Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 141 of 356
Found at i:45445835 original size:47 final size:45
Alignment explanation
Indices: 45445726--45445850 Score: 128
Period size: 45 Copynumber: 2.6 Consensus size: 45
45445716 CCATGAACAC
*
45445726 TAAGCTCTATTGAGCTGAAACGGTAAGCT-CTATCAAGGTGAATAG
1 TAAGCTCTA-TGAGCTGAAACGGTAAGCTCCAATCAAGGTGAATAG
* * *
45445771 TAACCTCATATGAGCTGAAACGGTAAGCTCCAAT-GAGTTGAAAATAG
1 TAAGCTC-TATGAGCTGAAACGGTAAGCTCCAATCAAGGTG--AATAG
45445818 TAAGCTCTTATGAGCTGATATATCGGTAAGCTC
1 TAAGCTC-TATGAGCTGA-A-A-CGGTAAGCTC
45445851 ATACGAGCTG
Statistics
Matches: 67, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
45 29 0.43
46 5 0.07
47 21 0.31
48 1 0.01
49 1 0.01
50 10 0.15
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (45 bp):
TAAGCTCTATGAGCTGAAACGGTAAGCTCCAATCAAGGTGAATAG
Found at i:45448636 original size:18 final size:18
Alignment explanation
Indices: 45448613--45448858 Score: 106
Period size: 18 Copynumber: 13.3 Consensus size: 18
45448603 GAATAATTAT
45448613 TTATTCAGTAACAATCAA
1 TTATTCAGTAACAATCAA
* * * *
45448631 TTATTCAATAATAACCAG
1 TTATTCAGTAACAATCAA
* *
45448649 TTATTCAGTATCGATCAA
1 TTATTCAGTAACAATCAA
*
45448667 TTGATCGGTTATCCAGTAACAGTCAA
1 TT-A-----T-T-CAGTAACAATCAA
*
45448693 TTATTCAAT-A-AATCAGA
1 TTATTCAGTAACAATCA-A
* * *
45448710 -TATTTAGTAACTATTAA
1 TTATTCAGTAACAATCAA
* *
45448727 GTTATTCAGTAGCAGTC-A
1 -TTATTCAGTAACAATCAA
* * *
45448745 TTCATTCAGTGACAATTAG
1 TT-ATTCAGTAACAATCAA
**
45448764 TTATTCAGTAATGATCAA
1 TTATTCAGTAACAATCAA
* * *
45448782 TTATTCAGTAATATTCAG
1 TTATTCAGTAACAATCAA
* *
45448800 TTATTTAGTAACAGTCTAA
1 TTATTCAGTAACAATC-AA
* *
45448819 -TATCCAGTAACAGTCAA
1 TTATTCAGTAACAATCAA
* *
45448836 TTATTCAGTAATAATCAG
1 TTATTCAGTAACAATCAA
45448854 TTATT
1 TTATT
45448859 TTATACCTTT
Statistics
Matches: 164, Mismatches: 47, Indels: 34
0.67 0.19 0.14
Matches are distributed among these distances:
16 10 0.06
17 8 0.05
18 115 0.70
19 15 0.09
20 1 0.01
24 1 0.01
25 2 0.01
26 12 0.07
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.37
Consensus pattern (18 bp):
TTATTCAGTAACAATCAA
Found at i:45449103 original size:45 final size:45
Alignment explanation
Indices: 45449032--45449175 Score: 207
Period size: 45 Copynumber: 3.2 Consensus size: 45
45449022 AATAGCAACA
* * * *
45449032 GTAACAGTAACAGTATTCAACTCACACAGTGCCGAATCGATAACG
1 GTAACAGTAACAATATTCGACACACACAGTGCCGAATCGGTAACG
*
45449077 GTAACAGTAACAATATTCGACACACACAGTGTCGAATCGGTAACG
1 GTAACAGTAACAATATTCGACACACACAGTGCCGAATCGGTAACG
* * *
45449122 GTAACAGTAACAATATTTGACACACAAAGTGCCGAATCGGTAACA
1 GTAACAGTAACAATATTCGACACACACAGTGCCGAATCGGTAACG
*
45449167 GTAGCAGTA
1 GTAACAGTA
45449176 GCGTTAACAG
Statistics
Matches: 89, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 89 1.00
ACGTcount: A:0.39, C:0.22, G:0.19, T:0.20
Consensus pattern (45 bp):
GTAACAGTAACAATATTCGACACACACAGTGCCGAATCGGTAACG
Found at i:45449595 original size:5 final size:5
Alignment explanation
Indices: 45449584--45449630 Score: 67
Period size: 5 Copynumber: 9.2 Consensus size: 5
45449574 AATTAATCAT
* *
45449584 AATTC CATTC CATTC AATTC AATTC AATTC AATTC AATTC AAATTC A
1 AATTC AATTC AATTC AATTC AATTC AATTC AATTC AATTC -AATTC A
45449631 CTTTTCCACT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
5 34 0.87
6 5 0.13
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.38
Consensus pattern (5 bp):
AATTC
Found at i:45450943 original size:4 final size:4
Alignment explanation
Indices: 45450934--45450964 Score: 53
Period size: 4 Copynumber: 7.5 Consensus size: 4
45450924 CCTTTTCTCC
45450934 CTTT CTTT CTTT CTTT CTTT CCTTT CTTT CT
1 CTTT CTTT CTTT CTTT CTTT -CTTT CTTT CT
45450965 CCCTTGTTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 22 0.85
5 4 0.15
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (4 bp):
CTTT
Found at i:45451104 original size:22 final size:23
Alignment explanation
Indices: 45451055--45451107 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
45451045 AACTATTATA
* * *
45451055 ATATTTATTATTTAGACATGTGT
1 ATATTTATTATATACACATGTAT
45451078 ATATTTATTA-ATACACATGTAT
1 ATATTTATTATATACACATGTAT
*
45451100 TTATTTAT
1 ATATTTAT
45451108 CACCTTACAC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
22 16 0.62
23 10 0.38
ACGTcount: A:0.34, C:0.06, G:0.08, T:0.53
Consensus pattern (23 bp):
ATATTTATTATATACACATGTAT
Found at i:45465389 original size:27 final size:29
Alignment explanation
Indices: 45465339--45465394 Score: 71
Period size: 27 Copynumber: 2.0 Consensus size: 29
45465329 ATTCAACTTC
* *
45465339 TCTTTGAGCTTTTCTTTTTCAAGATTTTT
1 TCTTTGAGCTTTTCTTTTACAAGAGTTTT
*
45465368 TCTTT-AG-TTTTCTTTTAGAAGAGTTTT
1 TCTTTGAGCTTTTCTTTTACAAGAGTTTT
45465395 AACAATCTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 17 0.71
28 2 0.08
29 5 0.21
ACGTcount: A:0.16, C:0.11, G:0.12, T:0.61
Consensus pattern (29 bp):
TCTTTGAGCTTTTCTTTTACAAGAGTTTT
Found at i:45465834 original size:27 final size:28
Alignment explanation
Indices: 45465804--45465856 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
45465794 AAAAATTGTT
*
45465804 AAAACTCTTCTAAAAG-AAAACTCAAGA
1 AAAACTCTTCAAAAAGAAAAACTCAAGA
* *
45465831 AAAATTCTTGAAAAAGAAAAACTCAA
1 AAAACTCTTCAAAAAGAAAAACTCAA
45465857 AGAGAAGTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 13 0.59
28 9 0.41
ACGTcount: A:0.58, C:0.15, G:0.08, T:0.19
Consensus pattern (28 bp):
AAAACTCTTCAAAAAGAAAAACTCAAGA
Found at i:45481734 original size:12 final size:12
Alignment explanation
Indices: 45481717--45481747 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
45481707 TTTTTTTCCC
45481717 TTCTTCTCCGTT
1 TTCTTCTCCGTT
45481729 TTCTTCTCCGTT
1 TTCTTCTCCGTT
45481741 TTCTTCT
1 TTCTTCT
45481748 TTTTCGATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.00, C:0.32, G:0.06, T:0.61
Consensus pattern (12 bp):
TTCTTCTCCGTT
Found at i:45482259 original size:18 final size:18
Alignment explanation
Indices: 45482229--45482274 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
45482219 AAATTTGGGC
45482229 CGTGTGA-CCCACACAGG
1 CGTGTGAGCCCACACAGG
* *
45482246 CGTGTGGGCCCACACGGG
1 CGTGTGAGCCCACACAGG
45482264 CGTGTGAGCCC
1 CGTGTGAGCCC
45482275 TTTTAATCTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
17 6 0.24
18 19 0.76
ACGTcount: A:0.15, C:0.35, G:0.37, T:0.13
Consensus pattern (18 bp):
CGTGTGAGCCCACACAGG
Found at i:45485125 original size:17 final size:17
Alignment explanation
Indices: 45485103--45485136 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
45485093 ATAGGAAAAA
45485103 TAATCTTAA-AAGATTTG
1 TAATC-TAATAAGATTTG
45485120 TAATCTAATAAGATTTG
1 TAATCTAATAAGATTTG
45485137 ATTTTATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.19
17 13 0.81
ACGTcount: A:0.41, C:0.06, G:0.12, T:0.41
Consensus pattern (17 bp):
TAATCTAATAAGATTTG
Found at i:45486487 original size:19 final size:19
Alignment explanation
Indices: 45486451--45486486 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
45486441 TAATTTTTAA
*
45486451 TTTATTTATTATCTAAAAG
1 TTTATTTATTACCTAAAAG
45486470 TTTATTTATT-CCTAAAA
1 TTTATTTATTACCTAAAA
45486487 ATTAACATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.36, C:0.08, G:0.03, T:0.53
Consensus pattern (19 bp):
TTTATTTATTACCTAAAAG
Found at i:45487269 original size:48 final size:48
Alignment explanation
Indices: 45487127--45487261 Score: 225
Period size: 48 Copynumber: 2.8 Consensus size: 48
45487117 AAAAGATGCT
* *
45487127 AATATGTTGTGGATGAACCATTGGTTGTGTAGATAAACTGCCGACTAA
1 AATATGTTGTGGATGAACCATTGGTCGTGCAGATAAACTGCCGACTAA
* *
45487175 AATATGTTGTGGATGAACCACTGGTCATGCAGATAAACTGCCGACTAA
1 AATATGTTGTGGATGAACCATTGGTCGTGCAGATAAACTGCCGACTAA
*
45487223 AATATGTTGTGGATGAACCATTAGTCGTGCAGATAAACT
1 AATATGTTGTGGATGAACCATTGGTCGTGCAGATAAACT
45487262 ATCGACTACT
Statistics
Matches: 80, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 80 1.00
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.29
Consensus pattern (48 bp):
AATATGTTGTGGATGAACCATTGGTCGTGCAGATAAACTGCCGACTAA
Found at i:45487343 original size:33 final size:34
Alignment explanation
Indices: 45487313--45487422 Score: 123
Period size: 34 Copynumber: 3.3 Consensus size: 34
45487303 TGCAACATAA
45487313 TTATAACAAATCAATACGGTAGCAA-TAACATGC
1 TTATAACAAATCAATACGGTAGCAATTAACATGC
* ** * *
45487346 TTATAACAAGTTGATACTGTAGCAATTATCATGC
1 TTATAACAAATCAATACGGTAGCAATTAACATGC
* * * *
45487380 TTATAATAGATCAATACGGTAGCAGTAAACATGC
1 TTATAACAAATCAATACGGTAGCAATTAACATGC
*
45487414 TTATGACAA
1 TTATAACAA
45487423 GTGTTCAATT
Statistics
Matches: 59, Mismatches: 17, Indels: 1
0.77 0.22 0.01
Matches are distributed among these distances:
33 21 0.36
34 38 0.64
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.29
Consensus pattern (34 bp):
TTATAACAAATCAATACGGTAGCAATTAACATGC
Found at i:45489810 original size:54 final size:55
Alignment explanation
Indices: 45489674--45489817 Score: 186
Period size: 54 Copynumber: 2.6 Consensus size: 55
45489664 AATGAAATAA
* ** *
45489674 TAAAATTTAAAATCATAAAAAACTAATTAAC-TTAAAAAAACCTTTTTTATAATATT
1 TAAAATTTAAAATCATAAAAAACTAATTAACTTTAAAAAAA-C-GTTCAAAAATATT
*
45489730 TAAAATTTAAAATCATAAAAATCTAATTAACTTTAAAAAAA-GTTCAAAAAT-TT
1 TAAAATTTAAAATCATAAAAAACTAATTAACTTTAAAAAAACGTTCAAAAATATT
*
45489783 TCAAATTTTAAAATCATAAAAAACTAATTAACTTT
1 T-AAAATTTAAAATCATAAAAAACTAATTAACTTT
45489818 TAATAATTTT
Statistics
Matches: 79, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
53 3 0.04
54 37 0.47
56 30 0.38
57 9 0.11
ACGTcount: A:0.54, C:0.09, G:0.01, T:0.36
Consensus pattern (55 bp):
TAAAATTTAAAATCATAAAAAACTAATTAACTTTAAAAAAACGTTCAAAAATATT
Found at i:45506389 original size:12 final size:12
Alignment explanation
Indices: 45506372--45506425 Score: 56
Period size: 12 Copynumber: 4.3 Consensus size: 12
45506362 ACTATTTTAA
45506372 TAAATTTAATAT
1 TAAATTTAATAT
*
45506384 TAAATTTAATAA
1 TAAATTTAATAT
*
45506396 AATAATTATCAATAT
1 TA-AATT-T-AATAT
45506411 T-AATTTAATAT
1 TAAATTTAATAT
45506422 TAAA
1 TAAA
45506426 GTGATTAGGT
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
11 6 0.18
12 15 0.44
13 8 0.24
14 1 0.03
15 4 0.12
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (12 bp):
TAAATTTAATAT
Found at i:45506401 original size:20 final size:19
Alignment explanation
Indices: 45506354--45506401 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
45506344 AACTATTCCA
*
45506354 AAAATAATACTATTTTAAT
1 AAAATAATACTAATTTAAT
* *
45506373 AAATTTAATATTAAATTTAAT
1 AAA-ATAATACT-AATTTAAT
45506394 AAAATAAT
1 AAAATAAT
45506402 TATCAATATT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 3 0.13
20 10 0.43
21 10 0.43
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (19 bp):
AAAATAATACTAATTTAAT
Found at i:45508672 original size:25 final size:26
Alignment explanation
Indices: 45508618--45508677 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
45508608 TACCCCTAGC
*
45508618 AAAATTTTGACTATTTTGTCCTTGAT
1 AAAATTTTGACAATTTTGTCCTTGAT
* *
45508644 AAAATTTTGACAATTTT-TTCTTGGT
1 AAAATTTTGACAATTTTGTCCTTGAT
45508669 AAAATTTTG
1 AAAATTTTG
45508678 GGAAAAATGT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
25 15 0.48
26 16 0.52
ACGTcount: A:0.30, C:0.08, G:0.12, T:0.50
Consensus pattern (26 bp):
AAAATTTTGACAATTTTGTCCTTGAT
Found at i:45515320 original size:46 final size:46
Alignment explanation
Indices: 45515188--45515405 Score: 144
Period size: 46 Copynumber: 4.7 Consensus size: 46
45515178 ATATCTGTGT
*
45515188 CGATGCCATGCCCCAGACATGGTCTTACACTAGCAC-C-TCTCATTGC
1 CGATG-CATGCCCCAGACAT-GTCTTACACTAGCACTCGTCTCATGGC
* * *
45515234 CGATGCATGTCCCAGACATGTCTTACATTGGCTTA-T-GTCTCGA-GGC
1 CGATGCATGCCCCAGACATGTCTTACACTAGC--ACTCGTCTC-ATGGC
* *
45515280 CGATGCATGCCCCAAACATGTCTTACACTAGCACTCGTCTCAAT-AC
1 CGATGCATGCCCCAGACATGTCTTACACTAGCACTCGTCTC-ATGGC
* * * * * * * *
45515326 TGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAAT-GTGGC
1 CGATG-CATGCCCCAGACAT-GTCTTACACTAGCACTCGT-CTCATGGC
* * * *
45515374 TGATTCATGTCCTAGACATGTCTTACACTAGC
1 CGATGCATGCCCCAGACATGTCTTACACTAGC
45515406 TTACAATAAC
Statistics
