-CATGTCCCAGACATG-TCTTACACT
41374449 GGCTCTCATA
Statistics
Matches: 176, Mismatches: 24, Indels: 32
0.76 0.10 0.14
Matches are distributed among these distances:
44 21 0.12
45 29 0.16
46 74 0.42
47 32 0.18
48 20 0.11
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.27
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGACACGTCTCGTA
Found at i:41374430 original size:47 final size:47
Alignment explanation
Indices: 41374285--41374448 Score: 160
Period size: 47 Copynumber: 3.5 Consensus size: 47
41374275 GAGGTTAAAG
* ** *
41374285 CATGTCCCAGACATGTCTTACACTAGCACTT-GTCTCAATGTCAATGC
1 CATGTCCCAGACATGTCTTACACTAG-AATTCGTCTCAATACCGATGC
* * * *
41374332 CATGTCCCAGACATGGTCTCATACT-GACA--CATCTC-GTAGCCGATG-
1 CATGTCCCAGACAT-GTCTTACACTAGA-ATTCGTCTCAATA-CCGATGC
*
41374377 CATGTCCCTGACATGTCTTACACTAGAATTCGTCTCAATACCGATGC
1 CATGTCCCAGACATGTCTTACACTAGAATTCGTCTCAATACCGATGC
41374424 CATGTCCCAGACATGATCTTACACT
1 CATGTCCCAGACATG-TCTTACACT
41374449 GGCTCTCATA
Statistics
Matches: 93, Mismatches: 14, Indels: 19
0.74 0.11 0.15
Matches are distributed among these distances:
44 9 0.10
45 16 0.17
46 20 0.22
47 31 0.33
48 17 0.18
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGAATTCGTCTCAATACCGATGC
Found at i:41382086 original size:10 final size:10
Alignment explanation
Indices: 41382071--41382096 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
41382061 TTATACTTAA
41382071 TTTTGATTAT
1 TTTTGATTAT
41382081 TTTTGATTAT
1 TTTTGATTAT
41382091 TTTTGA
1 TTTTGA
41382097 CAGATTTGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.19, C:0.00, G:0.12, T:0.69
Consensus pattern (10 bp):
TTTTGATTAT
Found at i:41384109 original size:14 final size:14
Alignment explanation
Indices: 41384090--41384117 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
41384080 AGAATATTGT
41384090 GATATGGGCTTTAG
1 GATATGGGCTTTAG
41384104 GATATGGGCTTTAG
1 GATATGGGCTTTAG
41384118 AAAAACTAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.07, G:0.36, T:0.36
Consensus pattern (14 bp):
GATATGGGCTTTAG
Found at i:41384957 original size:20 final size:19
Alignment explanation
Indices: 41384918--41384957 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
41384908 ACTTTACTAG
* *
41384918 AAAACAAATCTCTTTACAT
1 AAAACAAATATATTTACAT
41384937 AAAACAAATATATTATACAT
1 AAAACAAATATATT-TACAT
41384957 A
1 A
41384958 TACAGCTTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.55, C:0.15, G:0.00, T:0.30
Consensus pattern (19 bp):
AAAACAAATATATTTACAT
Found at i:41386167 original size:27 final size:27
Alignment explanation
Indices: 41386065--41386160 Score: 147
Period size: 27 Copynumber: 3.6 Consensus size: 27
41386055 CTAAATTGAA
41386065 AAAATGACTATTTTGCCCTTATGTGGT
1 AAAATGACTATTTTGCCCTTATGTGGT
*
41386092 AAAATGACTGTTTTGCCCTTATGTGGT
1 AAAATGACTATTTTGCCCTTATGTGGT
* * *
41386119 AAAATAACTATTTTTCCTTTATGTGGT
1 AAAATGACTATTTTGCCCTTATGTGGT
*
41386146 AAAATGACTGTTTTG
1 AAAATGACTATTTTG
41386161 TATTTATATA
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 61 1.00
ACGTcount: A:0.27, C:0.12, G:0.18, T:0.43
Consensus pattern (27 bp):
AAAATGACTATTTTGCCCTTATGTGGT
