Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 135 of 356
Found at i:43407594 original size:120 final size:120
Alignment explanation
Indices: 43407462--43408083 Score: 1201
Period size: 120 Copynumber: 5.2 Consensus size: 120
43407452 TTTTCAAGTT
43407462 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
*
43407527 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
43407582 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
*
43407647 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
43407702 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
*
43407767 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
43407822 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
*
43407887 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATTTTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
43407942 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
43408007 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
43408062 ATA-ATTTAATAATAATTATGTT
1 ATATATTTAATAATAATTATGTT
43408084 TAAATATGAT
Statistics
Matches: 497, Mismatches: 5, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
119 19 0.04
120 478 0.96
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (120 bp):
ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
Found at i:43407934 original size:17 final size:18
Alignment explanation
Indices: 43407914--43407949 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
43407904 TTATTAAGAA
*
43407914 TTTT-ATTAAATTATATT
1 TTTTAATTAAAATATATT
43407931 TTTTAATTAAAATATATT
1 TTTTAATTAAAATATATT
43407949 T
1 T
43407950 AATAATAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
TTTTAATTAAAATATATT
Found at i:43408323 original size:16 final size:16
Alignment explanation
Indices: 43408302--43408370 Score: 111
Period size: 16 Copynumber: 4.2 Consensus size: 16
43408292 GATTAGCTAT
43408302 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
43408318 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
*
43408335 TACACCTGTAATCCAA
1 TACACCTCTAATCCAA
*
43408351 TACGCCTCTAATCCAA
1 TACACCTCTAATCCAA
43408367 TACA
1 TACA
43408371 GCGAACCAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
16 33 0.69
17 15 0.31
ACGTcount: A:0.36, C:0.36, G:0.03, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:43408347 original size:33 final size:32
Alignment explanation
Indices: 43408302--43408370 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 32
43408292 GATTAGCTAT
43408302 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
* *
43408335 TACACCTGTAATCCAATACGCCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
43408367 TACA
1 TACA
43408371 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
32 8 0.24
33 26 0.76
ACGTcount: A:0.36, C:0.36, G:0.03, T:0.25
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:43413163 original size:55 final size:54
Alignment explanation
Indices: 43413028--43413165 Score: 141
Period size: 55 Copynumber: 2.5 Consensus size: 54
43413018 GTTTAGGAAT
* * * * * * *
43413028 ACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGCAAGGAA
1 ACCATGTAAGACCATGCCAAGGCATGGCATTGATAACTATGACAAGGAAAAGAA
* * * * * *
43413082 ATCATGTAAGATCATGTCAAGACATGGCATTGATAAACTATGATAAGGAAAAGAT
1 ACCATGTAAGACCATGCCAAGGCATGGCATTGAT-AACTATGACAAGGAAAAGAA
*
43413137 CCCATGTAAGACCATGCCAAGGCATGGCA
1 ACCATGTAAGACCATGCCAAGGCATGGCA
43413166 ATGGTGAGTT
Statistics
Matches: 65, Mismatches: 18, Indels: 1
0.77 0.21 0.01
Matches are distributed among these distances:
54 28 0.43
55 37 0.57
ACGTcount: A:0.38, C:0.18, G:0.23, T:0.20
Consensus pattern (54 bp):
ACCATGTAAGACCATGCCAAGGCATGGCATTGATAACTATGACAAGGAAAAGAA
Found at i:43421039 original size:40 final size:40
Alignment explanation
Indices: 43421002--43421185 Score: 189
Period size: 40 Copynumber: 4.6 Consensus size: 40
43420992 GCTACTCGTT
*
43421002 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
43421042 CAAATGCCTTTGGGACTTAACCCGGATT-TAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* * *
43421082 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
43421121 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
43421162 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
43421186 ACATCATTCA
Statistics
Matches: 118, Mismatches: 18, Indels: 16
0.78 0.12 0.11
Matches are distributed among these distances:
38 2 0.02
39 29 0.25
40 73 0.62
41 14 0.12
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:43421119 original size:79 final size:79
Alignment explanation
Indices: 43420979--43421186 Score: 203
Period size: 79 Copynumber: 2.6 Consensus size: 79
43420969 CCTTCGGAAT
* *
43420979 TTAACCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACA
1 TTAACCGGATATAGCTACTCGTACAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACA
43421044 AATGCCTTTGGGAC
66 AATGCCTTTGGGAC
* * * *
43421058 TTAACCCGGATTTAG-TAACTCGTACCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGC
1 TTAA-CCGGATATAGCT-ACTCGTACAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGC
*
43421120 ACAAATGCC-TTCGGATC
63 ACAAATGCCTTTGGGA-C
* * * * *
43421137 TTAGTCCGGATAT-GGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TTA-ACCGGATATAGCT-AC-TCGTACAAATGCCTTCGGGACATAGCCCGGA
43421187 CATCATTCAA
Statistics
Matches: 108, Mismatches: 13, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
78 7 0.06
79 56 0.52
80 45 0.42
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (79 bp):
TTAACCGGATATAGCTACTCGTACAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACA
AATGCCTTTGGGAC
Found at i:43425759 original size:40 final size:40
Alignment explanation
Indices: 43425663--43425846 Score: 239
Period size: 40 Copynumber: 4.5 Consensus size: 40
43425653 TATTCGGATG
*
43425663 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC---TAGTTGCT
*
43425706 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTG-CT
**
43425746 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTG-CT
* *
43425786 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGCT
*
43425826 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
43425847 ATACTTGGGT
Statistics
Matches: 128, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
39 15 0.12
40 81 0.63
41 2 0.02
43 30 0.23
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGCT
Found at i:43438297 original size:48 final size:49
Alignment explanation
Indices: 43438180--43438545 Score: 264
Period size: 48 Copynumber: 7.7 Consensus size: 49
43438170 AGGGTATAAT
*
43438180 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTAAT-GTC-TCAA-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-ATCATCATCAAG
* *** **
43438227 GTCGATGCCATGTTTGAGACAT-GTCTTACACTAACTATCATCATCAAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCATCAAG
* * *
43438275 GCCGATGCCATGTCCCATACATGGTCTTACACTGGCTCTCGCAT-ATC-CG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTAT--CATCATCAAG
** * * * * *
43438324 TATCGATGCCATGTCCAAGACATGATCTTACACTGAC-A-CCTCTAT-ACG
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATC-ATCAAG
* * *
43438372 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACTTTA-CGAG
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTAT-CATCATCAAG
* * * *
43438421 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCT-AGTC-TTAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCA-TCATCAAG
* * **
43438467 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCATCAAG
* *
43438515 GCTGATG-CATGTCCTAGACAT-GTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
43438546 AGCTCACAAT
Statistics
Matches: 252, Mismatches: 46, Indels: 43
0.74 0.13 0.13
Matches are distributed among these distances:
45 2 0.01
46 48 0.19
47 64 0.25
48 82 0.33
49 18 0.07
50 35 0.14
51 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCATCAAG
Found at i:43438487 original size:94 final size:95
Alignment explanation
Indices: 43438176--43438550 Score: 333
Period size: 94 Copynumber: 3.9 Consensus size: 95
43438166 ACAGAGGGTA
* * *
43438176 TAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGG--CTAATGTCT-C-AAGTCGATGCCA
1 TAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACT-T-TACGAGGCCGATGCCA
*** * *
43438237 TGTTTGAGACATGTCTTACACTAACTATCATCAT
64 TGTCCAAGACATGTCTTACACTAGCTCT-ATC-T
* * * * * * *
43438271 CAAGGCCGATGCCATGTCCCATACATGGTCTTACACTGGCTCTCGCATATCCGTA--TCGATGCC
1 TAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-AC-TTTACG-AGGCCGATGCC
* *
43438334 ATGTCCAAGACATGATCTTACACT-GACAC-CTCT
63 ATGTCCAAGACATG-TCTTACACTAG-CTCTATCT
*
43438367 ATACGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACTTTACGAGGCCGATG-CA
1 -TA-ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACTTTACGAGGCCGATGCCA
*
43438430 TGTCCCAGACATGTCTTACACTAGCTCTAGTCT
64 TGTCCAAGACATGTCTTACACTAGCTCTA-TCT
* * * * *
43438463 TAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAATGTGGCTGATG-CATG
1 TAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACTTTACGAGGCCGATGCCATG
*
43438526 TCCTAGACATGTCTTACACTAGCTC
66 TCCAAGACATGTCTTACACTAGCTC
43438551 ACAATAACTC
Statistics
Matches: 232, Mismatches: 31, Indels: 35
0.78 0.10 0.12
Matches are distributed among these distances:
94 89 0.38
95 58 0.25
96 10 0.04
97 7 0.03
98 56 0.24
99 11 0.05
100 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (95 bp):
TAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACTTTACGAGGCCGATGCCATG
TCCAAGACATGTCTTACACTAGCTCTATCT
Found at i:43445645 original size:37 final size:37
Alignment explanation
Indices: 43445595--43445673 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
43445585 TTATTACAAA
* *
43445595 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
43445632 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
43445669 GTCTT
1 GTCTT
43445674 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:43445870 original size:47 final size:47
Alignment explanation
Indices: 43445792--43446349 Score: 763
Period size: 47 Copynumber: 12.1 Consensus size: 47
43445782 CCCTTCGGGA
* * * * * * *
43445792 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
***
43445839 CCCGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
43445886 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA-G-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
43445931 C-TAT-AC--ATATACA-TTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
43445973 CTTATCACATATATACACTTTCACATTCATCACATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACA-T--T--CATCACATCGGCCATTAGGC
43446025 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
43446071 CTTATCACATATATACAC-TTCACATTCATCGCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
43446117 CTTATCACATATATACACTTTCACATTCATCGCA-CGG-TATTA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
43446161 CTTATCACACATA-ACACATTCACATTCATCACATCGGCCGTTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
43446207 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
43446254 CTTAT--CATATATACAC-TTCACATTCATCACATCGGCTATTA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
43446297 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
43446346 CTTA
1 CTTA
43446350 CTTCATTTCA
Statistics
Matches: 463, Mismatches: 24, Indels: 46
0.87 0.05 0.09
Matches are distributed among these distances:
40 26 0.06
41 8 0.02
42 1 0.00
43 30 0.06
44 47 0.10
45 44 0.10
46 65 0.14
47 162 0.35
48 26 0.06
49 7 0.02
50 1 0.00
51 1 0.00
52 45 0.10
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:43446059 original size:25 final size:25
Alignment explanation
Indices: 43445976--43446059 Score: 66
Period size: 25 Copynumber: 3.3 Consensus size: 25
43445966 ATTAGGCCTT
43445976 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
* * * *
43446001 ATCACATCACAT-CGGCCATT-AGGCCTT-
1 ATCACAT-ATATAC--ACTTTCA--CATTC
43446028 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
43446053 ATCACAT
1 ATCACAT
43446060 CGGCCATTAG
Statistics
Matches: 43, Mismatches: 8, Indels: 16
0.64 0.12 0.24
Matches are distributed among these distances:
24 3 0.07
25 18 0.42
26 8 0.19
27 11 0.26
28 3 0.07
ACGTcount: A:0.33, C:0.30, G:0.05, T:0.32
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:43446112 original size:92 final size:94
Alignment explanation
Indices: 43445792--43446349 Score: 763
Period size: 92 Copynumber: 6.0 Consensus size: 94
43445782 CCCTTCGGGA
* * * * * * * ***
43445792 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCCGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
43445857 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
43445886 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA-G-C-TAT-AC--ATATACA-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
43445944 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
43445973 CTTATCACATATATACACTTTCACATTCATCACATCACATCGGCCATTAGGCCTTATCACATATA
