Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 147 of 356
Found at i:47230935 original size:40 final size:40
Alignment explanation
Indices: 47230833--47230937 Score: 115
Period size: 40 Copynumber: 2.6 Consensus size: 40
47230823 GGCTGTCACA
* *
47230833 GCACATTCGTGCCTCTGTTTGCATTTCAGTGCCTCTGTAT
1 GCACATTAGTGCCTCTGTTTGCACTTCAGTGCCTCTGTAT
* * *
47230873 ACA-ATTCAGTGTCTCTATTTGCACTTCAGTGCCTCTG-ATT
1 GCACATT-AGTGCCTCTGTTTGCACTTCAGTGCCTCTGTA-T
* *
47230913 GCACATTTGTGCCTCTGGTTGCACT
1 GCACATTAGTGCCTCTGTTTGCACT
47230938 ATGGTGCCTC
Statistics
Matches: 52, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
39 4 0.08
40 45 0.87
41 3 0.06
ACGTcount: A:0.15, C:0.27, G:0.19, T:0.39
Consensus pattern (40 bp):
GCACATTAGTGCCTCTGTTTGCACTTCAGTGCCTCTGTAT
Found at i:47230944 original size:20 final size:20
Alignment explanation
Indices: 47230901--47230948 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
47230891 TTGCACTTCA
*
47230901 GTGCCTCTGATTGCACATTT
1 GTGCCTCTGATTGCACATTG
*
47230921 GTGCCTCTGGTTGCAC-TATG
1 GTGCCTCTGATTGCACAT-TG
47230941 GTGCCTCT
1 GTGCCTCT
47230949 ATATAGCATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 1 0.04
20 24 0.96
ACGTcount: A:0.10, C:0.27, G:0.25, T:0.38
Consensus pattern (20 bp):
GTGCCTCTGATTGCACATTG
Found at i:47240952 original size:42 final size:42
Alignment explanation
Indices: 47240905--47240989 Score: 136
Period size: 42 Copynumber: 2.0 Consensus size: 42
47240895 GAGACATGGC
*
47240905 CGTGTCTGGAGCCGTGTGAGGCAC-TCGGCCTGTTCATACGAG
1 CGTGTCTGGAGCCGTGTGAGGCACAT-GGCCTGTTCACACGAG
*
47240947 CGTGTCTGGAGTCGTGTGAGGCACATGGCCTGTTCACACGAG
1 CGTGTCTGGAGCCGTGTGAGGCACATGGCCTGTTCACACGAG
47240989 C
1 C
47240990 ATTCGTATAA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
42 39 0.98
43 1 0.03
ACGTcount: A:0.15, C:0.26, G:0.35, T:0.24
Consensus pattern (42 bp):
CGTGTCTGGAGCCGTGTGAGGCACATGGCCTGTTCACACGAG
Found at i:47243701 original size:30 final size:30
Alignment explanation
Indices: 47243661--47243760 Score: 137
Period size: 30 Copynumber: 3.3 Consensus size: 30
47243651 GGTTGCTCTA
* * **
47243661 GGTGAAATGAACTCGAACCGCTTATGTTCG
1 GGTGATATGAACTTGAACCGCCAATGTTCG
* *
47243691 GGTGATATGAACTTGAACCGCCCATGTCCG
1 GGTGATATGAACTTGAACCGCCAATGTTCG
*
47243721 AGTGATATGAACTTGAACCGCCAATGTTCG
1 GGTGATATGAACTTGAACCGCCAATGTTCG
47243751 GGTGATATGA
1 GGTGATATGA
47243761 TGTGCTCTGC
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 61 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (30 bp):
GGTGATATGAACTTGAACCGCCAATGTTCG
Found at i:47246312 original size:13 final size:13
Alignment explanation
Indices: 47246294--47246318 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
47246284 CTTTTAAATT
47246294 TTTAAATTTTTAA
1 TTTAAATTTTTAA
47246307 TTTAAATTTTTA
1 TTTAAATTTTTA
47246319 CTTTTTTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
TTTAAATTTTTAA
Found at i:47246370 original size:17 final size:17
Alignment explanation
Indices: 47246327--47246377 Score: 57
Period size: 17 Copynumber: 2.8 Consensus size: 17
47246317 TACTTTTTTT
* *
47246327 AATATATGTATTTTAAAA
1 AATATAT-TTTTTTTAAA
47246345 AAGTCATATTTTTTTTAAA
1 AA-T-ATATTTTTTTTAAA
47246364 AATATATTTTTTTT
1 AATATATTTTTTTT
47246378 TATTTTTTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
17 11 0.38
18 3 0.10
19 11 0.38
20 4 0.14
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.55
Consensus pattern (17 bp):
AATATATTTTTTTTAAA
Found at i:47246525 original size:24 final size:25
Alignment explanation
Indices: 47246494--47246540 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
47246484 ATCATAATTT
* *
47246494 AAATAATT-ATATGTAAAATTAAAA
1 AAATAATTAAAATATAAAATTAAAA
47246518 AAATAATTAAAATATAAAATTAA
1 AAATAATTAAAATATAAAATTAA
47246541 GATATACATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 8 0.40
25 12 0.60
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (25 bp):
AAATAATTAAAATATAAAATTAAAA
Found at i:47246670 original size:14 final size:12
Alignment explanation
Indices: 47246644--47246717 Score: 50
Period size: 12 Copynumber: 6.2 Consensus size: 12