Found at i:41388040 original size:50 final size:50
Alignment explanation
Indices: 41387986--41388147 Score: 229
Period size: 50 Copynumber: 3.3 Consensus size: 50
41387976 CTAAGATAGG
* ** *
41387986 AGTTACATAATGCATGACACAATTTATGATGCAATCTTAACTAACATGAG
1 AGTTACATAATGCATGTCATTATTTATGATGCAATCTTAACTAACATGAA
* *
41388036 AGTTACATAATGCATGTCATTATGTATGATGCAA-CTTAACTAACATAAA
1 AGTTACATAATGCATGTCATTATTTATGATGCAATCTTAACTAACATGAA
* *
41388085 AGTTACATAATGCATGTCATTATTTATGATGC-ATACTTAAATAGCATGAA
1 AGTTACATAATGCATGTCATTATTTATGATGCAAT-CTTAACTAACATGAA
41388135 AGTTACATAATGC
1 AGTTACATAATGC
41388148 CCGACTTTAT
Statistics
Matches: 100, Mismatches: 10, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
48 1 0.01
49 44 0.44
50 55 0.55
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.33
Consensus pattern (50 bp):
AGTTACATAATGCATGTCATTATTTATGATGCAATCTTAACTAACATGAA
Found at i:41388075 original size:99 final size:101
Alignment explanation
Indices: 41387962--41388147 Score: 261
Period size: 99 Copynumber: 1.9 Consensus size: 101
41387952 TTCATTAAAA
* **
41387962 GATGCAAACTTTAACTAAGATAGGAGTTACATAATGCATGACACAATTTATGATGCA-ATCTTAA
1 GATGCAAACTTTAACTAACATAAAAGTTACATAATGCATGACACAATTTATGATGCATA-CTTAA
* *
41388026 CTAACATGAGAGTTACATAATGCATGTCATTATGTAT
65 ATAACATGAAAGTTACATAATGCATGTCATTATGTAT
* **
41388063 GATGC-AAC-TTAACTAACATAAAAGTTACATAATGCATGTCATTATTTATGATGCATACTTAAA
1 GATGCAAACTTTAACTAACATAAAAGTTACATAATGCATGACACAATTTATGATGCATACTTAAA
*
41388126 TAGCATGAAAGTTACATAATGC
66 TAACATGAAAGTTACATAATGC
41388148 CCGACTTTAT
Statistics
Matches: 75, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
99 66 0.88
100 4 0.05
101 5 0.07
ACGTcount: A:0.40, C:0.14, G:0.15, T:0.32
Consensus pattern (101 bp):
GATGCAAACTTTAACTAACATAAAAGTTACATAATGCATGACACAATTTATGATGCATACTTAAA
TAACATGAAAGTTACATAATGCATGTCATTATGTAT
Found at i:41388093 original size:49 final size:49
Alignment explanation
Indices: 41387962--41388147 Score: 228
Period size: 50 Copynumber: 3.7 Consensus size: 49
41387952 TTCATTAAAA
* ** * **
41387962 GATGCAAACTTTAACTAAGATAGGAGTTACATAATGCATGACACAATTTAT
1 GATGC-AAC-TTAACTAACATAAAAGTTACATAATGCATGTCATTATTTAT
* * *
41388013 GATGCAATCTTAACTAACATGAGAGTTACATAATGCATGTCATTATGTAT
1 GATGCAA-CTTAACTAACATAAAAGTTACATAATGCATGTCATTATTTAT
41388063 GATGCAACTTAACTAACATAAAAGTTACATAATGCATGTCATTATTTAT
1 GATGCAACTTAACTAACATAAAAGTTACATAATGCATGTCATTATTTAT
* * *
41388112 GATGCATACTTAAATAGCATGAAAGTTACATAATGC
1 GATGCA-ACTTAACTAACATAAAAGTTACATAATGC
41388148 CCGACTTTAT
Statistics
Matches: 120, Mismatches: 13, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
49 45 0.38
50 69 0.57
51 6 0.05
ACGTcount: A:0.40, C:0.14, G:0.15, T:0.32
Consensus pattern (49 bp):
GATGCAACTTAACTAACATAAAAGTTACATAATGCATGTCATTATTTAT
Found at i:41389542 original size:25 final size:25
Alignment explanation
Indices: 41389484--41389536 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
41389474 ATGAACCCAT
41389484 GATGTATGTATAAGTGCAAACCAAG
1 GATGTATGTATAAGTGCAAACCAAG
41389509 GATGTATGTATAAGTGCAAACCAAG
1 GATGTATGTATAAGTGCAAACCAAG
41389534 GAT
1 GAT
41389537 TGATGTGTGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.40, C:0.11, G:0.25, T:0.25