Matches: 138, Mismatches: 22, Indels: 24
0.75 0.12 0.13
Matches are distributed among these distances:
44 12 0.09
45 14 0.10
46 63 0.46
47 27 0.20
48 21 0.15
49 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (46 bp):
CGATGCATGCCCCAGACATGTCTTACACTAGCACTCGTCTCATGGC
Found at i:45515393 original size:94 final size:90
Alignment explanation
Indices: 45515188--45515405 Score: 233
Period size: 94 Copynumber: 2.4 Consensus size: 90
45515178 ATATCTGTGT
* *
45515188 CGATGCCATGCCCCAGACATGGTCTTACACTAGCACCTCTCATTGCCGATGCATGTCCCAGACAT
1 CGATG-CATGCCCCAGACAT-GTCTTACACTAGCACCTCTCAATACCGATGCATGTCCCAGACAT
* **
45515253 GTCTTACATTGGCTTATGTCTCGAGGC
64 GTCTTACACTGGCTTATGAATCGAGGC
* * *
45515280 CGATGCATGCCCCAAACATGTCTTACACTAGCACTCGTCTCAATACTGATGCCATGTCCTAGACA
1 CGATGCATGCCCCAGACATGTCTTACACTAGCAC-C-TCTCAATACCGATG-CATGTCCCAGACA
*
45515345 TGGTCTTACACTGGCTCTCAT-AAT-GTGGC
63 T-GTCTTACACTGGCT-T-ATGAATCGAGGC
* * * *
45515374 TGATTCATGTCCTAGACATGTCTTACACTAGC
1 CGATGCATGCCCCAGACATGTCTTACACTAGC
45515406 TTACAATAAC
Statistics
Matches: 106, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
90 15 0.14
91 14 0.13
92 16 0.15
93 13 0.12
94 44 0.42
95 2 0.02
96 2 0.02
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (90 bp):
CGATGCATGCCCCAGACATGTCTTACACTAGCACCTCTCAATACCGATGCATGTCCCAGACATGT
CTTACACTGGCTTATGAATCGAGGC
Found at i:45519354 original size:46 final size:44
Alignment explanation
Indices: 45519224--45519384 Score: 119
Period size: 46 Copynumber: 3.5 Consensus size: 44
45519214 TGTGTGAGCT
* * * * *
45519224 AGTGTAAGACATGTCTGGGACATGGCATCGGCATTGAGACG-AGTAC
1 AGTGTAAGACATGTCTAGGACAT-ACATCGACCTCGAGA-GAAG-AC
* * * *
45519270 TAGTGTAAGACATGTCTGGGACATGCTTCGACCTCGAGATGTAAGCC
1 -AGTGTAAGACATGTCTAGGACATACATCGACCTCGAGA-G-AAGAC
* *
45519317 AGTGTAAGACATGTCTAGGACATACATCG-GCTACGAGAGATGAC
1 AGTGTAAGACATGTCTAGGACATACATCGACCT-CGAGAGAAGAC
* *
45519361 AGGGTAAGACCATGTCTAGCACAT
1 AGTGTAAGA-CATGTCTAGGACAT
45519385 GGCACCGACA
Statistics
Matches: 96, Mismatches: 14, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
44 11 0.11
45 16 0.17
46 43 0.45
47 24 0.25
48 2 0.02
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.22
Consensus pattern (44 bp):
AGTGTAAGACATGTCTAGGACATACATCGACCTCGAGAGAAGAC
Found at i:45528593 original size:119 final size:120
Alignment explanation
Indices: 45528387--45528609 Score: 274
Period size: 119 Copynumber: 1.9 Consensus size: 120
45528377 TACTCGTTCA
*
45528387 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGAAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGAAT
* * *
45528452 TTAGTAACTCGCACAAATGCCTTCTGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * * ** *
45528507 AATGCCTTTGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGA
* * *
45528569 ATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
64 ATATAGTAAC-TAGCACAAATGCCTTCGGGACTTAACCCGGA
45528610 CATCATTCGA
Statistics
Matches: 87, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
118 4 0.05
119 64 0.74
120 19 0.22
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGAAT
ATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:45528609 original size:40 final size:40
Alignment explanation
Indices: 45528366--45528609 Score: 264
Period size: 40 Copynumber: 6.1 Consensus size: 40
45528356 CGGAATTTAA
** *
45528366 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
45528406 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * * *
45528446 CCGAATTTAGTAACTCGCACAAATGCCTTCTGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
45528486 CCGGATTTAGTAACTCGCACCAATGCCTTTGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
45528525 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
45528565 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
45528605 CCGGA
1 CCGGA
45528610 CATCATTCGA
Statistics
Matches: 173, Mismatches: 24, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
38 2 0.01
39 31 0.18
40 128 0.74
41 12 0.07
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:45536308 original size:40 final size:40
Alignment explanation
Indices: 45536271--45536495 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
45536261 GCTACTCGTT
* *
45536271 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
45536311 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
45536351 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
45536391 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * * *
45536430 CAAATGCCTTC-GGATCTTAGTCCGAATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
45536471 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
45536496 CATCATTCGA
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
38 2 0.01
39 32 0.20
40 116 0.71
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:45536479 original size:119 final size:120
Alignment explanation
Indices: 45536273--45536495 Score: 292
Period size: 119 Copynumber: 1.9 Consensus size: 120
45536263 TACTCGTTCA
* *
45536273 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGAAT
* *
45536338 TTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
45536393 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGA
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGA
* * *
45536455 ATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
64 ATATAGTAAC-TAGCACAAATGCCTTCGGGACTTAACCCGGA
45536496 CATCATTCGA
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 4 0.04
119 65 0.73
120 20 0.22
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGAAT
ATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:45541188 original size:16 final size:16
Alignment explanation
Indices: 45541167--45541217 Score: 93
Period size: 16 Copynumber: 3.2 Consensus size: 16
45541157 CTTTGCCAAA
*
45541167 GATTGAAGATCTATTT
1 GATTGATGATCTATTT
45541183 GATTGATGATCTATTT
1 GATTGATGATCTATTT
45541199 GATTGATGATCTATTT
1 GATTGATGATCTATTT
45541215 GAT
1 GAT
45541218 CAATTCAAGG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.27, C:0.06, G:0.20, T:0.47
Consensus pattern (16 bp):
GATTGATGATCTATTT
Found at i:45548880 original size:90 final size:90
Alignment explanation
Indices: 45548786--45548954 Score: 203
Period size: 90 Copynumber: 1.9 Consensus size: 90
45548776 GGTAAGTGAT
* * * ** * * *
45548786 TTCATATAAGCCCATGTCTGGGACATGGCATCAATATGAGGTCCCGTATAAGACCATGTCTGGGA
1 TTCATATAAGACCATATCTAGGACATGAAATCAATATGAGATCCCATATAAGACCATGTCTAGGA
45548851 CATGGCATTGGCACTGATTTGAGAC
66 CATGGCATTGGCACTGATTTGAGAC
* * * * * *
45548876 TTCATATAAGACCATATCTAGGATATGAAATCGATGTGTGATCCCATGTAAGACCATGTTTAGGA
1 TTCATATAAGACCATATCTAGGACATGAAATCAATATGAGATCCCATATAAGACCATGTCTAGGA
*
45548941 CATGGCTTTGGCAC
66 CATGGCATTGGCAC
45548955 CCTATTTGGT
Statistics
Matches: 64, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
90 64 1.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (90 bp):
TTCATATAAGACCATATCTAGGACATGAAATCAATATGAGATCCCATATAAGACCATGTCTAGGA
CATGGCATTGGCACTGATTTGAGAC
Found at i:45552693 original size:49 final size:47
Alignment explanation
Indices: 45552633--45553335 Score: 747
Period size: 47 Copynumber: 14.3 Consensus size: 47
45552623 ATACATGATA
* *
45552633 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
45552682 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* *
45552729 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
*
45552778 ATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
45552827 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* *
45552874 ATATATGTGATAAGGCCTAATAGCTGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
45552923 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
45552970 ATATATGTGATAAGGCCTAATGGCCGATGTGACGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* ** *
45553017 ATATATGTGATAAGGCCATTCATAT-G-TGATACG-GCCGAATG-GCCAA-TGT
1 ATATATGTGATAAGGCC--T-A-ATGGCCGAT--GTGATGAATGTG-AAAGTGT
** * * * *
45553066 GATGA-ATGTGA-AAGTGTATATATATG-TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 -AT-ATATGTGATAAG-GCCTA-AT-GGCCGAT---G--TGAT-G--AATGTGA---------AA
45553128 GTGTAT
44 GTG--T
45553134 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
45553181 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
45553228 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* * * * * * *
45553275 ATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
45553322 ATAAATGTGATAAG
1 ATATATGTGATAAG
45553336 TCCCGAAGGG
Statistics
Matches: 571, Mismatches: 44, Indels: 80
0.82 0.06 0.12
Matches are distributed among these distances:
47 300 0.53
48 1 0.00
49 202 0.35
50 22 0.04
51 4 0.01
54 1 0.00
56 3 0.01
57 1 0.00
58 6 0.01
60 1 0.00
61 3 0.01
63 1 0.00
65 3 0.01
66 8 0.01
67 11 0.02
68 4 0.01
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
Found at i:45552796 original size:96 final size:95
Alignment explanation
Indices: 45552628--45553033 Score: 663
Period size: 96 Copynumber: 4.2 Consensus size: 95
45552618 AGTGTATACA
45552628 TGATAATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGAT
1 TGAT-ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGAT
45552693 AAGGCCTAATGGCCGATGTGATGAATGTGAAAG
63 AAGGCCTAATGGCCGATGTGATGAATGTGAAAG
45552726 TG-TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATA
1 TGATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATA
*
45552790 AGGCCTAATGGTCGATGTGATGAATGTGAAAG
64 AGGCCTAATGGCCGATGTGATGAATGTGAAAG
* *
45552822 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 TG-ATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAA
* *
45552887 GGCCTAATAGCTGATGTGATGAATGTGAAAG
65 GGCCTAATGGCCGATGTGATGAATGTGAAAG
* *
45552918 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 TG-ATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
45552983 GGCCTAATGGCCGATGTGACGAATGTGAAAG
65 GGCCTAATGGCCGATGTGATGAATGTGAAAG
45553014 TG-TATATATGTGATAAGGCC
1 TGATATATATGTGATAAGGCC
45553034 ATTCATATGT
Statistics
Matches: 297, Mismatches: 9, Indels: 8
0.95 0.03 0.03
Matches are distributed among these distances:
94 18 0.06
96 231 0.78
97 1 0.00
98 47 0.16
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (95 bp):
TGATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
GCCTAATGGCCGATGTGATGAATGTGAAAG
Found at i:45552825 original size:145 final size:145
Alignment explanation
Indices: 45552633--45553033 Score: 716
Period size: 145 Copynumber: 2.8 Consensus size: 145
45552623 ATACATGATA
* *
45552633 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
*
45552698 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
66 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATAGCCAATGTGATG
45552763 AATGTGAAAGTGTAT
131 AATGTGAAAGTGTAT
*
45552778 ATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
* **
45552843 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCTGATGTGATG
66 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATAGCCAATGTGATG
45552908 AATGTGAAAGTGTAT
131 AATGTGAAAGTGTAT
45552923 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
*
45552986 CTAATGGCCGATGTGACGAATGTGAAAGTGTATATATGTGATAAGGCC
66 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
45553034 ATTCATATGT
Statistics
Matches: 247, Mismatches: 9, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
143 64 0.26
145 183 0.74
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (145 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATAGCCAATGTGATG
AATGTGAAAGTGTAT
Found at i:45553059 original size:66 final size:67
Alignment explanation
Indices: 45552972--45553101 Score: 208
Period size: 66 Copynumber: 1.9 Consensus size: 67
45552962 GAAAGTGTAT
* *
45552972 ATATGTGATAAGGCCTAATGGCCGATGTGACGAATGTGAAAGTG-TATATATGTGATAAGGCCAT
1 ATATGTGATAAGGCCGAATGGCCAATGTGACGAATGTGAAAGTGATATATATGTGATAAGGCCAT
45553036 TC
66 TC
* *
45553038 ATATGTGATACGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 ATATGTGATAAGGCCGAATGGCCAATGTGACGAATGTGAAAGTG-ATATATATGTGATAAGGCC
45553102 TAATGGCCGA
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
66 40 0.69
68 18 0.31
ACGTcount: A:0.32, C:0.12, G:0.28, T:0.28
Consensus pattern (67 bp):
