Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 143 of 356
Found at i:46028493 original size:14 final size:16
Alignment explanation
Indices: 46028453--46028496 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 16
46028443 TTTTCAACAT
*
46028453 AAATTAAACTTAATTCA
1 AAATTAAA-TAAATTCA
46028470 AAATTAAATAAATT-A
1 AAATTAAATAAATTCA
46028485 AAA-TAAATAAAT
1 AAATTAAATAAAT
46028497 ATGGATTGCC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 9 0.35
15 4 0.15
16 5 0.19
17 8 0.31
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.32
Consensus pattern (16 bp):
AAATTAAATAAATTCA
Found at i:46051344 original size:17 final size:17
Alignment explanation
Indices: 46051322--46051359 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 17
46051312 CTATCAAAAT
*
46051322 ATTTTATAGTTTACTTC
1 ATTTTATAGCTTACTTC
46051339 A-TTT-TAGCTTACTTC
1 ATTTTATAGCTTACTTC
46051354 ATTTTA
1 ATTTTA
46051360 CTTTCCATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 4
0.78 0.04 0.17
Matches are distributed among these distances:
15 11 0.61
16 6 0.33
17 1 0.06
ACGTcount: A:0.24, C:0.13, G:0.05, T:0.58
Consensus pattern (17 bp):
ATTTTATAGCTTACTTC
Found at i:46052839 original size:42 final size:43
Alignment explanation
Indices: 46052775--46052856 Score: 105
Period size: 42 Copynumber: 1.9 Consensus size: 43
46052765 TTGAGATTTA
* *
46052775 TGTGTAAGACCATGTTTGGGACA-TCGACATC-ATATTTGACTT
1 TGTGTAAGACCATGTCTAGGACAGT-GACATCGATATTTGACTT
* *
46052817 TGTGTAAGACCCTGTCTAGGACAGTGGCATCGATATTTGA
1 TGTGTAAGACCATGTCTAGGACAGTGACATCGATATTTGA
46052857 TTACATATAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
42 25 0.74
43 9 0.26
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (43 bp):
TGTGTAAGACCATGTCTAGGACAGTGACATCGATATTTGACTT
Found at i:46057556 original size:21 final size:22
Alignment explanation
Indices: 46057532--46057577 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
46057522 TATCCCCACA
* *
46057532 TGGTGTGTTGGTTGG-TATGGG
1 TGGTGTGCTGGCTGGATATGGG
*
46057553 TGGTGTGCTGGCTGGATTTGGG
1 TGGTGTGCTGGCTGGATATGGG
46057575 TGG
1 TGG
46057578 GATACATTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 13 0.62
22 8 0.38
ACGTcount: A:0.04, C:0.04, G:0.52, T:0.39
Consensus pattern (22 bp):
TGGTGTGCTGGCTGGATATGGG
Found at i:46061353 original size:29 final size:29
Alignment explanation
Indices: 46061311--46061396 Score: 106
Period size: 29 Copynumber: 3.0 Consensus size: 29
46061301 ACATGGCTTG
*
46061311 GAAT-TGATTCGGG-CTAGATGGGCCATAT
1 GAATGTGATTTGGGCCTA-ATGGGCCATAT
46061339 GAATGTGATTTGGGCCTAATGGGCCATAT
1 GAATGTGATTTGGGCCTAATGGGCCATAT
* * *
46061368 AAATGAGA-TTGGGCCTAATGGGCTATAT
1 GAATGTGATTTGGGCCTAATGGGCCATAT
46061396 G
1 G
46061397 CGTGTATGTA
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
28 23 0.45
29 25 0.49
30 3 0.06
ACGTcount: A:0.27, C:0.13, G:0.31, T:0.29
Consensus pattern (29 bp):
GAATGTGATTTGGGCCTAATGGGCCATAT
Found at i:46061388 original size:28 final size:29
Alignment explanation
Indices: 46061328--46061395 Score: 102
Period size: 28 Copynumber: 2.4 Consensus size: 29
46061318 TTCGGGCTAG
* *
46061328 ATGGGCCATATGAATGTGATTTGGGCCTA
1 ATGGGCCATATAAATGAGATTTGGGCCTA
46061357 ATGGGCCATATAAATGAGA-TTGGGCCTA
1 ATGGGCCATATAAATGAGATTTGGGCCTA
*
46061385 ATGGGCTATAT
1 ATGGGCCATAT
46061396 GCGTGTATGT
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
28 19 0.53
29 17 0.47
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.29
Consensus pattern (29 bp):
ATGGGCCATATAAATGAGATTTGGGCCTA
Found at i:46067412 original size:50 final size:50
Alignment explanation
Indices: 46067234--46067821 Score: 479
Period size: 50 Copynumber: 11.6 Consensus size: 50
46067224 ATTCTGAGAA
* * **
46067234 CACATGTGCAGTACTATGTGCAGGCTACTATGTGTTTAAGACGATT-TTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTG--TATCA-GATTGTTAGGT
* * * * * *
46067286 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAT-TTCTGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGAT-TGTT-AGGT
* * *
46067337 CACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATTGTTAGGT
* * * *
46067387 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTC-GATAGCTTTA-AT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTA-TCAGATTG--TTAGGT
* * * *
46067438 CACGTGTGTAATACTAAGTGCAGGCAACTATGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATTGTTAGGT
* * * * * * *
46067488 CACATGTGTAGTACTAAGTGTAGGCTACTAAGCGTACCCA-ATAGCTTTGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTA-TCAGATTG-TTAGGT
** * * * * * * *
46067539 CATGTTTGTAATATTAAGTGTAGGCTACTACGTGTATCAAATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATTGTTAGGT
* *
46067589 CACATGTGCAGTACAAAGTGCAGGCTACTATGTGTA-CAAGATTGTTAGG-
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATC-AGATTGTTAGGT
* ** * * * * *
46067638 CTGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCTGATAGCTTCGAT
1 C-ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATTG-TTAGGT
* * * * *
46067690 CACGTGTGTAGTACTAAGTGTAGGCTACTACGTGCATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATTGTTAGGT
* * * * *
46067740 CACGTGTGTAGTACTAAGTGTAGGCTACTACGTGCATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATTGTTAGGT
* *
46067790 CACGTGTGTAGTACTAAGTGCAGGCTGCTATG
1 CACATGTGTAGTACTAAGTGCAGGCTACTATG
46067822 CATACCAGAG
Statistics
Matches: 432, Mismatches: 88, Indels: 34
0.78 0.16 0.06
Matches are distributed among these distances:
49 8 0.02
50 237 0.55
51 153 0.35
52 34 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATTGTTAGGT
Found at i:46067420 original size:101 final size:100
Alignment explanation
Indices: 46067276--46067827 Score: 552
Period size: 101 Copynumber: 5.5 Consensus size: 100
46067266 TGTTTAAGAC
* *
46067276 GATT-TTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATATTTCTGATCAC
1 GATTGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATACTT-TGATCAC
46067340 GTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCA
65 GTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCA
* * *
46067376 GATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCGATAGCTTTAATCAC
1 GATTGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATA-CTTTGATCAC
* * * * *
46067441 GTGTGTAATACTAAGTGCAGGCAACTATGTGTACCA
65 GTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCA
* * * *
46067477 GATTGTTAGGTCACATGTGTAGTACTAAGTGTAGGCTACTAAGCGTACCCAATAGCTTTGATCAT
1 GATTGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATA-CTTTGATCAC
* * *
46067542 GTTTGTAATATTAAGTGTAGGCTACTACGTGTATCA
65 GTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCA
* * * * * ** ** * *
46067578 AATGGTTAGGTCACATGTGCAGTACAAAGTGCAGGCTACTATGTGTACAAGATTGTTAGGCTGCA
1 GATTGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATACTT-TGAT-CA
* * ** * *
46067643 --TGTGTAGTACTAAGTGCAGGCTACTATGCATACCT
64 CGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCA
* * * * * * * * * * ** * *
46067678 GATAGCTTCGATCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGCATCAGATGGTTAGGTCAC
1 GATTG-TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATACTTTGATCAC
*
46067743 GTGTGTAGTACTAAGTGTAGGCTACTACGTGCATCA
65 GTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCA
* * * *
46067779 GATGGTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTGCTATGCATACC
1 GATTGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
46067828 AGAGAGCTTC
Statistics
Matches: 369, Mismatches: 76, Indels: 14
0.80 0.17 0.03
Matches are distributed among these distances:
99 2 0.01
100 72 0.20
101 291 0.79
102 4 0.01
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (100 bp):
GATTGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATACTTTGATCACG
TGTGTAGTACTAAGTGTAGGCTACTACGTGTATCA
Found at i:46067836 original size:151 final size:149
Alignment explanation
Indices: 46067280--46067838 Score: 529
Period size: 151 Copynumber: 3.7 Consensus size: 149
46067270 TAAGACGATT
* * * * * *
46067280 TTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAT-TTCTGATCACGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CAGAT-TGTT-AGGTCAC-TGT
* * ** * * * * * * * *
46067344 GTAGTACTAAGTGTAGGCTACTACGTGTATCAGATTG-TTAGGTCGCATGTGTAGTACTAAGTGC
62 GTAGTACTAAGTGCAGGCTACTATGCATACCAGATAGCTTCGATCACGTGTGTAATACTAAGTGT
* * *
46067408 AGGCTACTATGCGTAC-TC-GATAGCT
127 AGGCTACTA--CGTGCATCAAAT-G-G
* * *
46067433 TTA-ATCACGTGTGTAATACTAAGTGCAGGCAACTATGTGTACCAGATTGTTAGGTCACATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CAGATTGTTAGGTCAC-TGTGT
* * * * * * *
46067497 AGTACTAAGTGTAGGCTACTAAGCGTACCCA-ATAGCTTTGATCATGTTTGTAATATTAAGTGTA
64 AGTACTAAGTGCAGGCTACTATGCATA-CCAGATAGCTTCGATCACGTGTGTAATACTAAGTGTA
*
46067561 GGCTACTACGTGTATCAAATGG
128 GGCTACTACGTGCATCAAATGG
* * *
46067583 TTAGGTCACATGTGCAGTACAAAGTGCAGGCTACTATGTGTACAAGATTGTTAGGCTGCA-TGTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTAC-AGATTGTTAGG-T-CACTGTG
* *
46067647 TAGTACTAAGTGCAGGCTACTATGCATACCTGATAGCTTCGATCACGTGTGTAGTACTAAGTGTA
63 TAGTACTAAGTGCAGGCTACTATGCATACCAGATAGCTTCGATCACGTGTGTAATACTAAGTGTA
*
46067712 GGCTACTACGTGCATCAGATGG
128 GGCTACTACGTGCATCAAATGG
* * * *
46067734 TTAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGCATCAGATGGTTAGGTCACGTGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CAGATTGTTAGGTCAC-TGTGT
* *
46067799 AGTACTAAGTGCAGGCTGCTATGCATACCAGAGAGCTTCG
64 AGTACTAAGTGCAGGCTACTATGCATACCAGATAGCTTCG
46067839 GTTACAAGGG
Statistics
Matches: 339, Mismatches: 54, Indels: 28
0.81 0.13 0.07
Matches are distributed among these distances:
149 2 0.01
150 10 0.03
151 250 0.74
152 72 0.21
153 5 0.01
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (149 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACAGATTGTTAGGTCACTGTGTAG
TACTAAGTGCAGGCTACTATGCATACCAGATAGCTTCGATCACGTGTGTAATACTAAGTGTAGGC
TACTACGTGCATCAAATGG
Found at i:46069563 original size:73 final size:73
Alignment explanation
Indices: 46069460--46069609 Score: 228
Period size: 73 Copynumber: 2.1 Consensus size: 73
46069450 ATAATTAAGG
* * ** *
46069460 ATGTTGAATGCTTCTGGAACCATGTTTGTGTGTGTGTATGTAAAGAGTGACAAAAAGGCTTGAAA
1 ATGTTGAATGCCTCTAGAACCATGTTTGTGTGTGTAAACGTAAAGAGTGACAAAAAGGCTTGAAA
46069525 AATAGCCT
66 AATAGCCT
* * *
46069533 ATGTTGAATGCCTCTAGATCCATGTTTGTGTGTGTAAACGTAAAGGGTGACAAAAAGGCTTGGAA
1 ATGTTGAATGCCTCTAGAACCATGTTTGTGTGTGTAAACGTAAAGAGTGACAAAAAGGCTTGAAA
46069598 AATAGCCT
66 AATAGCCT
46069606 ATGT
1 ATGT
46069610 GCTGGCCATA
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
73 69 1.00
ACGTcount: A:0.31, C:0.12, G:0.26, T:0.31
Consensus pattern (73 bp):
ATGTTGAATGCCTCTAGAACCATGTTTGTGTGTGTAAACGTAAAGAGTGACAAAAAGGCTTGAAA
AATAGCCT
Found at i:46073738 original size:40 final size:40
Alignment explanation
Indices: 46073683--46073863 Score: 267
Period size: 40 Copynumber: 4.5 Consensus size: 40
46073673 TATTCGGATG
* *
46073683 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
46073723 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
**
46073763 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
46073803 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
46073843 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
46073864 ATACTTGGGT
Statistics
Matches: 128, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 13 0.10
40 113 0.88
41 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:46086855 original size:50 final size:50
Alignment explanation
Indices: 46086791--46087232 Score: 343
Period size: 50 Copynumber: 8.8 Consensus size: 50
46086781 ATAGCTTTGA
* * * *
46086791 TCACGTGTGTAGTACTACGTGCAAGCTACTACGTGTATCAAATGGTTAGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATGGTTAGG
** * * * *
46086841 TCATTTGTGTAGTACTAAGTGCAGGATACTATGTGTACCAGATTGTTAGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATGGTTAGG
** * * * * ** ** * *
46086891 TCGTATCTATAGTACTAAGTGCAAGCTACTATGCATACCCGATAGCTTTGAG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAAT-GGTTAG-G
** * * * *
46086943 -CATGTGTGTAGTACTAAGTGCAGTCTATTACATGTATCAAATGGTTAGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATGGTTAGG
* * * *
46086992 TCACATGTGTAGTACTAACTGCGGGCTACTACGTGTACCATATTGTTAGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATGGTTAGG
* * * *
46087042 TCACATGTGTAGTACTAAGTGCAGGCTACT--GTGCATACTC-GATAGCTTCGA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTG--TAC-CAAAT-GGTTAGG
* * * *
