Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 145 of 356
Found at i:46653913 original size:21 final size:21
Alignment explanation
Indices: 46653887--46653926 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
46653877 CAGTGTGGCA
*
46653887 AGTTAACTAGCCATATCAGCT
1 AGTTAACTAGCCACATCAGCT
*
46653908 AGTTAACTTGCCACATCAG
1 AGTTAACTAGCCACATCAG
46653927 TGGTCCTGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.28
Consensus pattern (21 bp):
AGTTAACTAGCCACATCAGCT
Found at i:46657322 original size:40 final size:40
Alignment explanation
Indices: 46657264--46657339 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 40
46657254 ACACATCATG
*
46657264 TGGGGACAGAATCGACCCACCCAACCCTACACACCAAGTA
1 TGGGGACAGAATCAACCCACCCAACCCTACACACCAAGTA
* * *
46657304 TGGGGATATAATCAACCCATCCAACCCTACACACCA
1 TGGGGACAGAATCAACCCACCCAACCCTACACACCA
46657340 CAAGGTACCA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.36, C:0.37, G:0.14, T:0.13
Consensus pattern (40 bp):
TGGGGACAGAATCAACCCACCCAACCCTACACACCAAGTA
Found at i:46660562 original size:14 final size:14
Alignment explanation
Indices: 46660543--46660577 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
46660533 AGGTATTAAT
*
46660543 TTATTTTTCAATAA
1 TTATTTTTCAAAAA
*
46660557 TTATTTTTTAAAAA
1 TTATTTTTCAAAAA
46660571 TTATTTT
1 TTATTTT
46660578 CAGTCAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (14 bp):
TTATTTTTCAAAAA
Found at i:46664774 original size:26 final size:26
Alignment explanation
Indices: 46664695--46664776 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
46664685 TGGTACAAAT
46664695 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
46664721 TAATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
46664747 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
46664773 TGAT
1 TGAT
46664777 GGGCATTTCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:46669396 original size:16 final size:16
Alignment explanation
Indices: 46669375--46669410 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
46669365 TAACTCAGGA
46669375 GCTGCAGGAGTACATG
1 GCTGCAGGAGTACATG
46669391 GCTGCAGGAGTACATG
1 GCTGCAGGAGTACATG
46669407 GCTG
1 GCTG
46669411 TGATTTCTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.22, C:0.19, G:0.39, T:0.19
Consensus pattern (16 bp):
GCTGCAGGAGTACATG
Found at i:46670061 original size:18 final size:19
Alignment explanation
Indices: 46670033--46670071 Score: 71
Period size: 18 Copynumber: 2.1 Consensus size: 19
46670023 TTAATTAAAC
46670033 TAAATTTATATGTAATAAT
1 TAAATTTATATGTAATAAT
46670052 TAAA-TTATATGTAATAAT
1 TAAATTTATATGTAATAAT
46670070 TA
1 TA
46670072 TTATTTTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (19 bp):
TAAATTTATATGTAATAAT
Found at i:46670145 original size:28 final size:27
Alignment explanation
Indices: 46670114--46670189 Score: 68
Period size: 28 Copynumber: 2.8 Consensus size: 27
46670104 ATTTATTAGT
46670114 TATAATTATTTTAAATTTTATTAAATA
1 TATAATTATTTTAAATTTTATTAAATA
* * *
46670141 -ATATATT-TTAATTAAAATATATTTAATA
1 TATA-ATTATT--TTAAATTTTATTAAATA
*
46670169 T-TAATTATTTCAAATTTTATT
1 TATAATTATTTTAAATTTTATT
46670190 TTATAGTATC
Statistics
Matches: 38, Mismatches: 6, Indels: 11
0.69 0.11 0.20
Matches are distributed among these distances:
26 14 0.37
27 6 0.16
28 18 0.47
ACGTcount: A:0.43, C:0.01, G:0.00, T:0.55
Consensus pattern (27 bp):
TATAATTATTTTAAATTTTATTAAATA
Found at i:46670258 original size:120 final size:120
Alignment explanation
Indices: 46670127--46670416 Score: 494
Period size: 120 Copynumber: 2.4 Consensus size: 120
46670117 AATTATTTTA
*
46670127 AATTTTATTAAATAATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTT-TATTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTATTT-AAATTTATATTT
* *
46670191 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGACTATTAATTATTAAG
65 TACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* *
46670247 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATT-ATTATTTTAATTTATATTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAAT-ATTAATTATTTAAATTTATATTT
46670311 TACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 TACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
46670367 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTAT
46670417 GTTTAAATAT
Statistics
Matches: 160, Mismatches: 7, Indels: 6
0.92 0.04 0.03
Matches are distributed among these distances:
119 7 0.04
120 150 0.94
121 3 0.02
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTATTTAAATTTATATTTT
ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:46670309 original size:15 final size:14
Alignment explanation
Indices: 46670257--46670312 Score: 55
Period size: 15 Copynumber: 4.1 Consensus size: 14
46670247 AATTTTATTA
46670257 AATTATA-TATTTT
1 AATTATATTATTTT
*
46670270 AATTATAATATATTT
1 AATTATATTAT-TTT
*
46670285 AATAATTATTATTTT
1 AATTA-TATTATTTT
46670300 AATT-TA-TATTTT
1 AATTATATTATTTT
46670312 A
1 A
46670313 CAGTATCATA
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
12 7 0.19
13 9 0.24
14 3 0.08
15 13 0.35
16 5 0.14
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
AATTATATTATTTT
Found at i:46670373 original size:61 final size:61
Alignment explanation
Indices: 46670187--46670374 Score: 185
Period size: 61 Copynumber: 3.1 Consensus size: 61
46670177 TTCAAATTTT
*
46670187 ATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGACTATTAATTATTAAGA
1 ATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGA
* * * * * * *
46670248 ATTTTATTA-AATTATATATT-TTAATT-A-T-AATAT-ATTTAATAATTATT-ATT-TTAATTT
1 ATTTTA-TAGTATCATATATTATGATTTGAGTAAAT-TCATATAAGAA-TATTAATTATTAA--G
46670305 A
61 A
*
46670306 TATTTTACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGA
1 -ATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGA
46670368 ATTTTAT
1 ATTTTAT
46670375 TAAATTATAT
Statistics
Matches: 96, Mismatches: 17, Indels: 28
0.68 0.12 0.20
Matches are distributed among these distances:
56 4 0.04
57 12 0.12
58 8 0.08
59 16 0.17
60 8 0.08
61 22 0.23
62 9 0.09
63 13 0.14
64 4 0.04
ACGTcount: A:0.41, C:0.03, G:0.06, T:0.49
Consensus pattern (61 bp):
ATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGA
Found at i:46670396 original size:18 final size:17
Alignment explanation
Indices: 46670368--46670402 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
46670358 ATTATTAAGA
*
46670368 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
46670385 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
46670403 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:46670516 original size:147 final size:149
Alignment explanation
Indices: 46670356--46670630 Score: 500
Period size: 147 Copynumber: 1.9 Consensus size: 149
46670346 ATAAGAATAT
* *
46670356 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATACTTTAATTAAAATATATTAAATAATAATTATGTTT
*
46670421 AAATATGATTAAATTATTTATTATTGAT-ATTAATAATCTTATTAAAATTTAAATAA-AATAATT
66 AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAATT
46670484 TACCAAAACAAATTTCTGC
131 TACCAAAACAAATTTCTGC
46670503 TAATTATTAAGAATTTTATTAAATTATATACTTTAATTAAAATATATTAAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATACTTTAATTAAAATATATTAAATAATAATTATGTTT
*
46670568 AAATATGATTAAATTATTTATTTTTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
66 AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
46670631 CAATAATCAT
Statistics
Matches: 122, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
147 90 0.74
148 27 0.22
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.46
Consensus pattern (149 bp):
TAATTATTAAGAATTTTATTAAATTATATACTTTAATTAAAATATATTAAATAATAATTATGTTT
AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAATT
TACCAAAACAAATTTCTGC
Found at i:46670760 original size:44 final size:45
Alignment explanation
Indices: 46670711--46670805 Score: 129
Period size: 45 Copynumber: 2.1 Consensus size: 45
46670701 TTACACCTCT
* * *
46670711 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACATCTATTCC
** *
46670755 ATTACATTCAACCAAACAGTTGATTTGCTATTACACATCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACATCTATTCC
46670800 ATTACA
1 ATTACA
46670806 CCTCTAATCC
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 18 0.41
45 26 0.59
ACGTcount: A:0.34, C:0.26, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACATCTATTCC
Found at i:46670805 original size:16 final size:16
Alignment explanation
Indices: 46670786--46670853 Score: 109
Period size: 16 Copynumber: 4.2 Consensus size: 16
46670776 GATTTGCTAT
* * *
46670786 TACACATCTATTCCAT
1 TACACCTCTAATCCAA
46670802 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
46670818 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
46670834 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
46670850 TACA
1 TACA
46670854 GCGAACCAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.37, C:0.35, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:46676849 original size:3 final size:3
Alignment explanation
Indices: 46676843--46676907 Score: 130
Period size: 3 Copynumber: 21.7 Consensus size: 3
46676833 AAAAAAACCT
46676843 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
46676891 AGA AGA AGA AGA AGA AG
1 AGA AGA AGA AGA AGA AG
46676908 TATCCGTTTC
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 62 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:46677837 original size:574 final size:567
Alignment explanation
Indices: 46676899--46677969 Score: 1836
Period size: 574 Copynumber: 1.9 Consensus size: 567
46676889 GAAGAAGAAG
* * *
46676899 AAGAAGAAGTATCCGTTTCCACGGATTGACGATCTATTTGACCAACTAAAAAGCGCTACAGTGTT
1 AAGAAGAAGTATCCATTGCCACAGATTGACGATCTATTTGACCAACTAAAAAGCGCTACAGTGTT
*
46676964 TTCAAAGATAGATTTGAGATCGGGCTACTATCAGTTGCGAGTTAAAGACTTCGATGTGCCTAAAT
66 TTCAAAGATAGATTTGAGATCGGGCTACTATCAGTTGCGAGTTAAAGACTTCGATGTGCCTAAAC
*
46677029 TGCTTTCCGAATGAGGCACAGACACTATGAGTTTCTGGTTATGCCATTCGGACTTACTAATGCAC
131 TGCTTTCCGAACGAGGCACAGACACTATGAGTTTCTGGTTATGCCATTCGGACTTACTAATGCAC
* * * *
46677094 CTGCTATTTTCATGGATTTGATGAATCGGATCTTCAGACCGTATTCATCGCTAGATTAGGGTTAT
196 CTACTATTTTCATGGATTTGATGAATCGGATCTTCAGACCGTATCCATCACTAGATTAAGGTTAT
*
46677159 GAGGCATTACTGATCATAAGCACAATTCCAATCATTAATATATACACATGAACGAGTCTCAGAAA
261 GAGGCATTACCGATCATAAGCACAATTCCAATCATTAATATATACACATGAACGAGTCTCAGAAA
46677224 TCAATCAAAATTAATTTCATGAACAAATACAACGCTTAAATTTGAAGCATTTCATATCATACATA
326 TCAATCAAAATTAATTTCATGAACAAATACAACGCTTAAATTTGAAGCATTT-A-AT-AT-C--A
46677289 TACATATACATATAGTCAAATTATTCACATACATTAATATAAATTATAATATTCGAATATTATAG
385 TACATATACATATAGTCAAATTATTCACATACATTAATATAAATTATAATATTCGAATATTATAG
46677354 CATTTTTGGGCTTTAACAAAGATATGATATAAACCAAAATAACTATTCGAATATTAATATGATCG