1 CTTATCACATATATACACTTTCACA-T--T--CATCACATCGGCCATTAGGCCTTATCACATATA
43446038 TACACTTTCACATTCATCACATCGGCCATTA-GC
61 TACACTTTCACATTCATCACATCGGCCATTAGGC
*
43446071 CTTATCACATATATACAC-TTCACATTCATCGCATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* *
43446135 TTTCACATTCATCGCA-CGG-TATTA-GC
66 TTTCACATTCATCACATCGGCCATTAGGC
* * *
43446161 CTTATCACACATA-ACACATTCACATTCATCACATCGGCCGTTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
43446225 TTTCACATTCATCACATCGGCTATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
43446254 CTTAT--CATATATACAC-TTCACATTCATCACATCGGCTATTA-GCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
43446315 ACTTTCACATTCATCACATCGGCTATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
43446346 CTTA
1 CTTA
43446350 CTTCATTTCA
Statistics
Matches: 426, Mismatches: 19, Indels: 40
0.88 0.04 0.08
Matches are distributed among these distances:
87 54 0.13
88 8 0.02
89 4 0.01
90 90 0.21
91 35 0.08
92 122 0.29
93 9 0.02
94 39 0.09
95 3 0.01
96 3 0.01
97 6 0.01
98 27 0.06
99 26 0.06
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:43449909 original size:119 final size:119
Alignment explanation
Indices: 43449736--43449970 Score: 400
Period size: 119 Copynumber: 2.0 Consensus size: 119
43449726 CGAATACACG
* * *
43449736 TCACCAGCATGATTGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAA
1 TCACCAGCATGAATGCTCTTCGGGACTTAGCACGGATACATCACTAGCACGAATGCTCTTCGGAA
43449801 CTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
66 CTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGAC-TAGCCCGGATACA
* * *
43449856 TCACTAGCATGAATGCTCTTCGGGACTTAGC-CGGATACATCACTAGCATGAATGCTCTTCGGGA
1 TCACCAGCATGAATGCTCTTCGGGACTTAGCACGGATACATCACTAGCACGAATGCTCTTCGGAA
43449920 CTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTAGCCCGGAT
66 CTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTAGCCCGGAT
43449971 TTAGTAACTC
Statistics
Matches: 109, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
118 10 0.09
119 71 0.65
120 28 0.26
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (119 bp):
TCACCAGCATGAATGCTCTTCGGGACTTAGCACGGATACATCACTAGCACGAATGCTCTTCGGAA
CTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTAGCCCGGATACA
Found at i:43449990 original size:40 final size:40
Alignment explanation
Indices: 43449736--43449970 Score: 393
Period size: 40 Copynumber: 5.9 Consensus size: 40
43449726 CGAATACACG
* * * * *
43449736 TCACCAGCATGATTGCTCTTCGGGATTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
43449776 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
43449816 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
43449856 TCACTAGCATGAATGCTCTTCGGGACTTAG-CCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
43449895 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
43449935 TCACTAGCATGAATGCTCTTCGGGAC-TAGCCCGGAT
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
43449971 TTAGTAACTC
Statistics
Matches: 185, Mismatches: 9, Indels: 3
0.94 0.05 0.02
Matches are distributed among these distances:
39 49 0.26
40 136 0.74
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:43449990 original size:119 final size:118
Alignment explanation
Indices: 43449749--43450049 Score: 376
Period size: 119 Copynumber: 2.5 Consensus size: 118
43449739 CCAGCATGAT
* * *
43449749 TGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGC-CGGATACATCACTAGCA-GAATGCTCTTCGGGACTTAGCCCGGATA
* **
43449814 CATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
64 CATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATAACTAGCACCAA
43449869 TGCTCTTCGGGACTTAGCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATAC
1 TGCTCTTCGGGACTTAGCCGGATACATCACTAGCA-GAATGCTCTTCGGGACTTAGCCCGGATAC
** *
43449934 ATCACTAGCATGAATGCTCTTCGGGAC-TAGCCCGGATTTAGTAACTCGCACCAA
65 ATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA-TAACTAGCACCAA
* ** * *
43449988 TGC-CTTC-GGATCTTAGTCCAGATATGGTCACTTAGCACAAAGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGA-CTTAG-CCGGATA-CATCAC-TAGCAGAATGCTCTTCGGGACTTAGCCCGGA
43450050 CATCATTCGA
Statistics
Matches: 161, Mismatches: 15, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
117 3 0.02
118 20 0.12
119 108 0.67
120 25 0.16
121 5 0.03
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (118 bp):
TGCTCTTCGGGACTTAGCCGGATACATCACTAGCAGAATGCTCTTCGGGACTTAGCCCGGATACA
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATAACTAGCACCAA
Found at i:43449995 original size:39 final size:40
Alignment explanation
Indices: 43449749--43450049 Score: 281
Period size: 40 Copynumber: 7.6 Consensus size: 40
43449739 CCAGCATGAT
* * * * *
43449749 TGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATAACTAGCACCAA
* * **
43449789 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATAACTAGCACCAA
* **
43449829 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATAACTAGCACCAA
* **
43449869 TGCTCTTCGGGACTTAG-CCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATAACTAGCACCAA
* **
43449908 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATAACTAGCACCAA
** *
43449948 TGCTCTTCGGGAC-TAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATACA-TAACTAGCACCAA
* * ** *
43449988 TGC-CTTC-GGATCTTAGTCCAGATATGGTCACTTAGCA-CAA
1 TGCTCTTCGGGA-CTTAGCCCGGATA-CATAAC-TAGCACCAA
*
43450028 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
43450050 CATCATTCGA
Statistics
Matches: 232, Mismatches: 22, Indels: 14
0.87 0.08 0.05
Matches are distributed among these distances:
38 3 0.01
39 55 0.24
40 167 0.72
41 7 0.03
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATAACTAGCACCAA
Found at i:43450003 original size:79 final size:80
Alignment explanation
Indices: 43449736--43449970 Score: 393
Period size: 79 Copynumber: 3.0 Consensus size: 80
43449726 CGAATACACG
* * * * * * *
43449736 TCACCAGCATGATTGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
43449801 CTTAGCCCGGATACA
66 CTTAGCCCGGATACA
43449816 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
43449881 CTTAG-CCGGATACA
66 CTTAGCCCGGATACA
43449895 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
43449960 C-TAGCCCGGAT
66 CTTAGCCCGGAT
43449971 TTAGTAACTC
Statistics
Matches: 147, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
78 3 0.02
79 81 0.55
80 63 0.43
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (80 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
CTTAGCCCGGATACA
Found at i:43450478 original size:43 final size:43
Alignment explanation
Indices: 43450417--43450519 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
43450407 CGCATTTCAA
43450417 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
43450460 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
43450503 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
43450520 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:43452423 original size:37 final size:37
Alignment explanation
Indices: 43452373--43452451 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
43452363 TTATTACGAA
* *
43452373 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
43452410 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
43452447 GTCTT
1 GTCTT
43452452 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:43452648 original size:47 final size:47
Alignment explanation
Indices: 43452570--43453313 Score: 1174
Period size: 47 Copynumber: 16.1 Consensus size: 47
43452560 CCCTTCGGGA
* * * * * * *
43452570 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
***
43452617 CCCGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
43452664 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
43452711 CTTATGACATATATACACTTTCACATTCATCACATCGGCCGTTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
43452758 CTTATGACATATATACACTTTCACATTCATCACATCGGCCGTTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
43452805 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
43452852 CTTATCACATATATACA-TTTCAC-TTCATCACATC-G-C-TT--GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
43452892 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
43452939 CTTATCACATATATACAC-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
43452985 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
43453032 CTTATCACACATATACACTTTCACATTCATCACATC-GCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
43453078 CTTATCACACATAT--A---TCACATTCATCACATCGGCCGTTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
43453120 CTTATCACATATATACACTTTCACATTCATCACATCGGCCGTTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
43453167 CTTATCACATATATACACTTTCACATACATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
43453214 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
43453261 CTTATCACATATATGTACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATA--TACACTTTCACATTCATCACATCGGCCATTAGGC
43453310 CTTA
1 CTTA
43453314 CTATCATTTC
Statistics
Matches: 653, Mismatches: 28, Indels: 30
0.92 0.04 0.04
Matches are distributed among these distances:
40 19 0.03
41 22 0.03
42 34 0.05
43 2 0.00
44 4 0.01
45 13 0.02
46 75 0.11
47 447 0.68
49 37 0.06
ACGTcount: A:0.29, C:0.30, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:43471413 original size:22 final size:22
Alignment explanation
Indices: 43471361--43471425 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
43471351 TTAAAGCCTT
* *
43471361 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
43471383 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
43471405 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
43471426 AGTATTTGCC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:43471789 original size:19 final size:19
Alignment explanation
Indices: 43471767--43471824 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
43471757 TTCTGATTTT
43471767 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
*
43471786 TGATTCTG--A--T--T-T
1 TGATTCTGTTACCTGATAC
43471798 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
43471817 TGATTCTG
1 TGATTCTG
43471825 ATTCTGATTC
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 8 0.27
13 1 0.03
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
19 16 0.53
ACGTcount: A:0.19, C:0.17, G:0.17, T:0.47
Consensus pattern (19 bp):
TGATTCTGTTACCTGATAC
Found at i:43471794 original size:6 final size:6
Alignment explanation
Indices: 43471756--43471873 Score: 84
Period size: 6 Copynumber: 19.3 Consensus size: 6
43471746 TTGCATTCAC
* * *
43471756 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
43471806 -TTACCTG ATACTG ATTCTG ATTCTG ATTCTTC A-CCT- ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTC-TG ATTCTG ATTCTG ATTCTG
43471854 ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
43471874 AATGTTTCTT
Statistics
Matches: 89, Mismatches: 11, Indels: 24
0.72 0.09 0.19
Matches are distributed among these distances:
4 1 0.01
5 8 0.09
6 64 0.72
7 14 0.16
8 2 0.02
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:43471802 original size:31 final size:31
Alignment explanation
Indices: 43471756--43471889 Score: 159
Period size: 31 Copynumber: 4.4 Consensus size: 31
43471746 TTGCATTCAC
*
43471756 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTCTGATTCTGTTACCTGATACTG
*
43471788 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
* *
43471819 ATTCTGATTCTGATTCT-TCACCT-ATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
*
43471848 ATTCTGATTCTGATTCTAGTT--CTGATAATG
1 ATTCTGATTCTGATTCT-GTTACCTGATACTG
* *
43471878 TTTCTTATTCTG
1 ATTCTGATTCTG
43471890 TAATGGGTTA
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
29 24 0.26
30 19 0.21
31 41 0.45
32 7 0.08
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTG
Found at i:43473787 original size:27 final size:27
Alignment explanation
Indices: 43473757--43473931 Score: 232
Period size: 26 Copynumber: 6.6 Consensus size: 27
43473747 TTAGTTTACC
*
43473757 AAATTATCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
43473784 AAATTACTAAAATA-CCTTGGTTT-TA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
43473809 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
43473836 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
43473863 AAATTATC-AAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
43473889 AAATTACCAAAATACCCCT-ATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
**
43473915 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
43473932 TCGACCTGTA
Statistics
Matches: 131, Mismatches: 14, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
25 15 0.11
26 59 0.45
27 57 0.44
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:43473885 original size:26 final size:26
Alignment explanation
Indices: 43473757--43473979 Score: 186