Consensus pattern (25 bp):
GATGTATGTATAAGTGCAAACCAAG
Found at i:41392887 original size:31 final size:31
Alignment explanation
Indices: 41392842--41392902 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
41392832 ATTGTATAAT
41392842 TTTCTCTTTAGTTTTAGACTTTAGTTTTTCC
1 TTTCTCTTTAGTTTTAGACTTTAGTTTTTCC
* * *
41392873 TTTCT-TTTAGGTTTTGGATTTTATTTTTTC
1 TTTCTCTTTA-GTTTTAGACTTTAGTTTTTC
41392903 ATTCTTGTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 4 0.15
31 22 0.85
ACGTcount: A:0.11, C:0.11, G:0.11, T:0.66
Consensus pattern (31 bp):
TTTCTCTTTAGTTTTAGACTTTAGTTTTTCC
Found at i:41392908 original size:30 final size:30
Alignment explanation
Indices: 41392843--41392908 Score: 71
Period size: 30 Copynumber: 2.2 Consensus size: 30
41392833 TTGTATAATT
*
41392843 TTCTCTTTAGTTTTAGACTTTAGTTTTTCCT
1 TTCT-TTTAGTTTTAGACTTTAGTTTTTCCA
* * *
41392874 TTCTTTTAGGTTTTGGATTTTA-TTTTTTCA
1 TTCTTTTA-GTTTTAGACTTTAGTTTTTCCA
41392904 TTCTT
1 TTCTT
41392909 GTTATTTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
30 15 0.50
31 15 0.50
ACGTcount: A:0.12, C:0.12, G:0.11, T:0.65
Consensus pattern (30 bp):
TTCTTTTAGTTTTAGACTTTAGTTTTTCCA
Found at i:41409787 original size:10 final size:10
Alignment explanation
Indices: 41409772--41409820 Score: 53
Period size: 10 Copynumber: 4.7 Consensus size: 10
41409762 ATTAGCATAT
41409772 TTAATTTTAA
1 TTAATTTTAA
41409782 TTAATTTGATAA
1 TTAATTT--TAA
* *
41409794 TAAATTTTGA
1 TTAATTTTAA
*
41409804 TTTATTTTAA
1 TTAATTTTAA
41409814 TTAATTT
1 TTAATTT
41409821 GATAATAAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
10 22 0.71
12 9 0.29
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (10 bp):
TTAATTTTAA
Found at i:41409812 original size:32 final size:33
Alignment explanation
Indices: 41409770--41409831 Score: 117
Period size: 32 Copynumber: 1.9 Consensus size: 33
41409760 TTATTAGCAT
41409770 ATTTAATTTTAATTAATTTGATAATAAATTTTG
1 ATTTAATTTTAATTAATTTGATAATAAATTTTG
41409803 ATTT-ATTTTAATTAATTTGATAATAAATT
1 ATTTAATTTTAATTAATTTGATAATAAATT
41409832 ATTAGCTTGG
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 25 0.86
33 4 0.14
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (33 bp):
ATTTAATTTTAATTAATTTGATAATAAATTTTG
Found at i:41412147 original size:18 final size:18
Alignment explanation
Indices: 41412124--41412160 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
41412114 GAAAACGAAA
41412124 AAGAAGGAAAG-GATGAAG
1 AAGAA-GAAAGAGATGAAG
41412142 AAGAAGAAAGAGATGAAG
1 AAGAAGAAAGAGATGAAG
41412160 A
1 A
41412161 GACATATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.59, C:0.00, G:0.35, T:0.05
Consensus pattern (18 bp):
AAGAAGAAAGAGATGAAG
Found at i:41426828 original size:45 final size:44
Alignment explanation
Indices: 41426758--41426847 Score: 126
Period size: 45 Copynumber: 2.0 Consensus size: 44
41426748 ATCTTTCTTT
41426758 TTCGAAGTTAGGGACAGTCCCGATACAAAATCCATAGTGACTCTA
1 TTCGAAGTTAGGGACAGTCCCGATACAAAAT-CATAGTGACTCTA
* * ** *
41426803 TTCGGAGTTAGGGGCAGTCTTGATACGAAATCATAGTGACTCTA
1 TTCGAAGTTAGGGACAGTCCCGATACAAAATCATAGTGACTCTA
41426847 T
1 T
41426848 CCCATTTCCA