47246634 TAAAATTTTA
47246644 AAAAATAATTTC
1 AAAAATAATTTC
47246656 AAAAATATATATTC
1 AAAAATA-AT-TTC
*
47246670 AAAAAT--TTTT
1 AAAAATAATTTC
47246680 AAAAA-AATATT-
1 AAAAATAAT-TTC
47246691 ATAAAAT-ATTTC
1 A-AAAATAATTTC
*
47246703 AAATATACATTTC
1 AAAAATA-ATTTC
47246716 AA
1 AA
47246718 GTTTTTTAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 19
0.70 0.03 0.27
Matches are distributed among these distances:
10 7 0.14
11 9 0.18
12 16 0.32
13 9 0.18
14 9 0.18
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.36
Consensus pattern (12 bp):
AAAAATAATTTC
Found at i:47246751 original size:9 final size:9
Alignment explanation
Indices: 47246724--47246800 Score: 57
Period size: 10 Copynumber: 8.0 Consensus size: 9
47246714 TCAAGTTTTT
*
47246724 TAAAATTAA
1 TAAAATAAA
47246733 TAATAATAAA
1 TAA-AATAAA
47246743 TAAAATAAA
1 TAAAATAAA
47246752 T-AAATAAA
1 TAAAATAAA
*
47246760 TAAGAAGAATA
1 TAA-AATAA-A
*
47246771 AAAAACTAAA
1 TAAAA-TAAA
*
47246781 AAAAAGTAAA
1 TAAAA-TAAA
47246791 TAAATATAAA
1 TAAA-ATAAA
47246801 CTTAAAAAGA
Statistics
Matches: 56, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
8 8 0.14
9 11 0.20
10 31 0.55
11 6 0.11
ACGTcount: A:0.73, C:0.01, G:0.04, T:0.22
Consensus pattern (9 bp):
TAAAATAAA
Found at i:47246759 original size:17 final size:16
Alignment explanation
Indices: 47246737--47246796 Score: 59
Period size: 17 Copynumber: 3.5 Consensus size: 16
47246727 AATTAATAAT
47246737 AATAAATAAAATAAATA
1 AATAAATAAAA-AAATA
*
47246754 AATAAATAAGAAGAATA
1 AATAAATAA-AAAAATA
47246771 AA-AAACTAAAAAAAAGTA
1 AATAAA-T-AAAAAAA-TA
47246789 AATAAATA
1 AATAAATA
47246797 TAAACTTAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
16 3 0.08
17 21 0.58
18 9 0.25
19 3 0.08
ACGTcount: A:0.75, C:0.02, G:0.05, T:0.18
Consensus pattern (16 bp):
AATAAATAAAAAAATA
Found at i:47246801 original size:25 final size:25
Alignment explanation
Indices: 47246773--47246821 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
47246763 GAAGAATAAA
*
47246773 AAAC-TAAAAAAAAGTAAATAAATAT
1 AAACTTAAAAAAAAG-AAAAAAATAT
*
47246798 AAACTTAAAAAGAAGAAAAAAATA
1 AAACTTAAAAAAAAGAAAAAAATA
47246822 ATAAGCCAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 12 0.57
26 9 0.43
ACGTcount: A:0.73, C:0.04, G:0.06, T:0.16
Consensus pattern (25 bp):
AAACTTAAAAAAAAGAAAAAAATAT
Found at i:47246825 original size:26 final size:26
Alignment explanation
Indices: 47246767--47246825 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
47246757 AAATAAGAAG
* *
47246767 AATAAAAAACTAAAAAAAAGTAAATA
1 AATAATAAACTAAAAAAAAGTAAAAA
*
47246793 AAT-ATAAACTTAAAAAGAAG-AAAAA
1 AATAATAAAC-TAAAAAAAAGTAAAAA
47246818 AATAATAA
1 AATAATAA
47246826 GCCAATTCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
25 12 0.43
26 16 0.57
ACGTcount: A:0.75, C:0.03, G:0.05, T:0.17
Consensus pattern (26 bp):
AATAATAAACTAAAAAAAAGTAAAAA
Found at i:47250087 original size:18 final size:18
Alignment explanation
Indices: 47250066--47250128 Score: 65
Period size: 18 Copynumber: 3.4 Consensus size: 18
47250056 ATTAATATAT
*
47250066 TAATTATGATTATAATTA
1 TAATTATGATTACAATTA
47250084 TAATTATGAGTTACGAATTA
1 TAATTATGA-TTAC-AATTA
* *
47250104 TGATTGATGA-TGCAATTA
1 TAATT-ATGATTACAATTA
47250122 TAATTAT
1 TAATTAT
47250129 TAGAATTAGA
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
17 2 0.05
18 18 0.47
19 5 0.13
20 9 0.24
21 4 0.11
ACGTcount: A:0.40, C:0.03, G:0.13, T:0.44
Consensus pattern (18 bp):
TAATTATGATTACAATTA
Found at i:47251296 original size:12 final size:12
Alignment explanation
Indices: 47251281--47251324 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
47251271 TATATATATG
47251281 TATATTTAATTT
1 TATATTTAATTT
*
47251293 TATA-TAAATTT
1 TATATTTAATTT
47251304 TATAATTTAATTT
1 TAT-ATTTAATTT
*
47251317 TTTATTTA
1 TATATTTA
47251325 TAATATGATA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
11 9 0.33
12 10 0.37
13 8 0.30
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (12 bp):
TATATTTAATTT
Found at i:47258830 original size:23 final size:22
Alignment explanation
Indices: 47258794--47258854 Score: 63