ATATGTGATAAGGCCGAATGGCCAATGTGACGAATGTGAAAGTGATATATATGTGATAAGGCCAT
TC
Found at i:45553068 original size:162 final size:163
Alignment explanation
Indices: 45552876--45553197 Score: 574
Period size: 162 Copynumber: 2.0 Consensus size: 163
45552866 GAAAGTGTAT
* **
45552876 ATATGTGATAAGGCCTAATAGCTGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
1 ATATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
45552941 AATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGACGA
66 AATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGACGA
45553005 ATGTGAAAGTGTATATATGTGATAAGGCCATTC
131 ATGTGAAAGTGTATATATGTGATAAGGCCATTC
* *
45553038 ATATGTGATACGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
1 ATATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
*
45553103 AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
66 AATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGACG
45553168 AATGTGAAAGTGTATATATGTGATAAGGCC
130 AATGTGAAAGTGTATATATGTGATAAGGCC
45553198 TAATAGCCGA
Statistics
Matches: 152, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
162 88 0.58
164 64 0.42
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.30
Consensus pattern (163 bp):
ATATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
AATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGACGA
ATGTGAAAGTGTATATATGTGATAAGGCCATTC
Found at i:45553092 original size:307 final size:305
Alignment explanation
Indices: 45552731--45553335 Score: 1075
Period size: 307 Copynumber: 2.0 Consensus size: 305
45552721 GAAAGTGTAT
45552731 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
1 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
*
45552796 AATGGTCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
66 AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
45552861 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCTGATGTGATGAATGTGAAAGTGTATATA
131 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATA
* *
45552926 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
194 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAAT
* * *
45552991 GGCCGATGTGACGAATGTGAAAGTGTATATATGTGATAAGGCCATTC
259 GGCCAACGTGACGAATGTGAAAGTGTATAAATGTGATAAGGCCATTC
*
45553038 ATATGTGATACGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
1 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
45553103 AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
66 AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
45553168 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
131 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
* * *
45553233 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGG
196 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGG
* *
45553298 CCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
261 CCAACGTGACGAATGTGAAAGTGTATAAATGTGATAAG
45553336 TCCCGAAGGG
Statistics
Matches: 285, Mismatches: 13, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
305 99 0.35
307 186 0.65
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (305 bp):
ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGG
CCAACGTGACGAATGTGAAAGTGTATAAATGTGATAAGGCCATTC
Found at i:45553128 original size:115 final size:114
Alignment explanation
Indices: 45552925--45553150 Score: 382
Period size: 115 Copynumber: 2.0 Consensus size: 114
45552915 AAGTGTATAT
* *
45552925 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
1 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
45552990 TGGCCGATGTGACGAATGTGAAAGTG-TATATATGTGATAAGGCCATTC
66 TGGCCGATGTGACGAATGTGAAAGTGATATATATGTGATAAGGCCATTC
*
45553038 ATATGTGATACGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
1 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCT
*
45553103 AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
64 AATGGCCGATGTGACGAATGTGAAAGTG-ATATATATGTGATAAGGCC
45553151 TAATGGCCGA
Statistics
Matches: 105, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
113 41 0.39
115 46 0.44
117 18 0.17
ACGTcount: A:0.32, C:0.10, G:0.28, T:0.29
Consensus pattern (114 bp):
ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
TGGCCGATGTGACGAATGTGAAAGTGATATATATGTGATAAGGCCATTC
Found at i:45553191 original size:211 final size:209
Alignment explanation
Indices: 45552829--45553244 Score: 742
Period size: 211 Copynumber: 2.0 Consensus size: 209
45552819 AAGTGTATAT
* *
45552829 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
1 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
*
45552894 TAGCTGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
66 TAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
45552959 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGACGAATGTGAAAGTGTATATATG
131 TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGACGAATGTGAAAGTGTATATATG
45553024 TGATAAGGCCATTC
196 TGATAAGGCCATTC
*
45553038 ATATGTGATACGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
1 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCT
*
45553103 AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
64 AATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
45553168 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
129 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGACGAATGTGAAAGTGTATATA
*
45553233 TGTGATGAGGCC
194 TGTGATAAGGCC
45553245 TAATGGCCGA
Statistics
Matches: 197, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
209 41 0.21
211 156 0.79
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (209 bp):
ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
TAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGACGAATGTGAAAGTGTATATATG
TGATAAGGCCATTC
Found at i:45555875 original size:40 final size:40
Alignment explanation
Indices: 45555556--45555863 Score: 415
Period size: 40 Copynumber: 7.7 Consensus size: 40
45555546 AGGTCTCGAC
45555556 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
45555595 GATGTACCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
45555635 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
45555675 GATGTATCCGGACTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
45555715 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * * *
45555755 AATATATCCGTGCTAA-ACCTCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCC-CGAAGAGCATTCGTGCTAGT
* * * * * *
45555795 AATATATCCGTGCTAA-ACCTCGAAGAGCATTTGTGCTGGT
1 GATGTATCCGGGCTAAGTCC-CGAAGAGCATTCGTGCTAGT
* * *
45555835 GTTATATCCGGGCTAGGTCCCGAAGAGCA
1 GATGTATCCGGGCTAAGTCCCGAAGAGCA
45555864 ATCATGCTGG
Statistics
Matches: 245, Mismatches: 21, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
39 5 0.02
40 238 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:45559207 original size:47 final size:47
Alignment explanation
Indices: 45559156--45559711 Score: 702
Period size: 47 Copynumber: 11.3 Consensus size: 47
45559146 ATACATGATA
* *
45559156 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
45559205 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* * *
45559252 ATATATGTGATAAGGCCGAATGGCCAATGTGAAATGTAAATATGTGATAAG-GC
1 ATATATGTGATAAGGCCTAATGGCCGATGTG--ATG---A-ATGTGA-AAGTGT
45559305 ATGGATGATGTGAAATATATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTAT
1 AT--AT-ATGTG-----------ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
45559367 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
45559414 ATATATGTGATAAGGCCTAATGGCCGATGTGACGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
45559461 ATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
45559510 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
45559557 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
45559604 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* * * * * * *
45559651 ATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
45559698 ATAAATGTGATAAG
1 ATATATGTGATAAG
45559712 TCCCGAAGGG
Statistics
Matches: 454, Mismatches: 26, Indels: 56
0.85 0.05 0.10
Matches are distributed among these distances:
47 263 0.58
48 12 0.03
49 117 0.26
52 1 0.00
53 9 0.02
54 3 0.01
55 2 0.00
56 5 0.01
59 8 0.02
60 9 0.02
61 1 0.00
62 2 0.00
64 3 0.01
66 8 0.02
67 11 0.02
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
Found at i:45559268 original size:96 final size:96
Alignment explanation
Indices: 45559156--45559711 Score: 748
Period size: 96 Copynumber: 5.7 Consensus size: 96
45559146 ATACATGATA
45559156 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
45559221 CTAATGGCCGATGTGATGAATGTGAAAGTGT
66 CTAATGGCCGATGTGATGAATGTGAAAGTGT
* *
45559252 ATATATGTGATAAGGCCGAATGGCCAATGTGAAATGTAAATATGTGATAAGGCATGGATGATGTG
1 ATATATGTGATAAGGCCGAATGGCCAATGTG--ATG---A-ATGTGA-AA-G--TGTAT-ATAT-
45559317 AAATATATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTAT
54 A------TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
* *
45559367 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
*
45559430 CTAATGGCCGATGTGACGAATGTGAAAGTGT
66 CTAATGGCCGATGTGATGAATGTGAAAGTGT
*
45559461 ATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
45559526 CTAATGGCCGATGTGATGAATGTGAAAGTGT
66 CTAATGGCCGATGTGATGAATGTGAAAGTGT
* * * *
45559557 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATGAGGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
45559620 CTAATGGCCGATGTGATGAATGTGAAAGTGT
66 CTAATGGCCGATGTGATGAATGTGAAAGTGT
* * * * *
45559651 ATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
45559712 TCCCGAAGGG
Statistics
Matches: 415, Mismatches: 20, Indels: 52
0.85 0.04 0.11
Matches are distributed among these distances:
94 140 0.34
95 17 0.04
96 147 0.35
98 3 0.01
101 2 0.00
102 9 0.02
103 3 0.01
104 1 0.00
105 2 0.00
106 4 0.01
107 4 0.01
108 3 0.01
109 6 0.01
110 1 0.00
113 27 0.07
114 16 0.04
115 30 0.07
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (96 bp):
ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
CTAATGGCCGATGTGATGAATGTGAAAGTGT
Found at i:45559500 original size:143 final size:143
Alignment explanation
Indices: 45559319--45559711 Score: 657
Period size: 143 Copynumber: 2.8 Consensus size: 143
45559309 ATGATGTGAA
45559319 ATATATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
*
45559383 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGACG
66 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGACG
45559448 AATGTGAAAGTGT
131 AATGTGAAAGTGT
*
45559461 ATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
*
45559526 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
66 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGACG
45559591 AATGTGAAAGTGT
131 AATGTGAAAGTGT
* * *
45559604 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
* * * * * *
45559667 CGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
45559712 TCCCGAAGGG
Statistics
Matches: 237, Mismatches: 13, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
141 54 0.23
142 20 0.08
143 163 0.69
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (143 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGACG
AATGTGAAAGTGT
Found at i:45563285 original size:28 final size:28
Alignment explanation
Indices: 45563253--45563311 Score: 109
Period size: 28 Copynumber: 2.1 Consensus size: 28
45563243 GTAATGATAC
45563253 ATATAATTCCAATCAATAATATCTCAAA
1 ATATAATTCCAATCAATAATATCTCAAA
*
45563281 ATATAATTCCTATCAATAATATCTCAAA
1 ATATAATTCCAATCAATAATATCTCAAA
45563309 ATA
1 ATA
45563312 AACCATAAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.49, C:0.17, G:0.00, T:0.34
Consensus pattern (28 bp):
ATATAATTCCAATCAATAATATCTCAAA
Found at i:45564475 original size:398 final size:385
Alignment explanation
Indices: 45563749--45564531 Score: 1187
Period size: 398 Copynumber: 2.0 Consensus size: 385
45563739 GAGCTTTTTC
* *
45563749 TGTAACACCCCGAACCCGAGACCGTCACCGGAGTCGAACACAAGGTGTTAACAGACTTTAGAAAA
1 TGTAACACCCCGAACCCGAGACCGACACCGGAGTCGAACACAAGGTGTTAACAGACTTTAAAAAA
45563814 TTTTCCAAACACTGCCAATCTGCGTAATAGTCGCTTTAAAAATCATATCTTGAGTTCAAAAACTC
66 TTTTCCAAACACTGCCAATCTGCGTAATAGTCGCTTTAAAAATCATATCTTGAGTTCAAAAACTC
**
45563879 GGAATCCAGTTCCGTAAATTTTTCCTGAAACTAGACTCATATGCCCATCTACATGTTTTTTCTAG