Period size: 26 Copynumber: 8.5 Consensus size: 26
43473747 TTAGTTTACC
*
43473757 AAATTATCAAAATACCCCTGGTTTGTA
1 AAATTATC-AAATACCCCTAGTTTGTA
* * *
43473784 AAATTACTAAAATA-CCTTGGTTT-TA
1 AAATTA-TCAAATACCCCTAGTTTGTA
*
43473809 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTATC-AAATACCCCTAGTTTGTA
* *
43473836 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTATC-AAATACCCCTAGTTTGTA
43473863 AAATTATCAAATACCCCTAGTTTGTA
1 AAATTATCAAATACCCCTAGTTTGTA
* *
43473889 AAATTACCAAAATACCCCTA-TTTGTG
1 AAATTATC-AAATACCCCTAGTTTGTA
* * **
43473915 AAATTACTGAAATA-CCCTCGACCTGTA
1 AAATTA-TCAAATACCCCTAG-TTTGTA
* * *
43473942 AAATTATGAAATA-CCCTCGACTTGTA
1 AAATTATCAAATACCCCTAG-TTTGTA
*
43473968 AAATTACCAAAT
1 AAATTATCAAAT
43473980 CCATTAAAAT
Statistics
Matches: 168, Mismatches: 20, Indels: 17
0.82 0.10 0.08
Matches are distributed among these distances:
25 17 0.10
26 84 0.50
27 66 0.39
28 1 0.01
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.31
Consensus pattern (26 bp):
AAATTATCAAATACCCCTAGTTTGTA
Found at i:43473913 original size:79 final size:79
Alignment explanation
Indices: 43473757--43473978 Score: 270
Period size: 79 Copynumber: 2.8 Consensus size: 79
43473747 TTAGTTTACC
* * *
43473757 AAATTATCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCTTGGTTT-TAAAATTACCAAAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTA-TAAAATACCCTAGTTTGTAAAATTACCAAAA
43473821 TACCCCTAGTTTGTA
65 TACCCCTAGTTTGTA
*
43473836 AAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAATACCCCTAGTTTGTAAAATTACCAAAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTATAAAATA-CCCTAGTTTGTAAAATTACCAAAA
*
43473901 TACCCCTA-TTTGTG
65 TACCCCTAGTTTGTA
** *** * * *
43473915 AAATTACTGAAATA-CCCTCGACCTGTAAAATTATGAAATACCCTCGACTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCCT-GGTTTGTAAAATTATAAAATACCCTAG-TTTGTAAAATTACCAAA
43473979 TCCATTAAAA
Statistics
Matches: 126, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
78 15 0.12
79 89 0.71
80 22 0.17
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (79 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTATAAAATACCCTAGTTTGTAAAATTACCAAAAT
ACCCCTAGTTTGTA
Found at i:43473928 original size:53 final size:54
Alignment explanation
Indices: 43473757--43473931 Score: 234
Period size: 53 Copynumber: 3.3 Consensus size: 54
43473747 TTAGTTTACC
* * *
43473757 AAATTA-TCAAAATACCCCTGGTTTGTAAAATTACTAAAATA-CCTTGGTTT-TA
1 AAATTACT-AAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
*
43473809 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
* * *
43473863 AAATTA-TCAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCT-ATTTGTG
1 AAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
*
43473915 AAATTACTGAAATACCC
1 AAATTACTAAAATACCC
43473932 TCGACCTGTA
Statistics
Matches: 110, Mismatches: 9, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
52 48 0.44
53 54 0.49
54 8 0.07
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (54 bp):
AAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
Found at i:43473942 original size:53 final size:53
Alignment explanation
Indices: 43473757--43473979 Score: 172
Period size: 53 Copynumber: 4.2 Consensus size: 53
43473747 TTAGTTTACC
** * * *
43473757 AAATTATCAAAATACCCCTG-GTTTGTAAAATTACTAAAATA-CCTTGGTTT-TA
1 AAATTATC-AAATACCCC-GAGCCTGTAAAATTACCAAAATACCCCTGATTTGTA
* * ** *
43473809 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
1 AAATTATC-AAATACCCCGAGCCTGTAAAATTACCAAAATACCCCTGATTTGTA
* ** *
43473863 AAATTATCAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCT-ATTTGTG
1 AAATTATCAAATACCCCGAGCCTGTAAAATTACCAAAATACCCCTGATTTGTA
* ** *
43473915 AAATTACTGAAATACCCTCGA-CCTGTAAAATTA-TGAAATA-CCCTCGACTTGTA
1 AAATTA-TCAAATACCC-CGAGCCTGTAAAATTACCAAAATACCCCT-GATTTGTA
*
43473968 AAATTACCAAAT
1 AAATTATCAAAT
43473980 CCATTAAAAT
Statistics
Matches: 147, Mismatches: 17, Indels: 14
0.83 0.10 0.08
Matches are distributed among these distances:
51 4 0.03
52 57 0.39
53 75 0.51
54 11 0.07
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.31
Consensus pattern (53 bp):
AAATTATCAAATACCCCGAGCCTGTAAAATTACCAAAATACCCCTGATTTGTA
Found at i:43474119 original size:24 final size:24
Alignment explanation
Indices: 43474091--43474317 Score: 334
Period size: 24 Copynumber: 9.4 Consensus size: 24
43474081 ATAACCCTTA
43474091 TAGAATTACGAAATACCCTGTAGG
1 TAGAATTACGAAATACCCTGTAGG
43474115 TAGAATTACGAAATACCCTGTAGG
1 TAGAATTACGAAATACCCTGTAGG
43474139 TAGAATTACGAAATACCCTGTAGG
1 TAGAATTACGAAATACCCTGTAGG
43474163 TAGAATTACGAAATACCCCTGTAGGG
1 TAGAATTACGAAATA-CCCTGTA-GG
43474189 TAGAATTAC-AAATACCCCTGTAGG
1 TAGAATTACGAAATA-CCCTGTAGG
43474213 TAGAATTACG-AATACCCTGTAGGG
1 TAGAATTACGAAATACCCTGTA-GG
43474237 TAGAATTACGAAATACCCCTGTAGG
1 TAGAATTACGAAATA-CCCTGTAGG
*
43474262 TAGAA-TACTAAATACCCTGTAGG
1 TAGAATTACGAAATACCCTGTAGG
* * * *
43474285 TGGAATTACGAGATACCTTGTGGG
1 TAGAATTACGAAATACCCTGTAGG
*
43474309 TAAAATTAC
1 TAGAATTAC
43474318 CATTTTGCCC
Statistics
Matches: 188, Mismatches: 8, Indels: 14
0.90 0.04 0.07
Matches are distributed among these distances:
23 20 0.11
24 119 0.63
25 31 0.16
26 18 0.10
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (24 bp):
TAGAATTACGAAATACCCTGTAGG
Found at i:43474329 original size:122 final size:122
Alignment explanation
Indices: 43474091--43474317 Score: 363
Period size: 122 Copynumber: 1.9 Consensus size: 122
43474081 ATAACCCTTA
43474091 TAGAATTACGAAATACCCTGTAGGTAGAATTACGAAATACCCTGTAGGTAGAATTACGAAATACC
1 TAGAATTACGAAATACCCTGTAGGTAGAATTACGAAATACCCTGTAGGTAGAATTACGAAATACC
*
43474156 CTGTAGGTAGAATTACGAAATACCCCTGTAGGGTAGAATTACAAATACCCCTGTAGG
66 CTGTAGGTAGAATTACGAAATACCCCTGTAGGGTAAAATTACAAATACCCCTGTAGG
*
43474213 TAGAATTACG-AATACCCTGTAGGGTAGAATTACGAAATACCCCTGTAGGTAGAA-TACTAAATA
1 TAGAATTACGAAATACCCTGTA-GGTAGAATTACGAAATA-CCCTGTAGGTAGAATTACGAAATA
* * *
43474276 CCCTGTAGGTGGAATTACGAGATA-CCTTGT-GGGTAAAATTAC
64 CCCTGTAGGTAGAATTACGAAATACCCCTGTAGGGTAAAATTAC
43474318 CATTTTGCCC
Statistics
Matches: 98, Mismatches: 5, Indels: 6
0.90 0.05 0.06
Matches are distributed among these distances:
120 11 0.11
121 16 0.16
122 57 0.58
123 14 0.14
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (122 bp):
TAGAATTACGAAATACCCTGTAGGTAGAATTACGAAATACCCTGTAGGTAGAATTACGAAATACC
CTGTAGGTAGAATTACGAAATACCCCTGTAGGGTAAAATTACAAATACCCCTGTAGG
Found at i:43474792 original size:22 final size:22
Alignment explanation
Indices: 43474740--43474804 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
43474730 TTAAAGCCTT
* *
43474740 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
43474762 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
43474784 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
43474805 ATTATTTGCC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:43474998 original size:26 final size:27
Alignment explanation
Indices: 43474962--43475035 Score: 105
Period size: 27 Copynumber: 2.8 Consensus size: 27
43474952 ATTCTGTTAA
* *
43474962 GTGGCTTTGCCACATTATCTGT-TCTG
1 GTGGCTCTGCCACAATATCTGTATCTG
43474988 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTATCTG
* *
43475015 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
43475036 ATAACTGAGC
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
26 20 0.47
27 23 0.53
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTATCTG
Found at i:43475205 original size:19 final size:19
Alignment explanation
Indices: 43475183--43475240 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
43475173 TTCTGATTTT
43475183 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
*
43475202 TGATTCTG--A--T--T-T
1 TGATTCTGTTACCTGATAC
43475214 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
43475233 TGATTCTG
1 TGATTCTG
43475241 ATTCTGATTC
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 8 0.27
13 1 0.03
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
19 16 0.53
ACGTcount: A:0.19, C:0.17, G:0.17, T:0.47
Consensus pattern (19 bp):
TGATTCTGTTACCTGATAC
Found at i:43475210 original size:6 final size:6
Alignment explanation
Indices: 43475172--43475291 Score: 86
Period size: 6 Copynumber: 19.3 Consensus size: 6
43475162 TTGCATTCAC
* * *
43475172 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
43475222 -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
43475272 ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
43475292 AATGTTTCTT
Statistics
Matches: 90, Mismatches: 12, Indels: 24
0.71 0.10 0.19
Matches are distributed among these distances:
5 6 0.07
6 67 0.74
7 14 0.16
8 3 0.03
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:43475267 original size:37 final size:31
Alignment explanation
Indices: 43475172--43475307 Score: 168
Period size: 31 Copynumber: 4.4 Consensus size: 31
43475162 TTGCATTCAC
*
43475172 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTCTGATTCTGTTACCTGATACTG
*
43475204 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
* * *
43475235 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
*
43475266 ATTCTGATTCTGATTCTAGTT--CTGATAATG
1 ATTCTGATTCTGATTCT-GTTACCTGATACTG
* *
43475296 TTTCTTATTCTG
1 ATTCTGATTCTG
43475308 TAATGGGTTA
Statistics
Matches: 93, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
30 16 0.17
31 68 0.73
32 9 0.10
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTG
Found at i:43477289 original size:27 final size:27
Alignment explanation
Indices: 43477208--43477433 Score: 193
Period size: 27 Copynumber: 8.7 Consensus size: 27
43477198 TTAGTTTACC
*
43477208 AAATTA-CAAAATA-CCCTGGTTTGT-
1 AAATTACCAAAATACCCCTAGTTTGTA
* * * *
43477232 AAATTACTAAAATA-CCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTA
43477258 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
43477285 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
43477312 AAATTATCAAAATACCCC-AG-TTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
43477337 AAATTACCAAAATACCCCT-GATTTGT-
1 AAATTACCAAAATACCCCTAG-TTTGTA
* ** * * **
43477363 GAATTACTGAAATACCTCGA-CCTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
** **
43477389 AAATTATTAAAATA-CCCTCAAATTGTA
1 AAATTACCAAAATACCCCT-AGTTTGTA
*
43477416 AAATTACCAAAGTACCCC
1 AAATTACCAAAATACCCC
43477434 CGATTTATAG
Statistics
Matches: 163, Mismatches: 28, Indels: 18
0.78 0.13 0.09
Matches are distributed among these distances:
24 6 0.04
25 43 0.26
26 40 0.25
27 71 0.44
28 3 0.02
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTTTGTA
Found at i:43477339 original size:79 final size:78
Alignment explanation
Indices: 43477208--43477450 Score: 237
Period size: 79 Copynumber: 3.1 Consensus size: 78
43477198 TTAGTTTACC
*** *
43477208 AAATTA-CAAAATA-CCCTGGTTTGT-AAATTA-CTAAAATACCTTGGTTTATAAAATTACCAAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTATC-AAAATACCCCAG-TTGTAAAATTACCAAA
43477269 ATACCCCT-AGTTTGT
64 ATACCCCTGA-TTTGT
43477284 AAAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAAATACCCCAGTTGTAAAATTACCAAAA
1 -AAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAAATACCCCAGTTGTAAAATTACCAAAA
43477349 TACCCCTGATTTGT
65 TACCCCTGATTTGT
* ** * *** * *
43477363 GAATTACTGAAATACCTC-GACCTGTAAAATTATTAAAATACCCTCAAATTGTAAAATTACCAAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAAATACCC-C-AGTTGTAAAATTACCAAA
* * *
43477427 GTACCCCCGATTTAT
64 ATACCCCTGATTTGT
43477442 AGAATTACC
1 A-AATTACC
43477451 GTTTTACCCT
Statistics
Matches: 140, Mismatches: 18, Indels: 13
0.82 0.11 0.08
Matches are distributed among these distances:
77 27 0.19
78 22 0.16
79 68 0.49
80 22 0.16
81 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.30
Consensus pattern (78 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAAATACCCCAGTTGTAAAATTACCAAAAT
ACCCCTGATTTGT
Found at i:43477356 original size:52 final size:52
Alignment explanation
Indices: 43477208--43477362 Score: 208
Period size: 52 Copynumber: 3.0 Consensus size: 52
43477198 TTAGTTTACC
** * * *
43477208 AAATTACAAAATACCCTGGTTTGT-AAATTACTAAAATA-CCTTGGTTTATA
1 AAATTACAAAATACCCCAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
43477258 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
1 AAATTA-CAAAATACCCC-AGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
*
43477312 AAATTATCAAAATACCCCAG-TTGTAAAATTACCAAAATACCCCTGATTTGT
1 AAATTA-CAAAATACCCCAGTTTGTAAAATTACCAAAATACCCCTGGTTTGT
43477363 GAATTACTGA
Statistics
Matches: 94, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
50 6 0.06
51 10 0.11
52 36 0.38
53 15 0.16
54 27 0.29
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (52 bp):
AAATTACAAAATACCCCAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
Found at i:43477389 original size:52 final size:52
Alignment explanation
Indices: 43477232--43477433 Score: 160
Period size: 52 Copynumber: 3.9 Consensus size: 52
43477222 CCTGGTTTGT
* * * * * **