450 CATTTTTGGGCTTTAACAAAGATATGATATAAACCAAAATAACTATTCGAATATTAATATGATCG
46677419 GTAATGCCTCATAACCCTAATCCGATGATGGACAACTTAATAAGGTGACTATA
515 GTAATGCCTCATAACCCTAATCCGATGATGGACAACTTAATAAGGTGACTATA
* * * * *
46677472 AAGAATAAGTATCCATTGCCACAGATTGACGATCTGTTTGACCAACTGAAAGGGGCTACAGTGTT
1 AAGAAGAAGTATCCATTGCCACAGATTGACGATCTATTTGACCAACTAAAAAGCGCTACAGTGTT
46677537 TTCAAAGATAGATTTGAGATCGGGCTACTATCAGTTGCGAGTTAAAGACTTCGATGTGCCTAAGA
66 TTCAAAGATAGATTTGAGATCGGGCTACTATCAGTTGCGAGTTAAAGACTTCGATGTGCCTAA-A
* * *
46677602 CTGCTTTCTGAACGAGGTACGGACACTATGAGTTTCTGGTTATGCCATTCGGACTTACTAATGCA
130 CTGCTTTCCGAACGAGGCACAGACACTATGAGTTTCTGGTTATGCCATTCGGACTTACTAATGCA
46677667 CCTACTATTTTCATGGATTTGATGAATCGGATCTTCAGACCGTATCCATCACTAGATTAAGGTTA
195 CCTACTATTTTCATGGATTTGATGAATCGGATCTTCAGACCGTATCCATCACTAGATTAAGGTTA
* *
46677732 TGAGGCATTACCGATCATAAGCACAATTCCAATCATTAATATATACACATGAACGAGTCTTATAA
260 TGAGGCATTACCGATCATAAGCACAATTCCAATCATTAATATATACACATGAACGAGTCTCAGAA
*
46677797 ATCAGTCAAAATTAATTTCATGAACAAATACAACGCTTAAATTTGAAGCATTTAATATCATACAT
325 ATCAATCAAAATTAATTTCATGAACAAATACAACGCTTAAATTTGAAGCATTTAATATCATACAT
* * *
46677862 ATACATATAGTCAAATTATTCACATGCATTAATATGAATTATAATATTTGAATATTATAGCATTT
390 ATACATATAGTCAAATTATTCACATACATTAATATAAATTATAATATTCGAATATTATAGCATTT
* * *
46677927 TTGGGCTTTAACAAAGATATTATATAAACTAAAATAATTATTC
455 TTGGGCTTTAACAAAGATATGATATAAACCAAAATAACTATTC
46677970 ATTTAATATA
Statistics
Matches: 470, Mismatches: 27, Indels: 7
0.93 0.05 0.01
Matches are distributed among these distances:
568 108 0.23
570 1 0.00
571 2 0.00
572 2 0.00
573 121 0.26
574 236 0.50
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32
Consensus pattern (567 bp):
AAGAAGAAGTATCCATTGCCACAGATTGACGATCTATTTGACCAACTAAAAAGCGCTACAGTGTT
TTCAAAGATAGATTTGAGATCGGGCTACTATCAGTTGCGAGTTAAAGACTTCGATGTGCCTAAAC
TGCTTTCCGAACGAGGCACAGACACTATGAGTTTCTGGTTATGCCATTCGGACTTACTAATGCAC
CTACTATTTTCATGGATTTGATGAATCGGATCTTCAGACCGTATCCATCACTAGATTAAGGTTAT
GAGGCATTACCGATCATAAGCACAATTCCAATCATTAATATATACACATGAACGAGTCTCAGAAA
TCAATCAAAATTAATTTCATGAACAAATACAACGCTTAAATTTGAAGCATTTAATATCATACATA
TACATATAGTCAAATTATTCACATACATTAATATAAATTATAATATTCGAATATTATAGCATTTT
TGGGCTTTAACAAAGATATGATATAAACCAAAATAACTATTCGAATATTAATATGATCGGTAATG
CCTCATAACCCTAATCCGATGATGGACAACTTAATAAGGTGACTATA
Found at i:46678827 original size:21 final size:21
Alignment explanation
Indices: 46678781--46678827 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
46678771 ATATAAACAC
*
46678781 ATTCACATTCCAACATATAAA
1 ATTCACATTACAACATATAAA
* *
46678802 GTTCACATTATAA-ATATAAA
1 ATTCACATTACAACATATAAA
46678822 TATTCA
1 -ATTCA
46678828 TTCATAAAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
20 7 0.33
21 14 0.67
ACGTcount: A:0.47, C:0.17, G:0.02, T:0.34
Consensus pattern (21 bp):
ATTCACATTACAACATATAAA
Found at i:46681095 original size:27 final size:27
Alignment explanation
Indices: 46681035--46681098 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 27
46681025 GGGCATAATT
* * *
46681035 GTCATTCTACCATAAAGGGGTATTATG
1 GTCATTTTACCATAAAGGGGCATTACG
* *
46681062 GTCATTTTACCCTATAGGGGCATTACG
1 GTCATTTTACCATAAAGGGGCATTACG
46681089 GTCATTTTAC
1 GTCATTTTAC
46681099 ACTAAAAGGA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCATAAAGGGGCATTACG
Found at i:46684501 original size:48 final size:48
Alignment explanation
Indices: 46684448--46684580 Score: 144
Period size: 48 Copynumber: 2.8 Consensus size: 48
46684438 ATTTATCATG
*
46684448 TAGGTTCAACCCTAACGGGTAACTAGGAACTATTACTCATTATTCGTA
1 TAGGTTTAACCCTAACGGGTAACTAGGAACTATTACTCATTATTCGTA
* * * * * *
46684496 TAGGTTTAACCTTGACTGGTAACTAGGCAA-TATTATTCATTATTTGTG
1 TAGGTTTAACCCTAACGGGTAACTAGG-AACTATTACTCATTATTCGTA
* * *
46684544 TAGGTTTAACCCAAATGGGTAACCA-GACACTATTACT
1 TAGGTTTAACCCTAACGGGTAACTAGGA-ACTATTACT
46684581 TTCAACTGTG
Statistics
Matches: 68, Mismatches: 14, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
46 1 0.01
47 2 0.03
48 63 0.93
49 2 0.03
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Consensus pattern (48 bp):
TAGGTTTAACCCTAACGGGTAACTAGGAACTATTACTCATTATTCGTA
Found at i:46687151 original size:48 final size:48
Alignment explanation
Indices: 46687017--46687152 Score: 184
Period size: 48 Copynumber: 2.8 Consensus size: 48
46687007 GCTATTTATC
* * *
46687017 GTGTAGGTTCAACCCTAACGGGTAACCAGGA-ACTATTACTCATTATTT
1 GTGTAGGTTTAACCCTAATGGGTAACCA-GACACTATTATTCATTATTT
* * * *
46687065 GTGTAGGTTTAACCTTAATTGGTAACCAGGCAATATTATTCATTATTT
1 GTGTAGGTTTAACCCTAATGGGTAACCAGACACTATTATTCATTATTT
*
46687113 GTGTAGGTTTAACCCAAATGGGTAACCAGACACTATTATT
1 GTGTAGGTTTAACCCTAATGGGTAACCAGACACTATTATT
46687153 TTCACCTGTG
Statistics
Matches: 75, Mismatches: 12, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
47 1 0.01
48 74 0.99
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (48 bp):
GTGTAGGTTTAACCCTAATGGGTAACCAGACACTATTATTCATTATTT
Found at i:46693490 original size:24 final size:24
Alignment explanation
Indices: 46693458--46693504 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
46693448 AAGAAGTATG
46693458 TAGATATTTTTGGATGATTCATCT
1 TAGATATTTTTGGATGATTCATCT
*
46693482 TAGATATTTTTGGATTATTCATC
1 TAGATATTTTTGGATGATTCATC
46693505 CATGGAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.26, C:0.09, G:0.15, T:0.51
Consensus pattern (24 bp):
TAGATATTTTTGGATGATTCATCT
Found at i:46695525 original size:2 final size:2
Alignment explanation
Indices: 46695518--46695550 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
46695508 CCTATGCCGG
46695518 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
46695551 GGTAAATCAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:46701740 original size:18 final size:15
Alignment explanation
Indices: 46701698--46701735 Score: 76
Period size: 15 Copynumber: 2.5 Consensus size: 15
46701688 TAAGTAGAAT
46701698 TATGCATGATGAAAG
1 TATGCATGATGAAAG
46701713 TATGCATGATGAAAG
1 TATGCATGATGAAAG
46701728 TATGCATG
1 TATGCATG
46701736 TTGATACTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.37, C:0.08, G:0.26, T:0.29
Consensus pattern (15 bp):
TATGCATGATGAAAG
Found at i:46716119 original size:43 final size:43
Alignment explanation
Indices: 46715964--46716120 Score: 147
Period size: 43 Copynumber: 3.7 Consensus size: 43
46715954 TGTGTTTTCG
* * * *
46715964 TGTAAGACCATGCCCGGGACATTGGCATCGACT-TATGATTTACG
1 TGTAAGACCATGTCTGGGACATTGGCATCGA-TATTTGA-TTACA
* * * * *
46716008 TGTAAGACGATGTATGGGACATCGGCATCG-TATTTTATTTCA
1 TGTAAGACCATGTCTGGGACATTGGCATCGATATTTGATTACA
* * * *
46716050 TGTTAGACCTTGTCTAGGACAGTGGCATCGATATTTGATTACA
1 TGTAAGACCATGTCTGGGACATTGGCATCGATATTTGATTACA
* *
46716093 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCATGTCTGGGACATTGGCAT
46716121 TGTACGAGTT
Statistics
Matches: 87, Mismatches: 24, Indels: 5
0.75 0.21 0.04
Matches are distributed among these distances:
42 27 0.31
43 35 0.40
44 25 0.29
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.31
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGATATTTGATTACA
Found at i:46716710 original size:7 final size:7
Alignment explanation
Indices: 46716698--46716722 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
46716688 GGTTTGATTT
46716698 TGATATA
1 TGATATA
46716705 TGATATA
1 TGATATA
46716712 TGATATA
1 TGATATA
46716719 TGAT
1 TGAT
46716723 GCAAAAATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.16, T:0.44
Consensus pattern (7 bp):
TGATATA
Found at i:46731587 original size:14 final size:13
Alignment explanation
Indices: 46731561--46731599 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 13
46731551 GTTTAAAGAC
*
46731561 TTTTATTTATTAT
1 TTTTATTTTTTAT
46731574 TTTTATGTTTTTAT
1 TTTTAT-TTTTTAT
46731588 TTTTATCTTTTT
1 TTTTAT-TTTTT
46731600 TAAAACTACT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 6 0.26
14 17 0.74
ACGTcount: A:0.15, C:0.03, G:0.03, T:0.79
Consensus pattern (13 bp):
TTTTATTTTTTAT
Found at i:46737407 original size:43 final size:43
Alignment explanation
Indices: 46737312--46737433 Score: 131
Period size: 43 Copynumber: 2.8 Consensus size: 43
46737302 GGGGAGATGT
* * * *
46737312 GATTACATGTAAGACCATGTTTGGGACATTGGCATTGTATTGA
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAATGA
* *
46737355 GATTACGTGTAAGACCATGTCTGGGAAATTGGCATCGTTAAT-C
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCG-TAATGA
* * *
46737398 GATTTCGTGTAAGAGCC-TGTCTAGGACAGTGGCATC
1 GATTACGTGTAAGA-CCATGTCTGGGACATTGGCATC
46737434 AATATGTGAT
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
43 62 0.93
44 5 0.07
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAATGA
Found at i:46743133 original size:7 final size:8
Alignment explanation
Indices: 46743119--46743145 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
46743109 ATTAAATTTA
46743119 ATTTTTTT
1 ATTTTTTT
46743127 ATTTTTTT
1 ATTTTTTT
46743135 ATTTTTTT
1 ATTTTTTT
46743143 ATT
1 ATT
46743146 GTGTAAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (8 bp):
ATTTTTTT
Found at i:46754354 original size:35 final size:35
Alignment explanation
Indices: 46754315--46754510 Score: 182
Period size: 35 Copynumber: 5.6 Consensus size: 35
46754305 CATGATAAGA
* * *
46754315 TGTGAAATGTAGGTATGGTATCATCGATACTCAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACTGAGT
*
46754350 TGTGAAACGTAGGTATGGTGTCATCCATACTGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACTGAGT
* * * *
46754385 TGTGAAACATAGGTATGATATTAACCATACTGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACTGAGT
* * **
46754420 TATGAAACGTAGGTATGGTATTATCCATTTTGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACTGAGT
** * * *
46754455 TAAGAAATAG-AGGTATGGCAT-TTCCCATA-TCGAGT
1 TGTGAAA-CGTAGGTATGGTATCAT-CCATACT-GAGT
*
46754490 TGTGAAATGTAGGTATGGTAT
1 TGTGAAACGTAGGTATGGTAT
46754511 TTCAATGAGG
Statistics
Matches: 133, Mismatches: 24, Indels: 8
0.81 0.15 0.05
Matches are distributed among these distances:
34 3 0.02
35 129 0.97
36 1 0.01
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.34
Consensus pattern (35 bp):
TGTGAAACGTAGGTATGGTATCATCCATACTGAGT
Found at i:46774069 original size:40 final size:40
Alignment explanation
Indices: 46774014--46774231 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
46774004 CGGATGATAA
* *
46774014 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
46774054 CCGGGCTAAGTCCCGAAGACATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
46774094 CCAGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
46774134 CCGGGCTAGGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
46774174 CTGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
46774214 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
46774232 TACTTGGTTT
Statistics
Matches: 158, Mismatches: 18, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 17 0.11