46087093 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCACATGGTTAGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATGGTTAGG
* * * * * * *
46087143 TCACGTGTGTAGTACAAAGTGTAGGCAACTACATGTACCAAATTGTTAAG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATGGTTAGG
* * * *
46087193 TCTCATGTGTAGTACTAAGTGCAAGCTACTATGCGTACCA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA
46087233 GAGAGCTTCG
Statistics
Matches: 303, Mismatches: 79, Indels: 20
0.75 0.20 0.05
Matches are distributed among these distances:
48 3 0.01
49 1 0.00
50 228 0.75
51 67 0.22
52 1 0.00
53 3 0.01
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (50 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATGGTTAGG
Found at i:46087055 original size:151 final size:150
Alignment explanation
Indices: 46086775--46087240 Score: 599
Period size: 151 Copynumber: 3.1 Consensus size: 150
46086765 ATAAGTTACG
* *
46086775 TACCTGATAGCTTTGATCACGTGTGTAGTACTACGTGCAAGCTACTACGTGTATCAAATGGTTAG
1 TACCCGATAGCTTTGATCACGTGTGTAGTACTAAGTGC-AGCTACTACGTGTATCAAATGGTTAG
** * * * ** * *
46086840 GTCATTTGTGTAGTACTAAGTGCAGGATACTATGTGTACCAGATTGTTAGGTCGTATCTATAGTA
65 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGTTAGGTCACATGTGTAGTA
46086905 CTAAGTGCAAGCTACTATGCA
130 CTAAGTGCAAGCTACTATGCA
* * * *
46086926 TACCCGATAGCTTTGAGCATGTGTGTAGTACTAAGTGCAGTCTATTACATGTATCAAATGGTTAG
1 TACCCGATAGCTTTGATCACGTGTGTAGTACTAAGTGCAG-CTACTACGTGTATCAAATGGTTAG
* * *
46086991 GTCACATGTGTAGTACTAACTGCGGGCTACTACGTGTACCATATTGTTAGGTCACATGTGTAGTA
65 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGTTAGGTCACATGTGTAGTA
* *
46087056 CTAAGTGCAGGCTACTGTGCA
130 CTAAGTGCAAGCTACTATGCA
* * * *
46087077 TACTCGATAGCTTCGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCACATGGTTAG
1 TACCCGATAGCTTTGATCACGTGTGTAGTACTAAGTGCA-GCTACTACGTGTATCAAATGGTTAG
* * * * * * *
46087142 GTCACGTGTGTAGTACAAAGTGTAGGCAACTACATGTACCAAATTGTTAAGTCTCATGTGTAGTA
65 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGTTAGGTCACATGTGTAGTA
*
46087207 CTAAGTGCAAGCTACTATGCG
130 CTAAGTGCAAGCTACTATGCA
* *
46087228 TACCAGAGAGCTT
1 TACCCGATAGCTT
46087241 CGGTTACAAG
Statistics
Matches: 270, Mismatches: 43, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
150 2 0.01
151 267 0.99
152 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.32
Consensus pattern (150 bp):
TACCCGATAGCTTTGATCACGTGTGTAGTACTAAGTGCAGCTACTACGTGTATCAAATGGTTAGG
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGTTAGGTCACATGTGTAGTAC
TAAGTGCAAGCTACTATGCA
Found at i:46088417 original size:43 final size:43
Alignment explanation
Indices: 46088263--46088420 Score: 130
Period size: 43 Copynumber: 3.7 Consensus size: 43
46088253 TGTGTTATCT
* * *
46088263 TGTAAGACTATGTCTGGGACGTTGGCATCGAT-TTGTGATTTACG
1 TGTAAGACCACGTCTGGGACGTTGGCATTGATATT-TGA-TTACG
* * * *
46088307 TGTAAGACCATGTCTGGGACATCGGCATCT-ATA--TGATTTCG
1 TGTAAGACCACGTCTGGGACGTTGGCAT-TGATATTTGATTACG
* * *
46088348 TGTAAAACC-CTATCTGGGACAG-TGGCATTGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATTGATATTTGATTACG
*
46088391 TGTAAGACCACGTCTAGGACGTTGGCATTG
1 TGTAAGACCACGTCTGGGACGTTGGCATTG
46088421 TACGAGCTTA
Statistics
Matches: 90, Mismatches: 15, Indels: 19
0.73 0.12 0.15
Matches are distributed among these distances:
40 1 0.01
41 28 0.31
42 4 0.04
43 29 0.32
44 28 0.31
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATTGATATTTGATTACG
Found at i:46088768 original size:15 final size:15
Alignment explanation
Indices: 46088750--46088783 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
46088740 TGACGATTTG
46088750 TGAAATATATGATAA
1 TGAAATATATGATAA
46088765 TGAAATATATGATAA
1 TGAAATATATGATAA
46088780 TGAA
1 TGAA
46088784 CGATGTGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.53, C:0.00, G:0.15, T:0.32
Consensus pattern (15 bp):
TGAAATATATGATAA
Found at i:46091750 original size:40 final size:40
Alignment explanation
Indices: 46091698--46091930 Score: 340
Period size: 40 Copynumber: 5.8 Consensus size: 40
46091688 ATTACCACAA
* * ** *
46091698 GCACAATTGCCTTCGGGTCTTAACCCGGGCATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* * *
46091738 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAATTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
46091778 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGG--ATATATCAACTC
*
46091820 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
46091860 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
46091900 GCACAAATGCCTTCGGGACTTAGCCCGGATA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATA
46091931 AAATACAAAT
Statistics
Matches: 175, Mismatches: 16, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
40 139 0.79
42 36 0.21
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:46091849 original size:82 final size:80
Alignment explanation
Indices: 46091698--46091930 Score: 349
Period size: 82 Copynumber: 2.9 Consensus size: 80
46091688 ATTACCACAA
* ** * *
46091698 GCACAATTGCCTTCGGGTCTTAACCCGGGCATAGCAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
* *
46091763 CGGATATATCAATTT
66 CGGATATATCAACTC
*
46091778 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTCGCACAAATGCCTGCGGGTCTTAG
1 GCACAATTGCCTTCGGGTCTTAGCCCGG--ATATATCAACTCGCACAAATGCCTTCGGGTCTTAG
46091843 CCCGGATATATCAACTC
64 CCCGGATATATCAACTC
* * *
46091860 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGACTTAGCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
46091925 CGGATA
66 CGGATA
46091931 AAATACAAAT
Statistics
Matches: 139, Mismatches: 12, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
80 68 0.49
82 71 0.51
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.24
Consensus pattern (80 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
CGGATATATCAACTC
Found at i:46091915 original size:122 final size:122
Alignment explanation
Indices: 46091698--46091930 Score: 358
Period size: 122 Copynumber: 1.9 Consensus size: 122
46091688 ATTACCACAA
* * * * *
46091698 GCACAATTGCCTTCGGGTCTTAACCCGGGCATAGCAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTGCGGGTCTTAACCCGGACATAGCAACTCGCACAAATGCCTGCGGGTCTTAGCC
* * * *
46091763 CGGATATATCAATTTGCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTC
66 CGGATATATCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATATATCAACTC
* * *
46091820 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTGCGGGTCTTAGCC
1 GCACAAATGCCTGCGGGTCTTAACCCGGACATAGCAACTCGCACAAATGCCTGCGGGTCTTAGCC
46091885 CGGATATATCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
66 CGGATATATCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
46091931 AAATACAAAT
Statistics
Matches: 99, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
122 99 1.00
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.24
Consensus pattern (122 bp):
GCACAAATGCCTGCGGGTCTTAACCCGGACATAGCAACTCGCACAAATGCCTGCGGGTCTTAGCC
CGGATATATCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATATATCAACTC
Found at i:46100251 original size:40 final size:40
Alignment explanation
Indices: 46100199--46100431 Score: 340
Period size: 40 Copynumber: 5.8 Consensus size: 40
46100189 ATTACCACAA
* * ** *
46100199 GCACAATTGCCTTCGGGTCTTAACCCGGGCATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* * *
46100239 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAATTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
46100279 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGG--ATATATCAACTC
*
46100321 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
46100361 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
46100401 GCACAAATGCCTTCGGGACTTAGCCCGGATA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATA
46100432 AAATTCAAAT
Statistics
Matches: 175, Mismatches: 16, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
40 139 0.79
42 36 0.21
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:46100350 original size:82 final size:80
Alignment explanation
Indices: 46100199--46100431 Score: 349
Period size: 82 Copynumber: 2.9 Consensus size: 80
46100189 ATTACCACAA
* ** * *
46100199 GCACAATTGCCTTCGGGTCTTAACCCGGGCATAGCAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
* *
46100264 CGGATATATCAATTT
66 CGGATATATCAACTC
*
46100279 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTCGCACAAATGCCTGCGGGTCTTAG
1 GCACAATTGCCTTCGGGTCTTAGCCCGG--ATATATCAACTCGCACAAATGCCTTCGGGTCTTAG
46100344 CCCGGATATATCAACTC
64 CCCGGATATATCAACTC
* * *
46100361 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGACTTAGCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
46100426 CGGATA
66 CGGATA
46100432 AAATTCAAAT
Statistics
Matches: 139, Mismatches: 12, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
80 68 0.49
82 71 0.51
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.24
Consensus pattern (80 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
CGGATATATCAACTC
Found at i:46100416 original size:122 final size:122
Alignment explanation
Indices: 46100199--46100431 Score: 358
Period size: 122 Copynumber: 1.9 Consensus size: 122
46100189 ATTACCACAA
* * * * *
46100199 GCACAATTGCCTTCGGGTCTTAACCCGGGCATAGCAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTGCGGGTCTTAACCCGGACATAGCAACTCGCACAAATGCCTGCGGGTCTTAGCC
* * * *
46100264 CGGATATATCAATTTGCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTC
66 CGGATATATCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATATATCAACTC
* * *
46100321 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTGCGGGTCTTAGCC
1 GCACAAATGCCTGCGGGTCTTAACCCGGACATAGCAACTCGCACAAATGCCTGCGGGTCTTAGCC
46100386 CGGATATATCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
66 CGGATATATCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
46100432 AAATTCAAAT
Statistics
Matches: 99, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
122 99 1.00
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.24
Consensus pattern (122 bp):
GCACAAATGCCTGCGGGTCTTAACCCGGACATAGCAACTCGCACAAATGCCTGCGGGTCTTAGCC
CGGATATATCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATATATCAACTC
Found at i:46106788 original size:10 final size:9
Alignment explanation
Indices: 46106759--46106784 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
46106749 GTAATTTTGT
46106759 AAAATGACA
1 AAAATGACA
46106768 AAAATGACA
1 AAAATGACA
46106777 AAAATGAC
1 AAAATGAC
46106785 CAAATTGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.65, C:0.12, G:0.12, T:0.12
Consensus pattern (9 bp):
AAAATGACA
Found at i:46107111 original size:28 final size:28
Alignment explanation
Indices: 46107079--46107151 Score: 101
Period size: 28 Copynumber: 2.6 Consensus size: 28
46107069 TAAGGTAATC
* **
46107079 AGTGTACGAAATATTGAGAATGGCACTT
1 AGTGTGCGAAATATTGAGAATGAAACTT
*
46107107 AGTGTGCGAGATATTGAGAATGAAACTT
1 AGTGTGCGAAATATTGAGAATGAAACTT
*
46107135 AGTGTGCGAAGTATTGA
1 AGTGTGCGAAATATTGA
46107152 ATGATTCAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (28 bp):
AGTGTGCGAAATATTGAGAATGAAACTT
Found at i:46109151 original size:28 final size:28
Alignment explanation
Indices: 46109120--46109302 Score: 177
Period size: 28 Copynumber: 6.5 Consensus size: 28
46109110 GTGAACATAG
*
46109120 GCACTGTGTGTGTGAGTTCCGTAACCGA
1 GCACTGTGTGTGCGAGTTCCGTAACCGA
* * * ****
46109148 GCACTGTGTGTACGAGATCGGTTGTTGA
1 GCACTGTGTGTGCGAGTTCCGTAACCGA
* *
46109176 GGTACTGTGTGTGCGAGTTCCGTAACCAA
1 -GCACTGTGTGTGCGAGTTCCGTAACCGA
*
46109205 GCACTATGTGTGCGAGTTCCGTAACCGA
1 GCACTGTGTGTGCGAGTTCCGTAACCGA
* * ****
46109233 GCACTGTGTGTGCGAGATCGGTTGTTGA
1 GCACTGTGTGTGCGAGTTCCGTAACCGA
* *
46109261 GGCACTGTGTGTGCGAGTTTCGTAACCAA
1 -GCACTGTGTGTGCGAGTTCCGTAACCGA
46109290 GCACTGTGTGTGC
1 GCACTGTGTGTGC
46109303 AAGATCGGTT
Statistics
Matches: 118, Mismatches: 35, Indels: 4
0.75 0.22 0.03
Matches are distributed among these distances:
28 79 0.67
29 39 0.33
ACGTcount: A:0.18, C:0.20, G:0.33, T:0.29
Consensus pattern (28 bp):
GCACTGTGTGTGCGAGTTCCGTAACCGA
Found at i:46109268 original size:85 final size:85
Alignment explanation
Indices: 46109120--46109302 Score: 321
Period size: 85 Copynumber: 2.2 Consensus size: 85
46109110 GTGAACATAG
* *
46109120 GCACTGTGTGTGTGAGTTCCGTAACCGAGCACTGTGTGTACGAGATCGGTTGTTGAGGTACTGTG
1 GCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTACGAGATCGGTTGTTGAGGCACTGTG
46109185 TGTGCGAGTTCCGTAACCAA
66 TGTGCGAGTTCCGTAACCAA
* *