Period size: 23 Copynumber: 2.8 Consensus size: 22
47258784 ACTGACATAT
* *
47258794 AATAATTAATTTTTAATAGTAAA
1 AATAAATAAATTTTAATAG-AAA
47258817 AATAAATAAATTTTTAATAGAAA
1 AATAAATAAA-TTTTAATAGAAA
*
47258840 AAT-CA-AAATTTTAAT
1 AATAAATAAATTTTAAT
47258855 CTAAGGTATA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
20 7 0.21
21 3 0.09
22 1 0.03
23 14 0.41
24 9 0.26
ACGTcount: A:0.56, C:0.02, G:0.03, T:0.39
Consensus pattern (22 bp):
AATAAATAAATTTTAATAGAAA
Found at i:47259979 original size:11 final size:11
Alignment explanation
Indices: 47259963--47259987 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
47259953 AATTTTACTA
47259963 TTAAAATTAGG
1 TTAAAATTAGG
47259974 TTAAAATTAGG
1 TTAAAATTAGG
47259985 TTA
1 TTA
47259988 TATTCAAATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.16, T:0.40
Consensus pattern (11 bp):
TTAAAATTAGG
Found at i:47260050 original size:17 final size:17
Alignment explanation
Indices: 47260022--47260081 Score: 66
Period size: 17 Copynumber: 3.5 Consensus size: 17
47260012 AATGATTGAT
*
47260022 ATTCAGTTTTGAGTCAA
1 ATTCAATTTTGAGTCAA
* * * *
47260039 ATTTAATTTTGATTGAT
1 ATTCAATTTTGAGTCAA
*
47260056 ATTCAGTTTTGAGTCAA
1 ATTCAATTTTGAGTCAA
47260073 ATTCAATTT
1 ATTCAATTT
47260082 AAGAATCATG
Statistics
Matches: 32, Mismatches: 11, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
17 32 1.00
ACGTcount: A:0.30, C:0.08, G:0.13, T:0.48
Consensus pattern (17 bp):
ATTCAATTTTGAGTCAA
Found at i:47260054 original size:34 final size:34
Alignment explanation
Indices: 47260014--47260081 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
47260004 TGGCTAAAAA
*
47260014 TGATTGATATTCAGTTTTGAGTCAAATTTAATTT
1 TGATTGATATTCAGTTTTGAGTCAAATTCAATTT
47260048 TGATTGATATTCAGTTTTGAGTCAAATTCAATTT
1 TGATTGATATTCAGTTTTGAGTCAAATTCAATTT
47260082 AAGAATCATG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.29, C:0.07, G:0.15, T:0.49
Consensus pattern (34 bp):
TGATTGATATTCAGTTTTGAGTCAAATTCAATTT
Found at i:47264778 original size:48 final size:48
Alignment explanation
Indices: 47264705--47265038 Score: 319
Period size: 50 Copynumber: 6.8 Consensus size: 48
47264695 CACATTATGG
*
47264705 GAGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGA
* * * * *
47264753 GAGCTAGTGTAATACAATGTCTGGGACATGGCATCGGCCTCGAGATATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAG--ATGA
* * * *** **
47264803 AAGCTAGTGTAAGACCATGTCTAGGACATGGCATCAATACCGACAGATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTG--AGATGA
* *
47264853 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGATATATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTG--AGATGA
* * * * *
47264903 GAGTCAGTGTAAGACCATGTCTGAGACATGGCATCGACTTTGATG-TGT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA-GATGA
** * * * *
47264951 GAGCCAGTGTAAGACCATGTCCAGGACATGGCATCGACTTTGATATGT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGA
* * * *
47264999 GAGCCAGTGTGAGACCATGTCCGAGACATGGCGTCGGCAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
47265039 CTTACCCTAT
Statistics
Matches: 237, Mismatches: 43, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
48 117 0.49
50 118 0.50
52 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGA
Found at i:47264960 original size:148 final size:146
Alignment explanation
Indices: 47264664--47264985 Score: 388
Period size: 148 Copynumber: 2.2 Consensus size: 146
47264654 TATGTGTGCT
* * * *
47264664 AGTGTAAGA-CATGTCTGGGACAT-GCA-CCAACCACATTATGGGAGCCAATGTAAGACCATGTC
1 AGTGTAAGACCATGTCTAGGACATGGCATCAAACCACATGATGAGAGCCAATGTAAGACCATGTC
* * *
47264726 TGGGACATGGCATCGGCATTGAGATGAGAGCTAGTGTAATACAATGTCTGGGACATGGCATCGGC
66 TGGGACATGGCATCGGCATTGAGATGAGAGCTAGTGTAAGACAATGTCTGAGACATGGCATCGAC
*
47264791 CTCGAGATATGAAAGCT
131 CTCGAGATATG-AAGCC
*
47264808 AGTGTAAGACCATGTCTAGGACATGGCATCAATACCGACA-GATGAGAGCCAGTGTAAGACCATG
1 AGTGTAAGACCATGTCTAGGACATGGCATCAA-ACC-ACATGATGAGAGCCAATGTAAGACCATG
* * *
47264872 TCTGGGACATGGCATCGGCCTTGATATATGAGAG-TCAGTGTAAGACCATGTCTGAGACATGGCA
64 TCTGGGACATGGCATCGGCATTG--AGATGAGAGCT-AGTGTAAGACAATGTCTGAGACATGGCA
* * *