43477232 AAATTACTAAAATA-CCTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTATCAAAATACCCC-A-CCTGTA
* **
43477285 AAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAAATACCCCAGTTGTA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTATCAAAATACCCCACCTGTA
* * *
43477337 AAATTACCAAAATACCCCTGATTTGT-GAATTA-CTGAAATACCTCGACCTGTA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTATC-AAAATACC-CCACCTGTA
** * * * *
43477389 AAATTATTAAAATA-CCCTCAAATTGTAAAATTACCAAAGTACCCC
1 AAATTACCAAAATACCCCT-GATTTGTAAAATTATCAAAATACCCC
43477434 CGATTTATAG
Statistics
Matches: 124, Mismatches: 19, Indels: 13
0.79 0.12 0.08
Matches are distributed among these distances:
50 1 0.01
51 16 0.13
52 54 0.44
53 25 0.20
54 28 0.23
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (52 bp):
AAATTACCAAAATACCCCTGATTTGTAAAATTATCAAAATACCCCACCTGTA
Found at i:43477458 original size:27 final size:27
Alignment explanation
Indices: 43477428--43477573 Score: 181
Period size: 27 Copynumber: 5.5 Consensus size: 27
43477418 ATTACCAAAG
* *
43477428 TACCCCCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTATCGTTT
* * * *
43477455 TACCCTCAATTTATAAAATTACCATTT
1 TACCCTCGATTTATAGAATTATCGTTT
* *
43477482 TACCCTCGATTT-TCAAAATTATC-ATT
1 TACCCTCGATTTAT-AGAATTATCGTTT
43477508 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTATAGAATTATCGTTT
43477535 TACCCTCGATTTATAGAATTATCG-TT
1 TACCCTCGATTTATAGAATTATCGTTT
*
43477561 TACGCTCGATTTA
1 TACCCTCGATTTA
43477574 CAAATTACTG
Statistics
Matches: 106, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
26 37 0.35
27 69 0.65
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTATCGTTT
Found at i:43477459 original size:131 final size:132
Alignment explanation
Indices: 43477208--43477478 Score: 280
Period size: 131 Copynumber: 2.1 Consensus size: 132
43477198 TTAGTTTACC
* * ***
43477208 AAATTA-CAAAATACCCTGGTTTGTAAATTACTAAAATACCTTGGTTTATAAAATTACCAAAATA
1 AAATTACCAAAATACCCTGATTTGTAAATTACTAAAATACCTCGACCTATAAAATTACCAAAATA
** * * * * *
43477272 CCCCTAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAAATACCC-C-AGTTG
66 CCCCTAAATTGTAAAATTACCAAAATACCCCCGATTTATAAAATTACCAAAATACCCTCAAGTTA
43477335 TA
131 TA
* * * **
43477337 AAATTACCAAAATACCCCTGATTTGTGAATTACTGAAATACCTCGACCTGTAAAATTATTAAAAT
1 AAATTACCAAAATA-CCCTGATTTGTAAATTACTAAAATACCTCGACCTATAAAATTACCAAAAT
* * **** *
43477402 A-CCCTCAAATTGTAAAATTACCAAAGTACCCCCGATTTATAGAATTACCGTTTTACCCTCAATT
65 ACCCCT-AAATTGTAAAATTACCAAAATACCCCCGATTTATAAAATTACCAAAATACCCTCAAGT
43477466 TATA
129 TATA
43477470 AAATTACCA
1 AAATTACCA
43477479 TTTTACCCTC
Statistics
Matches: 113, Mismatches: 24, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
129 6 0.05
130 11 0.10
131 81 0.72
132 1 0.01
133 14 0.12
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.31
Consensus pattern (132 bp):
AAATTACCAAAATACCCTGATTTGTAAATTACTAAAATACCTCGACCTATAAAATTACCAAAATA
CCCCTAAATTGTAAAATTACCAAAATACCCCCGATTTATAAAATTACCAAAATACCCTCAAGTTA
TA
Found at i:43477523 original size:80 final size:79
Alignment explanation
Indices: 43477428--43477577 Score: 219
Period size: 80 Copynumber: 1.9 Consensus size: 79
43477418 ATTACCAAAG
*
43477428 TACCCCCGATTTATAGAATTACCGTTTTACCCTCAATTTATAAAATTACCATTTTACCCTCGATT
1 TACCCCCGATTTATAGAATTACCGTTTTACCCTCAATTTATAAAATTACC-GTTTACCCTCGATT
*
43477493 TTCAAAATTATCATT
65 TACAAAATTATCATT
* * * * * *
43477508 TACCCTCGATTTATAGAATTATCGTTTTACCCTCGATTTATAGAATTATCGTTTACGCTCGATTT
1 TACCCCCGATTTATAGAATTACCGTTTTACCCTCAATTTATAAAATTACCGTTTACCCTCGATTT
43477573 ACAAA
66 ACAAA
43477578 TTACTGAAAT
Statistics
Matches: 62, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.40
Consensus pattern (79 bp):
TACCCCCGATTTATAGAATTACCGTTTTACCCTCAATTTATAAAATTACCGTTTACCCTCGATTT
ACAAAATTATCATT
Found at i:43477536 original size:53 final size:53
Alignment explanation
Indices: 43477414--43477581 Score: 169
Period size: 53 Copynumber: 3.2 Consensus size: 53
43477404 CCTCAAATTG
*** * * * * *
43477414 TAAAATTACCAAAGTACCCCCGATTTATAGAATTACCGTTTTACCCTCAATTTA
1 TAAAATTACCATTTTACCCTCGATTTATAAAATTATC-ATTTACCCTCGATTTA
43477468 TAAAATTACCATTTTACCCTCGATTT-TCAAAATTATCATTTACCCTCGATTTA
1 TAAAATTACCATTTTACCCTCGATTTAT-AAAATTATCATTTACCCTCGATTTA
* * * * * *
43477521 TAGAATTATCGTTTTACCCTCGATTTATAGAATTATCGTTTACGCTCGATTTA
1 TAAAATTACCATTTTACCCTCGATTTATAAAATTATCATTTACCCTCGATTTA
*
43477574 -CAAATTAC
1 TAAAATTAC
43477582 TGAAATACCC
Statistics
Matches: 95, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
52 5 0.05
53 60 0.63
54 30 0.32
ACGTcount: A:0.32, C:0.21, G:0.08, T:0.39
Consensus pattern (53 bp):
TAAAATTACCATTTTACCCTCGATTTATAAAATTATCATTTACCCTCGATTTA
Found at i:43477703 original size:26 final size:27
Alignment explanation
Indices: 43477576--43477817 Score: 302
Period size: 27 Copynumber: 9.3 Consensus size: 27
43477566 TCGATTTACA
* * *
43477576 AATTACTGAAATACCCATGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
43477603 AATTACCGAAATACCCATGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
43477630 AACTACCGAAATACCCCAGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
43477657 AATTA-CG-AATA-CCCTGTAGGGTA-
1 AATTACCGAAATACCCCTGTAGGGTAG
43477680 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
43477707 AATTACCG-AATA-CCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
43477732 AATTACCGAAATACCCCTGTA-GGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
43477758 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
43477785 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
43477811 AATTACC
1 AATTACC
43477818 ATTTTGCCCC
Statistics
Matches: 191, Mismatches: 17, Indels: 15
0.86 0.08 0.07
Matches are distributed among these distances:
23 5 0.03
24 13 0.07
25 29 0.15
26 62 0.32
27 82 0.43
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:43477708 original size:104 final size:104
Alignment explanation
Indices: 43477575--43477817 Score: 314
Period size: 104 Copynumber: 2.3 Consensus size: 104
43477565 CTCGATTTAC
* *
43477575 AAATTACTGAAATACCCATGTAAGGTAGAATTACCGAAATACCCATGTAAGGTAGAACTACCGAA
1 AAATTACCGAAATACCCATGTAGGGTAGAATTACCG-AATACCC-TGTAAGGTAGAACTACCGAA
*
43477640 ATACCCCAGTAGGGTAGAATTAC-GAATA-CCCTGTAGGGT-
64 ATACCCCAGTA-GGTAGAATTACAAAATACCCCTGTAGGGTG
* * *
43477679 AAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAATACCCTGTAGGGTAGAATTACCGAAAT
1 AAATTACCGAAATACCCATGTAGGGTAGAATTACCGAATACCCTGTAAGGTAGAACTACCGAAAT
*
43477744 ACCCCTGTAGGTAGAATTACTAAAATACCCCTGTAGGGTG
66 ACCCCAGTAGGTAGAATTAC-AAAATACCCCTGTAGGGTG
* * * * *
43477784 GAATTACCGAGATA-CCTTGTGGGGTAAAATTACC
1 AAATTACCGAAATACCCATGTAGGGTAGAATTACC
43477818 ATTTTGCCCC
Statistics
Matches: 123, Mismatches: 12, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
101 11 0.09
102 28 0.23
103 11 0.09
104 61 0.50
105 12 0.10
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.23
Consensus pattern (104 bp):
AAATTACCGAAATACCCATGTAGGGTAGAATTACCGAATACCCTGTAAGGTAGAACTACCGAAAT
ACCCCAGTAGGTAGAATTACAAAATACCCCTGTAGGGTG
Found at i:43478271 original size:21 final size:22
Alignment explanation
Indices: 43478245--43478306 Score: 72
Period size: 21 Copynumber: 2.9 Consensus size: 22
43478235 AAGCCTTCTG
* *
43478245 ATTATGGCTTTGTGTCAAACTC
1 ATTATGGCTCTGTGCCAAACTC
* *
43478267 A-TATGGCTCTGTGCCAACCTG
1 ATTATGGCTCTGTGCCAAACTC
*
43478288 ATTATGGCTGTGTGCCAAA
1 ATTATGGCTCTGTGCCAAA
43478307 TGTATTTGCC
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
21 17 0.52
22 16 0.48
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.34
Consensus pattern (22 bp):
ATTATGGCTCTGTGCCAAACTC
Found at i:43478295 original size:22 final size:22
Alignment explanation
Indices: 43478242--43478306 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
43478232 TTAAAGCCTT
* *
43478242 CTGATTATGGCTTTGTGTCAAA
1 CTGATTATGGCTCTGTGCCAAA
* *
43478264 CTCA-TATGGCTCTGTGCCAAC
1 CTGATTATGGCTCTGTGCCAAA
*
43478285 CTGATTATGGCTGTGTGCCAAA
1 CTGATTATGGCTCTGTGCCAAA
43478307 TGTATTTGCC
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
21 17 0.49
22 18 0.51
ACGTcount: A:0.22, C:0.22, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAA
Found at i:43478500 original size:26 final size:27
Alignment explanation
Indices: 43478464--43478535 Score: 85
Period size: 26 Copynumber: 2.7 Consensus size: 27
43478454 ATTCTGTTAA
* *
43478464 GTGGCTTTGCCACATTATCTAT-TCTG
1 GTGGCTCTGCCACAATATCTATATCTG
*
43478490 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTATATCTG
* *
43478517 GTGACTCAG-CACAATATCT
1 GTGGCTCTGCCACAATATCT
43478536 GATAACTGAG
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 29 0.73
27 11 0.28
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.35
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTATATCTG
Found at i:43478709 original size:6 final size:6
Alignment explanation
Indices: 43478694--43478781 Score: 72
Period size: 6 Copynumber: 14.3 Consensus size: 6
43478684 ATTCTGTTAG
* * * *
43478694 CTGATA CTGATT CTGATT TTGATT CTG-TT ACCTGATA CTGATT CTAATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* *
43478743 CTGATT CTG-TCAC CTAATT CTGATT CTGATT CTGATT CT
1 CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT CT
43478782 AGTTCTAATT
Statistics
Matches: 65, Mismatches: 11, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
5 3 0.05
6 55 0.85
7 5 0.08
8 2 0.03
ACGTcount: A:0.20, C:0.19, G:0.14, T:0.47
Consensus pattern (6 bp):
CTGATT
Found at i:43478716 original size:31 final size:31
Alignment explanation
Indices: 43478682--43478781 Score: 146
Period size: 31 Copynumber: 3.2 Consensus size: 31
43478672 TTTTGATTTT
* *
43478682 TGATTCTGTTAGCTGATACTGATTCTGATTT
1 TGATTCTGTTACCTGATACTGATTCTGATTC
*
43478713 TGATTCTGTTACCTGATACTGATTCTAATTC
1 TGATTCTGTTACCTGATACTGATTCTGATTC
* * *
43478744 TGATTCTGTCACCTAATTCTGATTCTGATTC
1 TGATTCTGTTACCTGATACTGATTCTGATTC
43478775 TGATTCT
1 TGATTCT
43478782 AGTTCTAATT
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 62 1.00
ACGTcount: A:0.20, C:0.18, G:0.15, T:0.47
Consensus pattern (31 bp):
TGATTCTGTTACCTGATACTGATTCTGATTC
Found at i:43480677 original size:27 final size:27
Alignment explanation
Indices: 43480647--43480878 Score: 215
Period size: 27 Copynumber: 8.6 Consensus size: 27
43480637 TTAGTTTACC
43480647 AAATTATCAAAATACCCCTGGTTTGTA
1 AAATTATCAAAATACCCCTGGTTTGTA
* *
43480674 AAATTA-CTAAAATACCCTTGGTTTATA
1 AAATTATC-AAAATACCCCTGGTTTGTA
*
43480701 AAATTA-CGAAAATACCCCTAGTTTGTA
1 AAATTATC-AAAATACCCCTGGTTTGTA
*
43480728 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTATCAAAATACCCCTGGTTTGTA
**
43480755 AAATTATCAAAATACCCCCAGTTTGTA
1 AAATTATCAAAATACCCCTGGTTTGTA
* ** *
43480782 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTATCAAAATACCCCTGGTTTGTA
**
43480809 AAATTA-CTAAAAT--CCCTCGACTTGTA
1 AAATTATC-AAAATACCCCT-GGTTTGTA
** ***
43480835 AAATTATTGAAATA-CCCTCGACCTGTA
1 AAATTATCAAAATACCCCT-GGTTTGTA
*
43480862 AAATTATTAAAATACCC
1 AAATTATCAAAATACCC
43480879 TCAACTTGTA
Statistics
Matches: 177, Mismatches: 21, Indels: 13
0.84 0.10 0.06
Matches are distributed among these distances:
25 4 0.02
26 17 0.10
27 153 0.86
28 3 0.02
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTATCAAAATACCCCTGGTTTGTA
Found at i:43480784 original size:81 final size:80
Alignment explanation
Indices: 43480647--43480907 Score: 278
Period size: 81 Copynumber: 3.2 Consensus size: 80
43480637 TTAGTTTACC
* * * *
43480647 AAATTATCAAAATACCCCTGGTTTGTAAAATTA-CTAAAATACCCTTGGTTTATAAAATTACGAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTATC-AAAATACCC-TCGTTTGTAAAATTACCAA
*
43480711 AATACCCCTAGTTTGTA
64 AATACCCCTAATTTGTA
*
43480728 AAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAAATACCCCCAGTTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAAATACCCTC-GTTTGTAAAATTACCAAA
*
43480793 ATACCCCTAATTTGTG
65 ATACCCCTAATTTGTA
* ** ** ** **
43480809 AAATTACTAAAAT--CCCTCGACTTGTAAAATTATTGAAATACCCTCGACCTGTAAAATTATTAA
1 AAATTACCAAAATACCCCT-GGTTTGTAAAATTATCAAAATACCCTCG-TTTGTAAAATTACCAA
*
43480872 AATA-CCCTCAACTTGTA
64 AATACCCCT-AATTTGTA
*
43480889 AAATTACCAAAGTACCCCT
1 AAATTACCAAAATACCCCT
43480908 AAATTATAAA
Statistics
Matches: 152, Mismatches: 21, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
79 9 0.06
80 55 0.36
81 83 0.55
82 5 0.03
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (80 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAAATACCCTCGTTTGTAAAATTACCAAAA
TACCCCTAATTTGTA
Found at i:43480807 original size:54 final size:54
Alignment explanation
Indices: 43480647--43480907 Score: 253
Period size: 54 Copynumber: 4.9 Consensus size: 54
43480637 TTAGTTTACC
** * * * *
43480647 AAATTATCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTATCAAAATACCCCCAGTTTGTAAAATTACCAAAATACCCCTGATTTGTA
* *
43480701 AAATTA-CGAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
1 AAATTATC-AAAATACCCCCAGTTTGTAAAATTACCAAAATACCCCTGATTTGTA