46109205 GCACTATGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTGTG
1 GCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTACGAGATCGGTTGTTGAGGCACTGTG
*
46109270 TGTGCGAGTTTCGTAACCAA
66 TGTGCGAGTTCCGTAACCAA
46109290 GCACTGTGTGTGC
1 GCACTGTGTGTGC
46109303 AAGATCGGTT
Statistics
Matches: 92, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.18, C:0.20, G:0.33, T:0.29
Consensus pattern (85 bp):
GCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTACGAGATCGGTTGTTGAGGCACTGTG
TGTGCGAGTTCCGTAACCAA
Found at i:46109276 original size:57 final size:57
Alignment explanation
Indices: 46109205--46109332 Score: 193
Period size: 57 Copynumber: 2.2 Consensus size: 57
46109195 CCGTAACCAA
* * *
46109205 GCACTATGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTTGAG
* *
46109262 GCACTGTGTGTGCGAGTTTCGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTTGGG
1 GCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTTGAG
46109319 GCACTAAGTGTGTG
1 GCACT--GTGTGTG
46109333 AAATGAGATC
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
57 57 0.89
59 7 0.11
ACGTcount: A:0.18, C:0.18, G:0.35, T:0.29
Consensus pattern (57 bp):
GCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTTGAG
Found at i:46114226 original size:28 final size:28
Alignment explanation
Indices: 46114186--46114264 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
46114176 GCAATCAAAT
* * *
46114186 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
46114214 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
46114242 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
46114265 CGAATGATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:46116324 original size:27 final size:27
Alignment explanation
Indices: 46116226--46116404 Score: 146
Period size: 27 Copynumber: 6.5 Consensus size: 27
46116216 GTGAACATAG
*
46116226 GCACTGTGTGTGTGAGTTCCGTAACCGA
1 GCACTGTGTGTGCGAGTTCCGTAACC-A
* * ****
46116254 GCACTGTGTGT-CGAGATCGGTTGTTGA
1 GCACTGTGTGTGCGAGTTCCG-TAACCA
*
46116281 GGTACTGTGTGTGCGAGTTCCGTAACCA
1 -GCACTGTGTGTGCGAGTTCCGTAACCA
* *
46116309 GCACTATGTGTGCGAGTTCCGTAACGA
1 GCACTGTGTGTGCGAGTTCCGTAACCA
* * ****
46116336 GCACTGTGTGTGCGAGATCGGTTGTTGA
1 GCACTGTGTGTGCGAGTTCCG-TAACCA
46116364 GGCACTGTGTGTGCGAGTT-CGTAACCAA
1 -GCACTGTGTGTGCGAGTTCCGTAACC-A
46116392 GCACTGTGTGTGC
1 GCACTGTGTGTGC
46116405 AAGATCGGTT
Statistics
Matches: 116, Mismatches: 29, Indels: 13
0.73 0.18 0.08
Matches are distributed among these distances:
27 63 0.54
28 29 0.25
29 24 0.21
ACGTcount: A:0.17, C:0.20, G:0.34, T:0.29
Consensus pattern (27 bp):
GCACTGTGTGTGCGAGTTCCGTAACCA
Found at i:46116365 original size:83 final size:83
Alignment explanation
Indices: 46116226--46116404 Score: 299
Period size: 83 Copynumber: 2.2 Consensus size: 83
46116216 GTGAACATAG
* *
46116226 GCACTGTGTGTGTGAGTTCCGTAACCGAGCACTGTGTGTCGAGATCGGTTGTTGAGGTACTGTGT
1 GCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTCGAGATCGGTTGTTGAGGCACTGTGT
46116291 GTGCGAGTTCCGTAACC-A
66 GTGCGAGTT-CGTAACCAA
*
46116309 GCACTATGTGTGCGAGTTCCGTAA-CGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTGTG
1 GCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGT-CGAGATCGGTTGTTGAGGCACTGTG
46116373 TGTGCGAGTTCGTAACCAA
65 TGTGCGAGTTCGTAACCAA
46116392 GCACTGTGTGTGC
1 GCACTGTGTGTGC
46116405 AAGATCGGTT
Statistics
Matches: 90, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
82 21 0.23
83 69 0.77
ACGTcount: A:0.17, C:0.20, G:0.34, T:0.29
Consensus pattern (83 bp):
GCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTCGAGATCGGTTGTTGAGGCACTGTGT
GTGCGAGTTCGTAACCAA
Found at i:46116376 original size:56 final size:56
Alignment explanation
Indices: 46116309--46116434 Score: 182
Period size: 56 Copynumber: 2.2 Consensus size: 56
46116299 TCCGTAACCA
* * *
46116309 GCACTATGTGTGCGAGTTCCGTAA-CGAGCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGTT-CGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTTGAG
*
46116365 GCACTGTGTGTGCGAGTTCGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTTGGG
1 GCACTGTGTGTGCGAGTTCGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTTGAG
46116421 GCACTAAGTGTGTG
1 GCACT--GTGTGTG
46116435 AAATGAGATC
Statistics
Matches: 63, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
55 5 0.08
56 51 0.81
58 7 0.11
ACGTcount: A:0.18, C:0.17, G:0.36, T:0.29
Consensus pattern (56 bp):
GCACTGTGTGTGCGAGTTCGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTTGAG
Found at i:46121331 original size:27 final size:28
Alignment explanation
Indices: 46121300--46121378 Score: 79
Period size: 28 Copynumber: 2.9 Consensus size: 28
46121290 GGCAATCAAA
*
46121300 AATGGTACTCAGTGTAC-AAATATTGAG
1 AATGGCACTCAGTGTACGAAATATTGAG
* * *
46121327 AATGGCACTTAGTGTGCGAGATATTGAG
1 AATGGCACTCAGTGTACGAAATATTGAG
* * * *
46121355 AATGACACTTAGTGTGCAAAATAT
1 AATGGCACTCAGTGTACGAAATAT
46121379 CGAATGATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
27 14 0.32
28 30 0.68
ACGTcount: A:0.35, C:0.11, G:0.24, T:0.29
Consensus pattern (28 bp):
AATGGCACTCAGTGTACGAAATATTGAG
Found at i:46121378 original size:28 final size:28
Alignment explanation
Indices: 46121317--46121378 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
46121307 CTCAGTGTAC
* *
46121317 AAATATTGAGAATGGCACTTAGTGTGCG
1 AAATATTGAGAATGACACTTAGTGTGCA
*
46121345 AGATATTGAGAATGACACTTAGTGTGCA
1 AAATATTGAGAATGACACTTAGTGTGCA
46121373 AAATAT
1 AAATAT
46121379 CGAATGATTC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.37, C:0.10, G:0.24, T:0.29
Consensus pattern (28 bp):
AAATATTGAGAATGACACTTAGTGTGCA
Found at i:46123381 original size:28 final size:28
Alignment explanation
Indices: 46123350--46123532 Score: 177
Period size: 28 Copynumber: 6.5 Consensus size: 28
46123340 GTGAACATAG
*
46123350 GCACTGTGTGTGTGAGTTCCGTAACCGA
1 GCACTGTGTGTGCGAGTTCCGTAACCGA
* * * ****
46123378 GCACTGTGTGTACGAGATCGGTTGTTGA
1 GCACTGTGTGTGCGAGTTCCGTAACCGA
* *
46123406 GGTACTGTGTGTGCGAGTTCCGTAACCAA
1 -GCACTGTGTGTGCGAGTTCCGTAACCGA
*
46123435 GCACTATGTGTGCGAGTTCCGTAACCGA
1 GCACTGTGTGTGCGAGTTCCGTAACCGA
* * ****
46123463 GCACTGTGTGTGCGAGATCGGTTGTTGA
1 GCACTGTGTGTGCGAGTTCCGTAACCGA
* *
46123491 GGCACTGTGTGTGCGAGTTTCGTAACCAA
1 -GCACTGTGTGTGCGAGTTCCGTAACCGA
46123520 GCACTGTGTGTGC
1 GCACTGTGTGTGC
46123533 AAGATCGGTT
Statistics
Matches: 118, Mismatches: 35, Indels: 4
0.75 0.22 0.03
Matches are distributed among these distances:
28 79 0.67
29 39 0.33
ACGTcount: A:0.18, C:0.20, G:0.33, T:0.29
Consensus pattern (28 bp):
GCACTGTGTGTGCGAGTTCCGTAACCGA
Found at i:46123498 original size:85 final size:85
Alignment explanation
Indices: 46123350--46123532 Score: 321
Period size: 85 Copynumber: 2.2 Consensus size: 85
46123340 GTGAACATAG
* *
46123350 GCACTGTGTGTGTGAGTTCCGTAACCGAGCACTGTGTGTACGAGATCGGTTGTTGAGGTACTGTG
1 GCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTACGAGATCGGTTGTTGAGGCACTGTG
46123415 TGTGCGAGTTCCGTAACCAA
66 TGTGCGAGTTCCGTAACCAA
* *
46123435 GCACTATGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTGTG
1 GCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTACGAGATCGGTTGTTGAGGCACTGTG
*
46123500 TGTGCGAGTTTCGTAACCAA
66 TGTGCGAGTTCCGTAACCAA
46123520 GCACTGTGTGTGC
1 GCACTGTGTGTGC
46123533 AAGATCGGTT
Statistics
Matches: 92, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.18, C:0.20, G:0.33, T:0.29
Consensus pattern (85 bp):
GCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTACGAGATCGGTTGTTGAGGCACTGTG
TGTGCGAGTTCCGTAACCAA
Found at i:46123506 original size:57 final size:57
Alignment explanation
Indices: 46123435--46123562 Score: 193
Period size: 57 Copynumber: 2.2 Consensus size: 57
46123425 CCGTAACCAA
* * *
46123435 GCACTATGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTTGAG
* *
46123492 GCACTGTGTGTGCGAGTTTCGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTTGGG
1 GCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTTGAG
46123549 GCACTAAGTGTGTG
1 GCACT--GTGTGTG
46123563 AAATGAGATC
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
57 57 0.89
59 7 0.11
ACGTcount: A:0.18, C:0.18, G:0.35, T:0.29
Consensus pattern (57 bp):
GCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTTGAG
Found at i:46128464 original size:28 final size:28
Alignment explanation
Indices: 46128433--46128512 Score: 106
Period size: 28 Copynumber: 2.9 Consensus size: 28
46128423 GGGCAATCAA
* * *
46128433 AATGGTACTCAGTGTACAAAATATTGAG
1 AATGGCACTTAGTGTGCAAAATATTGAG
* *
46128461 AATGGCACTTAGTGTGCGAGATATTGAG
1 AATGGCACTTAGTGTGCAAAATATTGAG
*
46128489 AATGACACTTAGTGTGCAAAATAT
1 AATGGCACTTAGTGTGCAAAATAT
46128513 CGAATGATTC
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.36, C:0.11, G:0.24, T:0.29
Consensus pattern (28 bp):
AATGGCACTTAGTGTGCAAAATATTGAG
Found at i:46130503 original size:28 final size:28
Alignment explanation
Indices: 46130472--46130657 Score: 144
Period size: 28 Copynumber: 6.7 Consensus size: 28
46130462 GTGAACATAG
* *
46130472 GCACTGTGTGTGTGAGTTCCGTAACCGA
1 GCACTGTGTGTGCGAGATCCGTAACCGA
* ****
46130500 GCACTGTGTGTGCGAGATCGGTTGTTGA
1 GCACTGTGTGTGCGAGATCCGTAACCGA
* * *
46130528 GGACTGTGTGTGCGAGTTCCGTAACCAA
1 GCACTGTGTGTGCGAGATCCGTAACCGA
* *
46130556 GCACTGTGTGTGCGAGATCGGT---TGA
1 GCACTGTGTGTGCGAGATCCGTAACCGA
* * ****
46130581 GGCACTGTGTGTACGAGATCGGTTGTTGA
1 -GCACTGTGTGTGCGAGATCCGTAACCGA
* *
46130610 GGCACTGTGTGTGCGAGTTCCGTAACCAA
1 -GCACTGTGTGTGCGAGATCCGTAACCGA
*
46130639 GCACTGTGTGTGCAAGATC
1 GCACTGTGTGTGCGAGATC
46130658 GGTTGTTGGG
Statistics
Matches: 123, Mismatches: 31, Indels: 8
0.76 0.19 0.05
Matches are distributed among these distances:
25 1 0.01
26 21 0.17
28 77 0.63
29 24 0.20
ACGTcount: A:0.18, C:0.19, G:0.35, T:0.28
Consensus pattern (28 bp):
GCACTGTGTGTGCGAGATCCGTAACCGA
Found at i:46130592 original size:56 final size:56
Alignment explanation
Indices: 46130470--46130592 Score: 198
Period size: 56 Copynumber: 2.2 Consensus size: 56
46130460 AAGTGAACAT
*
46130470 AGGCACTGTGTGTGTGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGTGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGG-TGTTG
*
46130527 AGG-ACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATC-G-GTTG
1 AGGCACTGTGTGTGTGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTGTTG
46130580 AGGCACTGTGTGT
1 AGGCACTGTGTGT
46130593 ACGAGATCGG
Statistics
Matches: 63, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
53 7 0.11
54 9 0.14
55 1 0.02
56 43 0.68
57 3 0.05
ACGTcount: A:0.17, C:0.18, G:0.37, T:0.28
Consensus pattern (56 bp):
AGGCACTGTGTGTGTGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTGTTG
Found at i:46130649 original size:83 final size:82
Alignment explanation
Indices: 46130500--46130662 Score: 299
Period size: 83 Copynumber: 2.0 Consensus size: 82
46130490 CCGTAACCGA
*
46130500 GCACTGTGTGTGCGAGATCGGTTGTTGAGGACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGT
1 GCACTGTGTGTACGAGATCGGTTGTTGAGGACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGT
*
46130565 GTGCGAGATCGGTTGAG
66 GTGCAAGATCGGTTGAG
46130582 GCACTGTGTGTACGAGATCGGTTGTTGAGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTG
1 GCACTGTGTGTACGAGATCGGTTGTTGAGG-ACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTG
46130647 TGTGCAAGATCGGTTG
65 TGTGCAAGATCGGTTG
46130663 TTGGGGCACT
Statistics
Matches: 78, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
82 29 0.37
83 49 0.63
ACGTcount: A:0.18, C:0.18, G:0.36, T:0.28
Consensus pattern (82 bp):
GCACTGTGTGTACGAGATCGGTTGTTGAGGACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGT
GTGCAAGATCGGTTGAG
Found at i:46135637 original size:27 final size:26
Alignment explanation
Indices: 46135598--46135669 Score: 72
Period size: 26 Copynumber: 2.7 Consensus size: 26
46135588 GCAATCAAAT
* *
46135598 ATGGTACTCAGTGTACAAATATTGAGA
1 ATGGCACTTAGTGT-CAAATATTGAGA
** *
46135625 ATGGCACTTAGTGTGGAGTATTGAGA
1 ATGGCACTTAGTGTCAAATATTGAGA
*
46135651 ATGACACTTAGTGTGCAAA
1 ATGGCACTTAGTGT-CAAA
46135670 ATATCGAATG
Statistics
Matches: 35, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
26 22 0.63
27 13 0.37
ACGTcount: A:0.33, C:0.11, G:0.26, T:0.29
Consensus pattern (26 bp):
ATGGCACTTAGTGTCAAATATTGAGA
Found at i:46137664 original size:28 final size:28
Alignment explanation
Indices: 46137633--46137820 Score: 144
Period size: 28 Copynumber: 6.7 Consensus size: 28
46137623 GTGAACATAG
* *
46137633 GCACTGTGTGTGTGAGTTCCGTAACCGA