131 AAAATCCAGTTCCGTAAATTTTTCCTGAAACTAGACTCATATGCCCATCTACATGTTTTTTCTAG
* *
45563944 AATTTTTGGTCGGGCCAATTAGTACATTTTATTAGTCAAAGTCTCCCATGTTACAGGGATTGACT
196 AATTTTTGGTCGGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCATGTTACAGGGATCGACT
*
45564009 ACACTGACCTTTGCGCATTACGACTTGGATATCTCCCTGTACAGGGCTTCAATACTGATGCCGTT
261 ACACTGACCTTTGCGCATTACGACTTGGATATCTCCCTGTACAGGGCTCCAATACTGATGCCGTT
*
45564074 TGTTTCTATAGAAACTAGACTCAAAGAGGAATCTATACATATATGGCT-TGACTCATAATT
326 TGTTTCTATAGAAACTAGACTCAAAGAGAAATCTATACATATATGG-TATGACTCATAATT
*
45564134 TGTAACACCCCGAACCCGAGACCGACACCGGAGTCGAACACGAGGTGTTAACAGACTTTAAACCC
1 TGTAACACCCCGAACCCGAGACCGACACCGGAGTCGAACACAAGGTGTTAACAGAC--T------
* *
45564199 CTTATAAAAATATTTCTCAGACACTGCCAATCTGCGTACTAGTCGCTTTAAAAATCATATCTTGA
58 -TTA-AAAAAT-TTTC-CAAACACTGCCAATCTGCGTAATAGTCGCTTTAAAAATCATATCTTGA
* * * *
45564264 GTTTC-ACAACTCAAAAAT-CAGTTTCGT-GATTTTTCCCTGAAACTAGACTCATATTCCCATCT
119 G-TTCAAAAACTC-AAAATCCAGTTCCGTAAATTTTT-CCTGAAACTAGACTCATATGCCCATCT
*
45564326 ACATATTTTTTTCTAGAATTTTTGGTCGGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCAT
181 ACAT-GTTTTTTCTAGAATTTTTGGTCGGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCAT
* *
45564391 GTTACAGGGATCGACTACCCTGACCTTTGCGCATTACGACTTGGATATCTCCTTGTACAGGGCTC
245 GTTACAGGGATCGACTACACTGACCTTTGCGCATTACGACTTGGATATCTCCCTGTACAGGGCTC
* * *
45564456 CAATACTGATGCTGTTTGTTTCTATAGAAACTAGACTCAGAGAGAAATCTATCCATATATGGTAT
310 CAATACTGATGCCGTTTGTTTCTATAGAAACTAGACTCAAAGAGAAATCTATACATATATGGTAT
*
45564521 GACTCCTAATT
375 GACTCATAATT
45564532 ATCTCTGGTT
Statistics
Matches: 359, Mismatches: 22, Indels: 21
0.89 0.05 0.05
Matches are distributed among these distances:
385 54 0.15
387 1 0.00
394 3 0.01
395 5 0.01
396 10 0.03
397 92 0.26
398 194 0.54
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (385 bp):
TGTAACACCCCGAACCCGAGACCGACACCGGAGTCGAACACAAGGTGTTAACAGACTTTAAAAAA
TTTTCCAAACACTGCCAATCTGCGTAATAGTCGCTTTAAAAATCATATCTTGAGTTCAAAAACTC
AAAATCCAGTTCCGTAAATTTTTCCTGAAACTAGACTCATATGCCCATCTACATGTTTTTTCTAG
AATTTTTGGTCGGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCATGTTACAGGGATCGACT
ACACTGACCTTTGCGCATTACGACTTGGATATCTCCCTGTACAGGGCTCCAATACTGATGCCGTT
TGTTTCTATAGAAACTAGACTCAAAGAGAAATCTATACATATATGGTATGACTCATAATT
Found at i:45565531 original size:40 final size:40
Alignment explanation
Indices: 45565487--45565790 Score: 422
Period size: 40 Copynumber: 7.7 Consensus size: 40
45565477 GCTCCTCGTT
* *
45565487 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
45565527 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
45565567 CAAATGCATTCTGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
45565607 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
45565647 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
45565687 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
45565726 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGTAAC-TCGCA
45565767 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
45565791 CAGCATTCAA
Statistics
Matches: 242, Mismatches: 16, Indels: 13
0.89 0.06 0.05
Matches are distributed among these distances:
38 2 0.01
39 50 0.21
40 181 0.75
41 9 0.04
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:45566887 original size:14 final size:14
Alignment explanation
Indices: 45566868--45566894 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
45566858 AGGATGAGCA
45566868 TTTTTTTTTCTTTG
1 TTTTTTTTTCTTTG
45566882 TTTTTTTTTCTTT
1 TTTTTTTTTCTTT
45566895 CTAGTTTCGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.07, G:0.04, T:0.89
Consensus pattern (14 bp):
TTTTTTTTTCTTTG
Found at i:45567328 original size:21 final size:22
Alignment explanation
Indices: 45567286--45567329 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
45567276 CTGTTTTTTA
*
45567286 TTATTCATAATTTTATTAATAT
1 TTATTCATAATTTTATCAATAT
* *
45567308 TTATTTATAA-TTTATCCATAT
1 TTATTCATAATTTTATCAATAT
45567329 T
1 T
45567330 GTTTCAATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (22 bp):
TTATTCATAATTTTATCAATAT
Found at i:45567602 original size:20 final size:20
Alignment explanation
Indices: 45567523--45567605 Score: 59
Period size: 20 Copynumber: 4.2 Consensus size: 20
45567513 TTTAGCCCTA
45567523 TATTTTA-TATATATATATAT
1 TATTTTACTATATATAT-TAT
* *
45567543 GTTTTTTACCT-TATTTATTA-
1 -TATTTTA-CTATATATATTAT
* **
45567563 TATTGTAC-AT-TATAAAAT
1 TATTTTACTATATATATTAT
45567581 TATTTTACTATATATATTAT
1 TATTTTACTATATATATTAT
45567601 TATTT
1 TATTT
45567606 ATTATATCTT
Statistics
Matches: 46, Mismatches: 10, Indels: 13
0.67 0.14 0.19
Matches are distributed among these distances:
17 4 0.09
18 9 0.20
19 7 0.15
20 11 0.24
21 8 0.17
22 6 0.13
23 1 0.02
ACGTcount: A:0.34, C:0.05, G:0.02, T:0.59
Consensus pattern (20 bp):
TATTTTACTATATATATTAT
Found at i:45567651 original size:13 final size:13
Alignment explanation
Indices: 45567633--45567665 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
45567623 ACAAATTATT
45567633 ATTATTATTTTAC
1 ATTATTATTTTAC
*
45567646 ATTATTATTTTAT
1 ATTATTATTTTAC
45567659 ATTATTA
1 ATTATTA
45567666 ATATATCTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (13 bp):
ATTATTATTTTAC
Found at i:45568326 original size:29 final size:29
Alignment explanation
Indices: 45568284--45568340 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
45568274 GTAGTACTCT
* *
45568284 TTTTTGTATGTCATGCATTATTTTATTAC
1 TTTTTGTATATCATGCATTATTTAATTAC
45568313 TTTTTGTATATCATGCATTATTTAATTA
1 TTTTTGTATATCATGCATTATTTAATTA
45568341 TAACTTTGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.25, C:0.09, G:0.09, T:0.58
Consensus pattern (29 bp):
TTTTTGTATATCATGCATTATTTAATTAC
Found at i:45568396 original size:2 final size:2
Alignment explanation
Indices: 45568389--45568413 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
45568379 CAATACATGT
45568389 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
45568414 CTTTGTATGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:45576592 original size:17 final size:19
Alignment explanation
Indices: 45576554--45576702 Score: 184
Period size: 19 Copynumber: 7.9 Consensus size: 19
45576544 AAATTAAATC
*
45576554 TCTAAGATTACAATATCATA
1 TCTAAGATTGC-ATATCATA
45576574 TCTTCTAAGATTGCATATCATA
1 ---TCTAAGATTGCATATCATA
*
45576596 TTTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
*
45576614 TCTAATATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
45576631 TCTAAGATTGCATATCAAA
1 TCTAAGATTGCATATCATA
45576650 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
45576668 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
45576685 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
45576703 TGAAGATTAT
Statistics
Matches: 113, Mismatches: 7, Indels: 16
0.83 0.05 0.12
Matches are distributed among these distances:
17 31 0.27
18 29 0.26
19 35 0.31
22 8 0.07
23 10 0.09
ACGTcount: A:0.38, C:0.15, G:0.09, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:45576628 original size:35 final size:36
Alignment explanation
Indices: 45576577--45576702 Score: 166
Period size: 35 Copynumber: 3.5 Consensus size: 36
45576567 TATCATATCT
*
45576577 TCTAAGATTGCATATCATATTTAAGATTGCAATCATA
1 TCTAAGATTGC-TATCATATCTAAGATTGCAATCATA
* *
45576614 TCTAATATTG-TATCATATCTAAGATTGCATATCAAA
1 TCTAAGATTGCTATCATATCTAAGATTGCA-ATCATA
* *
45576650 TCTAAGATTGCAATCATATCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATATCTAAGATTGCAATCATA
45576685 TCTAAGATTGCATATCAT
1 TCTAAGATTGC-TATCAT
45576703 TGAAGATTAT
Statistics
Matches: 78, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
35 34 0.44
36 19 0.24
37 25 0.32
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.38
Consensus pattern (36 bp):
TCTAAGATTGCTATCATATCTAAGATTGCAATCATA
Found at i:45576645 original size:54 final size:54
Alignment explanation
Indices: 45576577--45576702 Score: 225
Period size: 54 Copynumber: 2.3 Consensus size: 54
45576567 TATCATATCT
* *
45576577 TCTAAGATTGCATATCATATTTAAGATTGCAATCATATCTAATATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
*
45576631 TCTAAGATTGCATATCAAATCTAAGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
45576685 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
45576703 TGAAGATTAT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 68 1.00
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.38
Consensus pattern (54 bp):
TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
Found at i:45576700 original size:14 final size:15
Alignment explanation
Indices: 45576609--45576700 Score: 60
Period size: 17 Copynumber: 5.5 Consensus size: 15
45576599 AAGATTGCAA
*
45576609 TCATATCTAATATTG
1 TCATATCTAAGATTG
45576624 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
*
45576641 CATATCAAATCTAAGATTG
1 ----TCATATCTAAGATTG
45576660 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
45576678 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
45576695 -CATATC
1 TCATATC
45576701 ATTGAAGATT
Statistics
Matches: 67, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
14 6 0.09
17 30 0.45
18 15 0.22
19 16 0.24
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:45580296 original size:416 final size:417
Alignment explanation
Indices: 45579524--45580308 Score: 1437
Period size: 416 Copynumber: 1.9 Consensus size: 417
45579514 CCGACTTTTG
*
45579524 ATTTTATTAAAAAAGGGAGTCGCCACCGATCTTTTTTCCTAGGTGTGATCGGACACCTAATAAAT
1 ATTTTATTAAAAAAGGGAGTCGCCACCGATCATTTTTCCTAGGTGTGATCGGACACCTAATAAAT
45579589 CCTCTTTTTCAAAAGAAAATTTATTTTTTAAACAAAAAGAAAGCCGAGTTTAGGTCTACGTTTAA
66 CCTCTTTTTCAAAAGAAAATTTATTTTTTAAACAAAAAGAAAGCCGAGTTTAGGTCTACGTTTAA
* * *
45579654 AGCCAGAGAAATAAATAGGGTTCGGGAGTCGATTACGCGCGAGGAAGGTATTAGCATCCTCGTGA
131 AGCCAGAGAAATAAATAGGGTTCGGGAGTCGATTACGCACGAGGAAGGTATTAGCACCCTCGCGA
*
45579719 CGCCCAAAATTGATATCTCGTTAAACATGTGTTGTCTTAATTTTCAAAAATACGAGTTCAATGTG
196 CGCCCAAAATTGACATCTCGTTAAACATGTGTTGTCTTAATTTTCAAAAATACGAGTTCAATGTG
*
45579784 ACATTTAATCATGATCCGATCAAAACACGAGAATTTTTATAATTTCGATTTCTTTTGAAAAGGAC
261 ACATTTAATCATGATCCGACCAAAACACGAGAATTTTTATAATTTCGATTTCTTTTGAAAAGGAC
45579849 GTTCCGTTCTTAACACAAGCCGATTGATATTCACCCAACATAGCCCCTCTAATGAAAACATGTGG
326 GTTCCGTTCTTAACACAAGCCGATTGATATTCACCCAACATAGCCCCTCTAATGAAAACATGTGG
45579914 ATCCTGAAGTTGGAGCGGGTCGGGTTA
391 ATCCTGAAGTTGGAGCGGGTCGGGTTA
*
45579941 ATTTTATTAAAAAAGGGAGTCGCCATCGATCATTTTTCCTAGGTGTGATCGGACACCTAATAAAT
1 ATTTTATTAAAAAAGGGAGTCGCCACCGATCATTTTTCCTAGGTGTGATCGGACACCTAATAAAT
*
45580006 CCTCTTTTTCAAAAGAAAATTTATTTTTTAAACAAAAAGAAGGCCGAGTTTAGGTCTACGTTTAA
66 CCTCTTTTTCAAAAGAAAATTTATTTTTTAAACAAAAAGAAAGCCGAGTTTAGGTCTACGTTTAA
*
45580071 AGCCAGAGAAA-AAATAGGGTTCGGGAGTCGGTTACGCACGAGGAAGGTATTAGCACCCTCGCGA
131 AGCCAGAGAAATAAATAGGGTTCGGGAGTCGATTACGCACGAGGAAGGTATTAGCACCCTCGCGA
*
45580135 CGCCCAAAATTGGCATCTCGTTAAACATGTGTTGTCTTAATTTTCAAAAATACGAGTTCAATGTG
196 CGCCCAAAATTGACATCTCGTTAAACATGTGTTGTCTTAATTTTCAAAAATACGAGTTCAATGTG
* *
45580200 ACATTTAATCATGATCTGACCAAAACACGAGAATTTTTATAATTTCGTTTTCTTTTGAAAAGGAC
261 ACATTTAATCATGATCCGACCAAAACACGAGAATTTTTATAATTTCGATTTCTTTTGAAAAGGAC
* *
45580265 GTTTCGTTTTTAACACAAGCCGATTGATATTCACCCAACATAGC
326 GTTCCGTTCTTAACACAAGCCGATTGATATTCACCCAACATAGC
45580309 GATGAAATCT
Statistics
Matches: 354, Mismatches: 14, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
416 216 0.61
417 138 0.39
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.31
Consensus pattern (417 bp):
ATTTTATTAAAAAAGGGAGTCGCCACCGATCATTTTTCCTAGGTGTGATCGGACACCTAATAAAT
CCTCTTTTTCAAAAGAAAATTTATTTTTTAAACAAAAAGAAAGCCGAGTTTAGGTCTACGTTTAA
AGCCAGAGAAATAAATAGGGTTCGGGAGTCGATTACGCACGAGGAAGGTATTAGCACCCTCGCGA
CGCCCAAAATTGACATCTCGTTAAACATGTGTTGTCTTAATTTTCAAAAATACGAGTTCAATGTG
ACATTTAATCATGATCCGACCAAAACACGAGAATTTTTATAATTTCGATTTCTTTTGAAAAGGAC
GTTCCGTTCTTAACACAAGCCGATTGATATTCACCCAACATAGCCCCTCTAATGAAAACATGTGG
ATCCTGAAGTTGGAGCGGGTCGGGTTA
Found at i:45581283 original size:30 final size:30
Alignment explanation
Indices: 45581242--45581340 Score: 153
Period size: 30 Copynumber: 3.3 Consensus size: 30
45581232 TAGGTACAAG