40 140 0.89
41 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:46776164 original size:48 final size:47
Alignment explanation
Indices: 46776067--46776435 Score: 220
Period size: 47 Copynumber: 7.9 Consensus size: 47
46776057 TTAATTGTGT
**
46776067 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATT--TTGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-G--ACATTAGACGAGA
*
46776113 GCTAGTGTAAAACCATGTCTGGGACATGGCATCGACATTGAGACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATT-AGACGAGA
** *
46776161 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCG-GTTTCAAGATGTA-A
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATT--AGACG-AGA
* *
46776207 GCAAGTGTAACA-CATGTCTGGGACAT-GCATCG--ATT--ACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTAGACGAGA
* * * * *
46776248 TGTGTCAGTGTAAGACCATGTTTGGGACATGGCATCGGCACGTATAG-CTA-T
1 -G-CT-AGTGTAAGACCATGTCTGGGACATGGCATC-G-ACAT-TAGACGAGA
* * * * *
46776299 GTTAGTGTAAGACCACGTATGGGACATGGCATCGACACGGATATG-TGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACA---TTA-GACGAGA
* *
46776349 G-TCAGTGTAAGACCATGTCTGGGACATGGCATCGA-TTTA-ATGGATGA
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGACATTAGA-CGA-GA
* *
46776396 GCTGGTGTAAGACCATGTCTGGGACATGGCATTGACATTA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTA
46776436 TACCCTATGT
Statistics
Matches: 257, Mismatches: 35, Indels: 60
0.73 0.10 0.17
Matches are distributed among these distances:
40 1 0.00
41 3 0.01
42 1 0.00
44 8 0.03
45 22 0.09
46 63 0.25
47 65 0.25
48 54 0.21
49 4 0.02
50 33 0.13
51 1 0.00
52 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.25
Consensus pattern (47 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTAGACGAGA
Found at i:46776216 original size:46 final size:46
Alignment explanation
Indices: 46776067--46776285 Score: 189
Period size: 46 Copynumber: 4.7 Consensus size: 46
46776057 TTAATTGTGT
** ***
46776067 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTTTGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGTTACAAGATGAGA
* *
46776113 GCTAGTGTAAAACCATGTCTGGGACATGGCATC-G--ACATTGAGACGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGTTACA---AGATGAGA
*
46776161 GCTAGTGTAAGACATGTCTGGGACATGCATCGGTTTCAAGATGTA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGTTACAAGATG-AGA
* * * * *
46776207 GCAAGTGTAACACATGTCTGGGACATGCATCGATTACGAGATGTG-
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGTTACAAGATGAGA
* *
46776252 TC-AGTGTAAGACCATGTTTGGGACATGGCATCGG
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGG
46776286 CACGTATAGC
Statistics
Matches: 143, Mismatches: 18, Indels: 24
0.77 0.10 0.13
Matches are distributed among these distances:
44 8 0.06
45 17 0.12
46 65 0.45
47 31 0.22
48 20 0.14
49 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGTTACAAGATGAGA
Found at i:46783606 original size:12 final size:12
Alignment explanation
Indices: 46783589--46783619 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
46783579 TAGCACATTT
46783589 TATATTAAAGAG
1 TATATTAAAGAG
46783601 TATATTAAAGAG
1 TATATTAAAGAG
46783613 TATATTA
1 TATATTA
46783620 TGATAATACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.13, T:0.39
Consensus pattern (12 bp):
TATATTAAAGAG
Found at i:46785538 original size:136 final size:136
Alignment explanation
Indices: 46785294--46785578 Score: 516
Period size: 136 Copynumber: 2.1 Consensus size: 136
46785284 TATTGGGCCT
** * *
46785294 AAGCCCATTCAGGTAACAGTGGTACTGGACCAGAGCCCTTTTCAGATTACAATAAACTGGGTCTT
1 AAGCCCATTTGGGTAACAATGGTACTGGACCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
46785359 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
46785424 ATATGC
131 ATATGC
* *
46785430 AAGCCCATTTGGGTAACAATGGTACTGGACCAGAGCCTTTTTCAGATTATAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAATGGTACTGGACCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
46785495 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
46785560 ATATGC
131 ATATGC
46785566 AAGCCCATTTGGG
1 AAGCCCATTTGGG
46785579 GAGACTACTC
Statistics
Matches: 143, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
136 143 1.00
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.26
Consensus pattern (136 bp):
AAGCCCATTTGGGTAACAATGGTACTGGACCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
ATATGC
Found at i:46787404 original size:26 final size:26
Alignment explanation
Indices: 46787371--46787474 Score: 172
Period size: 26 Copynumber: 4.0 Consensus size: 26
46787361 ATTCTCATCT
*
46787371 TGGAACATTTACCTAAACCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
*
46787397 TGGAACATTTACCCAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
* *
46787423 TGGAATATTTACCTAATCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
46787449 TGGAACATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
46787475 ATTTGTACCA
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 71 1.00
ACGTcount: A:0.36, C:0.25, G:0.08, T:0.32
Consensus pattern (26 bp):
TGGAACATTTACCTAACCCATTATCA
Found at i:46789709 original size:9 final size:9
Alignment explanation
Indices: 46789697--46789741 Score: 90
Period size: 9 Copynumber: 5.0 Consensus size: 9
46789687 TAATTGAATT
46789697 GAATTATTC
1 GAATTATTC
46789706 GAATTATTC
1 GAATTATTC
46789715 GAATTATTC
1 GAATTATTC
46789724 GAATTATTC
1 GAATTATTC
46789733 GAATTATTC
1 GAATTATTC
46789742 AAGTCAACTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 36 1.00
ACGTcount: A:0.33, C:0.11, G:0.11, T:0.44
Consensus pattern (9 bp):
GAATTATTC
Found at i:46789969 original size:19 final size:19
Alignment explanation
Indices: 46789908--46789970 Score: 58
Period size: 19 Copynumber: 3.3 Consensus size: 19
46789898 TTACAAACAA
* *
46789908 AAAAATCAAAATAACTTAC
1 AAAAATCAAAATAATTTAT
*
46789927 AAAAATTCAAGATAATTT-T
1 AAAAA-TCAAAATAATTTAT
*
46789946 TAAAATCCAAAAT-ATTTAT
1 AAAAAT-CAAAATAATTTAT
46789965 AAAAAT
1 AAAAAT
46789971 TTCAAAAAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
18 5 0.14
19 20 0.57
20 10 0.29
ACGTcount: A:0.59, C:0.10, G:0.02, T:0.30
Consensus pattern (19 bp):
AAAAATCAAAATAATTTAT
Found at i:46790010 original size:20 final size:18
Alignment explanation
Indices: 46789964--46790002 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
46789954 AAAATATTTA
* *
46789964 TAAAAATTTCAAAAAAATC
1 TAAAAATAT-AAAAAAAAC
46789983 TAAAAATATAAAAAAAAC
1 TAAAAATATAAAAAAAAC
46790001 TA
1 TA
46790003 GAATAATAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.23
Consensus pattern (18 bp):
TAAAAATATAAAAAAAAC
Found at i:46791989 original size:20 final size:20
Alignment explanation
Indices: 46791966--46792007 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
46791956 TTTTAAAAAA
*
46791966 CAAGTAAGGTTTTTAATGTC
1 CAAGTAAGGTTCTTAATGTC
46791986 CAAGTAAGGTTCTTAATGTC
1 CAAGTAAGGTTCTTAATGTC
46792006 CA
1 CA
46792008 GTTTCAATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.36
Consensus pattern (20 bp):
CAAGTAAGGTTCTTAATGTC
Found at i:46793723 original size:57 final size:57
Alignment explanation
Indices: 46793657--46793834 Score: 191
Period size: 57 Copynumber: 3.1 Consensus size: 57
46793647 TCATTTTCAT
* * *
46793657 TTTTC-TTTTCAGTTTGGAGAAAGCCATATTCATTTATAAATGATTCCATTTCTCCA
1 TTTTCATTTTCAGTTTGGAGAAAACCATATTCATTTACAAATGTTTCCATTTCTCCA
* * * ** *
46793713 TTTTCATTTTCAGTTTGGAGAAAACTATAATCATTTCCAAATGTTTCTGTTTCTCTA
1 TTTTCATTTTCAGTTTGGAGAAAACCATATTCATTTACAAATGTTTCCATTTCTCCA
* * *
46793770 TTTT-AATTTCATTTTGGAGAAAACCATAATT-ATTTTACAAATTGTTTCCAATTTCTACA
1 TTTTCATTTTCAGTTTGGAGAAAACCAT-ATTCA-TTTACAAA-TGTTTCC-ATTTCTCCA
46793829 TTTTCA
1 TTTTCA
46793835 CCATTTCTAT
Statistics
Matches: 98, Mismatches: 18, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
56 26 0.27
57 55 0.56
58 6 0.06
59 10 0.10
60 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.09, T:0.47
Consensus pattern (57 bp):
TTTTCATTTTCAGTTTGGAGAAAACCATATTCATTTACAAATGTTTCCATTTCTCCA
Found at i:46804334 original size:30 final size:30
Alignment explanation
Indices: 46804289--46804348 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
46804279 ATTTAATACG
46804289 AACTTTGGCAAAATTACA-TTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTT-CCCCTA
* *
46804319 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTGGCAAAATTACACTTTTTCCCCTA
46804349 GGCTCGAGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.28, C:0.25, G:0.07, T:0.40
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTTCCCCTA
Found at i:46807934 original size:39 final size:39
Alignment explanation
Indices: 46807891--46808046 Score: 163
Period size: 39 Copynumber: 4.0 Consensus size: 39
46807881 GTGTGAGATA
* *
46807891 TATATTCGGGCTAATTCCCGAAGGCATTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGT
* * *
46807930 TATATCCGGGCTAAGTCCCAAAGGCATTCGTGCTGATGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGT
* * * *
46807969 TATATCCGGGCTAAAGTCCCGCAGGC-CTTGTGCGGGTAT
1 TATATCCGGGCT-AAGTCCCGAAGGCATTTGTGCTGGTGT
* * *
46808008 TATATCCGGGCTTAAAGTCCCGCATGC-TTTGTGGTGGTG
1 TATATCCGGGC-T-AAGTCCCGAAGGCATTTGTGCTGGTG
46808047 ATTGGATTTG
Statistics
Matches: 98, Mismatches: 17, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
39 65 0.66
40 33 0.34
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.31
Consensus pattern (39 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGT
Found at i:46808024 original size:40 final size:38
Alignment explanation
Indices: 46807858--46808040 Score: 152
Period size: 39 Copynumber: 4.7 Consensus size: 38
46807848 AGGATTTTAA
* * *
46807858 CCGGGCTAAGACCCGCAGGCCTTGTGTGAG-ATATATAT
1 CCGGGCTAAGTCCCGCAGGCCTTGTGCGGGTAT-TATAT
* * * * * *
46807896 TCGGGCTAATTCCCGAAGGCATTTGTGCTGGTGTTATAT
1 CCGGGCTAAGTCCCGCAGGC-CTTGTGCGGGTATTATAT
** * * * *
46807935 CCGGGCTAAGTCCCAAAGGCATTCGTGCTGATGTTATAT
1 CCGGGCTAAGTCCCGCAGGCCTT-GTGCGGGTATTATAT
46807974 CCGGGCTAAAGTCCCGCAGGCCTTGTGCGGGTATTATAT
1 CCGGGCT-AAGTCCCGCAGGCCTTGTGCGGGTATTATAT
* *
46808013 CCGGGCTTAAAGTCCCGCATGCTTTGTG
1 CCGGGC-T-AAGTCCCGCAGGCCTTGTG
46808041 GTGGTGATTG
Statistics
Matches: 118, Mismatches: 22, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
38 18 0.15
39 67 0.57
40 33 0.28
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.28
Consensus pattern (38 bp):
CCGGGCTAAGTCCCGCAGGCCTTGTGCGGGTATTATAT
Found at i:46816707 original size:13 final size:13
Alignment explanation
Indices: 46816689--46816715 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
46816679 CTTTCAGCCC
46816689 CGTAACAAAAGAA
1 CGTAACAAAAGAA
46816702 CGTAACAAAAGAA
1 CGTAACAAAAGAA
46816715 C
1 C
46816716 ATAGATCATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.59, C:0.19, G:0.15, T:0.07