1 GCACTGTGTGTGCGAGATCCGTAACCGA
* ****
46137661 GCACTGTGTGTGCGAGATCGGTTGTTGA
1 GCACTGTGTGTGCGAGATCCGTAACCGA
* *
46137689 GGACTGTGTGTGCGAGTTCCGTAACC-A
1 GCACTGTGTGTGCGAGATCCGTAACCGA
* ****
46137716 GCACTGTGTGTGCGAGATCGGTTGTTGA
1 GCACTGTGTGTGCGAGATCCGTAACCGA
* * ****
46137744 GGCACTGTGTGTACGAGATCGGTTGTTGA
1 -GCACTGTGTGTGCGAGATCCGTAACCGA
* *
46137773 GGCACTGTGTGTGCGAGTTCCGTAACCAA
1 -GCACTGTGTGTGCGAGATCCGTAACCGA
*
46137802 GCACTGTGTGTGCAAGATC
1 GCACTGTGTGTGCGAGATC
46137821 GGTTGTTGGG
Statistics
Matches: 126, Mismatches: 32, Indels: 4
0.78 0.20 0.02
Matches are distributed among these distances:
27 20 0.16
28 58 0.46
29 48 0.38
ACGTcount: A:0.18, C:0.19, G:0.35, T:0.29
Consensus pattern (28 bp):
GCACTGTGTGTGCGAGATCCGTAACCGA
Found at i:46137737 original size:55 final size:57
Alignment explanation
Indices: 46137631--46137760 Score: 228
Period size: 56 Copynumber: 2.3 Consensus size: 57
46137621 AAGTGAACAT
*
46137631 AGGCACTGTGTGTGTGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
46137688 AGG-ACTGTGTGTGCGAGTTCCGTAACC-AGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
*
46137743 AGGCACTGTGTGTACGAG
1 AGGCACTGTGTGTGCGAG
46137761 ATCGGTTGTT
Statistics
Matches: 70, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
55 31 0.44
56 36 0.51
57 3 0.04
ACGTcount: A:0.17, C:0.18, G:0.37, T:0.28
Consensus pattern (57 bp):
AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
Found at i:46137748 original size:29 final size:29
Alignment explanation
Indices: 46137661--46137844 Score: 178
Period size: 29 Copynumber: 6.4 Consensus size: 29
46137651 CCGTAACCGA
46137661 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* * ****
46137690 G-ACTGTGTGTGCGAGTTCCG-TAACCA-
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
46137716 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
*
46137745 GCACTGTGTGTACGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* * **** *
46137774 GCACTGTGTGTGCGAGTTCCG-TAACCAA
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* *
46137802 GCACTGTGTGTGCAAGATCGGTTGTTGGG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
46137831 GCACTAAGTGTGTG
1 GCACT--GTGTGTG
46137845 AAATGAGATC
Statistics
Matches: 119, Mismatches: 30, Indels: 10
0.75 0.19 0.06
Matches are distributed among these distances:
26 1 0.01
27 19 0.16
28 39 0.33
29 53 0.45
31 7 0.06
ACGTcount: A:0.17, C:0.17, G:0.37, T:0.29
Consensus pattern (29 bp):
GCACTGTGTGTGCGAGATCGGTTGTTGAG
Found at i:46137828 original size:86 final size:84
Alignment explanation
Indices: 46137661--46137835 Score: 305
Period size: 86 Copynumber: 2.1 Consensus size: 84
46137651 CCGTAACCGA
*
46137661 GCACTGTGTGTGCGAGATCGGTTGTTGAGGACTGTGTGTGCGAGTTCCGTAACCAGCACTGTGTG
1 GCACTGTGTGTACGAGATCGGTTGTTGAGGACTGTGTGTGCGAGTTCCGTAACCAGCACTGTGTG
*
46137726 TGCGAGATCGGTTGTTGAG
66 TGCAAGATCGGTTGTTGAG
46137745 GCACTGTGTGTACGAGATCGGTTGTTGAGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTG
1 GCACTGTGTGTACGAGATCGGTTGTTGAGG-ACTGTGTGTGCGAGTTCCGTAACC-AGCACTGTG
*
46137810 TGTGCAAGATCGGTTGTTGGG
64 TGTGCAAGATCGGTTGTTGAG
46137831 GCACT
1 GCACT
46137836 AAGTGTGTGA
Statistics
Matches: 86, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
84 29 0.34
85 24 0.28
86 33 0.38
ACGTcount: A:0.17, C:0.18, G:0.37, T:0.29
Consensus pattern (84 bp):
GCACTGTGTGTACGAGATCGGTTGTTGAGGACTGTGTGTGCGAGTTCCGTAACCAGCACTGTGTG
TGCAAGATCGGTTGTTGAG
Found at i:46142810 original size:28 final size:28
Alignment explanation
Indices: 46142770--46142848 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
46142760 GCAATCAAAT
* * *
46142770 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
46142798 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
46142826 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
46142849 CGAATGATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:46146521 original size:19 final size:17
Alignment explanation
Indices: 46146497--46146540 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 17
46146487 GACATATTTG
46146497 ATGATTACAAGAGTCTAAA
1 ATGATTAC--GAGTCTAAA
*
46146516 ATGATTGACGTGTCTAAA
1 ATGATT-ACGAGTCTAAA
46146534 ATGATTA
1 ATGATTA
46146541 ACGTTGCAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 1 0.04
18 14 0.61
19 6 0.26
20 2 0.09
ACGTcount: A:0.41, C:0.09, G:0.18, T:0.32
Consensus pattern (17 bp):
ATGATTACGAGTCTAAA
Found at i:46146532 original size:18 final size:18
Alignment explanation
Indices: 46146509--46146544 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
46146499 GATTACAAGA
*
46146509 GTCTAAAATGATTGACGT
1 GTCTAAAATGATTAACGT
46146527 GTCTAAAATGATTAACGT
1 GTCTAAAATGATTAACGT
46146545 TGCAGAACGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.33
Consensus pattern (18 bp):
GTCTAAAATGATTAACGT
Found at i:46164584 original size:39 final size:39
Alignment explanation
Indices: 46164530--46164615 Score: 127
Period size: 39 Copynumber: 2.2 Consensus size: 39
46164520 TTTAGTTATT
* * *
46164530 TTAGTTTGTGTCTTTAATTATGTCATAATTTGAGCATCA
1 TTAGTATGAGTCTTTAATTATGTCATAATTTGAACATCA
*
46164569 TTAGTATGAGTCTTTAATTATGTCATAGTTTGAACATCA
1 TTAGTATGAGTCTTTAATTATGTCATAATTTGAACATCA
*
46164608 TTAATATG
1 TTAGTATG
46164616 TGTTCTGCAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.29, C:0.09, G:0.15, T:0.47
Consensus pattern (39 bp):
TTAGTATGAGTCTTTAATTATGTCATAATTTGAACATCA
Found at i:46164741 original size:26 final size:26
Alignment explanation
Indices: 46164705--46164758 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
46164695 TGTAACTCCT
46164705 ATGTTAGTTAAAGTTTGCATCATTAA
1 ATGTTAGTTAAAGTTTGCATCATTAA
46164731 ATGTTAGTTAAAGTTTGCATCATTAA
1 ATGTTAGTTAAAGTTTGCATCATTAA
46164757 AT
1 AT
46164759 TAAGTCATGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.35, C:0.07, G:0.15, T:0.43
Consensus pattern (26 bp):
ATGTTAGTTAAAGTTTGCATCATTAA
Found at i:46170767 original size:25 final size:25
Alignment explanation
Indices: 46170731--46170780 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
46170721 TTGTAAATCA
46170731 GGAAAATATCTTTAGA-AATTTTCT
1 GGAAAATATCTTTAGAGAATTTTCT
*
46170755 GGAATAATCTCTTTAGAGAATTTTCT
1 GGAA-AATATCTTTAGAGAATTTTCT
46170781 CTCTACAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 4 0.17
25 11 0.48
26 8 0.35
ACGTcount: A:0.34, C:0.10, G:0.14, T:0.42
Consensus pattern (25 bp):
GGAAAATATCTTTAGAGAATTTTCT
Found at i:46174883 original size:23 final size:25
Alignment explanation
Indices: 46174844--46174892 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 25
46174834 GAGTCGAAGA
46174844 GAAATAGATTTTGATCCTGA-TGAT
1 GAAATAGATTTTGATCCTGATTGAT
*
46174868 GAAATGGA-TTTGATCCTGATTGAT
1 GAAATAGATTTTGATCCTGATTGAT
46174892 G
1 G
46174893 CAAAATCTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 11 0.48
24 12 0.52
ACGTcount: A:0.31, C:0.08, G:0.24, T:0.37
Consensus pattern (25 bp):
GAAATAGATTTTGATCCTGATTGAT
Found at i:46182486 original size:8 final size:8
Alignment explanation
Indices: 46182448--46182475 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
46182438 AAAGTTATAA
46182448 AAAATTTT
1 AAAATTTT
46182456 AAAATTTT
1 AAAATTTT
46182464 AAAATTTT
1 AAAATTTT
46182472 AAAA
1 AAAA
46182476 AAATTCTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (8 bp):
AAAATTTT
Found at i:46189089 original size:39 final size:39
Alignment explanation
Indices: 46189046--46189294 Score: 376
Period size: 39 Copynumber: 6.3 Consensus size: 39
46189036 AGACTAAGAT
46189046 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
*
46189085 CCGAAGGCATTTGTGCTAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
46189124 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
* *
46189163 CCGAAGGCATTTGTACGAGATACTAATTCTGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
* * *
46189202 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-C
* *
46189242 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-TCCGGGCTAAG-C
46189282 CCGAAGGCATTTG
1 CCGAAGGCATTTG
46189295 AACGAGGAGC
Statistics
Matches: 193, Mismatches: 14, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
39 147 0.76
40 46 0.24
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
Found at i:46189130 original size:78 final size:81
Alignment explanation
Indices: 46188994--46189294 Score: 365
Period size: 78 Copynumber: 3.8 Consensus size: 81
46188984 TTGAATGATG
* * * *
46188994 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCAGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATATCCGGGCTAAGACCCGAAGGCAT
46189056 TTGTGCGAGATACTAAT
65 TTGTGCGAGATACTAAT
*
46189073 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-TAGATACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATATCCGGGCTAAGACCCGAAGGCAT
46189134 TTGTGCGAGATACTAAT
65 TTGTGCGAGATACTAAT
* *
46189151 TCCGGGCTAAG-CCCGAAGGCATTTGTACG-AGATACTAAT-TCTGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATATCCGGGCTAAGACCCGAAGGCAT
* *
46189212 TTGTGCGAGTTACTAAA
65 TTGTGCGAGATACTAAT
* * * * *
46189229 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
46189293 TG
66 TG
46189295 AACGAGGAGC
Statistics
Matches: 199, Mismatches: 14, Indels: 17
0.87 0.06 0.07
Matches are distributed among these distances:
78 121 0.61
79 53 0.27
80 25 0.13
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAT
Found at i:46189201 original size:117 final size:119
Alignment explanation
Indices: 46188994--46189300 Score: 394
Period size: 117 Copynumber: 2.6 Consensus size: 119
46188984 TTGAATGATG
* * * * * *
46188994 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCAGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAA-TTACTATAACCGGGCTAAG-TCCCGAAGGCAT
* * *
46189056 TTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCTAGATACTAAT
64 TTGTACGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAA
*
46189112 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-TACTA-ATTCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA-ATTACTATA-ACCGGGCTAAGTCCCGAAGGCAT
* *
46189173 TTGTACGAGATACTAATTCTGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
64 TTGTACGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAA
* *
46189229 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
*
46189294 GAACGAG
66 GTACGAG
46189301 GAGCTATATC
Statistics
Matches: 166, Mismatches: 14, Indels: 17
0.84 0.07 0.09
Matches are distributed among these distances:
117 82 0.49
118 56 0.34
119 27 0.16
120 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (119 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTACGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:46197156 original size:39 final size:39
Alignment explanation
Indices: 46197113--46197361 Score: 376
Period size: 39 Copynumber: 6.3 Consensus size: 39
46197103 AGACTAAGAT
46197113 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
*
46197152 CCGAAGGCATTTGTGCTAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
46197191 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
* *
46197230 CCGAAGGCATTTGTACGAGATACTAATTCTGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
* * *
46197269 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-C
* *
46197309 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-TCCGGGCTAAG-C
46197349 CCGAAGGCATTTG
1 CCGAAGGCATTTG
46197362 AACGAGGAGC
Statistics
Matches: 193, Mismatches: 14, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
39 147 0.76
40 46 0.24
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
Found at i:46197197 original size:78 final size:81
Alignment explanation
Indices: 46197061--46197361 Score: 365
Period size: 78 Copynumber: 3.8 Consensus size: 81
46197051 TTGAATGATG
* * * *
46197061 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCAGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATATCCGGGCTAAGACCCGAAGGCAT
46197123 TTGTGCGAGATACTAAT
65 TTGTGCGAGATACTAAT
*
46197140 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-TAGATACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATATCCGGGCTAAGACCCGAAGGCAT
46197201 TTGTGCGAGATACTAAT
65 TTGTGCGAGATACTAAT
* *
46197218 TCCGGGCTAAG-CCCGAAGGCATTTGTACG-AGATACTAAT-TCTGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATATCCGGGCTAAGACCCGAAGGCAT
* *
46197279 TTGTGCGAGTTACTAAA
65 TTGTGCGAGATACTAAT
* * * * *
46197296 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
46197360 TG
66 TG