47264936 TCGACTTTGATG-TGTG-AGCC
126 TCGACCTCGA-GATATGAAGCC
*
47264956 AGTGTAAGACCATGTCCAGGACATGGCATC
1 AGTGTAAGACCATGTCTAGGACATGGCATC
47264986 GACTTTGATA
Statistics
Matches: 153, Mismatches: 16, Indels: 14
0.84 0.09 0.08
Matches are distributed among these distances:
144 9 0.06
145 13 0.08
146 3 0.02
147 2 0.01
148 78 0.51
149 4 0.03
150 43 0.28
151 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (146 bp):
AGTGTAAGACCATGTCTAGGACATGGCATCAAACCACATGATGAGAGCCAATGTAAGACCATGTC
TGGGACATGGCATCGGCATTGAGATGAGAGCTAGTGTAAGACAATGTCTGAGACATGGCATCGAC
CTCGAGATATGAAGCC
Found at i:47267199 original size:42 final size:42
Alignment explanation
Indices: 47267142--47267306 Score: 138
Period size: 42 Copynumber: 3.9 Consensus size: 42
47267132 ACATTAGGGT
* *
47267142 TATGAG-TTTACGTGTAAGACCATATCTGGGATATGTCATCGT
1 TATGAGATTT-CGTGTAAGACCATATCTGGGATATGGCATCGA
* * *
47267184 TATGAGATTTCGTGT-AGTACCATGTTTGGGACATGGCATCGA
1 TATGAGATTTCGTGTAAG-ACCATATCTGGGATATGGCATCGA
** * * * * *
47267226 TATGA-AAATCGTGTAAGACCATAGCTAGGCTATTGGCGTCAA
1 TATGAGATTTCGTGTAAGACCATATCTGGGATA-TGGCATCGA
** * *
47267268 TATGAGATCCCATGTAAGACCATATCAGGGATATGGCAT
1 TATGAGATTTCGTGTAAGACCATATCTGGGATATGGCAT
47267307 TGGTATGATT
Statistics
Matches: 94, Mismatches: 24, Indels: 10
0.73 0.19 0.08
Matches are distributed among these distances:
41 18 0.19
42 54 0.57
43 22 0.23
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (42 bp):
TATGAGATTTCGTGTAAGACCATATCTGGGATATGGCATCGA
Found at i:47267603 original size:25 final size:25
Alignment explanation
Indices: 47267570--47267620 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
47267560 TTGTATGTTT
47267570 AAAGTTGATTATTATTTACATGCTA
1 AAAGTTGATTATTATTTACATGCTA
47267595 AAAGTTGATTATTATTTACATGCTA
1 AAAGTTGATTATTATTTACATGCTA
47267620 A
1 A
47267621 CTTACTAAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.37, C:0.08, G:0.12, T:0.43
Consensus pattern (25 bp):
AAAGTTGATTATTATTTACATGCTA
Found at i:47274377 original size:46 final size:46
Alignment explanation
Indices: 47274325--47274443 Score: 159
Period size: 46 Copynumber: 2.6 Consensus size: 46
47274315 TATGTGTGCT
* * *
47274325 AGTGTAAGACATGTCTGGGACATGCATTGGC-CACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATTGGCTCACA-GACGAAAGCC
*** *
47274371 AGTGTAAGACATGTCTGGGACATGCATTGGCTTTGAGACGAAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATTGGCTCACAGACGAAAGCC
47274417 AGTGTAAGACATGTCTGGGACATGCAT
1 AGTGTAAGACATGTCTGGGACATGCAT
47274444 CAGCCTCGAG
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
46 64 0.98
47 1 0.02
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATTGGCTCACAGACGAAAGCC
Found at i:47274562 original size:93 final size:96
Alignment explanation
Indices: 47274413--47274637 Score: 275
Period size: 93 Copynumber: 2.4 Consensus size: 96
47274403 TTGAGACGAA
* *
47274413 AGCTAGTGTAAGACATGTCTGGGACAT-GCATCAGCCTCGAGATATACAAGTTAGTGTAAGACCT
1 AGCTAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGAGATATACAAGTTAGTGTAAGACCT
* *
47274477 GTCTAGG-ACATGGCGTC-AGC-TTGTTGTG-T
66 GTCT-GGTACATGGCATCGA-CTTTGATGTGCT
* * * *
47274506 -GTTAGTATAAGACCTGTCTGGGACATGGCATCGGCCTCGATATATGA-AAGTTAGTGTAAGACT
1 AGCTAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGAGATAT-ACAAGTTAGTGTAAGACC
47274569 TGTCTGGTACATGGCATCGACTTTGATGTGCT
65 TGTCTGGTACATGGCATCGACTTTGATGTGCT
* *
47274601 AGCCAGTGTAAGACCATGTCTGGGACATGGCGTCGGC
1 AGCTAGTGTAAGACC-TGTCTGGGACATGGCATCGGC
47274638 ATCTTATCCC
Statistics
Matches: 112, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
92 25 0.22
93 46 0.41
94 9 0.08
95 1 0.01
96 11 0.10
97 20 0.18
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (96 bp):
AGCTAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGAGATATACAAGTTAGTGTAAGACCT
GTCTGGTACATGGCATCGACTTTGATGTGCT
Found at i:47276584 original size:4 final size:4
Alignment explanation
Indices: 47276575--47276632 Score: 66
Period size: 4 Copynumber: 14.5 Consensus size: 4
47276565 AGAGAGGGAG
* *
47276575 AAGA AAGA AAGA AAGAA AAGAA AATA AAGA AAGA AA-A GAGA AA-A AAGA
1 AAGA AAGA AAGA AAG-A AAG-A AAGA AAGA AAGA AAGA AAGA AAGA AAGA