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
44 14 0.35
45 26 0.65
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (44 bp):
TTCGAAGTTAGGGACAGTCCCGATACAAAATCATAGTGACTCTA
Found at i:41430814 original size:79 final size:78
Alignment explanation
Indices: 41430712--41430934 Score: 265
Period size: 79 Copynumber: 2.8 Consensus size: 78
41430702 GCTCCTCGTT
* *
41430712 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
41430777 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
*
41430792 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
*
41430855 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* * * * *
41430870 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
41430933 GA
63 GA
41430935 CATCATTCAA
Statistics
Matches: 125, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
78 47 0.38
79 57 0.46
80 20 0.16
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:41430829 original size:39 final size:40
Alignment explanation
Indices: 41430712--41430934 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
41430702 GCTCCTCGTT
* *
41430712 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
41430752 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
41430792 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
41430831 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
41430870 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
41430911 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
41430935 CATCATTCAA
Statistics
Matches: 166, Mismatches: 9, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
38 2 0.01
39 89 0.54
40 64 0.39
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:41433504 original size:31 final size:31
Alignment explanation
Indices: 41433469--41433532 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
41433459 CCTTTCCATA
41433469 TTTCATATTTCATAACACTGGGCCAAAGCCT
1 TTTCATATTTCATAACACTGGGCCAAAGCCT
** *
41433500 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCAAAGCCT
41433531 TT
1 TT
41433533 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCAAAGCCT
Found at i:41433849 original size:26 final size:24
Alignment explanation
Indices: 41433741--41433848 Score: 128
Period size: 25 Copynumber: 4.4 Consensus size: 24
41433731 CTGGAGGCCT
*
41433741 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTGATAAACTGGGGCAA
41433765 AGCCCTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTGATAAACTGGGGC-AA
* *
41433790 AGCCCTTTTAATAAACTAGGGCAA
1 AGCCCTTTTGATAAACTGGGGCAA
* *
41433814 AGGCCCTTTTCGGTAAACTGGGGCAT
1 A-GCCCTTTT-GATAAACTGGGGCAA
41433840 AGCCCTTTT
1 AGCCCTTTT
41433849 TGCACTTCCT
Statistics
Matches: 73, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
23 7 0.10
24 16 0.22
25 38 0.52
26 12 0.16
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
AGCCCTTTTGATAAACTGGGGCAA
Found at i:41433919 original size:20 final size:20
Alignment explanation
Indices: 41433896--41433942 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
41433886 TTATGAATAC
41433896 ATCATGTGCATATCATA-CA
1 ATCATGTGCATATCATATCA
41433915 TATCATGTGCATATCATATCA
1 -ATCATGTGCATATCATATCA