Consensus pattern (13 bp):
CGTAACAAAAGAA
Found at i:46820002 original size:18 final size:18
Alignment explanation
Indices: 46819979--46820014 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
46819969 TACATGGTTA
46819979 CTGCTGCTTCAACCATGT
1 CTGCTGCTTCAACCATGT
46819997 CTGCTGCTTCAACCATGT
1 CTGCTGCTTCAACCATGT
46820015 TGGAAAAACG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.33, G:0.17, T:0.33
Consensus pattern (18 bp):
CTGCTGCTTCAACCATGT
Found at i:46831936 original size:19 final size:19
Alignment explanation
Indices: 46831912--46831949 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
46831902 GTATTCGATT
46831912 GAGGAATTCCCTTACTACG
1 GAGGAATTCCCTTACTACG
46831931 GAGGAATTCCCTTACTACG
1 GAGGAATTCCCTTACTACG
46831950 CGCATATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (19 bp):
GAGGAATTCCCTTACTACG
Found at i:46839593 original size:27 final size:27
Alignment explanation
Indices: 46839531--46839596 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
46839521 TCTTTGAGTC
* *
46839531 CAATTGGGTCTCGCGTTTGGGTTATTA
1 CAATTGGGTTTAGCGTTTGGGTTATTA
* * *
46839558 GAATCGGGTTTAGGGTTTGGGTTTATT-
1 CAATTGGGTTTAGCGTTTGGG-TTATTA
46839585 CAATTGGGTTTA
1 CAATTGGGTTTA
46839597 AAAAAATGTA
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
27 26 0.84
28 5 0.16
ACGTcount: A:0.17, C:0.09, G:0.32, T:0.42
Consensus pattern (27 bp):
CAATTGGGTTTAGCGTTTGGGTTATTA
Found at i:46850002 original size:15 final size:16
Alignment explanation
Indices: 46849979--46850011 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
46849969 CATTATTTAA
*
46849979 TATTTCTAG-TAAAAT
1 TATTCCTAGTTAAAAT
46849994 TATTCCTAGTTAAAAT
1 TATTCCTAGTTAAAAT
46850010 TA
1 TA
46850012 ATATGAAGTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.39, C:0.09, G:0.06, T:0.45
Consensus pattern (16 bp):
TATTCCTAGTTAAAAT
Found at i:46854365 original size:39 final size:40
Alignment explanation
Indices: 46854320--46854544 Score: 251
Period size: 40 Copynumber: 5.7 Consensus size: 40
46854310 GCTCCTCGTT
* * * *
46854320 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
46854360 C-AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
46854399 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
46854439 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
46854479 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
46854520 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
46854545 CAGCATTCAA
Statistics
Matches: 161, Mismatches: 18, Indels: 12
0.84 0.09 0.06
Matches are distributed among these distances:
39 40 0.25
40 106 0.66
41 15 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:46854553 original size:41 final size:41
Alignment explanation
Indices: 46854476--46854553 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
46854466 TTTGTATCTC
* * *
46854476 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
46854517 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
46854554 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:46860759 original size:40 final size:39
Alignment explanation
Indices: 46860668--46860930 Score: 296
Period size: 40 Copynumber: 6.6 Consensus size: 39
46860658 TCCTCGTTCA
* * * *
46860668 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
46860707 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
46860746 GAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
46860786 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
46860826 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
46860866 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
46860907 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
46860931 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 39 0.20
40 146 0.74
41 12 0.06
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:46860939 original size:41 final size:41
Alignment explanation
Indices: 46860862--46860939 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
46860852 TTTGTATCTC
* * *
46860862 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
46860903 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
46860940 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:46870120 original size:57 final size:55
Alignment explanation
Indices: 46870049--46870203 Score: 161
Period size: 57 Copynumber: 2.7 Consensus size: 55
46870039 TTATAATATT
* *
46870049 TTATATTATGATTTTTATTAATTCATATTTTAATAATAATA-TTAAGAATATTATTAAA
1 TTATA-TATTATTTTTATTAATT-ATA-TTTAATAATAATAGTTAA-AATATGATTAAA
*
46870107 TTATATATTA-TTTTATTAATTTTTATTTAATAATAATTATGTTAAAATATGATTAAA
1 TTATATATTATTTTTATTAA-TTATATTTAATAATAA-TA-GTTAAAATATGATTAAA
* *
46870164 TTATTTATTATTAATTTATTAAATTAAATTTAATAATAAT
1 TTATATATTATT--TTTATT-AATTATATTTAATAATAAT
46870204 CTTATTAAAA
Statistics
Matches: 83, Mismatches: 6, Indels: 15
0.80 0.06 0.14
Matches are distributed among these distances:
55 11 0.13
56 13 0.16
57 26 0.31
58 10 0.12
59 1 0.01
60 20 0.24
61 2 0.02
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.54
Consensus pattern (55 bp):
TTATATATTATTTTTATTAATTATATTTAATAATAATAGTTAAAATATGATTAAA
Found at i:46870212 original size:60 final size:56
Alignment explanation
Indices: 46870077--46870213 Score: 152
Period size: 60 Copynumber: 2.4 Consensus size: 56
46870067 TAATTCATAT
* * * **
46870077 TTTAATAATAA--TATTAAGAATATTATTAAATTATATATTATTTTATTAATTTTTA
1 TTTAATAATAATTTATTAA-AATATGATTAAATTATATATTAATTTATTAAATTAAA
*
46870132 TTTAATAATAATTATGTTAAAATATGATTAAATTATTTATTATTAATTTATTAAATTAAA
1 TTTAATAATAATT-TATTAAAATATGATTAAATTA--TA-TATTAATTTATTAAATTAAA
46870192 TTTAATAATAATCTTATTAAAA
1 TTTAATAATAAT-TTATTAAAA
46870214 ATAAAAAATA
Statistics
Matches: 68, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
55 11 0.16
57 14 0.21
58 5 0.07
59 2 0.03
60 35 0.51
61 1 0.01
ACGTcount: A:0.46, C:0.01, G:0.02, T:0.51
Consensus pattern (56 bp):
TTTAATAATAATTTATTAAAATATGATTAAATTATATATTAATTTATTAAATTAAA
Found at i:46873441 original size:30 final size:30
Alignment explanation
Indices: 46873407--46873464 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
46873397 TTTTCGAATA
* *
46873407 TAGGGGTAAAATGGTCATTTTGCCAAAGCC
1 TAGGGGCAAAATGGTCATTTTACCAAAGCC
46873437 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGCAAAATGGTCATTTTACCAAAG
46873465 ATGTGAAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.26
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGCC
Found at i:46873971 original size:47 final size:46
Alignment explanation
Indices: 46873808--46873973 Score: 147
Period size: 47 Copynumber: 3.5 Consensus size: 46
46873798 ATGTGAGAGT
* * * * *
46873808 TAGTGTAAGACATGTCTGAGACATGGCATTGGCATTGAGACGAGGGT
1 TAGTGTAAGACATGTCTGGGACATGGCATCGGC-TAGAGACGAGTGC
* * * * * *
46873855 TAGTGTAAGACGTGTCTGGAACAT-GCATCAGCCACATTACGA-TAGC
1 TAGTGTAAGACATGTCTGGGACATGGCATCGGCTAGA-GACGAGT-GC
*
46873901 TAGTGTAAGAACATGTCTAGGACATGGCATCGGCGTAGAGACGAGTGC
1 TAGTGTAAG-ACATGTCTGGGACATGGCATCGGC-TAGAGACGAGTGC
* *
46873949 CAGTGTAAGACGTGTCTGGGACATG
1 TAGTGTAAGACATGTCTGGGACATG
46873974 CATTGTGACA
Statistics
Matches: 92, Mismatches: 21, Indels: 12
0.74 0.17 0.10
Matches are distributed among these distances:
45 1 0.01
46 20 0.22
47 47 0.51
48 21 0.23
49 3 0.03
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.23
Consensus pattern (46 bp):
TAGTGTAAGACATGTCTGGGACATGGCATCGGCTAGAGACGAGTGC
Found at i:46875796 original size:39 final size:40
Alignment explanation
Indices: 46875680--46875871 Score: 171
Period size: 40 Copynumber: 4.8 Consensus size: 40
46875670 TCGAATGATG
* * * *
46875680 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTAC-GAGTTACTAAT
* * *
46875719 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTACGAGTTACTAAT
* *
46875760 TCCGGGCTAAG-CCCCAAGGCATTGGTACGAGTTACTAAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACT-AAT
* *
46875800 T-CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAT
* * *
46875838 AACCGGGCTATGTCCCGAAGGCATTTGAACGAGT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGT
46875872 AGCTATATCC
Statistics
Matches: 125, Mismatches: 19, Indels: 16
0.78 0.12 0.10
Matches are distributed among these distances:
38 2 0.02
39 28 0.22
40 85 0.68
41 10 0.08
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAT
Found at i:46875886 original size:79 final size:79
Alignment explanation
Indices: 46875733--46875897 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
46875723 GGACTAAGAT
* *
46875733 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCCAAGGCATTGGTACGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCCAAGGCATTGGAACGAGTTACTAA
* *
46875798 ATTCGGGTTAAGTC
66 ATTCCGGTTAAATC
* * * *
46875812 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCCAAGGCATTGGAACGAGTTA-C
* *
46875875 TATA-TCCGGTTAAATT
63 TAAATTCCGGTTAAATC
46875891 CCGAAGG
1 CCGAAGG
46875898 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 50 0.68
80 21 0.29
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCCAAGGCATTGGAACGAGTTACTAA
ATTCCGGTTAAATC
Found at i:46883869 original size:39 final size:40
Alignment explanation
Indices: 46883761--46883945 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
46883751 TCGAATGATG
* * *
46883761 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
46883800 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
46883841 TCCGGGCTAAG-CCCGAAGGTATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
46883880 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
46883919 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
46883946 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:46883967 original size:79 final size:79
Alignment explanation
Indices: 46883814--46883968 Score: 190
Period size: 79 Copynumber: 2.0 Consensus size: 79
46883804 GGACTAAGAT
* * **
46883814 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGTATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
46883879 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * *
46883893 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
46883956 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
46883969 ATTCTGAAGG
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
78 2 0.03
79 40 0.62
80 23 0.35
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:46888209 original size:7 final size:7
Alignment explanation
Indices: 46888197--46888274 Score: 84
Period size: 7 Copynumber: 10.9 Consensus size: 7
46888187 ACCAAGTATG
46888197 TAGGGTT
1 TAGGGTT
46888204 TAGGGTT
1 TAGGGTT
*
46888211 TAGGCTT
1 TAGGGTT
* *
46888218 TAAGATT
1 TAGGGTT
*
46888225 TAAGGTTT
1 T-AGGGTT
*
46888233 TAAGGTT
1 TAGGGTT
*
46888240 TATGGTT
1 TAGGGTT
46888247 TAGGGTT