46197362 AACGAGGAGC
Statistics
Matches: 199, Mismatches: 14, Indels: 17
0.87 0.06 0.07
Matches are distributed among these distances:
78 121 0.61
79 53 0.27
80 25 0.13
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAT
Found at i:46197268 original size:117 final size:119
Alignment explanation
Indices: 46197061--46197367 Score: 394
Period size: 117 Copynumber: 2.6 Consensus size: 119
46197051 TTGAATGATG
* * * * * *
46197061 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCAGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAA-TTACTATAACCGGGCTAAG-TCCCGAAGGCAT
* * *
46197123 TTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCTAGATACTAAT
64 TTGTACGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAA
*
46197179 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-TACTA-ATTCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA-ATTACTATA-ACCGGGCTAAGTCCCGAAGGCAT
* *
46197240 TTGTACGAGATACTAATTCTGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
64 TTGTACGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAA
* *
46197296 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
*
46197361 GAACGAG
66 GTACGAG
46197368 GAGCTATATC
Statistics
Matches: 166, Mismatches: 14, Indels: 17
0.84 0.07 0.09
Matches are distributed among these distances:
117 82 0.49
118 56 0.34
119 27 0.16
120 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (119 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTACGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:46199872 original size:48 final size:48
Alignment explanation
Indices: 46199810--46200427 Score: 576
Period size: 48 Copynumber: 12.9 Consensus size: 48
46199800 GATATTTGGG
* * * * *
46199810 TGATATGTGTGCCAGTGTAAGACCTTGTCTAGGACATGACATCGGCCA
1 TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * **
46199858 TGATATGAGAGCCAGT-TAAGACCATGTTTGGAACATGGCATCGGTGA
1 TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * *
46199905 TGTTGTGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GACA
1 TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * *
46199952 TTGATAT-ATGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCA
1 -TGATATGA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * * * * *
46200001 -CATTATGAGAGCCAATGTAAGGCCATGTCTAGGACATGACATC-GACA
1 TGA-TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * * * * *
46200048 TTGAGACGAGAGCTAGTGTAAGACCATGTCTAGGACATGGTATCAGCCA
1 -TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * * * *
46200097 TGATATGAGAGCCATTGTAAGACCATGTTTGGAACATGGTATCGGCGA
1 TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * * *
46200145 TGTTGTGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCAG-CA
1 TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * * *
46200192 TTGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGACACA
1 -TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GGC-CA
*
46200243 T--TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGACACA
1 TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GGC-CA
* ***
46200291 T--TATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATC-AATA
1 TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * * *
46200336 TTGAGACGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTC-
1 -TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * * *
46200384 TCGACATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATC
1 T-GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
46200428 AACAATTTAC
Statistics
Matches: 470, Mismatches: 82, Indels: 36
0.80 0.14 0.06
Matches are distributed among these distances:
45 1 0.00
46 2 0.00
47 47 0.10
48 409 0.87
49 8 0.02
50 1 0.00
51 2 0.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (48 bp):
TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
Found at i:46205704 original size:26 final size:26
Alignment explanation
Indices: 46205664--46205771 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
46205654 TGGTACAAAG
46205664 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
46205690 TGACAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
46205716 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
46205742 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
46205768 TGAT
1 TGAT
46205772 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:46207433 original size:27 final size:27
Alignment explanation
Indices: 46207393--46207506 Score: 133
Period size: 27 Copynumber: 4.2 Consensus size: 27
46207383 AGGAAGCATC
46207393 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTATGCCACAATTATCTGAT
* * *
46207420 CTGGTGGCTCTGCCAC-ATATATTTGTT
1 CTGGTGGCTATGCCACAAT-TATCTGAT
** *
46207447 CTGGTGGCTATGCCACGGTTATTTGAT
1 CTGGTGGCTATGCCACAATTATCTGAT
*
46207474 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTATGCCACAATTATCTG-AT
46207501 CTGGTG
1 CTGGTG
46207507 ACTTCGTCAC
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
26 7 0.09
27 66 0.89
28 1 0.01
ACGTcount: A:0.17, C:0.22, G:0.25, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTATGCCACAATTATCTGAT
Found at i:46207475 original size:54 final size:54
Alignment explanation
Indices: 46207393--46207506 Score: 176
Period size: 54 Copynumber: 2.1 Consensus size: 54
46207383 AGGAAGCATC
*
46207393 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATTTGT-T
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACA-ATATCTGTAT
** *
46207447 CTGGTGGCTATGCCACGGTTATTTGATCTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACAATATCTGTAT
46207501 CTGGTG
1 CTGGTG
46207507 ACTTCGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
53 7 0.13
54 48 0.87
ACGTcount: A:0.17, C:0.22, G:0.25, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACAATATCTGTAT
Found at i:46210120 original size:15 final size:15
Alignment explanation
Indices: 46210088--46210116 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
46210078 TTTTTCTGTG
46210088 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
46210103 TTTATT-TGTGTGAA
1 TTTATTATGTGTGAA
46210117 ATTTTCGTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.24, C:0.00, G:0.21, T:0.55
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:46212600 original size:37 final size:37
Alignment explanation
Indices: 46212550--46212628 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
46212540 TTATTACGAA
* * *
46212550 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
46212587 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
46212624 GTCTT
1 GTCTT
46212629 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:46212906 original size:47 final size:47
Alignment explanation
Indices: 46212746--46213064 Score: 530
Period size: 47 Copynumber: 6.7 Consensus size: 47
46212736 GCCCTTCGGG
* *
46212746 ACTTATCACATTCATCACATTGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
46212796 ACTTTCACATTCATCACATCGGCCATTAGGCTTTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
46212845 GCTTTCACATTCATCACATCGGCCATTAGGCTTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
46212892 GCTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
46212939 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
46212986 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
46213033 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
46213065 ATACTATCAT
Statistics
Matches: 261, Mismatches: 8, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
47 177 0.68
49 80 0.31
50 4 0.02
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.32
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:46213002 original size:25 final size:25
Alignment explanation
Indices: 46212926--46213004 Score: 74
Period size: 25 Copynumber: 3.3 Consensus size: 25
46212916 ATTAGGCCTT
46212926 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
**** ***
46212951 ATCACAT-CGGCCA-TTAGGCATT-
1 ATCACATATATACACTTTCACATTC
46212973 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
46212998 ATCACAT
1 ATCACAT
46213005 CGGCCATTAG
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 14 0.38
ACGTcount: A:0.34, C:0.28, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:46216511 original size:40 final size:40
Alignment explanation
Indices: 46216481--46216781 Score: 349
Period size: 40 Copynumber: 7.5 Consensus size: 40
46216471 AGCATGATTA
* * *
46216481 CTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* ** *
46216521 CTCTTTGGGGTTTAGCACGGATATATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* *
46216561 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* *
46216601 CTCCTCGGGACTTAGCCCGGATATATCACTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* * *
46216641 CTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* * * *
46216681 CTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATG
1 CTCTTCGGGACTTAGCCCGGATATA-TCACTAGCACGAATG
* * *
46216722 C-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AAAG
1 CTCTTCGGGA-CTTAGCCCGGATAT-ATCAC-TAGCACGAATG
46216762 C-CTTCGGGACTTAGCCCGGA
1 CTCTTCGGGACTTAGCCCGGA
46216782 CATCATTCGA
Statistics
Matches: 222, Mismatches: 34, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.01
40 199 0.90
41 20 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
Found at i:46217128 original size:29 final size:29
Alignment explanation
Indices: 46217089--46217167 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
46217079 CTTAATAATC
*
46217089 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
46217119 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
46217148 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
46217168 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:46217210 original size:43 final size:43
Alignment explanation
Indices: 46217149--46217251 Score: 188
Period size: 43 Copynumber: 2.4 Consensus size: 43
46217139 TGCATTTCAA
46217149 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAAAACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAAAACTTATT
* *
46217192 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTCTT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAAAACTTATT
46217235 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
46217252 TGAAAACCAA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAAAACTTATT
Found at i:46219154 original size:37 final size:37
Alignment explanation
Indices: 46219104--46219182 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
46219094 TTATTACGAA
* * *
46219104 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
46219141 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
46219178 GTCTT
1 GTCTT
46219183 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:46219460 original size:47 final size:47
Alignment explanation
Indices: 46219300--46219618 Score: 539
Period size: 47 Copynumber: 6.7 Consensus size: 47
46219290 GCCCTTCGGG
46219300 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCCTATCAC--ATATATAC
46219350 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCAC--ATATATAC
46219399 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAC
* **
46219446 GCTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAC
**
46219493 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAC
*
46219540 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAC
46219587 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
46219619 ATACTATCAT
Statistics
Matches: 264, Mismatches: 5, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
47 176 0.67
49 84 0.32
50 4 0.02
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAC
Found at i:46219486 original size:22 final size:23
Alignment explanation
Indices: 46219453--46219533 Score: 67
Period size: 22 Copynumber: 3.5 Consensus size: 23
46219443 TACGCTTTCA
46219453 CATTCATCACATCGGCCATTAGG
1 CATTCATCACATCGGCCATTAGG
**** ***
46219476 CATT-ATCACATATATACACTTTCA
1 CATTCATCACAT-CGGCCA-TTAGG
46219500 CATTCATCACATCGGCCATTAGG
1 CATTCATCACATCGGCCATTAGG
46219523 CATT-ATCACAT
1 CATTCATCACAT
46219534 ATATACACTT
Statistics
Matches: 41, Mismatches: 14, Indels: 7
0.66 0.23 0.11
Matches are distributed among these distances:
22 14 0.34
23 12 0.29
24 8 0.20
25 7 0.17
ACGTcount: A:0.31, C:0.28, G:0.10, T:0.31
Consensus pattern (23 bp):
CATTCATCACATCGGCCATTAGG
Found at i:46234249 original size:115 final size:116
Alignment explanation