47276623 AAGA AAGA AA
1 AAGA AAGA AA
47276633 ATGTATTTTT
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
3 5 0.11
4 34 0.72
5 8 0.17
ACGTcount: A:0.78, C:0.00, G:0.21, T:0.02
Consensus pattern (4 bp):
AAGA
Found at i:47276586 original size:22 final size:21
Alignment explanation
Indices: 47276561--47276632 Score: 72
Period size: 22 Copynumber: 3.3 Consensus size: 21
47276551 GAACATAAGG
* *
47276561 AAGAAGAGAGGGAGAAGAAAGA
1 AAGAA-AGAGAGAAAAGAAAGA
* *
47276583 AAGAAAGAAAAGAAAATAAAGA
1 AAGAAAG-AGAGAAAAGAAAGA
*
47276605 AAGAAAAGAGAAAAAAGAAAGA
1 AAG-AAAGAGAGAAAAGAAAGA
47276627 AAGAAA
1 AAGAAA
47276633 ATGTATTTTT
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
21 5 0.12
22 32 0.78
23 4 0.10
ACGTcount: A:0.72, C:0.00, G:0.26, T:0.01
Consensus pattern (21 bp):
AAGAAAGAGAGAAAAGAAAGA
Found at i:47276605 original size:18 final size:18
Alignment explanation
Indices: 47276582--47276634 Score: 83
Period size: 18 Copynumber: 3.0 Consensus size: 18
47276572 GAGAAGAAAG
47276582 AAAGAAAGAAAAGAAAAT
1 AAAGAAAGAAAAGAAAAT
47276600 AAAGAAAGAAAAGAGAAA-
1 AAAGAAAGAAAAGA-AAAT
47276618 AAAGAAAG-AAAGAAAAT
1 AAAGAAAGAAAAGAAAAT
47276635 GTATTTTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
16 3 0.09
17 5 0.15
18 22 0.67
19 3 0.09
ACGTcount: A:0.77, C:0.00, G:0.19, T:0.04
Consensus pattern (18 bp):
AAAGAAAGAAAAGAAAAT
Found at i:47276633 original size:22 final size:23
Alignment explanation
Indices: 47276575--47276633 Score: 86
Period size: 22 Copynumber: 2.7 Consensus size: 23
47276565 AGAGAGGGAG
47276575 AAGAAAGAAAG-AAAGAAAAGAA
1 AAGAAAGAAAGAAAAGAAAAGAA
* *
47276597 AATAAAGAAAGAAAAGAGAA-AA
1 AAGAAAGAAAGAAAAGAAAAGAA
47276619 AAGAAAGAAAGAAAA
1 AAGAAAGAAAGAAAA
47276634 TGTATTTTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
22 26 0.79
23 7 0.21
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (23 bp):
AAGAAAGAAAGAAAAGAAAAGAA
Found at i:47280404 original size:62 final size:62
Alignment explanation
Indices: 47280303--47280427 Score: 223
Period size: 62 Copynumber: 2.0 Consensus size: 62
47280293 TAATGTACCT
* *
47280303 AATTTATATTACAAAGTTTGTTCCAAGTTTTAATGTTGTAATGTATTTAATTTGTATTACAA
1 AATTTATATTACAAAGTTTGTTCCAAGTTTTAATATTGTAATGTATTTAATTTATATTACAA
*
47280365 AATTTATATTACAAAGTTTGTTCTAAGTTTTAATATTGTAATGTATTTAATTTATATTACAA
1 AATTTATATTACAAAGTTTGTTCCAAGTTTTAATATTGTAATGTATTTAATTTATATTACAA
47280427 A
1 A
47280428 GTTTGTTCCA
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 60 1.00
ACGTcount: A:0.36, C:0.06, G:0.10, T:0.49
Consensus pattern (62 bp):
AATTTATATTACAAAGTTTGTTCCAAGTTTTAATATTGTAATGTATTTAATTTATATTACAA
Found at i:47280424 original size:48 final size:48
Alignment explanation
Indices: 47280365--47280456 Score: 166
Period size: 48 Copynumber: 1.9 Consensus size: 48
47280355 TGTATTACAA
*
47280365 AATTTATATTACAAAGTTTGTTCTAAGTTTTAATATTGTAATGTATTT
1 AATTTATATTACAAAGTTTGTTCCAAGTTTTAATATTGTAATGTATTT
*
47280413 AATTTATATTACAAAGTTTGTTCCAAGTTTTAATGTTGTAATGT
1 AATTTATATTACAAAGTTTGTTCCAAGTTTTAATATTGTAATGT
47280457 TGTAATGTTG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.33, C:0.05, G:0.12, T:0.50
Consensus pattern (48 bp):
AATTTATATTACAAAGTTTGTTCCAAGTTTTAATATTGTAATGTATTT
Found at i:47283879 original size:31 final size:32
Alignment explanation
Indices: 47283813--47283879 Score: 75
Period size: 31 Copynumber: 2.1 Consensus size: 32
47283803 TGTGGAATCA
* *
47283813 GCATGACCAACAGTGTGCCGCCTCTAGAGTGG
1 GCATGACCAACAGTGTGCCGCCTCTAGACTAG
* *
47283845 GCATGACCAACCG-GTGCCGCCTGT-GAACTAG
1 GCATGACCAACAGTGTGCCGCCTCTAG-ACTAG
47283876 GCAT
1 GCAT
47283880 TTTCAATGCT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
30 1 0.03
31 17 0.57
32 12 0.40
ACGTcount: A:0.22, C:0.30, G:0.30, T:0.18
Consensus pattern (32 bp):
GCATGACCAACAGTGTGCCGCCTCTAGACTAG
Found at i:47292741 original size:39 final size:39
Alignment explanation
Indices: 47292630--47292759 Score: 170
Period size: 40 Copynumber: 3.3 Consensus size: 39
47292620 GGACTAAGAT
* * *
47292630 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGG-CATTGTGCGAGTTACTAAATCCGGGTTATGTC