1 TAGGGTT
46888254 TAGGGTTT
1 TAGGG-TT
46888262 TAGGGTT
1 TAGGGTT
46888269 TAGGGT
1 TAGGGT
46888275 AGGGGTCATT
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
7 48 0.80
8 12 0.20
ACGTcount: A:0.19, C:0.01, G:0.35, T:0.45
Consensus pattern (7 bp):
TAGGGTT
Found at i:46888241 original size:29 final size:28
Alignment explanation
Indices: 46888202--46888272 Score: 88
Period size: 29 Copynumber: 2.5 Consensus size: 28
46888192 GTATGTAGGG
46888202 TTTAGGGTTTAGGCTTTAAGATTTAAGGT
1 TTTAGGGTTTAGG-TTTAAGATTTAAGGT
* * * *
46888231 TTTAAGGTTTATGGTTTAGGGTTTAGGGT
1 TTTAGGGTTTA-GGTTTAAGATTTAAGGT
46888260 TTTAGGGTTTAGG
1 TTTAGGGTTTAGG
46888273 GTAGGGGTCA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
28 2 0.06
29 32 0.89
30 2 0.06
ACGTcount: A:0.20, C:0.01, G:0.32, T:0.46
Consensus pattern (28 bp):
TTTAGGGTTTAGGTTTAAGATTTAAGGT
Found at i:46888263 original size:15 final size:15
Alignment explanation
Indices: 46888197--46888274 Score: 81
Period size: 15 Copynumber: 5.4 Consensus size: 15
46888187 ACCAAGTATG
46888197 TAGGG-TTTAGGGTT
1 TAGGGTTTTAGGGTT
* * *
46888211 TA-GGCTTTAAGATT
1 TAGGGTTTTAGGGTT
* *
46888225 TAAGGTTTTAAGGTT
1 TAGGGTTTTAGGGTT
*
46888240 TATGG-TTTAGGGTT
1 TAGGGTTTTAGGGTT
46888254 TAGGGTTTTAGGGTT
1 TAGGGTTTTAGGGTT
46888269 TAGGGT
1 TAGGGT
46888275 AGGGGTCATT
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
13 2 0.04
14 23 0.43
15 29 0.54
ACGTcount: A:0.19, C:0.01, G:0.35, T:0.45
Consensus pattern (15 bp):
TAGGGTTTTAGGGTT
Found at i:46892319 original size:30 final size:30
Alignment explanation
Indices: 46892247--46892333 Score: 149
Period size: 29 Copynumber: 2.9 Consensus size: 30
46892237 TTTTCGAATA
46892247 TAGGGGTAAAATGGTCATTTTGCCAAAGCC
1 TAGGGGTAAAATGGTCATTTTGCCAAAGCC
46892277 T-GGGGTAAAATGGTCATTTTGCCAAAGCC
1 TAGGGGTAAAATGGTCATTTTGCCAAAGCC
* *
46892306 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGTAAAATGGTCATTTTGCCAAAG
46892334 ATGTGAAATT
Statistics
Matches: 54, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
29 29 0.54
30 25 0.46
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.26
Consensus pattern (30 bp):
TAGGGGTAAAATGGTCATTTTGCCAAAGCC
Found at i:46894060 original size:29 final size:28
Alignment explanation
Indices: 46894024--46894101 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
46894014 TCATGAGATT
46894024 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
46894054 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
46894081 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
46894102 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:46894319 original size:174 final size:174
Alignment explanation
Indices: 46894054--46894443 Score: 744
Period size: 174 Copynumber: 2.2 Consensus size: 174
46894044 AAATTGTACA
* * *
46894054 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCATAGTTGATTATTAAGCACTATG
46894119 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
46894184 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
46894228 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCATAGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCATAGTTGATTATTAAGCACTATG
46894293 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
46894358 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
46894402 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGC
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGC
46894444 GAACCCAATA
Statistics
Matches: 212, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 212 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCATAGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:46896198 original size:47 final size:47
Alignment explanation
Indices: 46896130--46896302 Score: 133
Period size: 47 Copynumber: 3.7 Consensus size: 47
46896120 TGTGAGAACC
*
46896130 AGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGACGAGGGCT
1 AGTGTAAGACCATGTCTAGGACAT-GCATCGGCATTGAGACGAGAGCT
* * * *
46896178 AGTGTAAGA-CGTGTCTAGGACATGCATCAGCCACATT---ACGATAACT
1 AGTGTAAGACCATGTCTAGGACATGCATC-G--GCATTGAGACGAGAGCT
* * * * *
46896224 AGTGTAAGACCATGTCT-GAGACATGGCATCGGCGTAGAGATGAGTGCC
1 AGTGTAAGACCATGTCTAG-GACAT-GCATCGGCATTGAGACGAGAGCT
* * *
46896272 AGTGTAAGA-CGTGCCTGGGACATGCATCGGC
1 AGTGTAAGACCATGTCTAGGACATGCATCGGC
46896303 CTCAATGATG
Statistics
Matches: 99, Mismatches: 16, Indels: 22
0.72 0.12 0.16
Matches are distributed among these distances:
45 2 0.02
46 29 0.29
47 36 0.36
48 28 0.28
49 4 0.04
ACGTcount: A:0.28, C:0.20, G:0.31, T:0.21
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTAGGACATGCATCGGCATTGAGACGAGAGCT
Found at i:46896320 original size:47 final size:47
Alignment explanation
Indices: 46896178--46896492 Score: 157
Period size: 47 Copynumber: 6.7 Consensus size: 47
46896168 GACGAGGGCT
* * * * * * * * *
46896178 AGTGTAAGACGTGTCTAGGACATGCATCAGCCAC-ATTACGATAACT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAATGATGGTAGCC
* *
46896224 AGTGTAAGACCATGTCTGAGACATGGCATCGGCGT-AGA-GATGAGT-GCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCA-ATGATG-GTAGCC
* *
46896272 AGTGTAAGACGTGCCTGGGACATGCATCGGCCTCAATGATGGTAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAATGATGGTAGCC
* * * * * *
46896319 AGTCTCAGACATGTCTGGGACATGCATCTG-CT-AA-GCTTTGT-GCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAATG-ATGGTAGCC
* ** * * * *
46896363 AATGTAAGACATGTCTGGGACATATATCAGCACT-TATACATGAG-AGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGC-CTCAAT-GATG-GTAGCC
* * * *
46896411 AGTGTAAGACAATGTCTGGGACATGGCACCGGCCTCGACGAAT-ATAGCC
1 AGTGTAAGAC-ATGTCTGGGACAT-GCATCGGCCTCAATG-ATGGTAGCC
*
46896460 AGTGTCAGACCATGTCTGGGACATAGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
46896493 AATTTAACCC
Statistics
Matches: 202, Mismatches: 46, Indels: 39
0.70 0.16 0.14
Matches are distributed among these distances:
44 27 0.13
45 5 0.02
46 26 0.13
47 56 0.28
48 32 0.16
49 48 0.24
50 8 0.04
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAATGATGGTAGCC
Found at i:46896332 original size:94 final size:94
Alignment explanation
Indices: 46896126--46896346 Score: 241
Period size: 94 Copynumber: 2.4 Consensus size: 94
46896116 GTTATGTGAG
* * *
46896126 AACCAGTGTAAGACCATGTCT-AGGACATGGCATCGGCATTGAGACGAGGGCTAGTGTAAGACGT
1 AACCAGTCTAAGACCATGTCTGA-GACATGGCATCGGCATAGAGACGAGGGCCAGTGTAAGACGT
* *
46896190 GTCTAGGACATGCATCAGCCACATTACGAT
65 GCCTAGGACATGCATCAGCCACATGACGAT
* * * * *
46896220 AACTAGTGTAAGACCATGTCTGAGACATGGCATCGGCGTAGAGATGAGTGCCAGTGTAAGACGTG
1 AACCAGTCTAAGACCATGTCTGAGACATGGCATCGGCATAGAGACGAGGGCCAGTGTAAGACGTG
* * * * *
46896285 CCTGGGACATGCATCGGCCTCAATGATGGT
66 CCTAGGACATGCATCAGCCAC-ATGACGAT
* * *
46896315 AGCCAGTCTCAGA-CATGTCTGGGACAT-GCATC
1 AACCAGTCTAAGACCATGTCTGAGACATGGCATC
46896347 TGCTAAGCTT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
93 5 0.05
94 87 0.81
95 15 0.14
ACGTcount: A:0.28, C:0.22, G:0.29, T:0.22
Consensus pattern (94 bp):
AACCAGTCTAAGACCATGTCTGAGACATGGCATCGGCATAGAGACGAGGGCCAGTGTAAGACGTG
CCTAGGACATGCATCAGCCACATGACGAT
Found at i:46897342 original size:55 final size:56
Alignment explanation
Indices: 46897238--46897356 Score: 127
Period size: 55 Copynumber: 2.2 Consensus size: 56
46897228 CTTAAACTTT
* * *
46897238 TAAGTCAGTACTATCCACGGGTAGGACACAAGGGCATGTGCTATAGCCGTG-TCTA
1 TAAGTCAGTACTATCCAAGGGTAGGACACAAGAGCATGTGCTATAGCCGTGCCCTA
* * * * * *
46897293 TAAGTCAGTATTGTCCAAGGGTATGCCACACGAGCATGTG-TCATGGCCGTGCCCTA
1 TAAGTCAGTACTATCCAAGGGTAGGACACAAGAGCATGTGCT-ATAGCCGTGCCCTA
46897349 -AAGTCAGT
1 TAAGTCAGT
46897357 GTTGCACACG
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
54 1 0.02
55 49 0.92
56 3 0.06
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (56 bp):
TAAGTCAGTACTATCCAAGGGTAGGACACAAGAGCATGTGCTATAGCCGTGCCCTA
Found at i:46898649 original size:47 final size:46
Alignment explanation
Indices: 46898587--46898710 Score: 130
Period size: 47 Copynumber: 2.7 Consensus size: 46
46898577 CTGGTAGCCG
46898587 ATGCATGTCCCAGACATGTCTTACACTAGCACTCGTC-TCAATGT-CA
1 ATGCATGTCCCAGACATGTCTTACACTAGCACTC-TCAT-AATGTGCA
* * * *
46898633 ATGCCATGTCCAAGACATAGTCTTGCACT-G-GCTCTCATAATGTGGCCG
1 ATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCTCATAATGT-G-CA
46898681 ATGCATGTCCCAGACATGTCTTACACTAGC
1 ATGCATGTCCCAGACATGTCTTACACTAGC
46898711 TCACAATAAC
Statistics
Matches: 64, Mismatches: 6, Indels: 14
0.76 0.07 0.17
Matches are distributed among these distances:
45 7 0.11
46 16 0.25
47 28 0.44
48 13 0.20
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCACTCTCATAATGTGCA
Found at i:46901869 original size:34 final size:35
Alignment explanation
Indices: 46901829--46901906 Score: 140
Period size: 34 Copynumber: 2.3 Consensus size: 35
46901819 ACAAACATAC
46901829 AAAGTAATAATTAAATAATGCATGATATAC-AAAA
1 AAAGTAATAATTAAATAATGCATGATATACAAAAA
*
46901863 AAAGTAATAATTAAATAATGTATGATATACAAAAA
1 AAAGTAATAATTAAATAATGCATGATATACAAAAA
46901898 AAAGTAATA
1 AAAGTAATA
46901907 CAATATCAAT
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
34 29 0.69
35 13 0.31
ACGTcount: A:0.60, C:0.04, G:0.09, T:0.27
Consensus pattern (35 bp):
AAAGTAATAATTAAATAATGCATGATATACAAAAA
Found at i:46902125 original size:24 final size:24
Alignment explanation
Indices: 46902079--46902126 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
46902069 CTATACAATA
*
46902079 TATAAAACATGATAACAAAATATT
1 TATAAAAAATGATAACAAAATATT
*
46902103 TATAAAAGAATGATAA-AATATATT
1 TATAAAA-AATGATAACAAAATATT
46902127 GGGTTTTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 14 0.67
25 7 0.33
ACGTcount: A:0.58, C:0.04, G:0.06, T:0.31
Consensus pattern (24 bp):
TATAAAAAATGATAACAAAATATT
Found at i:46902411 original size:30 final size:30
Alignment explanation
Indices: 46902370--46902430 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
46902360 AACATATATA
*
46902370 AAAAAATAATAAGTAATATAGAATAAAAAT
1 AAAAAATAATAAATAATATAGAATAAAAAT
* ** *
46902400 AAAATATAATAAATGTTATATAATAAAAAT
1 AAAAAATAATAAATAATATAGAATAAAAAT
46902430 A
1 A
46902431 TAATTTAGAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (30 bp):
AAAAAATAATAAATAATATAGAATAAAAAT
Found at i:46902584 original size:35 final size:36
Alignment explanation
Indices: 46902540--46902639 Score: 111
Period size: 35 Copynumber: 2.9 Consensus size: 36
46902530 TAATACAAGT
*
46902540 AAAAT-ATAATAATAATATAT-AAAAATAATGAT-GG
1 AAAATAATAATAATAATATATGAAAAATAAT-ATACG
* *
46902574 AAAATAATAATAATAATTTGTGAAAAATAATATACG
1 AAAATAATAATAATAATATATGAAAAATAATATACG
*
46902610 ATAAATAATAAT-AT-ATATATGATAAATAAT
1 A-AAATAATAATAATAATATATGAAAAATAAT
46902640 CTTATAGTGT
Statistics
Matches: 56, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
34 5 0.09
35 28 0.50
36 13 0.23