* *
43480755 AAATTATCAAAATACCCCCAGTTTGTAAAATTACCAAAATACCCCTAATTTGTG
1 AAATTATCAAAATACCCCCAGTTTGTAAAATTACCAAAATACCCCTGATTTGTA
* * *** **
43480809 AAATTA-CTAAAAT-CCCTC-GACTTGTAAAATTATTGAAATA-CCCTCGACCTGTA
1 AAATTATC-AAAATACCCCCAG-TTTGTAAAATTACCAAAATACCCCT-GATTTGTA
* * ** *
43480862 AAATTATTAAAATACCCTCAACTTGTAAAATTACCAAAGTACCCCT
1 AAATTATCAAAATACCCCCAGTTTGTAAAATTACCAAAATACCCCT
43480908 AAATTATAAA
Statistics
Matches: 175, Mismatches: 23, Indels: 17
0.81 0.11 0.08
Matches are distributed among these distances:
52 5 0.03
53 37 0.21
54 128 0.73
55 5 0.03
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (54 bp):
AAATTATCAAAATACCCCCAGTTTGTAAAATTACCAAAATACCCCTGATTTGTA
Found at i:43480904 original size:27 final size:27
Alignment explanation
Indices: 43480669--43480905 Score: 167
Period size: 27 Copynumber: 8.8 Consensus size: 27
43480659 TACCCCTGGT
* ****
43480669 TTGTAAAATTACTAAAATACCCTTGGT
1 TTGTAAAATTACCAAAATACCCTCAAC
* * **
43480696 TTATAAAATTACGAAAATACCC-CTAGT
1 TTGTAAAATTACCAAAATACCCTC-AAC
***
43480723 TTGTAAAATTACCAAAATACCC-CTGGT
1 TTGTAAAATTACCAAAATACCCTC-AAC
* * **
43480750 TTGTAAAATTATCAAAATACCCCCAGT
1 TTGTAAAATTACCAAAATACCCTCAAC
*
43480777 TTGTAAAATTACCAAAATACCC-CTAAT
1 TTGTAAAATTACCAAAATACCCTC-AAC
* * *
43480804 TTGTGAAATTACTAAAAT-CCCTCGAC
1 TTGTAAAATTACCAAAATACCCTCAAC
*** *
43480830 TTGTAAAATTATTGAAATACCCTCGAC
1 TTGTAAAATTACCAAAATACCCTCAAC
* **
43480857 CTGTAAAATTATTAAAATACCCTCAAC
1 TTGTAAAATTACCAAAATACCCTCAAC
*
43480884 TTGTAAAATTACCAAAGTACCC
1 TTGTAAAATTACCAAAATACCC
43480906 CTAAATTATA
Statistics
Matches: 180, Mismatches: 25, Indels: 10
0.84 0.12 0.05
Matches are distributed among these distances:
26 20 0.11
27 159 0.88
28 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCTCAAC
Found at i:43480955 original size:27 final size:25
Alignment explanation
Indices: 43480915--43481053 Score: 136
Period size: 27 Copynumber: 5.3 Consensus size: 25
43480905 CCTAAATTAT
* *
43480915 AAATTACCTTTTACCCTCAATTTAT
1 AAATTACCTTTTACCCTCGATTTAC
43480940 AACATTACCATTTTACCCTCGATTTAC
1 AA-ATTACC-TTTTACCCTCGATTTAC
* *
43480967 AAAATTACCGTTTACTCTCGA-TTAC
1 -AAATTACCTTTTACCCTCGATTTAC
* * *
43480992 AGAATTATCGTTTTACCCTCAATTTATA
1 A-AATTA-CCTTTTACCCTCGATTTA-C
43481020 AAATTACCATTTTACCCTCGATTTAC
1 AAATTACC-TTTTACCCTCGATTTAC
43481046 AATATTAC
1 AA-ATTAC
43481054 TGAAATACCC
Statistics
Matches: 93, Mismatches: 12, Indels: 16
0.77 0.10 0.13
Matches are distributed among these distances:
24 1 0.01
25 11 0.12
26 29 0.31
27 49 0.53
28 3 0.03
ACGTcount: A:0.32, C:0.24, G:0.04, T:0.40
Consensus pattern (25 bp):
AAATTACCTTTTACCCTCGATTTAC
Found at i:43480971 original size:79 final size:79
Alignment explanation
Indices: 43480888--43481053 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
43480878 CTCAACTTGT
* *
43480888 AAAATTACCAAAGTACCCCTAAATTATA-AATTA-CCTTTTACCCTCAATTTATAACATTACCAT
1 AAAATTACC-AAGTA-CCCTAAATTACAGAATTATCCTTTTACCCTCAATTTATAAAATTACCAT
43480951 TTTACCCTCGATTTAC
64 TTTACCCTCGATTTAC
*** * ** *
43480967 AAAATTACCGTTTACTCTCGATTACAGAATTATCGTTTTACCCTCAATTTATAAAATTACCATTT
1 AAAATTACCAAGTACCCTAAATTACAGAATTATCCTTTTACCCTCAATTTATAAAATTACCATTT
43481032 TACCCTCGATTTAC
66 TACCCTCGATTTAC
*
43481046 AATATTAC
1 AAAATTAC
43481054 TGAAATACCC
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
77 8 0.11
78 7 0.09
79 60 0.80
ACGTcount: A:0.35, C:0.23, G:0.04, T:0.37
Consensus pattern (79 bp):
AAAATTACCAAGTACCCTAAATTACAGAATTATCCTTTTACCCTCAATTTATAAAATTACCATTT
TACCCTCGATTTAC
Found at i:43481079 original size:27 final size:27
Alignment explanation
Indices: 43481049--43481277 Score: 244
Period size: 27 Copynumber: 8.5 Consensus size: 27
43481039 GATTTACAAT
* *
43481049 ATTACTGAAATACCCATGTAAGGTAGA
1 ATTACCGAAATACCCCTGTAAGGTAGA
*
43481076 ATTACCGAAATACCCATGTAAGGTAGA
1 ATTACCGAAATACCCCTGTAAGGTAGA
* *
43481103 ACTACCGAAATACCCCTGTAGGGTAGA
1 ATTACCGAAATACCCCTGTAAGGTAGA
* * ** *
43481130 ATTACCGGAATACCACTACAGGGTAGA
1 ATTACCGAAATACCCCTGTAAGGTAGA
* *
43481157 ATTACCGAAATACCCCTATAGGGTAGA
1 ATTACCGAAATACCCCTGTAAGGTAGA
* * * *
43481184 ATTACTGGAATACCCCTGTAGGGTAAA
1 ATTACCGAAATACCCCTGTAAGGTAGA
*
43481211 ATTACCGAAATACCCCTGTAAGGAAGA
1 ATTACCGAAATACCCCTGTAAGGTAGA
** * * *
43481238 ATTACTAAAATACCCCTATAGGGTGGA
1 ATTACCGAAATACCCCTGTAAGGTAGA
*
43481265 ATTA-CGAGATACC
1 ATTACCGAAATACC
43481278 TTGTGGGGTA
Statistics
Matches: 172, Mismatches: 30, Indels: 1
0.85 0.15 0.00
Matches are distributed among these distances:
26 6 0.03
27 166 0.97
ACGTcount: A:0.38, C:0.21, G:0.20, T:0.22
Consensus pattern (27 bp):
ATTACCGAAATACCCCTGTAAGGTAGA
Found at i:43481773 original size:22 final size:22
Alignment explanation
Indices: 43481721--43481776 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
43481711 TTAAAGCCTT
* * *
43481721 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTATGCCAAC
*
43481743 CT-ACATATGGCTCTATGCCAAC
1 CTGA-TTATGGCTCTATGCCAAC
43481765 CTGATTATGGCT
1 CTGATTATGGCT
43481777 GTGTTCCAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
21 1 0.04
22 25 0.93
23 1 0.04
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.36
Consensus pattern (22 bp):
CTGATTATGGCTCTATGCCAAC
Found at i:43481785 original size:22 final size:22
Alignment explanation
Indices: 43481721--43481785 Score: 53
Period size: 22 Copynumber: 3.0 Consensus size: 22
43481711 TTAAAGCCTT
*
43481721 CTGATTATGGCTTTGTGT-CAAC
1 CTGATTATGGCTCTGT-TCCAAC
* * *
43481743 CT-ACATATGGCTCTATGCCAAC
1 CTGA-TTATGGCTCTGTTCCAAC
*
43481765 CTGATTATGGCTGTGTTCCAA
1 CTGATTATGGCTCTGTTCCAA
43481786 ACGTTTTTGC
Statistics
Matches: 32, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
21 1 0.03
22 30 0.94
23 1 0.03
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (22 bp):
CTGATTATGGCTCTGTTCCAAC
Found at i:43481980 original size:26 final size:27
Alignment explanation
Indices: 43481943--43482017 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 27
43481933 TATTCTGTTA
* *
43481943 AGTGGCTTTGCCACATTATCTGT-TCT
1 AGTGGCTCTGCCACAATATCTGTATCT
43481969 AGTGGCTCTGCCACAATATCTGTATCT
1 AGTGGCTCTGCCACAATATCTGTATCT
* * *
43481996 GGTGACTCTGTCACAATATCTG
1 AGTGGCTCTGCCACAATATCTG
43482018 ATAACTGAGT
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
26 21 0.49
27 22 0.51
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.36
Consensus pattern (27 bp):
AGTGGCTCTGCCACAATATCTGTATCT
Found at i:43482189 original size:19 final size:19
Alignment explanation
Indices: 43482167--43482210 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
43482157 TTGATTTTTT
43482167 ATTCTGTTACCTGATACTG
1 ATTCTGTTACCTGATACTG
43482186 ATTCTGTTACCTGATACTG
1 ATTCTGTTACCTGATACTG
43482205 ATTCTG
1 ATTCTG
43482211 ATTCTGATTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.20, C:0.20, G:0.16, T:0.43
Consensus pattern (19 bp):
ATTCTGTTACCTGATACTG
Found at i:43482218 original size:31 final size:31
Alignment explanation
Indices: 43482177--43482277 Score: 116
Period size: 31 Copynumber: 3.3 Consensus size: 31
43482167 ATTCTGTTAC
*
43482177 CTGATACTGATTCTGTTACCTGATACTGATT
1 CTGATTCTGATTCTGTTACCTGATACTGATT
* * *
43482208 CTGATTCTGATTCTGTCACCTAATTCTGATT
1 CTGATTCTGATTCTGTTACCTGATACTGATT
* *
43482239 CTGATTCTGATTCTAGTT--CTGATAATGTTT
1 CTGATTCTGATTCT-GTTACCTGATACTGATT
*
43482269 CTTATTCTG
1 CTGATTCTG
43482278 TAATGGGTTA
Statistics
Matches: 59, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
30 16 0.27
31 41 0.69
32 2 0.03
ACGTcount: A:0.20, C:0.19, G:0.15, T:0.47
Consensus pattern (31 bp):
CTGATTCTGATTCTGTTACCTGATACTGATT
Found at i:43482219 original size:6 final size:6
Alignment explanation
Indices: 43482177--43482261 Score: 68
Period size: 6 Copynumber: 13.8 Consensus size: 6
43482167 ATTCTGTTAC
* * *
43482177 CTGATA CTGATT CTG-TT ACCTGATA CTGATT CTGATT CTGATT CTG-TCAC
1 CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT CTGATT CTGAT--T
*
43482227 CTAATT CTGATT CTGATT CTGATT CT-AGTT CTGAT
1 CTGATT CTGATT CTGATT CTGATT CTGA-TT CTGAT
43482262 AATGTTTCTT
Statistics
Matches: 64, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
5 4 0.06
6 52 0.81
7 6 0.09
8 2 0.03
ACGTcount: A:0.20, C:0.20, G:0.15, T:0.45
Consensus pattern (6 bp):
CTGATT
Found at i:43484182 original size:27 final size:26
Alignment explanation
Indices: 43484152--43484330 Score: 198
Period size: 27 Copynumber: 6.6 Consensus size: 26
43484142 TTAGTTTACC
*
43484152 AAATTATCAAAATACCCCTGGTTTGTA
1 AAATTA-CAAAATACCCCTAGTTTGTA
* * *
43484179 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTAC-AAAATACCCCTAGTTTGTA
43484206 AAATTACGAAAATACCCCTAGTTTGTA
1 AAATTAC-AAAATACCCCTAGTTTGTA
*
43484233 AAATTTCCAAAATACCCCTAGTTTGTA
1 AAA-TTACAAAATACCCCTAGTTTGTA
*
43484260 AAATTGTCAAAATACCCCTAGTTTGTA
1 AAATT-ACAAAATACCCCTAGTTTGTA
* * *
43484287 ATATTACCAAAATACCACT-GATTTGTG
1 AAATTA-CAAAATACCCCTAG-TTTGTA
43484314 AAATTACTAAAATACCC
1 AAATTAC-AAAATACCC
43484331 TCGACCTATA
Statistics
Matches: 132, Mismatches: 14, Indels: 12
0.84 0.09 0.08
Matches are distributed among these distances:
26 5 0.04
27 124 0.94
28 3 0.02
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (26 bp):
AAATTACAAAATACCCCTAGTTTGTA
Found at i:43484293 original size:81 final size:81
Alignment explanation
Indices: 43484152--43484330 Score: 218
Period size: 81 Copynumber: 2.2 Consensus size: 81
43484142 TTAGTTTACC
* * * * *
43484152 AAATTATCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATTACGAAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCCTAGTTTATAAAATTACCAAA
*
43484217 ATACCCCT-AGTTTGTA
66 ATACCACTGA-TTTGTA
* * * *
43484233 AAATTTCCAAAATACCCCTAGTTTGTAAAATT-GTCAAAATACCCCTAGTTTGTAATATTACCAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACT-AAAATACCCCTAGTTTATAAAATTACCAA
*
43484297 AATACCACTGATTTGTG
65 AATACCACTGATTTGTA
*
43484314 AAATTACTAAAATACCC
1 AAATTACCAAAATACCC
43484331 TCGACCTATA
Statistics
Matches: 83, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
80 1 0.01
81 81 0.98
82 1 0.01
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCCTAGTTTATAAAATTACCAAA
ATACCACTGATTTGTA
Found at i:43484344 original size:27 final size:27
Alignment explanation
Indices: 43484314--43484386 Score: 110
Period size: 27 Copynumber: 2.7 Consensus size: 27
43484304 CTGATTTGTG
* *
43484314 AAATTACTAAAATACCCTCGACCTATA
1 AAATTATTGAAATACCCTCGACCTATA
* *
43484341 AAATTATTGAAATACCCTTGACCTGTA
1 AAATTATTGAAATACCCTCGACCTATA
43484368 AAATTATTGAAATACCCTC
1 AAATTATTGAAATACCCTC
43484387 AACTTGTAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.30
Consensus pattern (27 bp):
AAATTATTGAAATACCCTCGACCTATA
Found at i:43484394 original size:27 final size:27
Alignment explanation
Indices: 43484314--43484399 Score: 109
Period size: 27 Copynumber: 3.2 Consensus size: 27
43484304 CTGATTTGTG
* * * *
43484314 AAATTACTAAAATACCCTCGACCTATA
1 AAATTATTGAAATACCCTCAACCTGTA
**
43484341 AAATTATTGAAATACCCTTGACCTGTA
1 AAATTATTGAAATACCCTCAACCTGTA
*
43484368 AAATTATTGAAATACCCTCAACTTGTA
1 AAATTATTGAAATACCCTCAACCTGTA
43484395 AAATT
1 AAATT
43484400 GCCAAAGTAC
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 52 1.00
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
AAATTATTGAAATACCCTCAACCTGTA
Found at i:43484437 original size:27 final size:27
Alignment explanation
Indices: 43484407--43484581 Score: 233
Period size: 27 Copynumber: 6.5 Consensus size: 27
43484397 ATTGCCAAAG
* *
43484407 TACCCCCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAAAATTACCATTT
** *
43484434 TACCCTTTATTTACAAAATTACCATTT
1 TACCCTCGATTTATAAAATTACCATTT
* *
43484461 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTATAAAATTACCATTT
* *
43484488 TACCCTCGATTAATAAAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCATTT
* * *
43484515 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTATAAAATTACCATTT
*
43484542 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAAAATTACCATTT
43484569 TACCCTCGATTTA
1 TACCCTCGATTTA
43484582 CAAATTTATT
Statistics
Matches: 131, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 131 1.00
ACGTcount: A:0.30, C:0.23, G:0.06, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCATTT
Found at i:43484623 original size:27 final size:27
Alignment explanation
Indices: 43484593--43484752 Score: 221
Period size: 27 Copynumber: 5.9 Consensus size: 27
43484583 AAATTTATTG
* * *
43484593 AAATACCCATGTAAGGTAAAATTACCA
1 AAATACCCCTGTAGGGTAGAATTACCA
**
43484620 AAATACCCCTGTAGGGTAGAATTTTCA
1 AAATACCCCTGTAGGGTAGAATTACCA
*
43484647 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCA
* * *
43484674 GAATACCCTTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCA
*
43484701 AAATACCCCTGTAGGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAATTACCA
*
43484728 AAATACCCCTGTAGGGTGGAATTAC
1 AAATACCCCTGTAGGGTAGAATTAC
43484753 AGAGATACCT
Statistics