**
47292670 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATT-GTGCGAGTTACTAAATCCGGGTTATGTC
* * *
47292710 CCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
47292749 CCGAAGGCATT
1 CCGAAGGCATT
47292760 TGAACGAGGA
Statistics
Matches: 79, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
39 37 0.47
40 42 0.53
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
Found at i:47292779 original size:79 final size:79
Alignment explanation
Indices: 47292630--47292794 Score: 179
Period size: 79 Copynumber: 2.1 Consensus size: 79
47292620 GGACTAAGAT
* * * ** ** *
47292630 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
**
47292695 AATCCGGGTTATGTC
66 AATCC-GGTTAAATC
* * * *
47292710 CCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
*
47292774 TATCCGGTTAAATC
66 AATCCGGTTAAATC
47292788 CCGAAGG
1 CCGAAGG
47292795 TACGTGATTT
Statistics
Matches: 70, Mismatches: 15, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
78 14 0.20
79 49 0.70
80 7 0.10
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGTTAAATC
Found at i:47300591 original size:39 final size:39
Alignment explanation
Indices: 47300480--47300609 Score: 170
Period size: 40 Copynumber: 3.3 Consensus size: 39
47300470 GGACTAAGAT
* * *
47300480 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGG-CATTGTGCGAGTTACTAAATCCGGGTTATGTC
**
47300520 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATT-GTGCGAGTTACTAAATCCGGGTTATGTC
* * *
47300560 CCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
47300599 CCGAAGGCATT
1 CCGAAGGCATT
47300610 TGAACGAGGA
Statistics
Matches: 79, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
39 37 0.47
40 42 0.53
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
Found at i:47300629 original size:79 final size:79
Alignment explanation
Indices: 47300480--47300644 Score: 179
Period size: 79 Copynumber: 2.1 Consensus size: 79
47300470 GGACTAAGAT
* * * ** ** *
47300480 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
**
47300545 AATCCGGGTTATGTC
66 AATCC-GGTTAAATC
* * * *
47300560 CCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
*
47300624 TATCCGGTTAAATC
66 AATCCGGTTAAATC
47300638 CCGAAGG
1 CCGAAGG
47300645 TACGTGATTT
Statistics
Matches: 70, Mismatches: 15, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
78 14 0.20
79 49 0.70
80 7 0.10
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGTTAAATC
Found at i:47311664 original size:40 final size:40
Alignment explanation
Indices: 47311609--47311766 Score: 280
Period size: 40 Copynumber: 4.0 Consensus size: 40
47311599 TGAAAAAAAA
*
47311609 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
47311649 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
47311689 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* * *
47311729 TATAACCGGGTTAAGTCTCGAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTT
47311767 GTTACATCCG
Statistics
Matches: 114, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 114 1.00
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
Found at i:47311790 original size:80 final size:80
Alignment explanation
Indices: 47311624--47311792 Score: 230
Period size: 80 Copynumber: 2.1 Consensus size: 80
47311614 CCGGGTTAAG
47311624 TCCCGAAGGCATTCGTGCGGGTTACTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TCCCGAAGGCATTCGTGCGGGTTACTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* * ** *
47311689 TATAACCGGGTTAAG
66 TACAACCGAGCCAAA
* * * * *
47311704 TCCCGAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCTCGAAGGCATTTGTGCTGGTTGT
1 TCCCGAAGGCATTCGTGCGGGTTACTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
*
47311769 TACATCCGAGCCAAA
66 TACAACCGAGCCAAA
*
47311784 TTCCGAAGG
1 TCCCGAAGG
47311793 TATTTATGTT
Statistics
Matches: 77, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
80 77 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.27
Consensus pattern (80 bp):
TCCCGAAGGCATTCGTGCGGGTTACTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
TACAACCGAGCCAAA
Found at i:47313639 original size:19 final size:20