41433936 ATCATGT
1 ATCATGT
41433943 ATATCAAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:41438202 original size:45 final size:45
Alignment explanation
Indices: 41438151--41438273 Score: 140
Period size: 45 Copynumber: 2.7 Consensus size: 45
41438141 GAGTCATGGT
* *
41438151 CGGTAAGCTCTTTTGAGCTGAACAGTAAGCTCT-ATTGAGCTGAAA
1 CGGTAAGCTCTTTTGAGTTGAACAGTAAGCTCTCA-TGAGCTAAAA
* *
41438196 CGGTAAGCTCTATTGAGTTGAACGGTAAGCTCTCATGAGCTAAAA
1 CGGTAAGCTCTTTTGAGTTGAACAGTAAGCTCTCATGAGCTAAAA
*** **
41438241 AAATAAGCTCTTACGAGTTGAATCAGTAAGCTC
1 CGGTAAGCTCTTTTGAGTTGAA-CAGTAAGCTC
41438274 ATACGAGCTG
Statistics
Matches: 65, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
45 55 0.85
46 10 0.15
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.28
Consensus pattern (45 bp):
CGGTAAGCTCTTTTGAGTTGAACAGTAAGCTCTCATGAGCTAAAA
Found at i:41438205 original size:23 final size:22
Alignment explanation
Indices: 41438151--41438236 Score: 120
Period size: 22 Copynumber: 3.9 Consensus size: 22
41438141 GAGTCATGGT
*
41438151 CGGTAAGCTCTTTTGAGCTGAA
1 CGGTAAGCTCTATTGAGCTGAA
*
41438173 CAGTAAGCTCTATTGAGCTGAAA
1 CGGTAAGCTCTATTGAGCTG-AA
*
41438196 CGGTAAGCTCTATTGAGTTGAA
1 CGGTAAGCTCTATTGAGCTGAA
41438218 CGGTAAGCTCTCA-TGAGCT
1 CGGTAAGCTCT-ATTGAGCT
41438237 AAAAAAATAA
Statistics
Matches: 57, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
22 36 0.63
23 21 0.37
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (22 bp):
CGGTAAGCTCTATTGAGCTGAA
Found at i:41442910 original size:17 final size:17
Alignment explanation
Indices: 41442888--41442924 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
41442878 ATATTGCCTA
41442888 GCAGATAGTATCGCATG
1 GCAGATAGTATCGCATG
* *
41442905 GCAGATTGTATCGCTTG
1 GCAGATAGTATCGCATG
41442922 GCA
1 GCA
41442925 AACTGTATTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (17 bp):
GCAGATAGTATCGCATG
Found at i:41442943 original size:51 final size:51
Alignment explanation
Indices: 41442873--41443013 Score: 126
Period size: 51 Copynumber: 2.8 Consensus size: 51
41442863 ATTGCCTGGT
* * * *
41442873 AAACAATATTGCCTAGCAGATAGTATCGCATGGCAGATTGTATCGCT-TGGC
1 AAACAGTATTGCCTGGCAGATAGTATCGCATGGCAGATAGTATCG-TGTGCC
* * * * *
41442924 AAACTGTATTGCCTGGCAGACAATATCG-ACTAGTAGATAGTATCGTGTGCC
1 AAACAGTATTGCCTGGCAGATAGTATCGCA-TGGCAGATAGTATCGTGTGCC
* * *
41442975 GAACAGTATTGCCTGGC-GAGTAGTATCGCCTGGCGGATA
1 AAACAGTATTGCCTGGCAGA-TAGTATCGCATGGCAGATA
41443014 CGATTTGCAA
Statistics
Matches: 69, Mismatches: 17, Indels: 8
0.73 0.18 0.09
Matches are distributed among these distances:
50 4 0.06
51 65 0.94
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (51 bp):
AAACAGTATTGCCTGGCAGATAGTATCGCATGGCAGATAGTATCGTGTGCC
Found at i:41444322 original size:40 final size:40
Alignment explanation
Indices: 41444259--41444340 Score: 112
Period size: 40 Copynumber: 2.0 Consensus size: 40
41444249 TGTAAATGTC
*
41444259 TTTAGGAGTACCGAAGTAAAAACAGGGGCACATATGTGCA
1 TTTAGGAGTACCGAAGTAAAAACAGGAGCACATATGTGCA
* * *
41444299 TTTAGG-GATACCGCAGTACAAACAGGAGTACATATGTGCA
1 TTTAGGAG-TACCGAAGTAAAAACAGGAGCACATATGTGCA
41444339 TT
1 TT
41444341 CAAGCAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.03