45581242 TGGTGGTGGAGCAAGTGTGGATAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGATAGTGGAGT
* * *
45581272 AGGTAGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGATAGTGGAGT
* *
45581302 TGGTGGTTGAGCAAGTGTGGTTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGATAGTGGAGT
45581332 TGGTGGTGG
1 TGGTGGTGG
45581341 GAAAGGCTAG
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 61 1.00
ACGTcount: A:0.18, C:0.04, G:0.49, T:0.28
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGATAGTGGAGT
Found at i:45581676 original size:44 final size:44
Alignment explanation
Indices: 45581616--45581732 Score: 111
Period size: 44 Copynumber: 2.7 Consensus size: 44
45581606 CAATATAGAC
* * *
45581616 AAAAATATATACATAATGT-AGTATTGAAAATATTTACATAATAT
1 AAAAATATATACATAATATGA-TATTAAAAATATATACATAATAT
45581660 AAAAATATATGA-ATAATATGATATTAAAAATATATACATAAAAATAT
1 AAAAATATAT-ACATAATATGATATTAAAAATATATACAT---AATAT
45581707 AATAAATATAT--ATAATAT-ATA-TAAAA
1 AA-AAATATATACATAATATGATATTAAAA
45581733 TGTATAAAAT
Statistics
Matches: 64, Mismatches: 3, Indels: 12
0.81 0.04 0.15
Matches are distributed among these distances:
44 37 0.58
45 5 0.08
46 7 0.11
47 7 0.11
48 8 0.12
ACGTcount: A:0.59, C:0.03, G:0.04, T:0.34
Consensus pattern (44 bp):
AAAAATATATACATAATATGATATTAAAAATATATACATAATAT
Found at i:45581700 original size:25 final size:24
Alignment explanation
Indices: 45581616--45581748 Score: 87
Period size: 25 Copynumber: 6.0 Consensus size: 24
45581606 CAATATAGAC
*
45581616 AAAAATATATACATAATGTAGTATT
1 AAAAATATATACATAATATA-TATT
* *
45581641 GAAAATATTTAC---ATA-ATA-T
1 AAAAATATATACATAATATATATT
45581660 AAAAATATATGA-ATAATATGATATT
1 AAAAATATAT-ACATAATAT-ATATT
*
45581685 AAAAATATATACATAA-AAATA-T
1 AAAAATATATACATAATATATATT
45581707 AATAAATATAT--ATAATATATA-T
1 AA-AAATATATACATAATATATATT
*
45581729 -AAAATGTATA-A-AATATATAT
1 AAAAATATATACATAATATATAT
45581749 AATACATACA
Statistics
Matches: 88, Mismatches: 8, Indels: 28
0.71 0.06 0.23
Matches are distributed among these distances:
19 9 0.10
20 18 0.20
21 7 0.08
22 13 0.15
23 11 0.12
24 5 0.06
25 25 0.28
ACGTcount: A:0.58, C:0.02, G:0.05, T:0.35
Consensus pattern (24 bp):
AAAAATATATACATAATATATATT
Found at i:45581726 original size:11 final size:10
Alignment explanation
Indices: 45581656--45581750 Score: 65
Period size: 9 Copynumber: 9.6 Consensus size: 10
45581646 TATTTACATA
*
45581656 ATATAAAAAT
1 ATATAAATAT
*
45581666 ATATGAATA-
1 ATATAAATAT
*
45581675 ATAT-GATAT
1 ATATAAATAT
*
45581684 -TAAAAATAT
1 ATATAAATAT
*
45581693 ATACATAAAAAT
1 AT--ATAAATAT
45581705 ATAATAAATAT
1 AT-ATAAATAT
45581716 ATAT-AATAT
1 ATATAAATAT
45581725 ATATAAA-AT
1 ATATAAATAT
*
45581734 GTATAAAATAT
1 ATAT-AAATAT
45581745 ATATAA
1 ATATAA
45581751 TACATACACA
Statistics
Matches: 66, Mismatches: 11, Indels: 16
0.71 0.12 0.17
Matches are distributed among these distances:
8 5 0.08
9 22 0.33
10 17 0.26
11 14 0.21
12 8 0.12
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (10 bp):
ATATAAATAT
Found at i:45581853 original size:23 final size:23
Alignment explanation
Indices: 45581808--45581853 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
45581798 AATACCTCAT
* *
45581808 AAATATATACATATATATGTTAA
1 AAATAAATACATATATATATTAA
45581831 AAATAAATACATAT-TAATATTAA
1 AAATAAATACATATAT-ATATTAA
45581854 GATGATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 1 0.05
23 19 0.95
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (23 bp):
AAATAAATACATATATATATTAA
Found at i:45583782 original size:30 final size:30
Alignment explanation
Indices: 45583741--45583839 Score: 153
Period size: 30 Copynumber: 3.3 Consensus size: 30
45583731 TAGGTACAAG
45583741 TGGTGGTGGAGCAAGTGTGGATAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGATAGTGGAGT
* * *
45583771 AGGTAGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGATAGTGGAGT
* *
45583801 TGGTGGTTGAGCAAGTGTGGTTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGATAGTGGAGT
45583831 TGGTGGTGG
1 TGGTGGTGG
45583840 GAAAGGCTAG
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 61 1.00
ACGTcount: A:0.18, C:0.04, G:0.49, T:0.28
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGATAGTGGAGT
Found at i:45584174 original size:44 final size:43
Alignment explanation
Indices: 45584114--45584215 Score: 109
Period size: 44 Copynumber: 2.3 Consensus size: 43
45584104 CAATATAGAC
* *
45584114 AAAAATATATACATAATGT-AGTATTGAAAATATTTACATAATAT
1 AAAAATATATACATAATATGA-TATT-AAAATATATACATAATAT
45584158 AAAAATATATGA-ATAATATGATATTAAAATATATACATAAAAATAT
1 AAAAATATAT-ACATAATATGATATTAAAATATATACAT---AATAT
45584204 AATAAATATATA
1 AA-AAATATATA
45584216 TAATATATAG
Statistics
Matches: 50, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
43 12 0.24
44 20 0.40
45 2 0.04
46 8 0.16
47 8 0.16
ACGTcount: A:0.58, C:0.03, G:0.05, T:0.34
Consensus pattern (43 bp):
AAAAATATATACATAATATGATATTAAAATATATACATAATAT
Found at i:45584349 original size:22 final size:22
Alignment explanation
Indices: 45584305--45584349 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
45584295 AATACCTCAT
* *
45584305 AAATATATACATATATATGTTA
1 AAATAAATACATATATATATTA
45584327 AAATAAATACATAT-TAATATTA
1 AAATAAATACATATAT-ATATTA
45584349 A
1 A
45584350 GATGATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 1 0.05
22 19 0.95
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.38
Consensus pattern (22 bp):
AAATAAATACATATATATATTA
Found at i:45584787 original size:35 final size:35
Alignment explanation
Indices: 45584717--45584787 Score: 81
Period size: 35 Copynumber: 2.0 Consensus size: 35
45584707 GAATGTGAAT
* *
45584717 TGTTTGGAAATGTGATTTATGGCATGAATGTTAAA
1 TGTTTGGAAATGTGATCTATGGCATGAATGATAAA
* * *
45584752 TGTTTGGTAATGTGGTCTATTG-ATGAGATGATAAA
1 TGTTTGGAAATGTGATCTATGGCATGA-ATGATAAA
45584787 T
1 T
45584788 TTGTGTGTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
34 4 0.13
35 26 0.87
ACGTcount: A:0.30, C:0.03, G:0.27, T:0.41
Consensus pattern (35 bp):
TGTTTGGAAATGTGATCTATGGCATGAATGATAAA
Found at i:45585307 original size:11 final size:11
Alignment explanation
Indices: 45585291--45585316 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
45585281 CAAAAAAATA
45585291 TTTTAATAATT
1 TTTTAATAATT
45585302 TTTTAATAATT
1 TTTTAATAATT
45585313 TTTT
1 TTTT
45585317 TGGTGTCTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (11 bp):
TTTTAATAATT
Found at i:45608383 original size:19 final size:19
Alignment explanation
Indices: 45608359--45608401 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
45608349 TTTACGTAAA
45608359 TATTTTAATTGAAATAAGG
1 TATTTTAATTGAAATAAGG
*
45608378 TATTTTAATTTAAATAAGG
1 TATTTTAATTGAAATAAGG
*
45608397 CATTT
1 TATTT
45608402 AGACTAATGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.40, C:0.02, G:0.12, T:0.47
Consensus pattern (19 bp):
TATTTTAATTGAAATAAGG
Found at i:45612631 original size:28 final size:28
Alignment explanation
Indices: 45612599--45612659 Score: 113
Period size: 28 Copynumber: 2.2 Consensus size: 28
45612589 TATGCTAGAA
45612599 TCAATCTTTTAGTTATAGGATTTACTAG
1 TCAATCTTTTAGTTATAGGATTTACTAG
*
45612627 TCAATCTTTTAGTTATTGGATTTACTAG
1 TCAATCTTTTAGTTATAGGATTTACTAG
45612655 TCAAT
1 TCAAT
45612660 TAAAAGGATA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.28, C:0.11, G:0.13, T:0.48
Consensus pattern (28 bp):
TCAATCTTTTAGTTATAGGATTTACTAG
Found at i:45615801 original size:161 final size:161
Alignment explanation
Indices: 45615536--45615831 Score: 565
Period size: 161 Copynumber: 1.8 Consensus size: 161
45615526 AGTTTCCTAG
45615536 TATCATTTAGCATTAATATTACACAAAGTGGCCAATGTTCTCTACTTTCCCTTTAACATGGCCAA
1 TATCATTTAGCATTAATATTACACAAAGTGGCCAATGTTCTCTACTTTCCCTTTAACATGGCCAA
*
45615601 ATATACCAAGTAAATTTTCAATTTATTTTTATTTCTTTTTCACACTTCTAACAAACTAGAATTCA
66 ATATACCAAGTAAATTTTCAATTCATTTTTATTTCTTTTTCACACTTCTAACAAACTAGAATTCA
45615666 TCTTCACCAAAATACTCACTGCTTCACAAGC
131 TCTTCACCAAAATACTCACTGCTTCACAAGC
45615697 TATCATTTAGCATTAATATTACACAAAGTGGCCAATGTTCTCTACTTTCCCTTTAACATGGCCAA
1 TATCATTTAGCATTAATATTACACAAAGTGGCCAATGTTCTCTACTTTCCCTTTAACATGGCCAA
* *
45615762 ATATACCAAGTAAATTTTCCATTCATTTTTATTTCTTTTTCACACTTCTAACAAGCTAGAATTCA
66 ATATACCAAGTAAATTTTCAATTCATTTTTATTTCTTTTTCACACTTCTAACAAACTAGAATTCA
45615827 TCTTC
131 TCTTC
45615832 TAATCATTTC
Statistics
Matches: 132, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
161 132 1.00
ACGTcount: A:0.32, C:0.23, G:0.07, T:0.39
Consensus pattern (161 bp):
TATCATTTAGCATTAATATTACACAAAGTGGCCAATGTTCTCTACTTTCCCTTTAACATGGCCAA
ATATACCAAGTAAATTTTCAATTCATTTTTATTTCTTTTTCACACTTCTAACAAACTAGAATTCA
TCTTCACCAAAATACTCACTGCTTCACAAGC
Found at i:45616167 original size:18 final size:18
Alignment explanation
Indices: 45616136--45616181 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
45616126 TGTGTTATAA
* *
45616136 TATTAATTAATAAAATAT
1 TATTACTTATTAAAATAT
45616154 TATTACTTATTAAAATAT
1 TATTACTTATTAAAATAT
45616172 TATTACTTAT
1 TATTACTTAT
45616182 GATGATGATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (18 bp):
TATTACTTATTAAAATAT
Found at i:45620312 original size:178 final size:180
Alignment explanation
Indices: 45620006--45620948 Score: 927
Period size: 178 Copynumber: 5.2 Consensus size: 180
45619996 AAGATTGAAG
* *
45620006 ATCTTATCTCCATGTATCGGTAATGGAGCAGATTTTACTACCAAGCCTTATCTCTCT-AAGGTAG
1 ATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTACCACCAAGCCTTATCTCTCTGAA-GTAG
* *
45620070 CAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTCCTGAAGTAGCAAGGAAGCAGACTGAGAATTG
65 CAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAGAATTG
* *
45620135 AAGATTTTATTTCCCTGAAGTTGTAGCGGAGCAGATCTTCGTAGAT-G-GA
130 AAGATTTTATCTCCCTGAAGTTGCAGCGGAGCAGATCTTCGTAGATGGTGA
* * *
45620184 ATCTTATCTCCATGTATCGGCAATGGAGCAGATTTCACCACCAAGCTTTATCTCTCTGAGGTAGC
1 ATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTACCACCAAGCCTTATCTCTCTGAAGTAGC
* * * *
45620249 GAGAGAGCAGGCTGAAGAATAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCATACTAAGAATTGA
66 AAGAGAGCAGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAGAATTGA
*
45620314 AGATTTTATCTCCCTGAAGTTGCAGCGGATCAGATCTTCGCAAATCTTCACAGATGGTGA
131 AGATTTTATCTCCCTGAAGTTGCAGCGGAGCAGATCTTCG-------T---AGATGGTGA
* * * *
45620374 ATCTCATCTCCATGTATCGGCAATGGAGCAGATTTTACCACCAGGTCTTATCTCTCTGAAGTAGT
1 ATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTACCACCAAGCCTTATCTCTCTGAAGTAGC
* * * *
45620439 AGGAGAGCAGGTTGAAGTATGAGTCTTATCTTCCTGAGGTAGTAAGGAAGCAGAC-AGAGATTTG
66 AAGAGAGCAGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTA-AGAATTG
* *
45620503 GAGATTTTATCTCCCTGAAGTTGCAGCGGAGCAGATCTTCGCAGATGGTGA
130 AAGATTTTATCTCCCTGAAGTTGCAGCGGAGCAGATCTTCGTAGATGGTGA
* * * * * * * *
45620554 ATCTTATCTCCATGTATCAGCAGTGGAACAAATTTTACCACTAAACCTTATCTCCCTGAAGAAGC
1 ATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTACCACCAAGCCTTATCTCTCTGAAGTAGC
* * *
45620619 AAGAGAGCAAGTTGAAG-ATGGTAGTCTTATTTTCCTGAGGTAGCAAGGAAGTAGACTGAAGATT
66 AAGAGAGCAGGTTGAAGAAT-G-AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACT--A-A--
* ** * * *
45620683 GAAGATTGAAGATCTTATCTCCCT-AAGCAGTAGTGGAGCAG---GTCG-AGGATGGTGA
124 G-A-ATTGAAGATTTTATCTCCCTGAAGTTGCAGCGGAGCAGATCTTCGTA-GATGGTGA
* * * * * * *
45620738 ATCTTATCTCCATGAATCGGTAATGGAGTAGATTTTAACTATCGA-CCTTATCTCTCTGAGGTAG
1 ATCTTATCTCCATGTATCGGCAATGGAGCAGATTTT-ACCACCAAGCCTTATCTCTCTGAAGTAG
* ** * * *
45620802 CAAGCGAGCAGGTTGGCGATTGTAGTCTTATCTT-CTAGAGGT-GACAAAGAAACAGACTGAAG-
65 CAAGAGAGCAGGTTGAAGAATG-AGTCTTATCTTCCT-GAGGTAG-CAAGGAAGCAGACT-AAGA
* ** * * *
45620864 ATTGAAGATTTTATCCCCCTG-AGATTGCAGTAGAACAGA--TT-GAAAAT-G-GA
126 ATTGAAGATTTTATCTCCCTGAAG-TTGCAGCGGAGCAGATCTTCGTAGATGGTGA
* * *
45620914 ATGTCATCTCCATGTATCGGTAATGGAGCAGATTT
1 ATCTTATCTCCATGTATCGGCAATGGAGCAGATTT
45620949 AATCTCATCT
Statistics
Matches: 639, Mismatches: 94, Indels: 66
0.80 0.12 0.08
Matches are distributed among these distances:
176 33 0.05
177 21 0.03
178 166 0.26
179 5 0.01
180 79 0.12
181 31 0.05
182 1 0.00
183 5 0.01
184 101 0.16
185 6 0.01
186 1 0.00
187 14 0.02
188 21 0.03
189 2 0.00
190 153 0.24
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (180 bp):
ATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTACCACCAAGCCTTATCTCTCTGAAGTAGC
AAGAGAGCAGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAGAATTGA
AGATTTTATCTCCCTGAAGTTGCAGCGGAGCAGATCTTCGTAGATGGTGA
Found at i:45620512 original size:190 final size:181
Alignment explanation
Indices: 45620364--45620893 Score: 456
Period size: 184 Copynumber: 2.9 Consensus size: 181
45620354 CAAATCTTCA
* * *
45620364 CAGATGGTGAATCTCATCTCCATGTATCGGCAATGGAGCAGATTTTACCACCAGGTCTTATCTCT
1 CAGATGGTGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTACCACCAAGCCTTATCTCT
* * * *
45620429 CTGAAGTAGTAGGAGAGCAGGTTGAAGTATGAGTCTTATCTTCCTGAGGTAGTAAGGAAGCAGAC
66 CTGAAGTAGCAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGAC
* *
45620494 AGAGATTTGGAGATTTTATCTCCCTGAAGTTGCAGCGGAGCAGATCTTCG-
131 AGAGAATTGAAGATTTTATCTCCCTGAAGTTGCAGCGGAGCAGATCTTCGT
* * * * * * *
45620544 CAGATGGTGAATCTTATCTCCATGTATCAGCAGTGGAACAAATTTTACCACTAAACCTTATCTCC
1 CAGATGGTGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTACCACCAAGCCTTATCTCT
* * * *
45620609 CTGAAGAAGCAAGAGAGCAAGTTGAAG-ATGGTAGTCTTATTTTCCTGAGGTAGCAAGGAAGTAG
66 CTGAAGTAGCAAGAGAGCAGGTTGAAGAAT-G-AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAG
* ** * * *
45620673 ACTGAAGATTGAAGATTGAAGATCTTATCTCCCT-AAGCAGTAGTGGAGCAG---GTCG-
129 AC---AGA--G-A-ATTGAAGATTTTATCTCCCTGAAGTTGCAGCGGAGCAGATCTTCGT
* * * * * *
45620728 -AGGATGGTGAATCTTATCTCCATGAATCGGTAATGGAGTAGATTTTAACTATCGA-CCTTATCT
1 CA-GATGGTGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTT-ACCACCAAGCCTTATCT
* * ** * * *
45620791 CTCTGAGGTAGCAAGCGAGCAGGTTGGCGATTGTAGTCTTATCTT-CTAGAGGT-GACAAAGAAA
64 CTCTGAAGTAGCAAGAGAGCAGGTTGAAGAATG-AGTCTTATCTTCCT-GAGGTAG-CAAGGAAG
* *
45620854 CAGACTGA-AGATTGAAGATTTTATCCCCCTG-AGATTGCAG
126 CAGACAGAGA-ATTGAAGATTTTATCTCCCTGAAG-TTGCAG
45620894 TAGAACAGAT
Statistics
Matches: 280, Mismatches: 54, Indels: 34
0.76 0.15 0.09
Matches are distributed among these distances:
177 22 0.08
178 3 0.01
179 2 0.01
180 79 0.28
181 33 0.12
183 4 0.01
184 100 0.36
185 5 0.02
186 1 0.00
187 14 0.05
188 17 0.06
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (181 bp):
CAGATGGTGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTACCACCAAGCCTTATCTCT
CTGAAGTAGCAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGAC
AGAGAATTGAAGATTTTATCTCCCTGAAGTTGCAGCGGAGCAGATCTTCGT
Found at i:45630252 original size:37 final size:37
Alignment explanation
Indices: 45630141--45630230 Score: 144
Period size: 37 Copynumber: 2.4 Consensus size: 37
45630131 CCTGGAAGAC
*
45630141 AAAAGACGGAGATGAATAGTAATGATTCTCTACAAAG
1 AAAAGACGGAGATGAATAGTAATGATTCTCTACAAAA
** *
45630178 AAAAGACAAAGATGAATAGTAATAATTCTCTACAAAA
1 AAAAGACGGAGATGAATAGTAATGATTCTCTACAAAA
45630215 AAAAGACGGAGATGAA
1 AAAAGACGGAGATGAA
45630231 CAATAACGGT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 47 1.00
ACGTcount: A:0.52, C:0.10, G:0.19, T:0.19
Consensus pattern (37 bp):
AAAAGACGGAGATGAATAGTAATGATTCTCTACAAAA
Found at i:45630683 original size:3 final size:3
Alignment explanation
Indices: 45630675--45630714 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
45630665 GTTAAAGTTG
45630675 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
45630715 ACAAAAAGTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:45631176 original size:14 final size:14
Alignment explanation
Indices: 45631157--45631194 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
45631147 TGTTTCACTG
45631157 AAAATGACTTCCGA
1 AAAATGACTTCCGA
* *
45631171 AAAATGATTTCTGA
1 AAAATGACTTCCGA
45631185 AAAATGACTT
1 AAAATGACTT
45631195 ACTTTTCTAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.45, C:0.13, G:0.13, T:0.29
Consensus pattern (14 bp):
AAAATGACTTCCGA
Found at i:45641270 original size:37 final size:37
Alignment explanation
Indices: 45641223--45641293 Score: 133
Period size: 37 Copynumber: 1.9 Consensus size: 37
45641213 CTAATTCCAT
45641223 CACCCTACTAAACCATCCACTACCTCCATCACCCTCA
1 CACCCTACTAAACCATCCACTACCTCCATCACCCTCA
*
45641260 CACCCTACTAAACCATCCACTACCTCTATCACCC
1 CACCCTACTAAACCATCCACTACCTCCATCACCC
45641294 CCACTAACTC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.30, C:0.51, G:0.00, T:0.20
Consensus pattern (37 bp):
CACCCTACTAAACCATCCACTACCTCCATCACCCTCA
Found at i:45641299 original size:18 final size:18
Alignment explanation
Indices: 45641276--45641311 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
45641266 ACTAAACCAT
* *
45641276 CCACTACCTCTATCACCC
1 CCACTAACTCCATCACCC
45641294 CCACTAACTCCATCACCC
1 CCACTAACTCCATCACCC
45641312 TACTTGTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.25, C:0.56, G:0.00, T:0.19
Consensus pattern (18 bp):
CCACTAACTCCATCACCC
Found at i:45641716 original size:60 final size:60
Alignment explanation
Indices: 45641596--45641720 Score: 150
Period size: 59 Copynumber: 2.1 Consensus size: 60
45641586 TTTATTTTTG
* *
45641596 TTATTTTACTGTTAAATTAATTAATTTGAGCTCTATTCTCATTATTTTTATATTTTTTTA
1 TTATTTTACTATTAAATTAATTAATTTGAGCTCTATTCTCATTATTTTTATATTTATTTA
* *
45641656 TTATTTT-CTATTAATTTAATTAATTTGAG-T-TATGTTTC-TTATTATTATATTATTTATTTA
1 TTATTTTACTATTAAATTAATTAATTTGAGCTCTAT-TCTCATTATT-TT-TA-TATTTATTTA
45641716 TTATT
1 TTATT
45641721 ATATATTTAT
Statistics
Matches: 57, Mismatches: 4, Indels: 8
0.83 0.06 0.12
Matches are distributed among these distances:
57 8 0.14
58 6 0.11
59 22 0.39
60 21 0.37
ACGTcount: A:0.27, C:0.06, G:0.05, T:0.62
Consensus pattern (60 bp):
TTATTTTACTATTAAATTAATTAATTTGAGCTCTATTCTCATTATTTTTATATTTATTTA
Found at i:45641718 original size:19 final size:18
Alignment explanation
Indices: 45641694--45641731 Score: 67
Period size: 19 Copynumber: 2.1 Consensus size: 18
45641684 GTTATGTTTC
45641694 TTATTATTATATTATTTAT
1 TTATTATTATA-TATTTAT
45641713 TTATTATTATATATTTAT
1 TTATTATTATATATTTAT
45641731 T
1 T
45641732 ATGTAAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TTATTATTATATATTTAT
Found at i:45641722 original size:63 final size:60
Alignment explanation
Indices: 45641586--45641722 Score: 152
Period size: 60 Copynumber: 2.2 Consensus size: 60
45641576 TTAACCCCTT
* * *
45641586 TTTATTTTTGTTATTTTACTGTTAAATTAATTAATTTGAGCTCTATTCTCATTATTTTTA
1 TTTATTTTTATTATTTTACTATTAAATTAATTAATTTGAGCTATATTCTCATTATTTTTA
* * * *
45641646 TATT-TTTTTATTATTTT-CTATTAATTTAATTAATTTGAGTTATGTTTCTTATTATTATATTA
1 T-TTATTTTTATTATTTTACTATTAAATTAATTAATTTGAGCTAT-ATTCTCATTATT-T-TTA
45641708 TTTATTTATTATTAT
1 TTTATTT-TTATTAT
45641723 ATATTTATTA
Statistics
Matches: 64, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
59 22 0.34
60 23 0.36
61 5 0.08
62 7 0.11
63 7 0.11
ACGTcount: A:0.26, C:0.05, G:0.05, T:0.64
Consensus pattern (60 bp):
TTTATTTTTATTATTTTACTATTAAATTAATTAATTTGAGCTATATTCTCATTATTTTTA
Found at i:45641730 original size:11 final size:12
Alignment explanation
Indices: 45641694--45641733 Score: 50
Period size: 11 Copynumber: 3.6 Consensus size: 12
45641684 GTTATGTTTC
45641694 TTATTAT-TATA
1 TTATTATATATA
*
45641705 TTATT-TATTTA
1 TTATTATATATA
45641716 TTATTATATAT-
1 TTATTATATATA
45641727 TTATTAT
1 TTATTAT
45641734 GTAAATATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
10 1 0.04
11 20 0.80
12 4 0.16
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TTATTATATATA
Found at i:45641743 original size:17 final size:14
Alignment explanation
Indices: 45641703--45641733 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
45641693 CTTATTATTA
*
45641703 TATTATTTATTTAT
1 TATTATATATTTAT
45641717 TATTATATATTTAT
1 TATTATATATTTAT
45641731 TAT
1 TAT
45641734 GTAAATATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TATTATATATTTAT
Found at i:45641958 original size:21 final size:21
Alignment explanation
Indices: 45641934--45641975 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
45641924 CCATATATAA
45641934 TGTTATCATCAACATATTTTT
1 TGTTATCATCAACATATTTTT
* * *
45641955 TGTTATTATCATCATGTTTTT
1 TGTTATCATCAACATATTTTT
45641976 AATATTATTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.24, C:0.12, G:0.07, T:0.57
Consensus pattern (21 bp):
TGTTATCATCAACATATTTTT
Found at i:45642050 original size:21 final size:21
Alignment explanation
Indices: 45642007--45642059 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
45641997 AGCACAATGT
*
45642007 TTATTAC-ATTATTGTATTTA
1 TTATTACTATTATTGTATTAA
* *
45642027 TTATTACTATTGTTTTATTAA
1 TTATTACTATTATTGTATTAA
*
45642048 TTATTTCTATTA
1 TTATTACTATTA
45642060 ATTACTAATA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 7 0.26
21 20 0.74
ACGTcount: A:0.28, C:0.06, G:0.04, T:0.62
Consensus pattern (21 bp):
TTATTACTATTATTGTATTAA
Found at i:45642416 original size:126 final size:126
Alignment explanation
Indices: 45642191--45642432 Score: 439
Period size: 126 Copynumber: 1.9 Consensus size: 126
45642181 TTGATCTTCT
* * *
45642191 CTCAAAATTTTTCAAAATAAAGGCAATGTTCTGTATTTAAAGAATTCGAAGAATCGTGCCCTAAC
1 CTCAAAAATTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCGAAAAATCGTGCCCTAAC
45642256 GTACTGAGTTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAGTTCACC
66 GTACTGAGTTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAGTTCACC
45642317 CTCAAAAATTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCGAAAAATCGTGCCCTAAC
1 CTCAAAAATTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCGAAAAATCGTGCCCTAAC
* *
45642382 GTACTGGGTTTCGCTTTCTTTGTTTGTTTTGAATATTCGAATATCCTCTTA
66 GTACTGAGTTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTA
45642433 AGGCTAAAAC
Statistics
Matches: 111, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
126 111 1.00
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (126 bp):
CTCAAAAATTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCGAAAAATCGTGCCCTAAC
GTACTGAGTTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAGTTCACC
Found at i:45648739 original size:50 final size:50
Alignment explanation
Indices: 45648624--45648816 Score: 296
Period size: 50 Copynumber: 3.8 Consensus size: 50
45648614 GATAATAACA
* ** * *
45648624 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * *
45648675 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
45648725 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
45648775 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
45648817 TTACCCAAAT
Statistics
Matches: 129, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
50 96 0.74
51 33 0.26
ACGTcount: A:0.20, C:0.30, G:0.23, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:45648932 original size:13 final size:13
Alignment explanation
Indices: 45648911--45648941 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
45648901 GCTTAGATCA
*
45648911 TCATCAAATAAAT
1 TCATAAAATAAAT
45648924 TCATAAAATAAAT
1 TCATAAAATAAAT
45648937 TCATA
1 TCATA
45648942 GTTGCTGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:45649204 original size:29 final size:29
Alignment explanation
Indices: 45649154--45649209 Score: 69
Period size: 30 Copynumber: 1.9 Consensus size: 29
45649144 CCTCGACTCT
*
45649154 AACTTTTTCAAAATTATAATTTTGCCCCTA
1 AACTTTTACAAAATTATAATTTT-CCCCTA
* *
45649184 AACTTTTACATAATTA-CATTTTCCCC
1 AACTTTTACAAAATTATAATTTTCCCC
45649210 AAGGCTCGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 4 0.17
29 5 0.22
30 14 0.61
ACGTcount: A:0.32, C:0.23, G:0.02, T:0.43
Consensus pattern (29 bp):
AACTTTTACAAAATTATAATTTTCCCCTA
Found at i:45656276 original size:50 final size:50
Alignment explanation
Indices: 45656161--45656353 Score: 296
Period size: 50 Copynumber: 3.8 Consensus size: 50
45656151 GATAATAACA
* ** * *
45656161 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * *
45656212 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
45656262 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
45656312 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
45656354 TTACCCAAAT
Statistics
Matches: 129, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
50 96 0.74
51 33 0.26
ACGTcount: A:0.20, C:0.30, G:0.23, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:45656469 original size:13 final size:13