Indices: 46234032--46234265 Score: 400
Period size: 115 Copynumber: 2.0 Consensus size: 116
46234022 AGAAAATGAA
*
46234032 TCATGGTTGTTAAACAAACAACTTTTGTGAAGTAGTTTTCATGAAAACCCTAACTAAAGACCATT
1 TCATGGTTGTTAAACAAACAACTTTTGTGAAATAGTTTTCATGAAAACCC--ACTAAAGACCATT
*
46234097 TTGCATAAGTTATAAATTCTGGGGTAAATGTGTGAAATGATGGGAATTGTGGGC
64 TTGCATAAGTTATAAATTCTGGGGTAAATATGTGAAATGATGGGAA-TGTGGGC
*
46234151 TCATGGTTGTTAAACAAACAACTTTTGTGAAATAGTTTTCATGAAAA-CC-CTAAGGACCATTTT
1 TCATGGTTGTTAAACAAACAACTTTTGTGAAATAGTTTTCATGAAAACCCACTAAAGACCATTTT
46234214 GCATAAGTTATAAATTCTGGGGTAAATATGTGAAATGATGGGAATGTGGGC
66 GCATAAGTTATAAATTCTGGGGTAAATATGTGAAATGATGGGAATGTGGGC
46234265 T
1 T
46234266 GCTTCTAGTA
Statistics
Matches: 112, Mismatches: 3, Indels: 5
0.93 0.03 0.04
Matches are distributed among these distances:
114 8 0.07
115 56 0.50
118 2 0.02
119 46 0.41
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.33
Consensus pattern (116 bp):
TCATGGTTGTTAAACAAACAACTTTTGTGAAATAGTTTTCATGAAAACCCACTAAAGACCATTTT
GCATAAGTTATAAATTCTGGGGTAAATATGTGAAATGATGGGAATGTGGGC
Found at i:46234798 original size:48 final size:48
Alignment explanation
Indices: 46234726--46235282 Score: 554
Period size: 48 Copynumber: 11.6 Consensus size: 48
46234716 TATGTGTGCC
* * *
46234726 AGTGTAAGACCTTATCTGGGACATGGCATCGACCACGATATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCATGATATGAGAGCT
* * * * * * *
46234774 AGTGTAAGACCATGTTTGGAACATGGCATCGGCGATGTTGTGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCATGATATGAGAGCT
* * *
46234822 AGTGTAAGACCATGTCTGGGACATGGCATCG-GCATTGATATGTGCGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCA-TGATATGAGAGCT
* *
46234870 AGTGTAAGACCATGTCTGGGACATGGCATC-AGCCA-CATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGA-CCATGA-TATGAGAGCT
* * * *
46234918 AATGTAAGACCATGTCTGGGACATGGCATC-AGCATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCA-TGATATGAGAGCT
* * * * * *
46234966 AGTGTAAGACCATGTATGGGACACGACATCGACCACGATCTGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCATGATATGAGAGCT
* * * * *
46235014 AGTGTAAGACCATGTTTGGAACATGGCATCGACGATGTTGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCATGATATGAGAGCT
* * * *
46235062 AGCGTAAGACCATGTCTGGGACATGGCATC-AGCATTGATATGTGCGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCA-TGATATGAGAGCT
* * * * *
46235110 AGTGTAAGATCATGTTTGGGACATGGCATCAACCA-CATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCATGA-TATGAGAGCT
* * *
46235158 AGTGTAAGACCATGTCTAGGACATGGCATCGA-CATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCA-TGATATGAGAGCT
* * * *
46235206 AGTGTAAGACTATGTCTGGGACATGGCATCGACC-TCGACATGCGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCAT-GATATGAGAGCT
* *
46235254 AGTGTAAGACCATGTTTGGAACATGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCAT
46235283 ATCCTCTTGT
Statistics
Matches: 412, Mismatches: 83, Indels: 28
0.79 0.16 0.05
Matches are distributed among these distances:
47 10 0.02
48 391 0.95
49 11 0.03
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACCATGATATGAGAGCT
Found at i:46240399 original size:43 final size:43
Alignment explanation
Indices: 46240351--46240453 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
46240341 TTGGTTTTCA
46240351 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
*
46240394 GCACTAAGTATGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
46240437 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
46240454 TTGAAATGCA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.23, C:0.16, G:0.35, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:46240473 original size:29 final size:29
Alignment explanation
Indices: 46240438--46240508 Score: 90
Period size: 29 Copynumber: 2.4 Consensus size: 29
46240428 GTGAGATTGG
* *
46240438 CACTAAGTGTGCGGGCTTGAAA-TGCATGA
1 CACTAAGTGTGCGAG-TTGAAAGTACATGA
* *
46240467 CACTAAGTGTGCGAGTTTAAAGTACATGG
1 CACTAAGTGTGCGAGTTGAAAGTACATGA
46240496 CACTAAGTGTGCG
1 CACTAAGTGTGCG
46240509 TGGTTGATTA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 5 0.14
29 32 0.86
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (29 bp):
CACTAAGTGTGCGAGTTGAAAGTACATGA
Found at i:46240947 original size:40 final size:40
Alignment explanation
Indices: 46240902--46241134 Score: 322
Period size: 40 Copynumber: 5.8 Consensus size: 40
46240892 TACTAAATCT
46240902 GGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCC
1 GGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCC
*
46240942 AGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCC
1 GGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCC
*
46240982 GGGCTAAGTCCCGAGGAGCATTCATGCTAGTGATGTATCC
1 GGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCC
* * *
46241022 GGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCC
1 GGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCC
* ** * * * * *
46241062 GTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATGTCC
1 GGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCC
* * *
46241102 GGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 GGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
46241135 CGTGTATTCG
Statistics
Matches: 172, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 172 1.00
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCC
Found at i:46240956 original size:80 final size:80
Alignment explanation
Indices: 46240819--46241121 Score: 326
Period size: 80 Copynumber: 3.8 Consensus size: 80
46240809 TTGAATGATG
** * *
46240819 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAG-GC
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATATCCGGGCTAAG-TCCCGAAGAGC
* * * *
46240880 ATTGGTGCGAGTTACTAAA
63 ATTCGTGCTAGTGA-TATA
* * *
46240899 TCTGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCAGGCTAAGTCCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
* *
46240964 CATGCTAGTGATGTA
66 CGTGCTAGTGATATA
* * *
46240979 TCCGGGCTAAGTCCCGAGGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
46241044 CGTGCTAGTGATATA
66 CGTGCTAGTGATATA
* ** * * * * *
46241059 TCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATGTCCGGGCTAGGTCCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCA
46241122 ATCATGCTGG
Statistics
Matches: 189, Mismatches: 30, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
79 1 0.01
80 163 0.86
81 19 0.10
82 6 0.03
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
CGTGCTAGTGATATA
Found at i:46253167 original size:17 final size:17
Alignment explanation
Indices: 46253147--46253189 Score: 61
Period size: 17 Copynumber: 2.5 Consensus size: 17
46253137 CCAAAAATAG
46253147 AAATGAAAATGAAATGA
1 AAATGAAAATGAAATGA
46253164 AAAT-ATAAATGAAATGA
1 AAATGA-AAATGAAATGA
46253181 AAATAGAAA
1 AAAT-GAAA
46253190 TTTATAATCC
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
16 1 0.04
17 19 0.83
18 2 0.09
19 1 0.04
ACGTcount: A:0.67, C:0.00, G:0.14, T:0.19
Consensus pattern (17 bp):
AAATGAAAATGAAATGA
Found at i:46253184 original size:11 final size:12
Alignment explanation
Indices: 46253140--46253177 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
46253130 TAGGTTTCCA
46253140 AAAATAGAAATG
1 AAAATAGAAATG
46253152 AAAAT-GAAATG
1 AAAATAGAAATG
*
46253163 AAAATATAAATG
1 AAAATAGAAATG
46253175 AAA
1 AAA
46253178 TGAAAATAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 11 0.46
12 13 0.54
ACGTcount: A:0.68, C:0.00, G:0.13, T:0.18
Consensus pattern (12 bp):
AAAATAGAAATG
Found at i:46253190 original size:17 final size:17
Alignment explanation
Indices: 46253153--46253190 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
46253143 ATAGAAATGA
*
46253153 AAATGAAATGAAAATAT
1 AAATGAAATGAAAATAG
46253170 AAATGAAATGAAAATAG
1 AAATGAAATGAAAATAG
46253187 AAAT
1 AAAT
46253191 TTATAATCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.66, C:0.00, G:0.13, T:0.21
Consensus pattern (17 bp):
AAATGAAATGAAAATAG
Found at i:46253370 original size:26 final size:26
Alignment explanation
Indices: 46253334--46253391 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
46253324 TTTTTTTCAC
*
46253334 AATTTTACTAGGGGAAAAATCATCAA
1 AATTTTACTAGGGGAAAAAGCATCAA
* *
46253360 AATTTTACTAGGGGTAAAAGCGTCAA
1 AATTTTACTAGGGGAAAAAGCATCAA
46253386 AATTTT
1 AATTTT
46253392 GCTTGGGTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.41, C:0.10, G:0.17, T:0.31
Consensus pattern (26 bp):
AATTTTACTAGGGGAAAAAGCATCAA
Found at i:46270987 original size:46 final size:45
Alignment explanation
Indices: 46270890--46271103 Score: 175
Period size: 46 Copynumber: 4.6 Consensus size: 45
46270880 ATATCTGAGT
* * * *
46270890 CGATGCCATGTCCCAGACATGGTTTTACGCTGAC-AC-TCTCGTA-GC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTCGTCTCG-AGGC
*
46270935 CGATGCATGTCCTAGACATGTCTTACACTGGCTTACGTCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTT-CGTCTCGAGGC
* * * * *
46270981 CGATGCATGTCCCAGATATGTCTTACACTAGCACTCGTCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGC-TTCGTCTCGAGGC
* * * * *
46271027 CAATGCCATGTCCTAGACATGATCTTACACTGGCTCTCATAAT-GTGGC
1 CGATG-CATGTCCCAGACATG-TCTTACACTGGCT-TCGT-CTCGAGGC
*
46271075 CGATGCATGTCCCAGACATTTCTTACACT
1 CGATGCATGTCCCAGACATGTCTTACACT
46271104 AGCTGACAAT
Statistics
Matches: 136, Mismatches: 24, Indels: 17
0.77 0.14 0.10
Matches are distributed among these distances:
43 10 0.07
44 13 0.10
45 7 0.05
46 58 0.43
47 27 0.20
48 20 0.15
49 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTTCGTCTCGAGGC
Found at i:46276438 original size:81 final size:81
Alignment explanation
Indices: 46276341--46276513 Score: 224
Period size: 81 Copynumber: 2.1 Consensus size: 81
46276331 GGACTAAGAT
* * *
46276341 CCGAAGGCATTTGTGCGAAATA-CAAATTCCGGG-TTAAGCCCCGAAGGCCTTTGTGCGAGATAC
1 CCGAAGGCATTCGTGCGAAATATCAAA-TCCGGGATTAAGCCCCGAAGGCATTCGTGCGAGATAC
46276404 TAAATCCGGGATTAAGTC
65 TAAATCCGGG-TTAAGTC
** * * * *
46276422 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGATTAAGTCCCGAAGGCATTCGTGCGAGTTATT
1 CCGAAGGCATTCGTGCGAAATATCAAATCCGGGATTAAGCCCCGAAGGCATTCGTGCGAGATACT
*
46276487 AAATCCGGGTTATGTC
66 AAATCCGGGTTAAGTC
46276503 CCGAAGGCATT
1 CCGAAGGCATT
46276514 GTGTGAGTTA
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
81 42 0.52
82 38 0.47
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (81 bp):
CCGAAGGCATTCGTGCGAAATATCAAATCCGGGATTAAGCCCCGAAGGCATTCGTGCGAGATACT
AAATCCGGGTTAAGTC
Found at i:46276534 original size:39 final size:40
Alignment explanation
Indices: 46276288--46276552 Score: 259
Period size: 41 Copynumber: 6.6 Consensus size: 40
46276278 TTGAATGCTG
* * * * * *
46276288 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * **
46276328 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAAATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
* * * *
46276367 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
*
46276408 TCCGGGATTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGG-TTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
*
46276449 TCCGGGATTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGG-TTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
46276490 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
46276529 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
46276553 TGAACGAGGA
Statistics
Matches: 197, Mismatches: 22, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
39 37 0.19
40 73 0.37
41 87 0.44
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:46295601 original size:24 final size:24
Alignment explanation
Indices: 46295529--46295610 Score: 96
Period size: 24 Copynumber: 3.4 Consensus size: 24
46295519 TCATTAGGGA
*
46295529 TTACCCATTGCAGCTCGTGAGAGC
1 TTACCGATTGCAGCTCGTGAGAGC
* *
46295553 TTACCAATT-CTTAACTCGT-AGGAGC
1 TTACCGATTGC--AGCTCGTGA-GAGC
46295578 TTACCGATTGCAGCTCGTGAGAGC
1 TTACCGATTGCAGCTCGTGAGAGC
46295602 TTACCGATT
1 TTACCGATT
46295611 TTCAATTCGT
Statistics
Matches: 49, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
23 1 0.02
24 28 0.57
25 19 0.39
26 1 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (24 bp):
TTACCGATTGCAGCTCGTGAGAGC
Found at i:46295601 original size:49 final size:49
Alignment explanation
Indices: 46295529--46295630 Score: 152
Period size: 49 Copynumber: 2.1 Consensus size: 49
46295519 TCATTAGGGA
46295529 TTACCCATTGCAGCTCGTGAGAGCTTACCAATTCTT-AACTCGTAGGAGC
1 TTACCCATTGCAGCTCGTGAGAGCTTACCAATT-TTCAACTCGTAGGAGC