Matches: 118, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 118 1.00
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCA
Found at i:43484761 original size:81 final size:81
Alignment explanation
Indices: 43484594--43484780 Score: 254
Period size: 81 Copynumber: 2.3 Consensus size: 81
43484584 AATTTATTGA
* * *
43484594 AATACCCATGTAAGGTAAAATTACCAAAATACCCCTGTAGGGTAGAATTTTCAAAATACCCCTGT
1 AATACCCTTGTAGGGTAAAATTACCAAAATACCCCTGTAGGGTAGAATTCTCAAAATACCCCTGT
*
43484659 AGGGTAGAATTACCGG
66 AGGGTAGAATTACAGG
* *
43484675 AATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACT-AAAATACCCCTG
1 AATACCCTTGTAGGGTAAAATTACCAAAATACCCCTGTAGGGTAGAATT-CTCAAAATACCCCTG
*
43484739 TAGGGTGGAATTACA-G
65 TAGGGTAGAATTACAGG
* *
43484755 AGATA-CCTTATGGGGTAAAATTACCA
1 A-ATACCCTTGTAGGGTAAAATTACCA
43484781 TTTTGCCCCT
Statistics
Matches: 93, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
80 19 0.20
81 73 0.78
82 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (81 bp):
AATACCCTTGTAGGGTAAAATTACCAAAATACCCCTGTAGGGTAGAATTCTCAAAATACCCCTGT
AGGGTAGAATTACAGG
Found at i:43485257 original size:22 final size:22
Alignment explanation
Indices: 43485205--43485269 Score: 87
Period size: 22 Copynumber: 3.0 Consensus size: 22
43485195 TTAAAGCCTT
*
43485205 CTGATTATGGCTCTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
43485227 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
43485249 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
43485270 ACGTATTTGC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 1 0.03
22 35 0.95
23 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:43485448 original size:25 final size:25
Alignment explanation
Indices: 43485401--43485475 Score: 71
Period size: 26 Copynumber: 2.8 Consensus size: 25
43485391 GCAGTTATCG
43485401 ATGGCTTTGTGCCACATATTCTGTT-AA
1 ATGGC-TT-TGCCACATA-TCTGTTCAA
*
43485428 ATGGCTTTGCCACATTATCTGTTCTA
1 ATGGCTTTGCCACA-TATCTGTTCAA
* *
43485454 GTGGCTCTGCCACAATATCTGT
1 ATGGCTTTGCCAC-ATATCTGT
43485476 ATCTGGTGAC
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
25 13 0.31
26 23 0.55
27 6 0.14
ACGTcount: A:0.20, C:0.23, G:0.19, T:0.39
Consensus pattern (25 bp):
ATGGCTTTGCCACATATCTGTTCAA
Found at i:43485465 original size:26 final size:27
Alignment explanation
Indices: 43485429--43485501 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 27
43485419 TTCTGTTAAA
* *
43485429 TGGCTTTGCCACATTATCTGT-TCTAG
1 TGGCTCTGCCACAATATCTGTATCTAG
*
43485455 TGGCTCTGCCACAATATCTGTATCTGG
1 TGGCTCTGCCACAATATCTGTATCTAG
* *
43485482 TGACTCTGTCACAATATCTG
1 TGGCTCTGCCACAATATCTG
43485502 ATAACTGAGC
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
26 19 0.46
27 22 0.54
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.37
Consensus pattern (27 bp):
TGGCTCTGCCACAATATCTGTATCTAG
Found at i:43485676 original size:6 final size:6
Alignment explanation
Indices: 43485661--43485757 Score: 74
Period size: 6 Copynumber: 15.8 Consensus size: 6
43485651 ATTCTGTGAC
* * *
43485661 CTGATA CTGATT CTGATT TTGATT CTG-TT ACCTGATA CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* * *
43485710 CTGATT CTG-TCAC CTAATT CTGATT TTGATT CTGATT CT-AGTT CTGAT
1 CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT CTGA-TT CTGAT
43485758 AATGTTTCTT
Statistics
Matches: 72, Mismatches: 11, Indels: 16
0.73 0.11 0.16
Matches are distributed among these distances:
5 4 0.06
6 60 0.83
7 6 0.08
8 2 0.03
ACGTcount: A:0.20, C:0.18, G:0.15, T:0.47
Consensus pattern (6 bp):
CTGATT
Found at i:43485733 original size:37 final size:31
Alignment explanation
Indices: 43485638--43485773 Score: 150
Period size: 31 Copynumber: 4.4 Consensus size: 31
43485628 TTGCATTCAC
* *
43485638 ATTCTGATTTTTGATTCTGTGACCTGATACTG
1 ATTCTGA-TTCTGATTCTGTTACCTGATACTG
*
43485670 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
* * *
43485701 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
* *
43485732 ATTTTGATTCTGATTCTAGTT--CTGATAATG
1 ATTCTGATTCTGATTCT-GTTACCTGATACTG
* *
43485762 TTTCTTATTCTG
1 ATTCTGATTCTG
43485774 TTATGGGTTA
Statistics
Matches: 90, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
30 15 0.17
31 66 0.73
32 9 0.10
ACGTcount: A:0.19, C:0.16, G:0.15, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTG
Found at i:43491035 original size:47 final size:48
Alignment explanation
Indices: 43490983--43491088 Score: 108
Period size: 54 Copynumber: 2.1 Consensus size: 48
43490973 TTGTTGTACC
**
43490983 ATGGC-AACAAGTGATAAGTGACATT-CGTATAAGACCATAGTTGGGCT
1 ATGGCAAACAAGTGATAAGTGA-ATTCCGTATAAGACCATAGCCGGGCT
*
43491030 ATGGCATCGAAAAACAAGTGATAAGTGATTTCCGTATAAGACCATAGCCGGGCT
1 ATGG---C---AAACAAGTGATAAGTGAATTCCGTATAAGACCATAGCCGGGCT
43491084 ATGGC
1 ATGGC
43491089 TTCAGATTAA
Statistics
Matches: 48, Mismatches: 3, Indels: 12
0.76 0.05 0.19
Matches are distributed among these distances:
47 4 0.08
50 1 0.02
51 1 0.02
53 2 0.04
54 40 0.83
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (48 bp):
ATGGCAAACAAGTGATAAGTGAATTCCGTATAAGACCATAGCCGGGCT
Found at i:43491157 original size:53 final size:52
Alignment explanation
Indices: 43491010--43491159 Score: 144
Period size: 53 Copynumber: 2.8 Consensus size: 52
43491000 GTGACATTCG
* * * *
43491010 TATAAGACCATAGTTGGGCTATGGCATCGAAAAACAAGTGAT-AAGTGATTTCCG
1 TATAAGACCATAGCTGGGCTATGGCATC--AAAA-AAGTGATAAACTGATATCCA
* * *
43491064 TATAAGACCATAGCCGGGCTATGGCTTCAGATTAAAGTGATACAACT-A-ATCCA
1 TATAAGACCATAGCTGGGCTATGGCATCA-A-AAAAGTGATA-AACTGATATCCA
43491117 TATAAGACCATAGCTGGGCTATGGCATCAAAGAAATGTGATAA
1 TATAAGACCATAGCTGGGCTATGGCATCAAA-AAA-GTGATAA
43491160 GTGTTTCCGT
Statistics
Matches: 80, Mismatches: 10, Indels: 14
0.77 0.10 0.13
Matches are distributed among these distances:
52 6 0.08
53 44 0.55
54 27 0.34
55 3 0.04
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.25
Consensus pattern (52 bp):
TATAAGACCATAGCTGGGCTATGGCATCAAAAAAGTGATAAACTGATATCCA
Found at i:43505115 original size:40 final size:40
Alignment explanation
Indices: 43504957--43505101 Score: 161
Period size: 40 Copynumber: 3.6 Consensus size: 40
43504947 TGAATGATGT
* * * *
43504957 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATAT
1 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGA-T-ACTATAA
* **
43504997 CCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTA-AA
1 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGATACTATAA
43505036 TCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGATACTATAA
1 -CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGATACTATAA
* *
43505077 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGCCCCGAAGGCATTTG
43505102 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
39 1 0.01
40 77 0.86
41 11 0.12
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGATACTATAA
Found at i:43505119 original size:80 final size:80
Alignment explanation
Indices: 43504956--43505120 Score: 185
Period size: 80 Copynumber: 2.1 Consensus size: 80
43504946 TTGAATGATG
* * *
43504956 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGCCCCGAAGGCTTTGTGCGAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
**
43505021 GTGCGAGATACTAAA
66 GAACGAGATACTAAA
* * *
43505036 TCCGGGCTAAGCCCCGAAGGCATTTGTGCG-AGAT-ACTATAACCGGGCTATG-TCCCGAAGGCA
1 TCCGGGCTAAGCCCCGAAGGC-TTTGTGCGAAG-TGACCATAACCGGACTAAGAT-CCGAAGGCA
*
43505098 TTTGAACGAG-TAGCTATA
63 TTTGAACGAGATA-CTAAA
43505116 TCCGG
1 TCCGG
43505121 TTAAATTCCG
Statistics
Matches: 72, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
79 3 0.04
80 61 0.85
81 8 0.11
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGCCCCGAAGGCTTTGTGCGAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGATACTAAA
Found at i:43509431 original size:53 final size:53
Alignment explanation
Indices: 43509354--43509560 Score: 206
Period size: 53 Copynumber: 3.9 Consensus size: 53
43509344 CCATGGCAAC
* *
43509354 AAGTGATAAGTGATATCCGTATAAGA-CATAGTTGGGCTATGGCATCGGAAAA
1 AAGTGATAAGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCATCGGAAAA
* * * **
43509406 CAAGTGATAAGTGATTTCCGTATAAGACCATAGCCGAGCTATGGCTTCGGATTA
1 -AAGTGATAAGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCATCGGAAAA
* * * *
43509460 AAGTGATACAAGTGA--TCTGTATAAGACCATAGCTGGGTTATGGCATCAGAGAA
1 AAGTGAT--AAGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCATCGGAAAA
* * * ***
43509513 ATGTGATAAGTG-TTTCCGTGTAAGACCATATCTGAAATATGGCATCGG
1 AAGTGATAAGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCATCGG
43509561 TATGATATAT
Statistics
Matches: 126, Mismatches: 23, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
51 5 0.04
52 27 0.21
53 68 0.54
54 20 0.16
55 6 0.05
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (53 bp):
AAGTGATAAGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCATCGGAAAA
Found at i:43515724 original size:55 final size:53
Alignment explanation
Indices: 43515648--43515853 Score: 224
Period size: 55 Copynumber: 3.8 Consensus size: 53
43515638 ATTAGGGTTT
* *
43515648 AAGGTTACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTTTAAGG
1 AAGGATACCATGTAAGACCATGCCAAGTCATGGCAA-TGGTAAGGTTTTTAAGG
* * *
43515702 CAAGGAAATCATGTAAGACCATGCCAAGTCATGGCAATTGGTAAGGTTACTATAAGG
1 -AAGGATACCATGTAAGACCATGCCAAGTCATGGCAA-TGGTAAGGTT--TTTAAGG
* *
43515759 TAAAGG-TCCCATGTAAGACCATGCCAAGACATGGCAATGGTAA-G-TTTTAA--
1 --AAGGATACCATGTAAGACCATGCCAAGTCATGGCAATGGTAAGGTTTTTAAGG
** *
43515809 AAGGATACCACATAAGACCATGACAAGTCATGGCAATGGTAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGTCATGGCAATGGTAAGGT
43515854 ACTCGCGTAT
Statistics
Matches: 129, Mismatches: 16, Indels: 16
0.80 0.10 0.10
Matches are distributed among these distances:
48 4 0.03
49 32 0.25
50 1 0.01
52 4 0.03
54 1 0.01
55 44 0.34
56 6 0.05
57 33 0.26
58 4 0.03
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.23
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGTCATGGCAATGGTAAGGTTTTTAAGG
Found at i:43519680 original size:40 final size:40
Alignment explanation
Indices: 43519625--43519705 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
43519615 CGTACTTGGA
*
43519625 TAAACTTGTAGTTGTGTTCATTGATGATATCTTGATTTAT
1 TAAACATGTAGTTGTGTTCATTGATGATATCTTGATTTAT
43519665 TAAACATGTAGTTGTGTTCATTGATGATATCTTGATTTAT
1 TAAACATGTAGTTGTGTTCATTGATGATATCTTGATTTAT
43519705 T
1 T
43519706 CTCATGATGA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.26, C:0.07, G:0.17, T:0.49
Consensus pattern (40 bp):
TAAACATGTAGTTGTGTTCATTGATGATATCTTGATTTAT
Found at i:43523303 original size:55 final size:53
Alignment explanation
Indices: 43523215--43523425 Score: 187
Period size: 55 Copynumber: 3.9 Consensus size: 53
43523205 CATTAGGGTT
* * *
43523215 TAAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGG
1 TAAGGAAATCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTTCTAAGG
* * * *
43523270 TGAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACT-A--
1 TAAGGAAATCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGG
* *
43523320 TAAGGCAAAGGTCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGG
1 TAAGG-AAA--T--CATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-TAAGG
* * * * * *
43523378 CAAGGATACCATGTAAGACCATGTCAAGACATGACAATGGTAAGTTTC
1 TAAGGAAATCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC
43523426 AAAAGGATAC
Statistics
Matches: 125, Mismatches: 21, Indels: 21
0.75 0.13 0.13
Matches are distributed among these distances:
50 4 0.03
51 3 0.02
52 1 0.01
53 36 0.29
54 12 0.10
55 62 0.50
56 1 0.01
57 2 0.02
58 4 0.03
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (53 bp):
TAAGGAAATCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGG
Found at i:43523422 original size:108 final size:110
Alignment explanation
Indices: 43523223--43523423 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
43523213 TTTAAGGATA
** *
43523223 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGTGAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
* *
43523288 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGACAATGATAAGTTACTATAAGGCAAAGGTC
* *
43523333 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
43523395 ACCATGTCAAGACATGACAATGGTAAGTT
65 ACCATGTCAAGACATGACAATGATAAGTT
43523424 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 45 0.55
109 7 0.09
110 27 0.33
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGACAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:43526900 original size:48 final size:48
Alignment explanation
Indices: 43526847--43527000 Score: 281
Period size: 48 Copynumber: 3.2 Consensus size: 48
43526837 TGGTCTATTC
*
43526847 TATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
1 TATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
*
43526895 TATACATATCTCATACATATTTCACACTAGCCATTCGGCGTTACCACA
1 TATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