Alignment explanation
Indices: 45656448--45656478 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
45656438 GCTTAGATCA
*
45656448 TCATCAAATAAAT
1 TCATAAAATAAAT
45656461 TCATAAAATAAAT
1 TCATAAAATAAAT
45656474 TCATA
1 TCATA
45656479 GTTGCTGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:45662084 original size:28 final size:28
Alignment explanation
Indices: 45662030--45662084 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 28
45662020 ATAAAAATTC
* * *
45662030 ATTATAGTTTGAATATTAATATCAATAT
1 ATTATAATTTAAATAATAATATCAATAT
* *
45662058 ATTATAATTTAAATAATATTATTAATA
1 ATTATAATTTAAATAATAATATCAATA
45662085 ATTTCTTACA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (28 bp):
ATTATAATTTAAATAATAATATCAATAT
Found at i:45662826 original size:14 final size:15
Alignment explanation
Indices: 45662807--45662839 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
45662797 AAAAAAGTAA
45662807 AATTTT-AATAATTT
1 AATTTTGAATAATTT
*
45662821 AATTTTGAATACTTT
1 AATTTTGAATAATTT
45662836 AATT
1 AATT
45662840 AAAAAATTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.55
Consensus pattern (15 bp):
AATTTTGAATAATTT
Found at i:45663836 original size:15 final size:16
Alignment explanation
Indices: 45663816--45663846 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
45663806 ATGAAAATTA
45663816 TTTAAAA-TTATTATT
1 TTTAAAATTTATTATT
45663831 TTTAAAATTTATTATT
1 TTTAAAATTTATTATT
45663847 AAATAAATAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTAAAATTTATTATT
Found at i:45663990 original size:27 final size:27
Alignment explanation
Indices: 45663939--45663995 Score: 64
Period size: 26 Copynumber: 2.1 Consensus size: 27
45663929 AATAGGTATG
*
45663939 TTTAAATATATTGAAAAATACAAT-AT
1 TTTAAATATATTGAAAAATAAAATAAT
*
45663965 TTTAAATATTTTTG-AAAATAAAAATAAT
1 TTTAAATA-TATTGAAAAAT-AAAATAAT
45663993 TTT
1 TTT
45663996 TTTATTAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
26 13 0.50
27 8 0.31
28 5 0.19
ACGTcount: A:0.51, C:0.02, G:0.04, T:0.44
Consensus pattern (27 bp):
TTTAAATATATTGAAAAATAAAATAAT
Found at i:45672113 original size:46 final size:46
Alignment explanation
Indices: 45672060--45672235 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 46
45672050 TGTTTGGGCA
*
45672060 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAACG
* *** * * * *
45672106 TCTGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCTA-ACG
* * *
45672153 TCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAACG
*
45672199 -CCCAAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
45672236 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 23, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
45 3 0.03
46 67 0.65
47 33 0.32
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAACG
Found at i:45672215 original size:93 final size:93
Alignment explanation
Indices: 45672056--45672227 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
45672046 AGGATGTTTG
* * * **
45672056 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAATGTCTGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGTCCCAACTCGTTGAG
45672121 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
*
45672149 GGCATCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACG-CCCAAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGTCCCAA-CTCGTTGA
45672213 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
45672228 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 3 0.04
93 69 0.96
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGTCCCAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:45680006 original size:64 final size:64
Alignment explanation
Indices: 45679905--45680032 Score: 220
Period size: 64 Copynumber: 2.0 Consensus size: 64
45679895 TCATTCATAA
*
45679905 CACATCTAATTAGGAGCATTTGATTTATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
1 CACATCTAATTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
* * *
45679969 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGTATCCTAATTATTTGGCATAAGCAT
1 CACATCTAATTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
45680033 AGATATATGA
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 60 1.00
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (64 bp):
CACATCTAATTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
Found at i:45680402 original size:177 final size:177
Alignment explanation
Indices: 45680094--45680660 Score: 929
Period size: 177 Copynumber: 3.2 Consensus size: 177
45680084 CATCGGTGAA
* * * * *
45680094 AATTACGGATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGAGTCTTATCTCCA
1 AATTACAGATCTTATCTCCATGTATCGGCTATAGAGCAGATCGAAATTGGCGGGTCTTATCTCTA
*
45680159 TGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAACAGGT
66 TGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGT
* *
45680224 TGAAGATACAAATCTTATCTTCCTGAAGTTGCATGAAGCAGACTGAG
131 TGAAGATACAAGTCTTATCTTCCTGAAGTTGCAAGAAGCAGACTGAG
*
45680271 AATTACAGATCTTATTTCCATGTATCGGCTATAGAGCAGATCGAAATTGGCGGGTCTTATCTCTA
1 AATTACAGATCTTATCTCCATGTATCGGCTATAGAGCAGATCGAAATTGGCGGGTCTTATCTCTA
* *
45680336 TGTATCGACTATGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGT
66 TGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGT
* *
45680401 TGAAGATACAAGTCTTATCTTCCTAAAGTTGCAGGAAGCAGACTGAG
131 TGAAGATACAAGTCTTATCTTCCTGAAGTTGCAAGAAGCAGACTGAG
* * *
45680448 AATTACAAATCTTATCTCCATGTATCGGCTATAAAGCAGATCAAAATTGGCGGGTCTTATCTCTA
1 AATTACAGATCTTATCTCCATGTATCGGCTATAGAGCAGATCGAAATTGGCGGGTCTTATCTCTA
* * *
45680513 TGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTAATGTAGCAAGAGAGCAGGC
66 TGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGT
*
45680578 TGAAGATACAAGTCTTATCTT-CTGAAGTTGCAAGAAGCAGACTGAA
131 TGAAGATACAAGTCTTATCTTCCTGAAGTTGCAAGAAGCAGACTGAG
* *
45680624 AATCACAGATCTTATCTCCATGTATCGGCTATGGAGC
1 AATTACAGATCTTATCTCCATGTATCGGCTATAGAGC
45680661 GGACTTTAGC
Statistics
Matches: 362, Mismatches: 28, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
176 55 0.15
177 307 0.85
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (177 bp):
AATTACAGATCTTATCTCCATGTATCGGCTATAGAGCAGATCGAAATTGGCGGGTCTTATCTCTA
TGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGT
TGAAGATACAAGTCTTATCTTCCTGAAGTTGCAAGAAGCAGACTGAG
Found at i:45680623 original size:42 final size:45
Alignment explanation
Indices: 45680547--45680641 Score: 110
Period size: 43 Copynumber: 2.2 Consensus size: 45
45680537 AGCCACCAGC
* *
45680547 CTTATCTCTCTAATGTAGCAAGAGAGCAGGCTGAAGAT-ACA-AGT
1 CTTATCTCTCTAATGTAGCAAGAGAGCAGACTGAAAATCACAGA-T
*
45680591 CTTATCT-TCTGAA-GTTGCAAGA-AGCAGACTGAAAATCACAGAT
1 CTTATCTCTCT-AATGTAGCAAGAGAGCAGACTGAAAATCACAGAT
45680634 CTTATCTC
1 CTTATCTC
45680642 CATGTATCGG
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
42 12 0.27
43 22 0.50
44 10 0.23
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.27
Consensus pattern (45 bp):
CTTATCTCTCTAATGTAGCAAGAGAGCAGACTGAAAATCACAGAT
Found at i:45680652 original size:131 final size:132
Alignment explanation
Indices: 45680502--45680796 Score: 439
Period size: 131 Copynumber: 2.2 Consensus size: 132
45680492 AATTGGCGGG
*
45680502 TCTTATCTCTATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTAATGTAGCA
1 TCTTATCTCTATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGCA
*
45680567 AGAGAGCAGGCTGAAGATACAAGTCTTATCTT-CTGAAGTTGCAAGAAGCAGACTGAAAATCACA
66 AGAGAGAAGGCTGAAGATACAAGTCTTATCTTCCTGAAGTTGCAAGAAGCAGACTGAAAATCACA
45680631 GA
131 GA
* * * * * *
45680633 TCTTATCTCCATGTATCGGCTATGGAGCGGACTTTAGCCACCAGCCTTATCTTTCTGAGGTAGTA
1 TCTTATCTCTATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGCA
* * * * *
45680698 AGAGAGAAGGTTGAAGATACAGGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTATA
66 AGAGAGAAGGCTGAAGATACAAGTCTTATCTTCCTGAAGTTGCAAGAAGCAGACTGAAAATCACA
45680763 GA
131 GA
** *
45680765 AATTATCTCTATGTATCGACTATGGAGCAGAT
1 TCTTATCTCTATGTATCGGCTATGGAGCAGAT
45680797 CAAAAATGGC
Statistics
Matches: 144, Mismatches: 19, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
131 87 0.60
132 57 0.40
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (132 bp):
TCTTATCTCTATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGCA
AGAGAGAAGGCTGAAGATACAAGTCTTATCTTCCTGAAGTTGCAAGAAGCAGACTGAAAATCACA
GA
Found at i:45680692 original size:308 final size:310
Alignment explanation
Indices: 45680325--45680948 Score: 869
Period size: 308 Copynumber: 2.0 Consensus size: 310
45680315 AATTGGCGGG
* * *
45680325 TCTTATCTCTATGTATCGACTATGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTGAGGTAGCA
1 TCTTATCTCCATGTATCGACTATGGAGCAGACTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
* *
45680390 AGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTAAAGTTGCAGGAAGCAGACTGAGAATTACA
66 AGAGAGAAGGTTGAAGATACAAGTCTTATCTTCCTAAAGTTGCAGGAAGCAGACTGAAAATTACA
* * * ** * *
45680455 -AATCTTATCTCCATGTATCGGCTATAAAGCAGATCAAAATTGGCGGGTCTTATCTCTATGTATC
131 GAA-ATTATCTCCATGTATCGACTATAAAGCAGATCAAAAATGGCAAGTCTTACCTCCATGTATC
* * * * * *
45680519 GGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTAATGTAGCAAGAGAGCAGGCTGAAGA
195 GGCAATGGAGCAGATTTTAGCCACAAGCCTTACCTCTCTAAGGTAGCAAGAGAGCAAGCTGAAAA
*
45680584 TACAAGTCTTATCTT-CTGAA-GTTGCAA-GAAGCAGACTGAAAATCACAGA
260 TACAAGTCTTATCTTCCT-AAGGTAGCAAGGAAGCAGACTGAAAATCACAGA
* * * *
45680633 TCTTATCTCCATGTATCGGCTATGGAGCGGACTTTAGCCACCAGCCTTATCTTTCTGAGGTAGTA
1 TCTTATCTCCATGTATCGACTATGGAGCAGACTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
* * *
45680698 AGAGAGAAGGTTGAAGATACAGGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTATA
66 AGAGAGAAGGTTGAAGATACAAGTCTTATCTTCCTAAAGTTGCAGGAAGCAGACTGAAAATTACA
* **
45680763 GAAATTATCTCTATGTATCGACTATGGAGCAGATCAAAAATGGCAAGTCTTACCTCCATGTATCG
131 GAAATTATCTCCATGTATCGACTATAAAGCAGATCAAAAATGGCAAGTCTTACCTCCATGTATCG
* * *
45680828 GCAATGGAGTAGATTTTAGCCACAAGCCTTACCTCTCTGAGGTAGCAAGAGAGCAAGTTGAAAAT
196 GCAATGGAGCAGATTTTAGCCACAAGCCTTACCTCTCTAAGGTAGCAAGAGAGCAAGCTGAAAAT
* * * **
45680893 ACAAGTCTTATTTTCCTAAGGTAGCAAGGAAGTAGACTGAAGATTGCAGA
261 ACAAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAAATCACAGA
45680943 TCTTAT
1 TCTTAT
45680949 TTTCCTAAGC
Statistics
Matches: 275, Mismatches: 37, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
308 241 0.88
309 10 0.04
310 24 0.09
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (310 bp):
TCTTATCTCCATGTATCGACTATGGAGCAGACTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
AGAGAGAAGGTTGAAGATACAAGTCTTATCTTCCTAAAGTTGCAGGAAGCAGACTGAAAATTACA
GAAATTATCTCCATGTATCGACTATAAAGCAGATCAAAAATGGCAAGTCTTACCTCCATGTATCG
GCAATGGAGCAGATTTTAGCCACAAGCCTTACCTCTCTAAGGTAGCAAGAGAGCAAGCTGAAAAT
ACAAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAAATCACAGA
Found at i:45682725 original size:31 final size:31
Alignment explanation
Indices: 45682687--45682745 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
45682677 TTTTATGTAA
*
45682687 ATATTTTCTTCTAAACTTATT-ATATATATAT
1 ATATTTTCTT-TAAAATTATTCATATATATAT
45682718 ATATTTTCTTTAAAATTATTCATATATA
1 ATATTTTCTTTAAAATTATTCATATATA
45682746 ATTTGGCTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 9 0.35
31 17 0.65
ACGTcount: A:0.37, C:0.08, G:0.00, T:0.54
Consensus pattern (31 bp):
ATATTTTCTTTAAAATTATTCATATATATAT
Found at i:45682735 original size:27 final size:29
Alignment explanation
Indices: 45682687--45682749 Score: 71
Period size: 27 Copynumber: 2.2 Consensus size: 29
45682677 TTTTATGTAA
45682687 ATATTTTCTTCTAAACTTATTATAT-ATATAT
1 ATATTTTCTTCTAAA--TATTAT-TCATATAT
45682718 ATATTTTCTT-TAAA-ATTATTCATATAT
1 ATATTTTCTTCTAAATATTATTCATATAT
45682745 A-ATTT
1 ATATTT
45682750 GGCTTTCTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
26 5 0.16
27 12 0.39
30 4 0.13
31 10 0.32
ACGTcount: A:0.37, C:0.08, G:0.00, T:0.56
Consensus pattern (29 bp):
ATATTTTCTTCTAAATATTATTCATATAT
Found at i:45687623 original size:22 final size:21
Alignment explanation
Indices: 45687595--45687653 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 21
45687585 AATATTTTAA
*
45687595 ATATAAATATTTATTTTATTTT
1 ATATAAATATTT-GTTTATTTT
45687617 ATATAAATATTTGTTTATTTTT