* * * *
46295578 TTACCGATTGCAGCTCGTGAGAGCTTACCGATTTTCAATTCGTATGAGC
1 TTACCCATTGCAGCTCGTGAGAGCTTACCAATTTTCAACTCGTAGGAGC
46295627 TTAC
1 TTAC
46295631 TAATTTACAG
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
48 2 0.04
49 46 0.96
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.31
Consensus pattern (49 bp):
TTACCCATTGCAGCTCGTGAGAGCTTACCAATTTTCAACTCGTAGGAGC
Found at i:46295626 original size:25 final size:24
Alignment explanation
Indices: 46295542--46295660 Score: 89
Period size: 25 Copynumber: 4.8 Consensus size: 24
46295532 CCCATTGCAG
*
46295542 CTCGTGAGAGCTTACCAATTCTT-AA
1 CTCGT-AGAGCTTACCGATT-TTCAA
* *
46295567 CTCGTAGGAGCTTACCGA-TTGCAG
1 CTCGTA-GAGCTTACCGATTTTCAA
46295591 CTCGTGAGAGCTTACCGATTTTCAA
1 CTCGT-AGAGCTTACCGATTTTCAA
* ** * *
46295616 TTCGTATGAGCTTACTAATTTACAG
1 CTCGTA-GAGCTTACCGATTTTCAA
*
46295641 CTCGTAAGAGCATACCGATT
1 CTCGT-AGAGCTTACCGATT
46295661 CATGGCTTAT
Statistics
Matches: 74, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
23 1 0.01
24 20 0.27
25 52 0.70
26 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (24 bp):
CTCGTAGAGCTTACCGATTTTCAA
Found at i:46303272 original size:49 final size:49
Alignment explanation
Indices: 46303197--46303329 Score: 151
Period size: 49 Copynumber: 2.7 Consensus size: 49
46303187 GTCATTGGGA
* * *
46303197 TTACCGATTGCAACTCATGAGAGCTTACCAATTTTCAGA-TAGTATGAGC
1 TTACCGATTGCAGCTCGTGAGAGCTTACCAATTCTCA-ACTAGTATGAGC
* ** *
46303246 TTACCGATTGCAGCTCGTGAGGGCTTACTGATTCTCAACTCGTATGAGC
1 TTACCGATTGCAGCTCGTGAGAGCTTACCAATTCTCAACTAGTATGAGC
* * *
46303295 TTACCGATTTACAGCTTGTGAGAGCATACCAATTC
1 TTACCGA-TTGCAGCTCGTGAGAGCTTACCAATTC
46303330 ATGTCTCGTT
Statistics
Matches: 69, Mismatches: 13, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
48 1 0.01
49 47 0.68
50 21 0.30
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (49 bp):
TTACCGATTGCAGCTCGTGAGAGCTTACCAATTCTCAACTAGTATGAGC
Found at i:46303319 original size:25 final size:24
Alignment explanation
Indices: 46303197--46303324 Score: 89
Period size: 25 Copynumber: 5.2 Consensus size: 24
46303187 GTCATTGGGA
* * *
46303197 TTACCGATTGCAACTCATGAGAGC
1 TTACCGATTTCAGCTCGTGAGAGC
* * *
46303221 TTACCAATTTTCAGATAGT-ATGAGC
1 TTACCGA-TTTCAGCTCGTGA-GAGC
* *
46303246 TTACCGATTGCAGCTCGTGAGGGC
1 TTACCGATTTCAGCTCGTGAGAGC
* *
46303270 TTACTGATTCTCAACTCGT-ATGAGC
1 TTACCGATT-TCAGCTCGTGA-GAGC
*
46303295 TTACCGATTTACAGCTTGTGAGAGC
1 TTACCGATTT-CAGCTCGTGAGAGC
*
46303320 ATACC
1 TTACC
46303325 AATTCATGTC
Statistics
Matches: 78, Mismatches: 19, Indels: 13
0.71 0.17 0.12
Matches are distributed among these distances:
24 28 0.36
25 49 0.63
26 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (24 bp):
TTACCGATTTCAGCTCGTGAGAGC
Found at i:46314303 original size:22 final size:22
Alignment explanation
Indices: 46314278--46314334 Score: 71
Period size: 21 Copynumber: 2.6 Consensus size: 22
46314268 TGCAGGGCTC
*
46314278 ACACGCTCGTGTGGACCAAGGG
1 ACACGCCCGTGTGGACCAAGGG
**
46314300 ACACGCCCGTGT-GACCCTGGG
1 ACACGCCCGTGTGGACCAAGGG
*
46314321 ACATGCCCGTGTGG
1 ACACGCCCGTGTGG
46314335 GAGGCCGTGT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 18 0.60
22 12 0.40
ACGTcount: A:0.18, C:0.32, G:0.35, T:0.16
Consensus pattern (22 bp):
ACACGCCCGTGTGGACCAAGGG
Found at i:46316149 original size:23 final size:23
Alignment explanation
Indices: 46316106--46316149 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
46316096 CCAAAGCCCC
*
46316106 ATTAAAAATTTTTCAGCACTTGT
1 ATTAAAAATTTTTCAGAACTTGT
*
46316129 ATTAATAAA-TTTTCTGAACTT
1 ATTAA-AAATTTTTCAGAACTT
46316150 TTCATCAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 15 0.83
24 3 0.17
ACGTcount: A:0.36, C:0.11, G:0.07, T:0.45
Consensus pattern (23 bp):
ATTAAAAATTTTTCAGAACTTGT
Found at i:46316170 original size:20 final size:21
Alignment explanation
Indices: 46316135--46316174 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
46316125 TTGTATTAAT
*
46316135 AAATTTTCTGAACTTTTCATC
1 AAATTTTATGAACTTTTCATC
46316156 AAATTTTAT-AACTTTTCAT
1 AAATTTTATGAACTTTTCAT
46316175 TTTAGTCCCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.33, C:0.15, G:0.03, T:0.50
Consensus pattern (21 bp):
AAATTTTATGAACTTTTCATC
Found at i:46327078 original size:17 final size:17
Alignment explanation
Indices: 46327056--46327088 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
46327046 TTTTTATCAT
*
46327056 TTATCATTTATCGGGCA
1 TTATCATTGATCGGGCA
46327073 TTATCATTGATCGGGC
1 TTATCATTGATCGGGC
46327089 TTTGTCAGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.18, G:0.21, T:0.39
Consensus pattern (17 bp):
TTATCATTGATCGGGCA
Found at i:46327895 original size:15 final size:17
Alignment explanation
Indices: 46327869--46327902 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
46327859 TATTTAATTA
46327869 TTTATCATCTTTT-AAT
1 TTTATCATCTTTTCAAT
46327885 TTTATCA-CTTTTCAAT
1 TTTATCATCTTTTCAAT
46327901 TT
1 TT
46327903 AGTCCTTAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.24, C:0.15, G:0.00, T:0.62
Consensus pattern (17 bp):
TTTATCATCTTTTCAAT
Found at i:46328317 original size:14 final size:14
Alignment explanation
Indices: 46328298--46328326 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
46328288 CATCTATGGT
46328298 CTTATACCATATAC
1 CTTATACCATATAC
46328312 CTTATACCATATAC
1 CTTATACCATATAC
46328326 C
1 C
46328327 ATGCTACCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.31, G:0.00, T:0.34
Consensus pattern (14 bp):
CTTATACCATATAC
Found at i:46332360 original size:22 final size:22
Alignment explanation
Indices: 46332335--46332377 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
46332325 CACTAAGTGA
*
46332335 ACAGAACGGCTCAACGCCATAG
1 ACAGAACGGCTAAACGCCATAG
*
46332357 ACAGAACGGCTAAAGGCCATA
1 ACAGAACGGCTAAACGCCATA
46332378 AATATCGCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.40, C:0.28, G:0.23, T:0.09
Consensus pattern (22 bp):
ACAGAACGGCTAAACGCCATAG
Found at i:46332671 original size:27 final size:27
Alignment explanation
Indices: 46332623--46332675 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
46332613 CATTCTAACA
*
46332623 TACAGGGGTATTAAGGTCATTTTACAC
1 TACAAGGGTATTAAGGTCATTTTACAC
** *
46332650 TACAAGGGTATTTCGGTGATTTTACA
1 TACAAGGGTATTAAGGTCATTTTACA
46332676 AACCGGGGTC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.28, C:0.13, G:0.23, T:0.36
Consensus pattern (27 bp):
TACAAGGGTATTAAGGTCATTTTACAC
Found at i:46334365 original size:28 final size:28
Alignment explanation
Indices: 46334333--46334402 Score: 95
Period size: 28 Copynumber: 2.5 Consensus size: 28
46334323 TATGGTACTG
*
46334333 AGTGTATGAAATATTGAGAATGACACTT
1 AGTGTACGAAATATTGAGAATGACACTT
* *
46334361 AGTGTGCGAGATATTGAGAATGACACTT
1 AGTGTACGAAATATTGAGAATGACACTT
* *
46334389 AGTGTGCAAAATAT
1 AGTGTACGAAATAT
46334403 CGAATGATTC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.37, C:0.09, G:0.24, T:0.30
Consensus pattern (28 bp):
AGTGTACGAAATATTGAGAATGACACTT
Found at i:46334861 original size:127 final size:127
Alignment explanation
Indices: 46334635--46334889 Score: 501
Period size: 127 Copynumber: 2.0 Consensus size: 127
46334625 CCTTGTGTTA
46334635 AATCGGCAATTGAATTTGTTCAATGCATTAAGTTGGCCAGGTATGTGATATATTCTTATGCATGT
1 AATCGGCAATTGAATTTGTTCAATGCATTAAGTTGGCCAGGTATGTGATATATTCTTATGCATGT
46334700 TAGATCGATTGGAATTGAATCATGAGTGTGAAATGAGAAGCATAGGTGAAAATGACTATGTC
66 TAGATCGATTGGAATTGAATCATGAGTGTGAAATGAGAAGCATAGGTGAAAATGACTATGTC
46334762 AATCGGCAATTGAATTTGTTCAATGCATTAAGTTGGCCAGGTATGTGATATATTCTTATGCATGT
1 AATCGGCAATTGAATTTGTTCAATGCATTAAGTTGGCCAGGTATGTGATATATTCTTATGCATGT
*
46334827 TAGATCGATTGGAATTGAATCATGAGTGTGAAATGAGAAGCATAGGTGAAAATGCCTATGTC
66 TAGATCGATTGGAATTGAATCATGAGTGTGAAATGAGAAGCATAGGTGAAAATGACTATGTC
46334889 A
1 A
46334890 TATATGTGAG
Statistics
Matches: 127, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (127 bp):
AATCGGCAATTGAATTTGTTCAATGCATTAAGTTGGCCAGGTATGTGATATATTCTTATGCATGT
TAGATCGATTGGAATTGAATCATGAGTGTGAAATGAGAAGCATAGGTGAAAATGACTATGTC
Found at i:46336571 original size:57 final size:56
Alignment explanation
Indices: 46336502--46336746 Score: 321
Period size: 57 Copynumber: 4.3 Consensus size: 56
46336492 AAGTGAACAT
* *
46336502 AGGCACTGTGTGTGTGAGTTCCGTAACCGAGCACTGTGTGTGCAAGATCGATTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTATGTGCAAGATCG-TTGTTG
* * *
46336559 AGGCACTGTGTGTGCGATTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTATGTGCAAGATC-GTTGTTG
* * *
46336616 AGGCACTGTGTGTGCAAGTTCCGTAACCAAGCACTGTATGTGCAAGATATGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTATGTGCAAGAT-CGTTGTTG
* * * ** *
46336673 AGGCACTGTGTGTGCGAGTTCCGTAATCGAGCACTGTATGTGCGAGTTTCGTAATCG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTATGTGCAAG-ATCGTTGTTG
46336730 A-GCACTGTGTGTGCGAG
1 AGGCACTGTGTGTGCGAG
46336747 ATCGGTTGTT
Statistics
Matches: 167, Mismatches: 18, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
56 16 0.10
57 149 0.89
58 2 0.01
ACGTcount: A:0.20, C:0.18, G:0.33, T:0.29
Consensus pattern (56 bp):
AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTATGTGCAAGATCGTTGTTG
Found at i:46336726 original size:85 final size:85
Alignment explanation
Indices: 46336589--46336803 Score: 277
Period size: 85 Copynumber: 2.5 Consensus size: 85
46336579 CCGTAACCGA
* * ** *
46336589 GCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTGTGTGTGCAAGTTCCGTAACCAAGCACTGTA
1 GCACTGTGTGTGCGAGTTCCGTAATCGA-GCACTGTGTGTGCAAGTTCCGTAACCAAGCACTGTA
*
46336654 TGTGCAAGATATGTTGTTGAG
65 TGTGCAAGATAGGTTGTTGAG
* * * * * *
46336675 GCACTGTGTGTGCGAGTTCCGTAATCGAGCACTGTATGTGCGAGTTTCGTAATCGAGCACTGTGT
1 GCACTGTGTGTGCGAGTTCCGTAATCGAGCACTGTGTGTGCAAGTTCCGTAACCAAGCACTGTAT
* *
46336740 GTGCGAGATCGGTTGTTGAG
66 GTGCAAGATAGGTTGTTGAG
* *
46336760 GCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCAAG
1 GCACTGTGTGTGCGAGTTCCGTAATCGAGCACTGTGTGTGCAAG
46336804 ATCGGTTGTT
Statistics
Matches: 111, Mismatches: 18, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
85 88 0.79
86 23 0.21
ACGTcount: A:0.20, C:0.18, G:0.33, T:0.29
Consensus pattern (85 bp):
GCACTGTGTGTGCGAGTTCCGTAATCGAGCACTGTGTGTGCAAGTTCCGTAACCAAGCACTGTAT
GTGCAAGATAGGTTGTTGAG
Found at i:46336740 original size:142 final size:142
Alignment explanation
Indices: 46336561--46336819 Score: 439
Period size: 142 Copynumber: 1.8 Consensus size: 142
46336551 GATTGTTGAG
*
46336561 GCACTGTGTGTGCGATTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTGTG
1 GCACTGTATGTGCGATTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTGTG
*
46336626 TGTGCAAGTTCCGTAACCAAGCACTGTATGTGCAAGATATGTTGTTGAGGCACTGTGTGTGCGAG
66 TGTGCAAGTTCCGTAACCAAGCACTGTATGTGCAAGATAGGTTGTTGAGGCACTGTGTGTGCGAG
46336691 TTCCGTAATCGA
131 TTCCGTAATCGA
*
46336703 GCACTGTATGTGCGAGTTT-CGTAATCGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTGT
1 GCACTGTATGTGCGA-TTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTGT
* * * *
46336767 GTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTTGGGGCA
65 GTGTGCAAGTTCCGTAACCAAGCACTGTATGTGCAAGATAGGTTGTTGAGGCA
46336820 TTAAGTGTGT
Statistics
Matches: 109, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
142 106 0.97
143 3 0.03
ACGTcount: A:0.19, C:0.19, G:0.33, T:0.29
Consensus pattern (142 bp):
GCACTGTATGTGCGATTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTGTG
TGTGCAAGTTCCGTAACCAAGCACTGTATGTGCAAGATAGGTTGTTGAGGCACTGTGTGTGCGAG
TTCCGTAATCGA
Found at i:46336764 original size:57 final size:57
Alignment explanation
Indices: 46336675--46336819 Score: 184
Period size: 57 Copynumber: 2.6 Consensus size: 57
46336665 TGTTGTTGAG
* * ** * * * *
46336675 GCACTGTGTGTGCGAGTTCCGTAATCGA-GCACTGTATGTGCGAGTTTCGTAATCGA
1 GCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTGTATGTGCGAGTTCCGTAACCAA
*
46336731 GCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTGTGTGTGCGAGTTCCGTAACCAA
1 GCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTGTATGTGCGAGTTCCGTAACCAA
* *
46336788 GCACTGTGTGTGCAAGATCGGTTGTTGGGGCA
1 GCACTGTGTGTGCGAGATCGGTTGTTGAGGCA
46336820 TTAAGTGTGT
Statistics
Matches: 77, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
56 23 0.30
57 54 0.70
ACGTcount: A:0.18, C:0.19, G:0.34, T:0.29
Consensus pattern (57 bp):
GCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTGTATGTGCGAGTTCCGTAACCAA
Found at i:46341798 original size:28 final size:28
Alignment explanation