37 10 0.18
ACGTcount: A:0.60, C:0.01, G:0.07, T:0.32
Consensus pattern (36 bp):
AAAATAATAATAATAATATATGAAAAATAATATACG
Found at i:46902645 original size:21 final size:21
Alignment explanation
Indices: 46902599--46902639 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
46902589 ATTTGTGAAA
46902599 AATA-ATATACGATAAATAAT
1 AATATATATACGATAAATAAT
*
46902619 AATATATATATGATAAATAAT
1 AATATATATACGATAAATAAT
46902640 CTTATAGTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.59, C:0.02, G:0.05, T:0.34
Consensus pattern (21 bp):
AATATATATACGATAAATAAT
Found at i:46922580 original size:34 final size:34
Alignment explanation
Indices: 46922540--46922616 Score: 136
Period size: 34 Copynumber: 2.3 Consensus size: 34
46922530 ACAAACATAC
46922540 AAAGTAATAATTAAATAATGCATGATATACAAAA
1 AAAGTAATAATTAAATAATGCATGATATACAAAA
*
46922574 AAAGTAATAATTAAATAATGTATGATATACAAAA
1 AAAGTAATAATTAAATAATGCATGATATACAAAA
*
46922608 AGAGTAATA
1 AAAGTAATA
46922617 CAATATCAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 41 1.00
ACGTcount: A:0.58, C:0.04, G:0.10, T:0.27
Consensus pattern (34 bp):
AAAGTAATAATTAAATAATGCATGATATACAAAA
Found at i:46922845 original size:24 final size:24
Alignment explanation
Indices: 46922799--46922846 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
46922789 CTATACAATA
*
46922799 TATAAAACATGATAACAAAATATT
1 TATAAAAAATGATAACAAAATATT
*
46922823 TATAAAAGAATGATAA-AATATATT
1 TATAAAA-AATGATAACAAAATATT
46922847 GGGTTTTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 14 0.67
25 7 0.33
ACGTcount: A:0.58, C:0.04, G:0.06, T:0.31
Consensus pattern (24 bp):
TATAAAAAATGATAACAAAATATT
Found at i:46923126 original size:30 final size:31
Alignment explanation
Indices: 46923022--46923145 Score: 81
Period size: 30 Copynumber: 3.7 Consensus size: 31
46923012 TTTAAAATTT
*
46923022 TAAATAATATAATGAATAATAAATAATATAATAGA
1 TAAATAATAT-A-GAATAA-AAATAAAATAATA-A
*
46923057 TAATATATGATATA-CATAACATATATAAAAATAATAA
1 TAA-ATA--ATATAGAATAA-A-A-AT-AAAATAATAA
*
46923094 TAAGTAATATAGAATAAAAATAAAAT-ATAA
1 TAAATAATATAGAATAAAAATAAAATAATAA
** *
46923124 TAAATGTTATATAATAAAAATA
1 TAAATAATATAGAATAAAAATA
46923146 TAATTTGGAT
Statistics
Matches: 73, Mismatches: 9, Indels: 19
0.72 0.09 0.19
Matches are distributed among these distances:
30 22 0.30
31 5 0.07
32 2 0.03
33 1 0.01
34 6 0.08
35 12 0.16
36 6 0.08
37 7 0.10
38 12 0.16
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (31 bp):
TAAATAATATAGAATAAAAATAAAATAATAA
Found at i:46923127 original size:16 final size:16
Alignment explanation
Indices: 46923081--46923127 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
46923071 CATAACATAT
46923081 ATAAAA-ATAATAATAA
1 ATAAAATATAATAA-AA
* * *
46923097 GTAATATAGAATAAAA
1 ATAAAATATAATAAAA
46923113 ATAAAATATAATAAA
1 ATAAAATATAATAAA
46923128 TGTTATATAA
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
16 18 0.75
17 6 0.25
ACGTcount: A:0.70, C:0.00, G:0.04, T:0.26
Consensus pattern (16 bp):
ATAAAATATAATAAAA
Found at i:46926911 original size:39 final size:40
Alignment explanation
Indices: 46926813--46927033 Score: 258
Period size: 40 Copynumber: 5.6 Consensus size: 40
46926803 AATGATGTCT
*
46926813 GGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-AATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT-TCC
*
46926853 GGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAATTCC
46926893 GGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCC
* * *
46926932 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTATTAAATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCC
* * * *
46926971 GGGTTATGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT-TCC
*
46927011 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
46927034 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 12, Indels: 14
0.86 0.06 0.07
Matches are distributed among these distances:
39 73 0.45
40 75 0.46
41 13 0.08
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCC
Found at i:46926985 original size:79 final size:81
Alignment explanation
Indices: 46926813--46927033 Score: 267
Period size: 79 Copynumber: 2.8 Consensus size: 81
46926803 AATGATGTCT
* * *
46926813 GGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCATTT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATATCCGGGCTAAGACCCGAAGGCATTT
*
46926875 GTGCGAGATACTAATTCC
64 GTGCGAGATACTAAATCC
46926893 GGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT-TCCGGGCTAAG-CCCGAAGGCATTTGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATTTGT
* *
46926955 GCGAGTTATTAAATCC
66 GCGAGATACTAAATCC
* * * * * *
46926971 GGGTTATGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATTTG
46927034 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 11, Indels: 12
0.84 0.07 0.08
Matches are distributed among these distances:
78 35 0.28
79 54 0.44
80 34 0.27
81 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (81 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATTTGT
GCGAGATACTAAATCC
Found at i:46927047 original size:40 final size:40
Alignment explanation
Indices: 46926891--46927052 Score: 120
Period size: 40 Copynumber: 4.1 Consensus size: 40
46926881 GATACTAATT
* ** *
46926891 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGAT-ACTA-ATT
1 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TGACTATA-A
* ** * *
46926930 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTATTA-AA
1 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTGACTATAA
* ** *
46926968 TCCGGGTTATGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTATGTCCCGAAGGCATTTGAACGAGTGACTATAA
*
46927009 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATAT
1 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTGA-CTATAA
46927049 CCGG
1 CCGG
46927053 TTAAATTCCG
Statistics
Matches: 108, Mismatches: 10, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
38 1 0.01
39 43 0.40
40 62 0.57
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTATGTCCCGAAGGCATTTGAACGAGTGACTATAA
Found at i:46927064 original size:79 final size:79
Alignment explanation
Indices: 46926821--46927066 Score: 193
Period size: 79 Copynumber: 3.1 Consensus size: 79
46926811 CTGGGCTAAG
* * * **
46926821 TCCCGAAGGC-TTTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGA
1 TCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCATTTGAACGAG-
* *
46926883 T-ACTAATTCCGGGCT-AA
61 TGACTAAATCCGGGTTAAA
* * ** * *
46926900 GCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTATT
1 TCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACT
**
46926965 AAATCCGGGTTATG
66 AAATCCGGGTTAAA
* *
46926979 TCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GA
1 TCCCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA
*
46927042 GCTATATCC-GGTTAAA
64 -CTAAATCCGGGTTAAA
*
46927058 TTCCGAAGG
1 TCCCGAAGG
46927067 TACGTGATTT
Statistics
Matches: 137, Mismatches: 22, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
77 1 0.01
78 32 0.23
79 67 0.49
80 36 0.26
81 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACT
AAATCCGGGTTAAA
Found at i:46934031 original size:39 final size:40
Alignment explanation
Indices: 46933930--46934192 Score: 326
Period size: 39 Copynumber: 6.7 Consensus size: 40
46933920 TTGAATGATG
*
46933930 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
46933969 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
46934010 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
46934049 TCCGCGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
46934088 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
46934127 TCCGGGTTATGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
46934166 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
46934193 AACGAGGAGC
Statistics
Matches: 202, Mismatches: 14, Indels: 14
0.88 0.06 0.06
Matches are distributed among these distances:
39 110 0.54
40 78 0.39
41 13 0.06
42 1 0.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:46934206 original size:40 final size:40
Alignment explanation
Indices: 46934089--46934211 Score: 117
Period size: 40 Copynumber: 3.1 Consensus size: 40
46934079 GATACTAATT
* ** * *
46934089 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTATTA-AA
1 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTGACTATAA
* ** *
46934127 TCCGGGTTATGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTATGTCCCGAAGGCATTTGAACGAGTGACTATAA
*
46934168 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATAT
1 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTGA-CTATAA
46934208 CCGG
1 CCGG
46934212 TTAAATTCCG
Statistics
Matches: 73, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
39 9 0.12
40 62 0.85
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTATGTCCCGAAGGCATTTGAACGAGTGACTATAA
Found at i:46939265 original size:23 final size:23
Alignment explanation
Indices: 46939179--46939337 Score: 94
Period size: 23 Copynumber: 6.8 Consensus size: 23
46939169 GGACCCACCA
*
46939179 CAGCTCGTATGAGCTTACCGATATAT
1 CAGCTCGTAAGAGCTTACC-AT-T-T
* * *
46939205 CAGCTTGAAAGAGCTTACTATTTT
1 CAGCTCGTAAGAGCTTACCA-TTT
* * **
46939229 TAGCTCATTGGAGCTTACCATTT
1 CAGCTCGTAAGAGCTTACCATTT
* *
46939252 AAGCTCGTAAGAGCTTA-C-TGAT
1 CAGCTCGTAAGAGCTTACCAT-TT
* *
46939274 CAACTCGATAA-AGCTTACCGTTT
1 CAGCTCG-TAAGAGCTTACCATTT
*
46939297 CAGCTCGATAA-AGCTTACCGTTT
1 CAGCTCG-TAAGAGCTTACCATTT
46939320 CAGCTCG-ATAGAGCTTAC
1 CAGCTCGTA-AGAGCTTAC
46939338 TGTTCATCAA
Statistics
Matches: 106, Mismatches: 20, Indels: 17
0.74 0.14 0.12
Matches are distributed among these distances:
21 2 0.02
22 14 0.13
23 57 0.54
24 15 0.14
25 2 0.02
26 16 0.15
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (23 bp):
CAGCTCGTAAGAGCTTACCATTT
Found at i:46939302 original size:45 final size:46
Alignment explanation
Indices: 46939240--46939337 Score: 119
Period size: 45 Copynumber: 2.2 Consensus size: 46
46939230 AGCTCATTGG
*
46939240 AGCTTACCATTTAAGCTCG-TAAGAGCTTACTG-ATCAACTCGATAA
1 AGCTTACCATTTAAGCTCGATAA-AGCTTACCGTATCAACTCGATAA
* * * * *
46939285 AGCTTACCGTTTCAGCTCGATAAAGCTTACCGTTTCAGCTCGATAG
1 AGCTTACCATTTAAGCTCGATAAAGCTTACCGTATCAACTCGATAA
46939331 AGCTTAC
1 AGCTTAC
46939338 TGTTCATCAA
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
45 25 0.56
46 20 0.44
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (46 bp):
AGCTTACCATTTAAGCTCGATAAAGCTTACCGTATCAACTCGATAA
Found at i:46941446 original size:49 final size:49
Alignment explanation
Indices: 46941377--46941508 Score: 162
Period size: 49 Copynumber: 2.7 Consensus size: 49
46941367 ACATCAAAGT
**
46941377 CGATGCCATGTCCTAGACAGGTCTTACACTGACTTTCATATATCGA-GAC
1 CGATGCCATGTCCTAGACAGGTCTTACACTGACAATCATATATCGATG-C
* *