*
43526943 TATACATATCTCATACATATTTCACACTAGCCATTCAGCTTTACCACA
1 TATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
43526991 TATACATATC
1 TATACATATC
43527001 ACACTAGCCA
Statistics
Matches: 102, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 102 1.00
ACGTcount: A:0.32, C:0.28, G:0.06, T:0.34
Consensus pattern (48 bp):
TATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
Found at i:43526957 original size:96 final size:96
Alignment explanation
Indices: 43526847--43527171 Score: 505
Period size: 96 Copynumber: 3.5 Consensus size: 96
43526837 TGGTCTATTC
*
43526847 TATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACA
1 TATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACA
*
43526912 TATTTCACACTAGCCATTCGGCGTTACCACA
66 TATTTCACACTAGCCATTCGGCTTTACCACA
*
43526943 TATACATATCTCATACATATTTCACACTAGCCATTCAGCTTTA-C-C----AC--A--T-ATACA
1 TATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACA
43526997 TA--TCACACTAGCCATTCGGCTTTACCACA
66 TATTTCACACTAGCCATTCGGCTTTACCACA
* *
43527026 TATACATATCTCATACATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTCATACA
1 TATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACA
*
43527091 TATTTCACATTAGCCATTCGGCTTTACCACA
66 TATTTCACACTAGCCATTCGGCTTTACCACA
43527122 TATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATA
1 TATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATA
43527172 CATATATATT
Statistics
Matches: 207, Mismatches: 9, Indels: 26
0.86 0.04 0.11
Matches are distributed among these distances:
83 66 0.32
84 1 0.00
85 8 0.04
86 1 0.00
88 1 0.00
89 2 0.01
90 2 0.01
91 1 0.00
93 1 0.00
94 8 0.04
95 1 0.00
96 115 0.56
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.34
Consensus pattern (96 bp):
TATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACA
TATTTCACACTAGCCATTCGGCTTTACCACA
Found at i:43527006 original size:35 final size:35
Alignment explanation
Indices: 43526955--43527035 Score: 135
Period size: 35 Copynumber: 2.3 Consensus size: 35
43526945 TACATATCTC
43526955 ATACATATTTCACACTAGCCATTCAGCTTTACCACAT
1 ATACATA--TCACACTAGCCATTCAGCTTTACCACAT
*
43526992 ATACATATCACACTAGCCATTCGGCTTTACCACAT
1 ATACATATCACACTAGCCATTCAGCTTTACCACAT
43527027 ATACATATC
1 ATACATATC
43527036 TCATACATAT
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
35 36 0.84
37 7 0.16
ACGTcount: A:0.33, C:0.30, G:0.06, T:0.31
Consensus pattern (35 bp):
ATACATATCACACTAGCCATTCAGCTTTACCACAT
Found at i:43527014 original size:83 final size:83
Alignment explanation
Indices: 43526907--43527083 Score: 300
Period size: 83 Copynumber: 2.1 Consensus size: 83
43526897 TACATATCTC
43526907 ATACATATTTCACACTAGCCATTCGGCGTTACCACATATACATATCTCATACATATTTCACACTA
1 ATACATA--TCACACTAGCCATTCGGCGTTACCACATATACATATCTCATACATATTTCACACTA
43526972 GCCATTCAGCTTTACCACAT
64 GCCATTCAGCTTTACCACAT
* * *
43526992 ATACATATCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCATTAGC
1 ATACATATCACACTAGCCATTCGGCGTTACCACATATACATATCTCATACATATTTCACACTAGC
*
43527057 CATTCGGCTTTACCACAT
66 CATTCAGCTTTACCACAT
43527075 ATACATATC
1 ATACATATC
43527084 TCATACATAT
Statistics
Matches: 88, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
83 81 0.92
85 7 0.08
ACGTcount: A:0.32, C:0.29, G:0.07, T:0.32
Consensus pattern (83 bp):
ATACATATCACACTAGCCATTCGGCGTTACCACATATACATATCTCATACATATTTCACACTAGC
CATTCAGCTTTACCACAT
Found at i:43527027 original size:131 final size:131
Alignment explanation
Indices: 43526859--43527131 Score: 474
Period size: 131 Copynumber: 2.1 Consensus size: 131
43526849 TACATATCTC
*
43526859 ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTA
1 ATACATA--TCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTA
43526924 GCCATTCGGCGTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCAGCTTTACCA
64 GCCATTCGGCGTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCAGCTTTACCA
43526989 CAT
129 CAT
* *
43526992 ATACATATCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCATTAGC
1 ATACATATCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGC
* * *
43527057 CATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
66 CATTCGGCGTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCAGCTTTACCACA
43527122 T
131 T
43527123 ATACATATC
1 ATACATATC
43527132 TCATACATAT
Statistics
Matches: 134, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
131 127 0.95
133 7 0.05
ACGTcount: A:0.32, C:0.28, G:0.07, T:0.33
Consensus pattern (131 bp):
ATACATATCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGC
CATTCGGCGTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCAGCTTTACCACA
T
Found at i:43527061 original size:48 final size:48
Alignment explanation
Indices: 43526992--43527171 Score: 319
Period size: 48 Copynumber: 3.8 Consensus size: 48
43526982 TTTACCACAT
*
43526992 ATACATA--TCACACTAGCCATTCGGCTTTACCACATATACATATCTC
1 ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC
*
43527038 ATACATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTC
1 ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC
43527086 ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC
1 ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC
*
43527134 ATACATATTTCACACTAGCCATTCGGCTTTACCACATA
1 ATACATATTTCACATTAGCCATTCGGCTTTACCACATA
43527172 CATATATATT
Statistics
Matches: 128, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
46 7 0.05
48 121 0.95
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.33
Consensus pattern (48 bp):
ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC
Found at i:43527147 original size:179 final size:179
Alignment explanation
Indices: 43526847--43527171 Score: 614
Period size: 179 Copynumber: 1.8 Consensus size: 179
43526837 TGGTCTATTC
43526847 TATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACA
1 TATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACA
43526912 TATTTCACACTAGCCATTCGGCGTTACCACATATACATATCTCATACATATTTCACACTAGCCAT
66 TATTTCACACTAGCCATTCGGCGTTACCACATATACATATCTCATACATATTTCACACTAGCCAT
43526977 TCAGCTTTACCACATATACATATCACACTAGCCATTCGGCTTTACCACA
131 TCAGCTTTACCACATATACATATCACACTAGCCATTCGGCTTTACCACA
*
43527026 TATACATATCTCATACATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTCATACA
1 TATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACA
* *
43527091 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCAT
66 TATTTCACACTAGCCATTCGGCGTTACCACATATACATATCTCATACATATTTCACACTAGCCAT
*
43527156 TCGGCTTTACCACATA
131 TCAGCTTTACCACATA
43527172 CATATATATT
Statistics
Matches: 142, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
179 142 1.00
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.34
Consensus pattern (179 bp):
TATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACA
TATTTCACACTAGCCATTCGGCGTTACCACATATACATATCTCATACATATTTCACACTAGCCAT
TCAGCTTTACCACATATACATATCACACTAGCCATTCGGCTTTACCACA
Found at i:43543994 original size:128 final size:128
Alignment explanation
Indices: 43543751--43543994 Score: 373
Period size: 127 Copynumber: 1.9 Consensus size: 128
43543741 TCTTTTTCTT
* *
43543751 TCTCCTCTCCACCCTTTTTTTCTCTCTTTTGACAACCACCACCACCATCCTTTTTTCTTTTCTCC
1 TCTCCTCTCCACCCTTCTTTTCTCTCTTTTGACAACCACCACCACCATCCATTTTTCTTTTCTCC
* * * *
43543816 ATCGTAAGCTTATTTGTACCACCACATCACCACCATCCACAACTAACTTTAACTTTCCTTTTC
66 ACCATAAGCTTATTTGCACCACCACATCACCACCATCCACAACCAACTTTAACTTTCCTTTTC
* *
43543879 TCTCCTCTCCACCCTTCTTTTCTCTCTTTTGACAACCACTACCACCA-CCATTTTTCTTTTCTCT
1 TCTCCTCTCCACCCTTCTTTTCTCTCTTTTGACAACCACCACCACCATCCATTTTTCTTTTCTCC
* * *
43543943 GCCATAAGCTTATTTGCACCACTATATCACCACCATCCACAACCAACCTTTA
66 ACCATAAGCTTATTTGCACCACCACATCACCACCATCCACAACCAA-CTTTA
43543995 CTTCTATTTT
Statistics
Matches: 104, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
127 54 0.52
128 50 0.48
ACGTcount: A:0.21, C:0.38, G:0.03, T:0.37
Consensus pattern (128 bp):
TCTCCTCTCCACCCTTCTTTTCTCTCTTTTGACAACCACCACCACCATCCATTTTTCTTTTCTCC
ACCATAAGCTTATTTGCACCACCACATCACCACCATCCACAACCAACTTTAACTTTCCTTTTC
Found at i:43549770 original size:28 final size:29
Alignment explanation
Indices: 43549730--43549852 Score: 162
Period size: 29 Copynumber: 4.3 Consensus size: 29
43549720 AAAGCATGAC
43549730 TATGAATGTGA-TTGGGCCTAATGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
* *
43549758 TATGAATCTGATTTGGCCCTAATGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
43549787 -ATTGAATGTGATTTGGGCCTAATGGGCCA
1 TA-TGAATGTGATTTGGGCCTAATGGGCCA
** *
43549816 TATGAATAAGA-TTGGGCCTAGTGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
*
43549844 TATGCATGT
1 TATGAATGT
43549853 ATGTAGACTT
Statistics
Matches: 82, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
28 33 0.40
29 48 0.59
30 1 0.01
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.30
Consensus pattern (29 bp):
TATGAATGTGATTTGGGCCTAATGGGCCA
Found at i:43552468 original size:4 final size:4
Alignment explanation
Indices: 43552459--43552489 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
43552449 AGGTTTGTAT
43552459 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
43552490 TAGTATATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:43553595 original size:29 final size:29
Alignment explanation
Indices: 43553517--43553639 Score: 133
Period size: 29 Copynumber: 4.3 Consensus size: 29
43553507 AAAGTATGAC
*
43553517 TATGAGTGTGA-TTGGGCCTAATGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
* ** *
43553545 TATGAATATGATTTATGCCTAATAGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
* * *
43553574 AATGAATGTGATTTGGGTCTAATGGGTCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
* *
43553603 TATGAATGAGA-TTGGGCCTAGTGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
*
43553631 TATGCATGT
1 TATGAATGT
43553640 ATGAAGACTT
Statistics
Matches: 75, Mismatches: 19, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
28 30 0.40
29 45 0.60
ACGTcount: A:0.27, C:0.12, G:0.29, T:0.32
Consensus pattern (29 bp):
TATGAATGTGATTTGGGCCTAATGGGCCA
Found at i:43561210 original size:32 final size:32
Alignment explanation
Indices: 43561164--43561225 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
43561154 AAGTCTTACT
43561164 TGATCCATGCTCTTTTTTAACTATATCACTCC
1 TGATCCATGCTCTTTTTTAACTATATCACTCC
*
43561196 TGATTCATGCTCTTTTTTAACTATATCACT
1 TGATCCATGCTCTTTTTTAACTATATCACT
43561226 GAAAAATGAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.23, C:0.24, G:0.06, T:0.47
Consensus pattern (32 bp):
TGATCCATGCTCTTTTTTAACTATATCACTCC
Found at i:43561362 original size:23 final size:23
Alignment explanation
Indices: 43561331--43561377 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
43561321 AATCAGAGTA
43561331 CAAGCTTCAGCATATTGTCCTTT
1 CAAGCTTCAGCATATTGTCCTTT
* * *
43561354 CAAGTTTCAGCGTATTGTTCTTT
1 CAAGCTTCAGCATATTGTCCTTT
43561377 C
1 C
43561378 CAGACCTAGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.19, C:0.23, G:0.15, T:0.43
Consensus pattern (23 bp):
CAAGCTTCAGCATATTGTCCTTT
Found at i:43565512 original size:5 final size:5
Alignment explanation
Indices: 43565497--43565537 Score: 64
Period size: 5 Copynumber: 8.0 Consensus size: 5
43565487 GGGTTTTTAA
*
43565497 TTTTCC TTTTC TTTTC GTTTC TTTTC TTTTC TTTTC TTTTC
1 TTTT-C TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC
43565538 GCTTTTTCCG
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
5 29 0.88
6 4 0.12
ACGTcount: A:0.00, C:0.22, G:0.02, T:0.76
Consensus pattern (5 bp):
TTTTC
Found at i:43566200 original size:11 final size:12
Alignment explanation
Indices: 43566143--43566210 Score: 61
Period size: 12 Copynumber: 5.6 Consensus size: 12
43566133 ACTTTATAGT
43566143 TTTTTATTTGAA
1 TTTTTATTTGAA
43566155 TTTTTA--TGAA
1 TTTTTATTTGAA
*
43566165 CTTTTATATTTTTTAA
1 -TTTT-TA--TTTGAA
*
43566181 TTTTAATTTG-A
1 TTTTTATTTGAA
43566192 TTTTTATTTGAA
1 TTTTTATTTGAA
43566204 TTTTTAT
1 TTTTTAT
43566211 AATTTTTGAA
Statistics
Matches: 45, Mismatches: 4, Indels: 14
0.71 0.06 0.22
Matches are distributed among these distances:
10 4 0.09
11 14 0.31
12 19 0.42
14 1 0.02
15 4 0.09
16 3 0.07
ACGTcount: A:0.25, C:0.01, G:0.06, T:0.68
Consensus pattern (12 bp):
TTTTTATTTGAA
Found at i:43566897 original size:31 final size:31
Alignment explanation
Indices: 43566856--43566920 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
43566846 TTCCTGCATT
43566856 AAATCCAACCAAAAACAACAAATATAACATA
1 AAATCCAACCAAAAACAACAAATATAACATA
* * * * *
43566887 AAATCTAACCAAAAATAGCAAATGTAGCATA
1 AAATCCAACCAAAAACAACAAATATAACATA
43566918 AAA
1 AAA
43566921 AATACAACAA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.62, C:0.18, G:0.05, T:0.15
Consensus pattern (31 bp):
AAATCCAACCAAAAACAACAAATATAACATA
Found at i:43567173 original size:21 final size:21
Alignment explanation
Indices: 43567148--43567187 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
43567138 TTTGCTACCA
* *