Indices: 46341766--46341835 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
46341756 TATGGTACTC
*
46341766 AGTGTACGAAATATTGAGAATGACACTT
1 AGTGTGCGAAATATTGAGAATGACACTT
* *
46341794 AGTGTGTGAGATATTGAGAATGACACTT
1 AGTGTGCGAAATATTGAGAATGACACTT
*
46341822 AGTGTGCAAAATAT
1 AGTGTGCGAAATAT
46341836 CGAATGATTC
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.37, C:0.09, G:0.24, T:0.30
Consensus pattern (28 bp):
AGTGTGCGAAATATTGAGAATGACACTT
Found at i:46342293 original size:127 final size:127
Alignment explanation
Indices: 46342067--46342321 Score: 510
Period size: 127 Copynumber: 2.0 Consensus size: 127
46342057 CCTTGTGTTA
46342067 AATCGGCAATTGAATTTGTTCAATGCATTAAGTTGGCCAGGTATGTGATATATTCTTATGCATGT
1 AATCGGCAATTGAATTTGTTCAATGCATTAAGTTGGCCAGGTATGTGATATATTCTTATGCATGT
46342132 TAGATCGATTGGAATTGAATCATGAGTGTGAAATGAGAAGCATAGGTGAAAATGCCTATGTC
66 TAGATCGATTGGAATTGAATCATGAGTGTGAAATGAGAAGCATAGGTGAAAATGCCTATGTC
46342194 AATCGGCAATTGAATTTGTTCAATGCATTAAGTTGGCCAGGTATGTGATATATTCTTATGCATGT
1 AATCGGCAATTGAATTTGTTCAATGCATTAAGTTGGCCAGGTATGTGATATATTCTTATGCATGT
46342259 TAGATCGATTGGAATTGAATCATGAGTGTGAAATGAGAAGCATAGGTGAAAATGCCTATGTC
66 TAGATCGATTGGAATTGAATCATGAGTGTGAAATGAGAAGCATAGGTGAAAATGCCTATGTC
46342321 A
1 A
46342322 TATATGTGAG
Statistics
Matches: 128, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 128 1.00
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (127 bp):
AATCGGCAATTGAATTTGTTCAATGCATTAAGTTGGCCAGGTATGTGATATATTCTTATGCATGT
TAGATCGATTGGAATTGAATCATGAGTGTGAAATGAGAAGCATAGGTGAAAATGCCTATGTC
Found at i:46349720 original size:17 final size:16
Alignment explanation
Indices: 46349712--46349756 Score: 74
Period size: 16 Copynumber: 2.9 Consensus size: 16
46349702 TTCATTTAAT
46349712 TATAATATTAATATAA
1 TATAATATTAATATAA
*
46349728 TATAATAATAATATAA
1 TATAATATTAATATAA
46349744 TATAATA-TAATAT
1 TATAATATTAATAT
46349757 TATTTTCTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
15 6 0.21
16 22 0.79
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
TATAATATTAATATAA
Found at i:46349730 original size:5 final size:5
Alignment explanation
Indices: 46349712--46349756 Score: 72
Period size: 5 Copynumber: 8.6 Consensus size: 5
46349702 TTCATTTAAT
46349712 TATAA TATTAA TATAA TATAA TAATAA TATAA TATAA TATAA TAT
1 TATAA TA-TAA TATAA TATAA T-ATAA TATAA TATAA TATAA TAT
46349757 TATTTTCTTA
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
5 28 0.74
6 10 0.26
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
TATAA
Found at i:46350713 original size:15 final size:15
Alignment explanation
Indices: 46350689--46350718 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
46350679 CCATGTAACT
46350689 TAAACCATTAACATA
1 TAAACCATTAACATA
*
46350704 TAAACTATTAACATA
1 TAAACCATTAACATA
46350719 ACAAACTTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.53, C:0.17, G:0.00, T:0.30
Consensus pattern (15 bp):
TAAACCATTAACATA
Found at i:46350810 original size:86 final size:86
Alignment explanation
Indices: 46350692--46350949 Score: 482
Period size: 86 Copynumber: 3.0 Consensus size: 86
46350682 TGTAACTTAA
46350692 ACCATTAACATATAAACTATTAACATAACAAACTTTATATACCAATATCTTGATCTATACTCAAC
1 ACCATTAACATATAAACTATTAACATAACAAACTTTATATACCAATATCTTGATCTATACTCAAC
46350757 CTTTTTTTATTAAAATTAGGT
66 CTTTTTTTATTAAAATTAGGT
46350778 ACCATTAACATATAAACTATTAACATAACAAACTTTATATACCAATATCTTGATCTATACTCAAC
1 ACCATTAACATATAAACTATTAACATAACAAACTTTATATACCAATATCTTGATCTATACTCAAC
46350843 CTTTTTTTATTAAAATTAGGT
66 CTTTTTTTATTAAAATTAGGT
**
46350864 ACCATTAACATATAAACTATTAACATAACAAACTTTATATACCAATATCTCAATCTATACTCAAC
1 ACCATTAACATATAAACTATTAACATAACAAACTTTATATACCAATATCTTGATCTATACTCAAC
*
46350929 C-TTTTTGATTAAAATTAGGT
66 CTTTTTTTATTAAAATTAGGT
46350949 A
1 A
46350950 TGTTCATCTA
Statistics
Matches: 169, Mismatches: 3, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
85 19 0.11
86 150 0.89
ACGTcount: A:0.41, C:0.18, G:0.03, T:0.37
Consensus pattern (86 bp):
ACCATTAACATATAAACTATTAACATAACAAACTTTATATACCAATATCTTGATCTATACTCAAC
CTTTTTTTATTAAAATTAGGT
Found at i:46360653 original size:99 final size:100
Alignment explanation
Indices: 46360475--46360712 Score: 320
Period size: 99 Copynumber: 2.4 Consensus size: 100
46360465 TAGTCAAAGC
* * * ** *
46360475 TATCTGGTACGCATAGTAGCCTGCA-TATAGTACTACACATGCAACCAATTATCTGGTACACGTA
1 TATCCGGTACACATAGTAGCCTGCACT-TAGTACTACACACGCAACCAACCATCTGATACACGTA
46360539 GTAGCCTGCACTTAGTACTACACACGTGA-C-CAAT
65 GTAGCCTGCACTTAGTACTACACACGTGATCACAAT
* **
46360573 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTA
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCAACC-AACCATCTGATACACGTA
*
46360638 GTAGCCTGCACTTAGTACTACACACGTGATCACAGT
65 GTAGCCTGCACTTAGTACTACACACGTGATCACAAT
* * *
46360674 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACA
46360713 TGCGACCTCA
Statistics
Matches: 122, Mismatches: 14, Indels: 5
0.87 0.10 0.04
Matches are distributed among these distances:
98 38 0.31
99 45 0.37
100 1 0.01
101 38 0.31
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (100 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCAACCAACCATCTGATACACGTAG
TAGCCTGCACTTAGTACTACACACGTGATCACAAT
Found at i:46360655 original size:50 final size:49
Alignment explanation
Indices: 46360475--46360712 Score: 307
Period size: 49 Copynumber: 4.8 Consensus size: 49
46360465 TAGTCAAAGC
* * * **
46360475 TATCTGGTACGCATAGTAGCCTGCA-TATAGTACTACACATGCAACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACT-TAGTACTACACACGTGACCAAT
46360524 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
46360573 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * *
46360623 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAAT
* * * *
46360674 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
46360713 TGCGACCTCA
Statistics
Matches: 167, Mismatches: 18, Indels: 6
0.87 0.09 0.03
Matches are distributed among these distances:
49 87 0.52
50 44 0.26
51 35 0.21
52 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:46361050 original size:14 final size:16
Alignment explanation
Indices: 46361020--46361057 Score: 53
Period size: 14 Copynumber: 2.5 Consensus size: 16
46361010 ATTTACATAA
46361020 CATATATCACATATTT
1 CATATATCACATATTT
46361036 CATATATCAC-T-TTT
1 CATATATCACATATTT
*
46361050 CATGTATC
1 CATATATC
46361058 TTCATTTTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 10 0.48
15 1 0.05
16 10 0.48
ACGTcount: A:0.32, C:0.21, G:0.03, T:0.45
Consensus pattern (16 bp):
CATATATCACATATTT
Found at i:46368829 original size:25 final size:24
Alignment explanation
Indices: 46368788--46368870 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 24
46368778 CCTTGCAATA
* *
46368788 CACCTCACAATCTCACCTCGTTGTAC
1 CACCTCACAA-CACACCTC-TAGTAC
* *
46368814 CACCTCGCAACACACCTCACAGTAC
1 CACCTCACAACACACCTC-TAGTAC
*
46368839 CACCTCACAACACACCTCTCGCTAC
1 CACCTCACAACACACCTCTAG-TAC
46368864 CACCTCA
1 CACCTCA
46368871 TGATCTCTGT
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
24 1 0.02
25 38 0.79
26 9 0.19
ACGTcount: A:0.28, C:0.48, G:0.06, T:0.18
Consensus pattern (24 bp):
CACCTCACAACACACCTCTAGTAC
Found at i:46369377 original size:29 final size:31
Alignment explanation
Indices: 46369329--46369392 Score: 80
Period size: 29 Copynumber: 2.1 Consensus size: 31
46369319 TTTATAGTTA
*
46369329 TTTAATTAGATAATTATTATT-TATTTAATAT
1 TTTAATAAGATAATTATTATTAT-TTTAATAT
*
46369360 TTTAATAAGAT-ATT-TTATTATTTTATTAT
1 TTTAATAAGATAATTATTATTATTTTAATAT
46369389 TTTA
1 TTTA
46369393 TTTAGTCTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 16 0.53
30 4 0.13
31 10 0.33
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (31 bp):
TTTAATAAGATAATTATTATTATTTTAATAT
Found at i:46369381 original size:8 final size:8
Alignment explanation
Indices: 46369370--46369394 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
46369360 TTTAATAAGA
46369370 TATTTTAT
1 TATTTTAT
46369378 TATTTTAT
1 TATTTTAT
46369386 TATTTTAT
1 TATTTTAT
46369394 T
1 T
46369395 TAGTCTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:46374127 original size:21 final size:22
Alignment explanation
Indices: 46374094--46374134 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
46374084 TTCATTTATG
*
46374094 TTTCATTGGCACATA-ATCATA
1 TTTCATTGCCACATACATCATA
*
46374115 TTTCATTTCCACATACATCA
1 TTTCATTGCCACATACATCA
46374135 CAATACATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.32, C:0.24, G:0.05, T:0.39
Consensus pattern (22 bp):
TTTCATTGCCACATACATCATA
Found at i:46374583 original size:28 final size:28
Alignment explanation
Indices: 46374550--46374612 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
46374540 TCGACATTTT
46374550 GCACACTAAGTGTCATTCTAAATATCTC
1 GCACACTAAGTGTCATTCTAAATATCTC
* *
46374578 GCACACTAAGTGTCATTCTCAATATTTC
1 GCACACTAAGTGTCATTCTAAATATCTC
*
46374606 GTACACT
1 GCACACT
46374613 GAGTCCCATA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.30, C:0.25, G:0.11, T:0.33
Consensus pattern (28 bp):
GCACACTAAGTGTCATTCTAAATATCTC
Found at i:46379058 original size:49 final size:49
Alignment explanation
Indices: 46378919--46379580 Score: 1107
Period size: 49 Copynumber: 13.8 Consensus size: 49
46378909 TTAGGATTCT
* *
46378919 ATGTGATGGATGTGAACA-TG--TATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATATGTGATAAGGCCTAATGGCCA
*
46378966 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCA
46379013 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCA
*
46379062 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCA
*
46379111 ATATGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCA
*
46379160 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCA
*
46379209 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCA
46379256 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCA
46379305 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCA
*
46379354 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCA
* *
46379403 ATATGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCA
46379450 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCA
* *
46379499 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCA
*
46379546 ATGTGATGAATGTGAAGGTGTATA-A-ATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
46379581 TCCCGAAGGG
Statistics
Matches: 585, Mismatches: 21, Indels: 18
0.94 0.03 0.03
Matches are distributed among these distances:
46 1 0.00
47 205 0.35
48 1 0.00
49 378 0.65
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (49 bp):
ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCA
Found at i:46379112 original size:145 final size:143
Alignment explanation
Indices: 46378919--46379580 Score: 1137
Period size: 145 Copynumber: 4.6 Consensus size: 143
46378909 TTAGGATTCT
*
46378919 ATGTGATGGATGTGAACA-TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
46378983 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATA
65 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATA
46379048 AGGCCTAATGGCCA
130 AGGCCTAATGGCCA
*
46379062 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATATGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
46379127 AGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTG
64 AGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTG
*
46379192 ATAAGGCCTAATGGCCG
127 ATAAGGCCTAATGGCCA
* *
46379209 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
46379274 TGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGAT
66 TG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGAT
46379339 AAGGCCTAATGGCCA
129 AAGGCCTAATGGCCA
*
46379354 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATATGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
46379419 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGAT
64 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGAT
46379484 AAGGCCTAATGGCCA
129 AAGGCCTAATGGCCA
* *
46379499 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAGG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
46379564 TGTATAAATGTGATAAG
66 TGTATATATGTGATAAG
46379581 TCCCGAAGGG
Statistics
Matches: 496, Mismatches: 16, Indels: 14
0.94 0.03 0.03
Matches are distributed among these distances:
142 1 0.00
143 75 0.15
145 282 0.57
147 138 0.28
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (143 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAA
GGCCTAATGGCCA
Done.