46941426 CGATGCCATGTTCC-AAACAGGTCTTACACT-AGCAATCATCTATCGATGC
1 CGATGCCATG-TCCTAGACAGGTCTTACACTGA-CAATCATATATCGATGC
* *
46941475 TGATGCCATGTCCTAGACAGGTCTTACAATGACA
1 CGATGCCATGTCCTAGACAGGTCTTACACTGACA
46941509 CACAACAAGC
Statistics
Matches: 71, Mismatches: 7, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
48 4 0.06
49 62 0.87
50 5 0.07
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (49 bp):
CGATGCCATGTCCTAGACAGGTCTTACACTGACAATCATATATCGATGC
Found at i:46941551 original size:93 final size:97
Alignment explanation
Indices: 46941378--46941551 Score: 239
Period size: 98 Copynumber: 1.8 Consensus size: 97
46941368 CATCAAAGTC
* * * * * *
46941378 GATGCCATGTCCTAGACAGGTCTTACACTGACTTTCATATATCGAGACCGATGCCATGTTCCAAA
1 GATGCCATGTCCTAGACAGGTCTTACAATGAC-TACACATATCAAGACCGACGCCATGTCCCAAA
46941443 CAGGTCTTACACTAGCAATCATCTATCGATGCT
65 CAGGTCTTACACTAGCAATCATCTATCGATGCT
* *
46941476 GATGCCATGTCCTAGACAGGTCTTACAATGAC-ACACA-A-CAAG-CTGACGCCATGTCCCAAAT
1 GATGCCATGTCCTAGACAGGTCTTACAATGACTACACATATCAAGACCGACGCCATGTCCCAAAC
46941537 AGGTCTTACACTAGC
66 AGGTCTTACACTAGC
46941552 TTGTATAACT
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
93 30 0.44
94 3 0.04
95 1 0.01
96 3 0.04
98 31 0.46
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (97 bp):
GATGCCATGTCCTAGACAGGTCTTACAATGACTACACATATCAAGACCGACGCCATGTCCCAAAC
AGGTCTTACACTAGCAATCATCTATCGATGCT
Found at i:46943742 original size:20 final size:20
Alignment explanation
Indices: 46943714--46943767 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
46943704 TTAGTCCCGA
*
46943714 ATGCATGTTTTAAGCTTCGT
1 ATGCTTGTTTTAAGCTTCGT
46943734 ATGCTTGTTTTAAGCTTCGT
1 ATGCTTGTTTTAAGCTTCGT
46943754 ATGCTTGTTTTAAG
1 ATGCTTGTTTTAAG
46943768 TAATATTGAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.19, C:0.13, G:0.20, T:0.48
Consensus pattern (20 bp):
ATGCTTGTTTTAAGCTTCGT
Found at i:46948054 original size:59 final size:59
Alignment explanation
Indices: 46947987--46948122 Score: 236
Period size: 59 Copynumber: 2.3 Consensus size: 59
46947977 CAATCATATT
*
46947987 ATTAAATTAACTTTAAAAATAATATAAAATTATAGTTAAAAAGTTGTCCTACTTTTTAA
1 ATTAAATTAACTTTAAAAATAATATAAAATTATAGTTAAAAAGTTGTCCTACTTTTAAA
*
46948046 TTTAAATTAACTTTAAAAATAATATAAAATTATAGTTAAAAAGTTGTCCTACTTTTAAA
1 ATTAAATTAACTTTAAAAATAATATAAAATTATAGTTAAAAAGTTGTCCTACTTTTAAA
46948105 ATTAAATTATTACTTTAA
1 ATTAAATTA--ACTTTAA
46948123 TAAAATTCTA
Statistics
Matches: 72, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
59 65 0.90
61 7 0.10
ACGTcount: A:0.47, C:0.07, G:0.04, T:0.42
Consensus pattern (59 bp):
ATTAAATTAACTTTAAAAATAATATAAAATTATAGTTAAAAAGTTGTCCTACTTTTAAA
Found at i:46948442 original size:15 final size:15
Alignment explanation
Indices: 46948422--46948455 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
46948412 ACATACATGC
*
46948422 TCTACTCTATTCTGT
1 TCTACTCAATTCTGT
*
46948437 TCTACTCAATTTTGT
1 TCTACTCAATTCTGT
46948452 TCTA
1 TCTA
46948456 TTCTGTTCAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.24, G:0.06, T:0.53
Consensus pattern (15 bp):
TCTACTCAATTCTGT
Found at i:46950737 original size:42 final size:42
Alignment explanation
Indices: 46950689--46950873 Score: 235
Period size: 42 Copynumber: 4.4 Consensus size: 42
46950679 CCACACGACC
* * *
46950689 AAGGACATAGACGTGTGCCCAGGTCGTGTGAGCCACACAGGT
1 AAGGACATGGGCGTGTGCCCAGGTCGTGTGAGCCACACGGGT
46950731 AAGGACATGGGCGTGTGCCCAGGTCGTGTGAGCCACACGGGT
1 AAGGACATGGGCGTGTGCCCAGGTCGTGTGAGCCACACGGGT
* * * *
46950773 AAAGACATGGGCATGTGCCCAGGTTGTGTAAGCCACACGGGT
1 AAGGACATGGGCGTGTGCCCAGGTCGTGTGAGCCACACGGGT
** * * *
46950815 AAGGACATGGGCGTGTGCCTGGGTCATATAAGCCACACGGGT
1 AAGGACATGGGCGTGTGCCCAGGTCGTGTGAGCCACACGGGT
** *
46950857 AAAAACATGGGCATGTG
1 AAGGACATGGGCGTGTG
46950874 TTCAGGCTGT
Statistics
Matches: 126, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 126 1.00
ACGTcount: A:0.25, C:0.22, G:0.35, T:0.18
Consensus pattern (42 bp):
AAGGACATGGGCGTGTGCCCAGGTCGTGTGAGCCACACGGGT
Found at i:46950819 original size:84 final size:84
Alignment explanation
Indices: 46950702--46950887 Score: 264
Period size: 84 Copynumber: 2.2 Consensus size: 84
46950692 GACATAGACG
* * * * *
46950702 TGTGCCCAGGTCGTGTGAGCCACACAGGTAAGGACATGGGCGTGTGCCCAGGTCGTGTGAGCCAC
1 TGTGCCCAGGTTGTGTAAGCCACACAGGTAAGGACATGGGCGTGTGCCCAGGTCATATAAGCCAC
*
46950767 ACGGGTAAAGACATGGGCA
66 ACGGGTAAAAACATGGGCA
* **
46950786 TGTGCCCAGGTTGTGTAAGCCACACGGGTAAGGACATGGGCGTGTGCCTGGGTCATATAAGCCAC
1 TGTGCCCAGGTTGTGTAAGCCACACAGGTAAGGACATGGGCGTGTGCCCAGGTCATATAAGCCAC
46950851 ACGGGTAAAAACATGGGCA
66 ACGGGTAAAAACATGGGCA
** *
46950870 TGTGTTCAGGCTGTGTAA
1 TGTGCCCAGGTTGTGTAA
46950888 CTCACTGTTT
Statistics
Matches: 90, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
84 90 1.00
ACGTcount: A:0.24, C:0.22, G:0.35, T:0.20
Consensus pattern (84 bp):
TGTGCCCAGGTTGTGTAAGCCACACAGGTAAGGACATGGGCGTGTGCCCAGGTCATATAAGCCAC
ACGGGTAAAAACATGGGCA
Found at i:46950971 original size:42 final size:42
Alignment explanation
Indices: 46950924--46951011 Score: 142
Period size: 42 Copynumber: 2.1 Consensus size: 42
46950914 CAAGTAGATA
*
46950924 ACATAGGCGTGTGCCCAGGC-CGTATGAGCCACACGAGCAAGG
1 ACATAGGCGTGTGCCCAAGCTC-TATGAGCCACACGAGCAAGG
*
46950966 ACATAGGCGTGTGCCCAAGCTCTGTGAGCCACACGAGCAAGG
1 ACATAGGCGTGTGCCCAAGCTCTATGAGCCACACGAGCAAGG
46951008 ACAT
1 ACAT
46951012 GAACGTGTGT
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
42 42 0.98
43 1 0.02
ACGTcount: A:0.27, C:0.28, G:0.31, T:0.14
Consensus pattern (42 bp):
ACATAGGCGTGTGCCCAAGCTCTATGAGCCACACGAGCAAGG
Found at i:46954159 original size:21 final size:21
Alignment explanation
Indices: 46954135--46954237 Score: 111
Period size: 21 Copynumber: 4.8 Consensus size: 21
46954125 ACATACACAT
*
46954135 ATATATATAATAGTATTAGAA
1 ATATATATAATAATATTAGAA
46954156 ATATATA-ATATAATATTAGAA
1 ATATATATA-ATAATATTAGAA
**
46954177 ATATATATAATAGTATAAAAGAA
1 ATATATATAATA--ATATTAGAA
*
46954200 AAATATAACTAATAATATTA-AA
1 ATATAT-A-TAATAATATTAGAA
46954222 ATATATATAATAATAT
1 ATATATATAATAATAT
46954238 ATGTGAAATA
Statistics
Matches: 69, Mismatches: 7, Indels: 13
0.78 0.08 0.15
Matches are distributed among these distances:
20 10 0.14
21 29 0.42
22 8 0.12
23 16 0.23
24 1 0.01
25 5 0.07
ACGTcount: A:0.58, C:0.01, G:0.05, T:0.36
Consensus pattern (21 bp):
ATATATATAATAATATTAGAA
Found at i:46954182 original size:23 final size:23
Alignment explanation
Indices: 46954133--46954249 Score: 90
Period size: 23 Copynumber: 5.2 Consensus size: 23
46954123 ATACATACAC
*
46954133 ATATATAT-ATAATAGTATTAG-A
1 ATATATATAAT-ATAATATTAGAA
46954155 A-ATATATAATATAATATTAGAA
1 ATATATATAATATAATATTAGAA
**
46954177 ATATATATAATAGT-ATAAAAGAA
1 ATATATATAATA-TAATATTAGAA
46954200 A-A-ATATAACTAATAATATTA-AA
1 ATATATATAA-T-ATAATATTAGAA
46954222 ATATATATAATA-ATATATGT-GAA
1 ATATATATAATATA-ATAT-TAGAA
46954245 ATATA
1 ATATA
46954250 ATATTAAAAA
Statistics
Matches: 78, Mismatches: 5, Indels: 23
0.74 0.05 0.22
Matches are distributed among these distances:
21 22 0.28
22 16 0.21
23 33 0.42
24 7 0.09
ACGTcount: A:0.57, C:0.01, G:0.06, T:0.36
Consensus pattern (23 bp):
ATATATATAATATAATATTAGAA
Found at i:46956455 original size:73 final size:73
Alignment explanation
Indices: 46956298--46956459 Score: 236
Period size: 73 Copynumber: 2.2 Consensus size: 73
46956288 ACATAAACTG
* * *
46956298 AAAATAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGCCTCAACTCACCTCTCGCAATATGAGTTG
46956363 ATTTTTGA
66 ATTTTTGA
* * * * *
46956371 CAAACGGAAATTGAAATTACCTCATCGTGTCCTGAGCCTCAACTCACCTCTTGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGCCTCAACTCACCTCTCGCAATATGAGTTG
46956436 ATTTTTGA
66 ATTTTTGA
*
46956444 AAAACATAAATT-AAAA
1 AAAACAGAAATTGAAAA
46956460 CGAAAATTGA
Statistics
Matches: 77, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
72 3 0.04
73 74 0.96
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30
Consensus pattern (73 bp):
AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGCCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTGA
Found at i:46956586 original size:157 final size:158
Alignment explanation
Indices: 46956258--46956765 Score: 521
Period size: 160 Copynumber: 3.2 Consensus size: 158
46956248 GACTTATAAA
*
46956258 CTCTCGCAATATGAGTTGATTTTCTGAAAAACATAAACTGAAAATAGAAATTGAAAATACCTCAG
1 CTCTCGCAATATGAGTTGATTTT-TGAAAAACATAAACTGAAAAGAGAAATTGAAAATACCTCAG
* * * *
46956323 CGTGTCCTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTGACAAACGGAAATTGAAAT
65 CGAGTCCTGAGGCTCAACTCATCTCTCGCAATATGACTTGATTTCTGA-AAACAGAAATTGAAAT
*
46956388 TACCTCATCGTGTCCTGAGCCTCAACTCAC
129 TACCTCAACGTGTCCTGAGCCTCAACTCAC
* * *
46956418 CTCTTGCAATATGAGTTGATTTTTGAAAAACATAAA-TTAAAACGA-AAATTGAGAATACCTCAG
1 CTCTCGCAATATGAGTTGATTTTTGAAAAACATAAACTGAAAA-GAGAAATTGAAAATACCT---
* * * *
46956481 CAGGCGAGT-C-GAGGCTCCACTCATCTCTTGCAATATGACTTGA-TTCTG-GAACATAAATTGA
62 CA-GCGAGTCCTGAGGCTCAACTCATCTCTCGCAATATGACTTGATTTCTGAAAACAGAAATTGA
* *
46956542 AATTACCTCAACGTGTCTTGAGGCTCAACTCAC
126 AATTACCTCAACGTGTCCTGAGCCTCAACTCAC
* * *
46956575 CTCTCGCAATATGAGTTGATTTCTTGAGAAGCATGAACTGAAAAGCAGAAATT-AAAGATACCTC
1 CTCTCGCAATATGAGTTGATTT-TTGAAAAACATAAACTGAAAAG-AGAAATTGAAA-ATACCTC
* * * ** * * * ** * *
46956639 ATCGTGCCCCAAGGCTCAACTCACCTGTCGCAATATGAGTTGAAAT-TAAAACACAAAAATTGAA
63 AGCGAGTCCTGAGGCTCAACTCATCTCTCGCAATATGACTTGATTTCTGAAA-ACAGAAATTGAA
* * * * *
46956703 AATACCTCAGCGTGCCCCGAGGCTCAACTCAC
127 ATTACCTCAACGTGTCCTGAGCCTCAACTCAC
* *
46956735 CTCTAGCAAAATGAGTTGA-TTTTGAAAAACA
1 CTCTCGCAATATGAGTTGATTTTTGAAAAACA
46956766 AAAAATTAAA
Statistics
Matches: 290, Mismatches: 43, Indels: 32
0.79 0.12 0.09
Matches are distributed among these distances:
156 3 0.01
157 64 0.22
158 67 0.23
159 30 0.10
160 118 0.41
161 3 0.01
162 5 0.02
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.27
Consensus pattern (158 bp):
CTCTCGCAATATGAGTTGATTTTTGAAAAACATAAACTGAAAAGAGAAATTGAAAATACCTCAGC
GAGTCCTGAGGCTCAACTCATCTCTCGCAATATGACTTGATTTCTGAAAACAGAAATTGAAATTA
CCTCAACGTGTCCTGAGCCTCAACTCAC
Found at i:46956767 original size:72 final size:72
Alignment explanation
Indices: 46956613--46956775 Score: 204
Period size: 72 Copynumber: 2.2 Consensus size: 72
46956603 AAGCATGAAC
* * * * * *
46956613 TGAAAAGCAGAAATTAAAGATACCTCATCGTGCCCCAAGGCTCAACTCACCTGTCGCAATATGAG
1 TGAAAAACAAAAATTAAAGATACCTCAGCGTGCCCCAAGGCTCAACTCACCTCTAGCAAAATGAG
46956678 TTGAAAT
66 TTGAAAT
*
46956685 T-AAAACACAAAAATTGAAA-ATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAAATG
1 TGAAAA-ACAAAAATT-AAAGATACCTCAGCGTGCCCCAAGGCTCAACTCACCTCTAGCAAAATG
**
46956748 AGTTGATTT
64 AGTTGAAAT
46956757 TGAAAAACAAAAAATTAAA
1 TGAAAAAC-AAAAATTAAA
46956776 AGGCTTAACT
Statistics
Matches: 78, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