40 36 0.97
ACGTcount: A:0.35, C:0.16, G:0.26, T:0.23
Consensus pattern (40 bp):
TTTAGGAGTACCGAAGTAAAAACAGGAGCACATATGTGCA
Found at i:41445596 original size:60 final size:60
Alignment explanation
Indices: 41445483--41445624 Score: 137
Period size: 60 Copynumber: 2.4 Consensus size: 60
41445473 TTACATTCAT
* * * * *
41445483 AATACTGGCAGCTTGTCTATAATACTGGTGGTTAGATCACAATACTGGCAGTTTA-CTTCC
1 AATACTGTCAGCTTGTCTACAATACTAGTGGCTAGATCACAATACTGACAGTTTATC-TCC
* * * * *
41445543 AATACTGTCAGCTTGTTTGCAATACTAGTGGCTAGA-CTACAATATTGATAGTTTATCTGC
1 AATACTGTCAGCTTGTCTACAATACTAGTGGCTAGATC-ACAATACTGACAGTTTATCTCC
*
41445603 AATACTGGT-AGCTTGTCCACAA
1 AATACT-GTCAGCTTGTCTACAA
41445625 ATTGGTGTAT
Statistics
Matches: 66, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
59 1 0.02
60 62 0.94
61 3 0.05
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (60 bp):
AATACTGTCAGCTTGTCTACAATACTAGTGGCTAGATCACAATACTGACAGTTTATCTCC
Found at i:41450233 original size:28 final size:28
Alignment explanation
Indices: 41450172--41450260 Score: 126
Period size: 28 Copynumber: 3.1 Consensus size: 28
41450162 TGAGAATGAC
*
41450172 TATAAATGTGAATTGGGCCTGATGGGCCA
1 TATAAATGTG-ATTGGGCCTAATGGGCCA
*
41450201 TATAAATGTGATTTGGGTC-AATGGGCCA
1 TATAAATGTGA-TTGGGCCTAATGGGCCA
*
41450229 TATAAATGTGATTGGGCCTAGTGGGCCA
1 TATAAATGTGATTGGGCCTAATGGGCCA
41450257 TATA
1 TATA
41450261 CAGGTATGTG
Statistics
Matches: 54, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 6 0.11
28 32 0.59
29 16 0.30
ACGTcount: A:0.28, C:0.12, G:0.29, T:0.30
Consensus pattern (28 bp):
TATAAATGTGATTGGGCCTAATGGGCCA
Found at i:41455163 original size:14 final size:15
Alignment explanation
Indices: 41455144--41455178 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
41455134 CAAAACTAAT
*
41455144 ATTTTTACAA-TTTC
1 ATTTTTACAACATTC
41455158 ATTTTTACAACATTC
1 ATTTTTACAACATTC
41455173 ATTTTT
1 ATTTTT
41455179 CTTTAAAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.53
15 9 0.47
ACGTcount: A:0.29, C:0.14, G:0.00, T:0.57
Consensus pattern (15 bp):
ATTTTTACAACATTC
Found at i:41455511 original size:24 final size:24
Alignment explanation
Indices: 41455468--41455513 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
41455458 AACTCACTAG
*
41455468 ATTTTACAATTTAAGTTTTCATAA
1 ATTTTACAATTTAAGATTTCATAA
41455492 ATTTTACAATTTCAA-ATTTCAT
1 ATTTTACAATTT-AAGATTTCAT
41455514 CCGAGGTAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 18 0.90
25 2 0.10
ACGTcount: A:0.37, C:0.11, G:0.02, T:0.50
Consensus pattern (24 bp):
ATTTTACAATTTAAGATTTCATAA
Found at i:41455910 original size:41 final size:41
Alignment explanation
Indices: 41455848--41455932 Score: 152
Period size: 41 Copynumber: 2.1 Consensus size: 41
41455838 TGCACCCCAC
*
41455848 TACATCGGTGCAGTTACAGTTAGGGACAATTGCCCGCTTAG
1 TACACCGGTGCAGTTACAGTTAGGGACAATTGCCCGCTTAG
*
41455889 TACACCGGTGCAGTTACAGTTAGTGACAATTGCCCGCTTAG
1 TACACCGGTGCAGTTACAGTTAGGGACAATTGCCCGCTTAG
41455930 TAC
1 TAC
41455933 TTCATTGGAT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.27
Consensus pattern (41 bp):
TACACCGGTGCAGTTACAGTTAGGGACAATTGCCCGCTTAG
Done.