Alignment explanation
Indices: 47313617--47313654 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
47313607 CTGTTTTGTT
47313617 ATGGG-CCAACTGTATTAAA
1 ATGGGCCCAACTGTATTAAA
*
47313636 ATGGGCCCAACTGTGTTAA
1 ATGGGCCCAACTGTATTAA
47313655 TATAGGAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTAAA
Found at i:47319345 original size:39 final size:39
Alignment explanation
Indices: 47319302--47319387 Score: 102
Period size: 39 Copynumber: 2.2 Consensus size: 39
47319292 ACTTAATGTG
* *
47319302 TAGCAGGCCTCGTGTCAGTGATAAATTTAG-GTTTATACC
1 TAGCAGGCCTCGTGCCAGTG-TAAAGTTAGAGTTTATACC
* * * *
47319341 TAGCAGGCCTTGTGCCGGTGTTAAGTTCGAGTTTATACC
1 TAGCAGGCCTCGTGCCAGTGTAAAGTTAGAGTTTATACC
47319380 TAGCAGGC
1 TAGCAGGC
47319388 AAATTGCCGG
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
38 6 0.15
39 34 0.85
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (39 bp):
TAGCAGGCCTCGTGCCAGTGTAAAGTTAGAGTTTATACC
Found at i:47329592 original size:3 final size:3
Alignment explanation
Indices: 47329586--47329613 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
47329576 ATAGATGATG
47329586 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
47329614 GAAAAAGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:47331274 original size:97 final size:96
Alignment explanation
Indices: 47331165--47331341 Score: 230
Period size: 97 Copynumber: 1.8 Consensus size: 96
47331155 GATCTGATTT
* * * * * * *
47331165 GTAATTTCTAGCTTTAATTTGTTCCACTGCAACTTTAGGGAAATGAGATTTGCTATCTTCAATCT
1 GTAATTTCTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAAATAAGATCTGCTATATTCAATCT
47331230 GCTCCTACTGCAACTTAAGGGAGATAAGACTC
66 GCTCC-ACTGCAACTTAAGGGAGATAAGACTC
* * *
47331262 GTAACTTT-TAGCTTCAATCTGCTCTACTGCAACTTCAGGGAAATAAGATCTGCTATATTTAGTC
1 GTAA-TTTCTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAAATAAGATCTGCTATATTCAATC
*
47331326 TGCTCCGCTGCAACTT
65 TGCTCCACTGCAACTT
47331342 TAGAATGATA
Statistics
Matches: 68, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
96 9 0.13
97 56 0.82
98 3 0.04
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (96 bp):
GTAATTTCTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAAATAAGATCTGCTATATTCAATCT
GCTCCACTGCAACTTAAGGGAGATAAGACTC
Found at i:47331448 original size:143 final size:141
Alignment explanation
Indices: 47331221--47331969 Score: 740
Period size: 143 Copynumber: 5.3 Consensus size: 141
47331211 GATTTGCTAT
* * * *
47331221 CTTCAATCTGCTCCTACTGCAACTTAAGGGAGATAAGA-CT--CGTAACTTT-TAGCTTCAATCT
1 CTTCAATCTGCTCC-ACTGCAACTTTAGGAAGATAAGATCTGCCATAA-TTTGTAGCTTTAATCT
* * * * * * * *
47331282 GCTCTACTGCAACTTCAGGGAAATAAGATCTGCTATATTTAGTCTGCTCCGCTGCAACTTTAGAA
64 GTTCCACTGCAACTTCAAGGAAATAAGAT-TGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGA
*
47331347 TGATAAGGCTGATGG
128 -GATAAGGCTGGTGG
* * * *
47331362 CTTCAGTCTGCTCCACTGCAACTTTAGGAAGATAAGATCTGCCACAATTTGTAACTTTAATCTAT
1 CTTCAATCTGCTCCACTGCAACTTTAGGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCTGT
*
47331427 TCCACTGCAACGTCAAGGAAATAAGATTTGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAG
66 TCCACTGCAACTTCAAGGAAATAAGA-TTGCTGTCTTCAGTCTGCTCCGCTGCAACTTCA-GGAG
*
47331492 ATAAGGCTAGTGG
129 ATAAGGCTGGTGG
* * * * * *
47331505 CTTCAATCTGCTCCACTACAACTTGAGGAAGATAATATTTGCTATAATTTGTAGCTTCAATCTGT
1 CTTCAATCTGCTCCACTGCAACTTTAGGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCTGT
* * * ** ** *
47331570 TCCATTGCAACTTTAAGGAAATAAAATTCGCTGTCTTCAGTCTGCTCTTCTATAACTTTAGGGAG
66 TCCACTGCAACTTCAAGGAAATAAGATT-GCTGTCTTCAGTCTGCTCCGCTGCAACTTCA-GGAG
*
47331635 ACAAGGCTGGTGG
129 ATAAGGCTGGTGG
* * * * * * ** * *
47331648 ATTCAATGTGCTTCACTACAACTTCAGGGAGATAAGAT-TCGCCATGGTTTGCAGCTTGAATCTG
1 CTTCAATCTGCTCCACTGCAACTTTAGGAAGATAAGATCT-GCCATAATTTGTAGCTTTAATCTG
* * * * *
47331712 TTCCAGTGCAATTTTAGGGAAATAAGATTCGCTGTCTTTAGTCTGCTCCGCTGCAACTTCAAGGA
65 TTCCACTGCAACTTCAAGGAAATAAGATT-GCTGTCTTCAGTCTGCTCCGCTGCAACTTC-AGGA
47331777 GATAAGGCTGGTGG
128 GATAAGGCTGGTGG
* * * * * *
47331791 CTTCAATTTGCTCCACTGCAAGTTAAGGAAGATAACATCTACTATAATTTGTAGCTTTAATCTGT