1 ATATAAATATTTGTTTA-TTTT
* *
45687639 ATTTATATATTTGTT
1 ATATAAATATTTGTT
45687654 CGTTAACGTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
21 4 0.12
22 29 0.88
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.64
Consensus pattern (21 bp):
ATATAAATATTTGTTTATTTT
Found at i:45687795 original size:29 final size:29
Alignment explanation
Indices: 45687762--45687819 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
45687752 GTGAGTATGT
45687762 AAGCCACTTGATATTGTCTTGGAACATAG
1 AAGCCACTTGATATTGTCTTGGAACATAG
45687791 AAGCCACTTGATATTGTCTTGGAACATAG
1 AAGCCACTTGATATTGTCTTGGAACATAG
45687820 TCAACTACCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (29 bp):
AAGCCACTTGATATTGTCTTGGAACATAG
Found at i:45692375 original size:17 final size:15
Alignment explanation
Indices: 45692344--45692377 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 15
45692334 TTTAATATTT
45692344 TAAAATTATTTTTTA
1 TAAAATTATTTTTTA
45692359 TAAATATTATATTTTTA
1 TAAA-ATTAT-TTTTTA
45692376 TA
1 TA
45692378 GGTTATAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 5 0.29
17 8 0.47
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
TAAAATTATTTTTTA
Found at i:45693035 original size:9 final size:9
Alignment explanation
Indices: 45693021--45693081 Score: 95
Period size: 9 Copynumber: 6.8 Consensus size: 9
45693011 TTTGGTTAAA
45693021 AATTACCCG
1 AATTACCCG
45693030 AATTACCCG
1 AATTACCCG
45693039 AATTACCCG
1 AATTACCCG
*
45693048 AATTAACCG
1 AATTACCCG
*
45693057 AATTAACCG
1 AATTACCCG
*
45693066 AATTAACCG
1 AATTACCCG
45693075 AATTACC
1 AATTACC
45693082 GAAAAATACC
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 50 1.00
ACGTcount: A:0.39, C:0.28, G:0.10, T:0.23
Consensus pattern (9 bp):
AATTACCCG
Found at i:45694112 original size:17 final size:17
Alignment explanation
Indices: 45694087--45694119 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
45694077 TTTCTCATTC
*
45694087 TTCCGTTCTTCATCCAG
1 TTCCCTTCTTCATCCAG
45694104 TTCCCTTCTTCATCCA
1 TTCCCTTCTTCATCCA
45694120 TTTTGTAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.12, C:0.39, G:0.06, T:0.42
Consensus pattern (17 bp):
TTCCCTTCTTCATCCAG
Found at i:45696163 original size:20 final size:20
Alignment explanation
Indices: 45696118--45696163 Score: 76
Period size: 19 Copynumber: 2.4 Consensus size: 20
45696108 CATCCAAACA
45696118 CCAGAAAAATAAATCATTTT
1 CCAGAAAAATAAATCATTTT
*
45696138 -CAGAAAAGTAAATCATTTT
1 CCAGAAAAATAAATCATTTT
45696157 CCAGAAA
1 CCAGAAA
45696164 TCATTTTTCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 18 0.75
20 6 0.25
ACGTcount: A:0.50, C:0.15, G:0.09, T:0.26
Consensus pattern (20 bp):
CCAGAAAAATAAATCATTTT
Found at i:45697363 original size:15 final size:15
Alignment explanation
Indices: 45697343--45697389 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
45697333 TTCTCTCATG
45697343 TTATATTTTAGTTAT
1 TTATATTTTAGTTAT
* **
45697358 TTATATTTGAAATA-
1 TTATATTTTAGTTAT
*
45697372 TTATATTTTAGTCAT
1 TTATATTTTAGTTAT
45697387 TTA
1 TTA
45697390 CGTTATTGTG
Statistics
Matches: 24, Mismatches: 7, Indels: 2
0.73 0.21 0.06
Matches are distributed among these distances:
14 10 0.42
15 14 0.58
ACGTcount: A:0.32, C:0.02, G:0.06, T:0.60
Consensus pattern (15 bp):
TTATATTTTAGTTAT
Found at i:45701949 original size:21 final size:21
Alignment explanation
Indices: 45701902--45701949 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
45701892 TAATTATTTG
45701902 AAATAATT-AATTATATTATAA
1 AAAT-ATTAAATTATATTATAA
45701923 AAATATTAAATTA-ATTAATAA
1 AAATATTAAATTATATT-ATAA
*
45701944 CAATAT
1 AAATAT
45701950 GAGAATATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 6 0.25
21 18 0.75
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (21 bp):
AAATATTAAATTATATTATAA
Found at i:45704836 original size:6 final size:6
Alignment explanation
Indices: 45704825--45704859 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
45704815 GAATCCGTAA
45704825 AAATAT AAATAT AAATAT AAATAT AAATAT AAATA
1 AAATAT AAATAT AAATAT AAATAT AAATAT AAATA
45704860 AAGACATTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (6 bp):
AAATAT
Found at i:45709846 original size:13 final size:14
Alignment explanation
Indices: 45709817--45709849 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
45709807 AATCTTATGT
*
45709817 GAAATAATTTAAAA
1 GAAAAAATTTAAAA
45709831 GAAAAAATTT-AAA
1 GAAAAAATTTAAAA
45709844 GAAAAA
1 GAAAAA
45709850 TGAATATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 9 0.50
14 9 0.50
ACGTcount: A:0.70, C:0.00, G:0.09, T:0.21
Consensus pattern (14 bp):
GAAAAAATTTAAAA
Found at i:45717334 original size:19 final size:19
Alignment explanation
Indices: 45717310--45717348 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
45717300 TATAGAGACA
45717310 TAACTTTCAAGGTGTATTT
1 TAACTTTCAAGGTGTATTT
*
45717329 TAACTTTCAAGTTGTATTT
1 TAACTTTCAAGGTGTATTT
45717348 T
1 T
45717349 CTGAATAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.10, G:0.13, T:0.51
Consensus pattern (19 bp):
TAACTTTCAAGGTGTATTT
Found at i:45718810 original size:29 final size:29
Alignment explanation
Indices: 45718744--45718833 Score: 103
Period size: 29 Copynumber: 3.2 Consensus size: 29
45718734 CACATACCTG
* * * *
45718744 TATATGGTCCACTAGACCCAATT-ATATT
1 TATATGGCCCATTAGGCCCAATTCACATT
* *
45718772 CACATGGCCCATTAGGCCCAATTCACATT
1 TATATGGCCCATTAGGCCCAATTCACATT
*
45718801 TATATGGCCCATTAGGCCCAAATCACA-T
1 TATATGGCCCATTAGGCCCAATTCACATT
45718829 TATAT
1 TATAT
45718834 TCATGCTCAC
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
28 24 0.46
29 28 0.54
ACGTcount: A:0.31, C:0.27, G:0.12, T:0.30
Consensus pattern (29 bp):
TATATGGCCCATTAGGCCCAATTCACATT
Found at i:45739305 original size:28 final size:28
Alignment explanation
Indices: 45739265--45739331 Score: 116
Period size: 28 Copynumber: 2.4 Consensus size: 28
45739255 CGTGTCCTTG
45739265 GCCCGTGTCCTTCACACGACCATGACAC
1 GCCCGTGTCCTTCACACGACCATGACAC
*
45739293 GCCCGTGTCCTTCACACGGCCATGACAC
1 GCCCGTGTCCTTCACACGACCATGACAC
*
45739321 ACCCGTGTCCT
1 GCCCGTGTCCT
45739332 AGCTTATGTC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.18, C:0.43, G:0.19, T:0.19
Consensus pattern (28 bp):
GCCCGTGTCCTTCACACGACCATGACAC
Found at i:45740428 original size:46 final size:45
Alignment explanation
Indices: 45740294--45740513 Score: 137
Period size: 46 Copynumber: 4.8 Consensus size: 45
45740284 GGGGTCAGGT
* *
45740294 GCCGATGCCATGTCCCAGACATGGTCTTACACT-GACA-CATCTTGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAG-CATCGTCTCG-AG
** * *
45740340 TTCGATGCATGTCCCAGACATGTCTCACACTGGCTTAT-GTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC--ATCGTCTCGAG
* * *
45740386 GCCGATGCATGTCCCAGACAAGTCTTACACTAGCACTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCA-TCGTCTCGAG
* * * * * *
45740432 GTCGATGCCATGTCCCAGAC-TCGGTCTTACACTGGCTTTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT--GTCTTACACTAGC-ATCGT-CTCGAG
* *
45740480 GCTGATGCATGTCCCAAACATGTCTTACACTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
45740514 TCACACAAGT
Statistics
Matches: 136, Mismatches: 25, Indels: 26
0.73 0.13 0.14
Matches are distributed among these distances:
44 11 0.08
45 17 0.12
46 63 0.46
47 23 0.17
48 21 0.15
49 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCATCGTCTCGAG
Found at i:45748119 original size:40 final size:40
Alignment explanation
Indices: 45748073--45748297 Score: 281
Period size: 40 Copynumber: 5.6 Consensus size: 40
45748063 CTTGCGCAAG
* * *
45748073 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
45748113 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
45748153 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
45748193 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * * *
45748233 GCCTTCGGATCTTCGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
45748274 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
45748298 CATTCGAATA
Statistics
Matches: 157, Mismatches: 25, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 128 0.82
41 28 0.18
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:45748168 original size:80 final size:80
Alignment explanation
Indices: 45748037--45748297 Score: 294
Period size: 80 Copynumber: 3.3 Consensus size: 80
45748027 CTCAAGTAAT
* * * * * * * *
45748037 CTTCGGGATTTAG-CCGGATATAACTACTTGCGC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
45748100 CACTAGCATAAATGC
66 CACTAGCACAAATGC
* * *
45748115 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
45748179 TCGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * * * *
45748195 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTCGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
45748260 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
45748276 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
45748298 CATTCGAATA
Statistics
Matches: 153, Mismatches: 25, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
78 12 0.08
79 15 0.10
80 93 0.61
81 33 0.22
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:45756256 original size:40 final size:40
Alignment explanation
Indices: 45756210--45756434 Score: 254
Period size: 40 Copynumber: 5.6 Consensus size: 40
45756200 CTTGCGCAAG
* * *
45756210 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
45756250 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * * *
45756290 GCCTTCGGGTTTTAACCCAGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
45756330 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * * *
45756370 GCCTTCGGATCTTCGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
* *
45756411 GCCTTCGGGACTTAGCTCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
45756435 CATTCGAATA
Statistics
Matches: 152, Mismatches: 30, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
39 1 0.01
40 124 0.82
41 27 0.18
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:45758525 original size:44 final size:45
Alignment explanation
Indices: 45758451--45758636 Score: 193
Period size: 44 Copynumber: 4.2 Consensus size: 45
45758441 TATGTGGTTG
*
45758451 AAGCCACCAA-ATTCGTAGACAAGCTGCCATGTAGGTTATGGACA
1 AAGCCACCAATATTCGTAGACAAGCTGCCATGTAGGTTGTGGACA
* * * * *
45758495 AAGCCAACAATATTCGTAGAC-AGTTTCCATGTAAGTTGTGGATA
1 AAGCCACCAATATTCGTAGACAAGCTGCCATGTAGGTTGTGGACA
* * * * *
45758539 AA-CCACCAATATTTGAAGACAAGCTACCATGTAGGTTGCGGATA
1 AAGCCACCAATATTCGTAGACAAGCTGCCATGTAGGTTGTGGACA
* * * * *
45758583 AA-CAACCAAT-TTTGCAGACAAGTTGCCATGTAGGTTGTGGACG
1 AAGCCACCAATATTCGTAGACAAGCTGCCATGTAGGTTGTGGACA
45758626 AAGCCACCAAT
1 AAGCCACCAAT
45758637 TCTTCCTCTT
Statistics
Matches: 118, Mismatches: 21, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
43 44 0.37
44 64 0.54
45 10 0.08
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (45 bp):
AAGCCACCAATATTCGTAGACAAGCTGCCATGTAGGTTGTGGACA
Found at i:45759826 original size:13 final size:13
Alignment explanation
Indices: 45759788--45759834 Score: 58
Period size: 14 Copynumber: 3.5 Consensus size: 13
45759778 TGTCGATTTC
*
45759788 TTCTTCCTCTCTTT
1 TTCTTCCT-TTTTT
*
45759802 TTCCTCCATTTTTT
1 TTCTTCC-TTTTTT
45759816 TTCTTCCTTTTTT
1 TTCTTCCTTTTTT
45759829 TTCTTC
1 TTCTTC
45759835 TAGCCGAAAC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
13 12 0.41
14 16 0.55
15 1 0.03
ACGTcount: A:0.02, C:0.30, G:0.00, T:0.68
Consensus pattern (13 bp):
TTCTTCCTTTTTT
Found at i:45767026 original size:28 final size:28
Alignment explanation
Indices: 45766989--45767095 Score: 160
Period size: 28 Copynumber: 3.8 Consensus size: 28
45766979 GCAATCAAAT
*
45766989 ATGGTACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
45767017 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* *
45767045 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* * *
45767073 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTACGAAATAT
45767096 CGAATGATTC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 73 1.00
ACGTcount: A:0.35, C:0.10, G:0.25, T:0.30
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAAATATTGAGA
Done.