71 4 0.05
72 60 0.77
73 14 0.18
ACGTcount: A:0.41, C:0.22, G:0.15, T:0.21
Consensus pattern (72 bp):
TGAAAAACAAAAATTAAAGATACCTCAGCGTGCCCCAAGGCTCAACTCACCTCTAGCAAAATGAG
TTGAAAT
Found at i:46956872 original size:123 final size:124
Alignment explanation
Indices: 46956649--46956897 Score: 369
Period size: 123 Copynumber: 2.0 Consensus size: 124
46956639 ATCGTGCCCC
* * *
46956649 AAGGCTCAACTCACCTGTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGC
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGC
46956714 GTGCCCCGAGGCTCAACTCACCTCTAGCAAAATGAGTTGATTTTGAAAAACAAAAAATTAA
66 GTGCCCCGAGGCTCAACTCACCTCTAGCAAAATGAGTTGATTTTG-AAAAC-AAAAATTAA
* * * *
46956775 AAGGCTTAACTCACCTCTCGCAATATGAG-T-CAATTTAAA-ACATAAACTAAAAATACCTCAGC
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGC
* * *
46956837 GTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAA
66 GTGCCCCGAGGCTCAACTCACCTCTAGCAAAATGAGTTGATTTTGAAAACAAAAATTAA
46956896 AA
1 AA
46956898 ATACCTCAAC
Statistics
Matches: 113, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
121 11 0.10
122 5 0.04
123 62 0.55
124 7 0.06
125 1 0.01
126 27 0.24
ACGTcount: A:0.40, C:0.22, G:0.14, T:0.24
Consensus pattern (124 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGC
GTGCCCCGAGGCTCAACTCACCTCTAGCAAAATGAGTTGATTTTGAAAACAAAAATTAA
Found at i:46956920 original size:71 final size:70
Alignment explanation
Indices: 46956775--46956951 Score: 223
Period size: 71 Copynumber: 2.5 Consensus size: 70
46956765 AAAAAATTAA
* * * * *
46956775 AAGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAACATAAACTAAAAATACCTCAGCGT
1 AAGGCTTAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACCTCAACGT
46956839 GCCCC
66 GCCCC
* * *
46956844 GAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACG
1 AAGGCTTAACTCACTTCTCGCAATATGAGTTGATTTT-AAAACAAAAACTAAAAATACCTCAACG
* **
46956909 TGTCTT
65 TGCCCC
46956915 AAGGCTTAACTCA-TCTCTCGCAATATGAGTTGATTTT
1 AAGGCTTAACTCACT-TCTCGCAATATGAGTTGATTTT
46956952 CCTTGAAAAG
Statistics
Matches: 92, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
69 26 0.28
70 6 0.07
71 60 0.65
ACGTcount: A:0.35, C:0.23, G:0.14, T:0.29
Consensus pattern (70 bp):
AAGGCTTAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACCTCAACGT
GCCCC
Found at i:46976795 original size:5 final size:5
Alignment explanation
Indices: 46976785--46976822 Score: 69
Period size: 5 Copynumber: 7.8 Consensus size: 5
46976775 TTCAAAAATT
46976785 AATAA AATAA AAT-A AATAA AATAA AATAA AATAA AATA
1 AATAA AATAA AATAA AATAA AATAA AATAA AATAA AATA
46976823 GGATAGATAA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 4 0.12
5 28 0.88
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
AATAA
Found at i:46976801 original size:9 final size:9
Alignment explanation
Indices: 46976789--46976819 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
46976779 AAAATTAATA
46976789 AAATAAAAT
1 AAATAAAAT
46976798 AAATAAAAT
1 AAATAAAAT
46976807 AAAATAAAAT
1 -AAATAAAAT
46976817 AAA
1 AAA
46976820 ATAGGATAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:46976802 original size:14 final size:14
Alignment explanation
Indices: 46976779--46976822 Score: 70
Period size: 14 Copynumber: 3.1 Consensus size: 14
46976769 AGAATCTTCA
*
46976779 AAAATTAATAAAAT
1 AAAATAAATAAAAT
46976793 AAAATAAATAAAAT
1 AAAATAAATAAAAT
46976807 AAAATAAAATAAAAT
1 AAAAT-AAATAAAAT
46976822 A
1 A
46976823 GGATAGATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
14 18 0.64
15 10 0.36
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (14 bp):
AAAATAAATAAAAT
Found at i:46983386 original size:40 final size:39
Alignment explanation
Indices: 46983338--46983417 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 39
46983328 TTGCAGATAC
46983338 TTTTTTAATATCGAGTGTATACATATACACCAACTTCCA
1 TTTTTTAATATCGAGTGTATACATATACACCAACTTCCA
46983377 TTTTCTTAATATCGAGTGTATACATATACACCAACTTCCA
1 TTTT-TTAATATCGAGTGTATACATATACACCAACTTCCA
46983417 T
1 T
46983418 ACTTAACCAT
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
39 4 0.10
40 36 0.90
ACGTcount: A:0.33, C:0.21, G:0.07, T:0.39
Consensus pattern (39 bp):
TTTTTTAATATCGAGTGTATACATATACACCAACTTCCA
Found at i:46987638 original size:30 final size:30
Alignment explanation
Indices: 46987593--46987652 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
46987583 ATTTAATACG
*
46987593 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
46987623 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
46987653 GGCTCGGCAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:46989893 original size:16 final size:15
Alignment explanation
Indices: 46989868--46989903 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
46989858 TTTTCTTAAT
46989868 TTATTAATTATTATA
1 TTATTAATTATTATA
*
46989883 TTATATAATTATTATT
1 TTAT-TAATTATTATA
46989899 TTATT
1 TTATT
46989904 TAAATTATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (15 bp):
TTATTAATTATTATA
Found at i:46990640 original size:41 final size:39
Alignment explanation
Indices: 46990592--46990696 Score: 108
Period size: 38 Copynumber: 2.7 Consensus size: 39
46990582 TCGACCTCGA
* *
46990592 GTCGATGAGACACTGGGTGTCATACTATTACTTCGGATAG
1 GTCGATGAGATACTGGGTGTCACACT-TTACTTCGGATAG
* * * *
46990632 ATTCGATGAGGTACTGGGT-AC-CACTTTACTTCGGCTAG
1 -GTCGATGAGATACTGGGTGTCACACTTTACTTCGGATAG
*
46990670 GCCGATGAGATACTGGGTGTCA-ACTTT
1 GTCGATGAGATACTGGGTGTCACACTTT
46990697 TCTTTAAACT
Statistics
Matches: 52, Mismatches: 10, Indels: 7
0.75 0.14 0.10
Matches are distributed among these distances:
37 15 0.29
38 18 0.35
39 3 0.06
40 1 0.02
41 15 0.29
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (39 bp):
GTCGATGAGATACTGGGTGTCACACTTTACTTCGGATAG
Found at i:46991445 original size:42 final size:42
Alignment explanation
Indices: 46991398--46991486 Score: 171
Period size: 42 Copynumber: 2.1 Consensus size: 42
46991388 ATTAAAAATG
46991398 ATAGTAGAATTTTCATTACTTAAGTTGTTAAGTCAATATGTT
1 ATAGTAGAATTTTCATTACTTAAGTTGTTAAGTCAATATGTT
46991440 ATAGTAGAATTTTCATTACTTAAGTTGTTAAGTCAATATGTT
1 ATAGTAGAATTTTCATTACTTAAGTTGTTAAGTCAATATGTT
46991482 A-AGTA
1 ATAGTA
46991487 TGATTCAAGT
Statistics
Matches: 47, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
41 4 0.09
42 43 0.91
ACGTcount: A:0.35, C:0.07, G:0.15, T:0.44
Consensus pattern (42 bp):
ATAGTAGAATTTTCATTACTTAAGTTGTTAAGTCAATATGTT
Found at i:46993745 original size:26 final size:26
Alignment explanation
Indices: 46993716--46993823 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
46993706 TGGTACAAAT
46993716 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
46993742 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
46993768 TGATAATGGGTTAGATAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
46993794 TGTTAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
46993820 TGAT
1 TGAT
46993824 GGGAATTTCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:46995327 original size:26 final size:26
Alignment explanation
Indices: 46995298--46995350 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
46995288 TTTACAGTTT
*
46995298 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCATAGG-GATAAATTGACCGAAA
* *
46995324 TACCCATAGGGTTAAATTGACCTAAA
1 TACCCATAGGGATAAATTGACCGAAA
46995350 T
1 T
46995351 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCATAGGGATAAATTGACCGAAA
Found at i:46995388 original size:21 final size:21
Alignment explanation
Indices: 46995362--46995401 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
46995352 CATGTTTGAC
46995362 TGTTGTTATT-TCTGCATGCCA
1 TGTTGTTATTATCTG-ATGCCA
46995383 TGTTGTTATTATCTGATGC
1 TGTTGTTATTATCTGATGC
46995402 ATGGGACTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.15, C:0.15, G:0.20, T:0.50
Consensus pattern (21 bp):
TGTTGTTATTATCTGATGCCA
Found at i:46999895 original size:16 final size:15
Alignment explanation
Indices: 46999870--46999905 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
46999860 TTTTCTTAAT
46999870 TTATTAATTATTATA
1 TTATTAATTATTATA
*
46999885 TTATATAATTATTATT
1 TTAT-TAATTATTATA
46999901 TTATT
1 TTATT
46999906 TAAATTATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (15 bp):
TTATTAATTATTATA
Found at i:47000255 original size:16 final size:16
Alignment explanation
Indices: 47000217--47000258 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
47000207 TATTATAGTG
47000217 TATT-ATTATTAATTTA
1 TATTAATTA-TAATTTA
*
47000233 T-TAAATTATAATTTA
1 TATTAATTATAATTTA
47000248 TATTAATTATA
1 TATTAATTATA
47000259 TTATGAGATT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 9 0.41
16 13 0.59
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
TATTAATTATAATTTA
Found at i:47001820 original size:38 final size:39
Alignment explanation
Indices: 47001718--47001826 Score: 105
Period size: 38 Copynumber: 2.8 Consensus size: 39
47001708 AACCTCGAGT
* **
47001718 CGATGAGACACTAGGTGTCATACTATTACTTCGGATAGATT
1 CGATGAGACACTGGGTGTCA-ACT-TTACTTCGGATAGAGC
* * * * *
47001759 TGATGAGATACTGGGT-ACCACTTTACTTCGGCTAG-GC
1 CGATGAGACACTGGGTGTCAACTTTACTTCGGATAGAGC
*
47001796 CGATGAGACACTGGGTGTCAACTTTGCTTCG
1 CGATGAGACACTGGGTGTCAACTTTACTTCG
47001827 AACTATTCGA
Statistics
Matches: 54, Mismatches: 13, Indels: 5
0.75 0.18 0.07
Matches are distributed among these distances:
37 14 0.26
38 23 0.43
39 3 0.06
40 1 0.02
41 13 0.24
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAACTTTACTTCGGATAGAGC
Found at i:47003074 original size:8 final size:8
Alignment explanation
Indices: 47003063--47003092 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
47003053 TTGTTATTGG
47003063 TTTTTTTA
1 TTTTTTTA
47003071 TTTTTTTTA
1 -TTTTTTTA
47003080 TTTTTTTA
1 TTTTTTTA
47003088 TTTTT
1 TTTTT
47003093 ATTTTATTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (8 bp):
TTTTTTTA
Found at i:47003077 original size:9 final size:9
Alignment explanation
Indices: 47003063--47003092 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
47003053 TTGTTATTGG
47003063 TTTTTTTAT
1 TTTTTTTAT
47003072 TTTTTTTA-
1 TTTTTTTAT
47003080 TTTTTTTAT
1 TTTTTTTAT
47003089 TTTT
1 TTTT
47003093 ATTTTATTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.40
9 12 0.60
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (9 bp):
TTTTTTTAT
Found at i:47015824 original size:20 final size:21
Alignment explanation
Indices: 47015786--47015825 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
47015776 CTGCAACTGT
47015786 CACCAATTTCCTCGTGAACCC
1 CACCAATTTCCTCGTGAACCC
*
47015807 CACCATTTTCCTCG-GAACC
1 CACCAATTTCCTCGTGAACC
47015826 ATTCAAAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.23, C:0.42, G:0.10, T:0.25
Consensus pattern (21 bp):
CACCAATTTCCTCGTGAACCC
Done.