43567148 TCGCTACTGCCTCTGCCTCTT
1 TCGCTACAGCCGCTGCCTCTT
*
43567169 TCGCTGCAGCCGCTGCCTC
1 TCGCTACAGCCGCTGCCTC
43567188 CCTCGCTGCT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.05, C:0.45, G:0.20, T:0.30
Consensus pattern (21 bp):
TCGCTACAGCCGCTGCCTCTT
Found at i:43567636 original size:13 final size:14
Alignment explanation
Indices: 43567610--43567641 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
43567600 ACTAACGACG
43567610 AATTAAACCATTAT
1 AATTAAACCATTAT
43567624 AATTAAA-CATTAT
1 AATTAAACCATTAT
43567637 AATTA
1 AATTA
43567642 TTTATAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 11 0.61
14 7 0.39
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:43570130 original size:18 final size:19
Alignment explanation
Indices: 43570091--43570133 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 19
43570081 AGTGAGTAAG
*
43570091 TATGATAATTGAATATATT
1 TATGATAATAGAATATATT
43570110 TATGA-AATAGAATATGA-T
1 TATGATAATAGAATAT-ATT
43570128 TATGAT
1 TATGAT
43570134 TATTGAGTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 15 0.71
19 6 0.29
ACGTcount: A:0.44, C:0.00, G:0.14, T:0.42
Consensus pattern (19 bp):
TATGATAATAGAATATATT
Found at i:43570905 original size:19 final size:19
Alignment explanation
Indices: 43570860--43570906 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
43570850 TAAATATTAA
*
43570860 AATAAAAATAAAAATATAG
1 AATAAAAATAAAAATAAAG
* *
43570879 AATCAAAACT-AAAATAAAT
1 AAT-AAAAATAAAAATAAAG
43570898 AATAAAAAT
1 AATAAAAAT
43570907 TAGATTAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 5 0.22
19 13 0.57
20 5 0.22
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.21
Consensus pattern (19 bp):
AATAAAAATAAAAATAAAG
Found at i:43571387 original size:23 final size:22
Alignment explanation
Indices: 43571330--43571581 Score: 66
Period size: 23 Copynumber: 11.0 Consensus size: 22
43571320 ATCTCTTTTT
*
43571330 CAGCAACTAAACACTCCAATTTG
1 CAGCAACTAAACACT-CAATTTC
* *
43571353 CGGCGA-TAAAACATCTCAATTTC
1 CAGCAACT-AAACA-CTCAATTTC
*
43571376 CAGCAACTAAACACTTCAATTTG
1 CAGCAACTAAACAC-TCAATTTC
* *
43571399 CAG-TACTTAAAACACTTCAATTTA
1 CAGCAAC-T-AAACAC-TCAATTTC
* ** * *
43571423 CAACATTTAAGCACTTCAATTTA
1 CAGCAACTAAACAC-TCAATTTC
** * *
43571446 CAGCATTTAAACACTTCAACTTG
1 CAGCAACTAAACAC-TCAATTTC
* * **
43571469 CAGC-ACTTTAACATATCAATTAA
1 CAGCAAC-TAAACA-CTCAATTTC
* ** * *
43571492 CAACATTTATACAACTCAA-TTA
1 CAGCAACTAAAC-ACTCAATTTC
*
43571514 CAACAA-TAAAACATCTCAATTTC
1 CAGCAACT-AAACA-CTCAATTTC
*
43571537 CAGCAACTAAACACTTCAATTTG
1 CAGCAACTAAACAC-TCAATTTC
*
43571560 CAG-TACTTAAACACTTCAATTT
1 CAGCAAC-TAAACAC-TCAATTT
43571582 ACAACATTTA
Statistics
Matches: 175, Mismatches: 37, Indels: 34
0.71 0.15 0.14
Matches are distributed among these distances:
21 2 0.01
22 22 0.13
23 129 0.74
24 22 0.13
ACGTcount: A:0.40, C:0.25, G:0.06, T:0.29
Consensus pattern (22 bp):
CAGCAACTAAACACTCAATTTC
Found at i:43571531 original size:22 final size:23
Alignment explanation
Indices: 43571478--43571534 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 23
43571468 GCAGCACTTT
* * *
43571478 AACATATCAATTAACAACATTTA
1 AACATCTCAATTAACAACAATAA
* *
43571501 TACAACTCAATT-ACAACAATAA
1 AACATCTCAATTAACAACAATAA
43571523 AACATCTCAATT
1 AACATCTCAATT
43571535 TCCAGCAACT
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
22 18 0.67
23 9 0.33
ACGTcount: A:0.51, C:0.21, G:0.00, T:0.28
Consensus pattern (23 bp):
AACATCTCAATTAACAACAATAA
Found at i:43571541 original size:91 final size:92
Alignment explanation
Indices: 43571412--43571641 Score: 263
Period size: 91 Copynumber: 2.5 Consensus size: 92
43571402 TACTTAAAAC
* * *
43571412 ACTTCAATTTACAACATTTAAGCACTTCAATTTACAGCATTTAAACACTTCAACTTGCAGCACTT
1 ACTTCAATTTACAACAATAAAACACTTCAATTTACAGCATTTAAACACTTCAACTTGCAGCACTT
*
43571477 TAACA-TATCAATTAACAACATTTATACA-
66 AAACACT-TCAATTAACAACATTTA-A-AT
* ** * *
43571505 AC-TCAA-TTACAACAATAAAACA-TCTCAATTTCCAGCAACTAAACACTTCAATTTGCAGTACT
1 ACTTCAATTTACAACAATAAAACACT-TCAATTTACAGCATTTAAACACTTCAACTTGCAGCACT
*
43571567 TAAACACTTCAATTTACAACATTTAAAT
65 TAAACACTTCAATTAACAACATTTAAAT
* * * *
43571595 ACTTCAATTTACAACATTTAAACACTTCAATTTGCAACATTTAAACA
1 ACTTCAATTTACAACAATAAAACACTTCAATTTACAGCATTTAAACA
43571642 TCAGCAGCCA
Statistics
Matches: 115, Mismatches: 16, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
89 1 0.01
90 4 0.03
91 71 0.62
92 36 0.31
93 3 0.03
ACGTcount: A:0.42, C:0.23, G:0.03, T:0.32
Consensus pattern (92 bp):
ACTTCAATTTACAACAATAAAACACTTCAATTTACAGCATTTAAACACTTCAACTTGCAGCACTT
AAACACTTCAATTAACAACATTTAAAT
Found at i:43571592 original size:23 final size:23
Alignment explanation
Indices: 43571383--43571641 Score: 233
Period size: 23 Copynumber: 11.3 Consensus size: 23
43571373 TTCCAGCAAC
*
43571383 TAAACACTTCAATTTGCAGTAC-TT
1 TAAACACTTCAATTTACA--ACATT
*
43571407 AAAACACTTCAATTTACAACATT
1 TAAACACTTCAATTTACAACATT
* *
43571430 TAAGCACTTCAATTTACAGCATT
1 TAAACACTTCAATTTACAACATT
* * *
43571453 TAAACACTTCAACTTGCAGCACTT
1 TAAACACTTCAATTTACAACA-TT
*
43571477 T-AACA-TATCAATTAACAACATT
1 TAAACACT-TCAATTTACAACATT
* *
43571499 TATACAAC-TCAA-TTACAACAAT
1 TAAAC-ACTTCAATTTACAACATT
* * * **
43571521 AAAACA-TCTCAATTTCCAGCAAC
1 TAAACACT-TCAATTTACAACATT
* ** *
43571544 TAAACACTTCAATTTGCAGTACT
1 TAAACACTTCAATTTACAACATT
43571567 TAAACACTTCAATTTACAACATT
1 TAAACACTTCAATTTACAACATT
*
43571590 TAAATACTTCAATTTACAACATT
1 TAAACACTTCAATTTACAACATT
*
43571613 TAAACACTTCAATTTGCAACATT
1 TAAACACTTCAATTTACAACATT
43571636 TAAACA
1 TAAACA
43571642 TCAGCAGCCA
Statistics
Matches: 193, Mismatches: 32, Indels: 21
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.01
22 21 0.11
23 150 0.78
24 21 0.11
ACGTcount: A:0.42, C:0.22, G:0.04, T:0.32
Consensus pattern (23 bp):
TAAACACTTCAATTTACAACATT
Found at i:43575287 original size:28 final size:27
Alignment explanation
Indices: 43575246--43575304 Score: 100
Period size: 28 Copynumber: 2.1 Consensus size: 27
43575236 TTTAGTTTCA
*
43575246 TTTTGTTGGAAAATATTTATTTTGATT
1 TTTTGTTGGAAAATATTTATTTTAATT
43575273 TTTTAGTTGGAAAATATTTATTTTAATT
1 TTTT-GTTGGAAAATATTTATTTTAATT
43575301 TTTT
1 TTTT
43575305 TAGTATTTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 4 0.13
28 26 0.87
ACGTcount: A:0.27, C:0.00, G:0.12, T:0.61
Consensus pattern (27 bp):
TTTTGTTGGAAAATATTTATTTTAATT
Found at i:43576220 original size:21 final size:21
Alignment explanation
Indices: 43576190--43576247 Score: 55
Period size: 21 Copynumber: 2.8 Consensus size: 21
43576180 TTCATTTTTA
*
43576190 AAAATAATTAAAATTAAAATT
1 AAAATTATTAAAATTAAAATT
* *
43576211 AAAATTATTAATTATGAAAATT
1 AAAATTATTAA-AATTAAAATT
* *
43576233 -GAGTTATTAAAATTA
1 AAAATTATTAAAATTA
43576248 TTATTTGAAC
Statistics
Matches: 29, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
20 3 0.10
21 18 0.62
22 8 0.28
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (21 bp):
AAAATTATTAAAATTAAAATT
Found at i:43576270 original size:33 final size:31
Alignment explanation
Indices: 43576207--43576276 Score: 79
Period size: 30 Copynumber: 2.2 Consensus size: 31
43576197 TTAAAATTAA
**
43576207 AATTAAAATTATTAATTATGAAAATTGAGTT
1 AATTAAAATTATTAATTAACAAAATTGAGTT
*
43576238 -ATTAAAATTATTATTTGAACAAATATTAGAGTT
1 AATTAAAATTATTAATT-AACAAA-ATT-GAGTT
43576271 AATTAA
1 AATTAA
43576277 TACTAAAATA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
30 15 0.47
31 4 0.12
32 3 0.09
33 5 0.16
34 5 0.16
ACGTcount: A:0.49, C:0.01, G:0.09, T:0.41
Consensus pattern (31 bp):
AATTAAAATTATTAATTAACAAAATTGAGTT
Found at i:43576961 original size:25 final size:24
Alignment explanation
Indices: 43576914--43576962 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 24
43576904 TTTATGAAAG
43576914 AAAAAAACAATGCTTATACTAATA
1 AAAAAAACAATGCTTATACTAATA
*
43576938 AAAAAATAGCAATGTTTATA-TAATA
1 AAAAAA-A-CAATGCTTATACTAATA
43576963 GTTTACGTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 6 0.27
25 6 0.27
26 10 0.45
ACGTcount: A:0.57, C:0.08, G:0.06, T:0.29
Consensus pattern (24 bp):
AAAAAAACAATGCTTATACTAATA
Found at i:43579461 original size:11 final size:11
Alignment explanation
Indices: 43579447--43579491 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
43579437 AGATAAATAT
43579447 TATTTTATTAA
1 TATTTTATTAA
*
43579458 TATTTTAATAAGA
1 TATTTT-ATTA-A
*
43579471 TATTTTATTAT
1 TATTTTATTAA
43579482 TATTTTATTA
1 TATTTTATTA
43579492 GTATATAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 16 0.55
12 6 0.21
13 7 0.24
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:43581305 original size:46 final size:45
Alignment explanation
Indices: 43581253--43581567 Score: 411
Period size: 46 Copynumber: 6.8 Consensus size: 45
43581243 GCTCTTTGAA
*
43581253 ATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATA-GTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
43581299 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACTTGAC
1 ATGAAAT-AGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
43581345 ATGAAA-AGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATAG--TAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * * *
43581391 GGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAGCGTGAC
1 ATGAAAT-AGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
43581437 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAAT-AGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
43581483 ATGAAA-AGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATAG--TAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
43581529 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 ATG-AAAT-AGTAAGACCATGGTTGAAAGATACCATGGCA
43581568 TAATGTGACA
Statistics
Matches: 241, Mismatches: 18, Indels: 20
0.86 0.06 0.07
Matches are distributed among these distances:
44 2 0.01
45 1 0.00
46 235 0.98
48 3 0.01
ACGTcount: A:0.42, C:0.15, G:0.23, T:0.20
Consensus pattern (45 bp):
ATGAAATAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:43581410 original size:92 final size:92
Alignment explanation
Indices: 43581263--43581567 Score: 468
Period size: 92 Copynumber: 3.3 Consensus size: 92
43581253 ATGAAATATG
* **
43581263 TAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGA
*
43581328 TACCATGGCAACTTGACATGAAAAGAA
66 TACCATGGCAACATGACATGAAAAGAA
**
43581355 TAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAATGAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGA
* * *
43581420 TACCATGGCAGCGTGACATGAAATGAA
66 TACCATGGCAACATGACATGAAAAGAA
*
43581447 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAAGAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGA
*
43581512 TACCATGGCAACATGACA-GAAAATGAG
66 TACCATGGCAACATGACATGAAAA-GAA
* * *
43581539 TAAGACCATAGTTGAAAGACACTATGGCA
1 TAAGACCATGGTTGAAAGATACCATGGCA
43581568 TAATGTGACA
Statistics
Matches: 194, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
91 4 0.02
92 190 0.98
ACGTcount: A:0.42, C:0.15, G:0.24, T:0.19
Consensus pattern (92 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGA
TACCATGGCAACATGACATGAAAAGAA
Found at i:43581503 original size:138 final size:138
Alignment explanation
Indices: 43581263--43581567 Score: 502
Period size: 138 Copynumber: 2.2 Consensus size: 138
43581253 ATGAAATATG
* **
43581263 TAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGA
* *
43581328 TACCATGGCAACTTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACGG
66 TACCATGGCAACATGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAG
*
43581393 GAAATGAA
131 AAAATGAA
* *
43581401 TAAGACCATGGTTGAAAGATACCATGGCAGCGTGACATGAAATGAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGA
43581466 TACCATGGCAACATGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAG
66 TACCATGGCAACATGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAG
*
43581531 AAAATGAG
131 AAAATGAA
* * *
43581539 TAAGACCATAGTTGAAAGACACTATGGCA
1 TAAGACCATGGTTGAAAGATACCATGGCA
43581568 TAATGTGACA
Statistics
Matches: 155, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
138 155 1.00
ACGTcount: A:0.42, C:0.15, G:0.24, T:0.19
Consensus pattern (138 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGA
TACCATGGCAACATGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAG
AAAATGAA
Found at i:43584010 original size:47 final size:47
Alignment explanation
Indices: 43583959--43584134 Score: 237
Period size: 47 Copynumber: 3.7 Consensus size: 47
43583949 TTAGGATTCT
* * *
43583959 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
43584006 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
43584053 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
43584100 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
43584135 TCCCGAAGGG
Statistics
Matches: 115, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
46 1 0.01
47 114 0.99
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Done.