1 CTTCAATCTGCTCCACTGCAACTTTAGGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCTGT
* * * * * * * *
47331856 TCCACTGCAACGTCAGGGAAA-ATA-TTTTCTGTATTCAGTCAGCTCCACTACAACTTCAGAGAG
66 TCCACTGCAACTTCAAGGAAATA-AGATTGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAG-GAG
47331919 ATAAGGCTGGTGG
129 ATAAGGCTGGTGG
*
47331932 CTTCAATCTGTTCCACTGCAACTTTA-GAGAGATAAGAT
1 CTTCAATCTGCTCCACTGCAACTTTAGGA-AGATAAGAT
47331970 TCGCCATGGT
Statistics
Matches: 503, Mismatches: 92, Indels: 26
0.81 0.15 0.04
Matches are distributed among these distances:
140 25 0.05
141 85 0.17
142 9 0.02
143 379 0.75
144 5 0.01
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (141 bp):
CTTCAATCTGCTCCACTGCAACTTTAGGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCTGT
TCCACTGCAACTTCAAGGAAATAAGATTGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGAGAT
AAGGCTGGTGG
Found at i:47331629 original size:286 final size:285
Alignment explanation
Indices: 47331221--47331975 Score: 833
Period size: 286 Copynumber: 2.7 Consensus size: 285
47331211 GATTTGCTAT
* * * * *
47331221 CTTCAATCTGCTCCTACTGCAACTTAAGGGAGATAAGACTCG-TA-ACTTT-TAGCTTCAATCTG
1 CTTCAATCTGCTCC-ACTGCAACTTAAGGAAGATAACATTTGCTATAATTTGTAGCTTCAATCTG
* * * * * * * * *
47331283 CTCTACTGCAACTTCAGGGAAATAAGA-TCTGCTATATTTAGTCTGCTCCGCTGCAACTTTAGAA
65 TTCCACTGCAACTTTAAGGAAATAAAATTC-GCTGTATTCAGTCTGCTCCACTACAACTTTAGAA
* *
47331347 TGATAAGGCTGATGGCTTCAGTCTGCTCCACTGCAACTTTAGGAAGATAAGA-TCTGCCACAATT
129 -GATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTTAGGAAGATAAGATTC-GCCACAATT
* * *
47331411 TGTAACTTTAATCTATTCCACTGCAACGTCAAGGAAATAAGATTTGCTGTCTTCAGTCTGCTCCG
192 TGCAACTTGAATCTATTCCACTGCAACGTCAAGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCG
*
47331476 CTGCAACTTCAGGGAGATAAGGCTAGTGG
257 CTGCAACTTCAAGGAGATAAGGCTAGTGG
* * *
47331505 CTTCAATCTGCTCCACTACAACTTGAGGAAGATAATATTTGCTATAATTTGTAGCTTCAATCTGT
1 CTTCAATCTGCTCCACTGCAACTTAAGGAAGATAACATTTGCTATAATTTGTAGCTTCAATCTGT
* * ** * *
47331570 TCCATTGCAACTTTAAGGAAATAAAATTCGCTGTCTTCAGTCTGCTCTTCTATAACTTTAGGGAG
66 TCCACTGCAACTTTAAGGAAATAAAATTCGCTGTATTCAGTCTGCTCCACTACAACTTTA-GAAG
* * * * * * * ***
47331635 ACAAGGCTGGTGGATTCAATGTGCTTCACTACAACTTCAGGGAGATAAGATTCGCCATGGTTTGC
130 ATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTTAGGAAGATAAGATTCGCCACAATTTGC
* * * ** * * *
47331700 AGCTTGAATCTGTTCCAGTGCAATTTTAGGGAAATAAGATTCGCTGTCTTTAGTCTGCTCCGCTG
195 AACTTGAATCTATTCCACTGCAACGTCAAGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTG
*
47331765 CAACTTCAAGGAGATAAGGCTGGTGG
260 CAACTTCAAGGAGATAAGGCTAGTGG
* * * * *
47331791 CTTCAATTTGCTCCACTGCAAGTTAAGGAAGATAACATCTACTATAATTTGTAGCTTTAATCTGT
1 CTTCAATCTGCTCCACTGCAACTTAAGGAAGATAACATTTGCTATAATTTGTAGCTTCAATCTGT
* * * * ** * *
47331856 TCCACTGCAAC-GTCAGGGAA-AATATTTTCTGTATTCAGTCAGCTCCACTACAACTTCAGAGAG
66 TCCACTGCAACTTTAAGGAAATAAAATTCGCTGTATTCAGTCTGCTCCACTACAACTTTAGA-AG
*
47331919 ATAAGGCTGGTGGCTTCAATCTGTTCCACTGCAACTTTA-GAGAGATAAGATTCGCCA
130 ATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTTAGGA-AGATAAGATTCGCCA
47331976 TGGTATATTT
Statistics
Matches: 387, Mismatches: 76, Indels: 16
0.81 0.16 0.03
Matches are distributed among these distances:
283 23 0.06
284 94 0.24
285 10 0.03
286 254 0.66
287 6 0.02
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (285 bp):
CTTCAATCTGCTCCACTGCAACTTAAGGAAGATAACATTTGCTATAATTTGTAGCTTCAATCTGT
TCCACTGCAACTTTAAGGAAATAAAATTCGCTGTATTCAGTCTGCTCCACTACAACTTTAGAAGA
TAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTTAGGAAGATAAGATTCGCCACAATTTGCA
ACTTGAATCTATTCCACTGCAACGTCAAGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGC
AACTTCAAGGAGATAAGGCTAGTGG
Found at i:47339661 original size:3 final size:3
Alignment explanation
Indices: 47339648--47339706 Score: 109
Period size: 3 Copynumber: 19.3 Consensus size: 3
47339638 AAAATGCATC
47339648 AAT AGAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
47339694 AAT AAT AAT AAT A
1 AAT AAT AAT AAT A
47339707 GTAAGAAAAA
Statistics
Matches: 55, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 52 0.95
4 3 0.05
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:47343673 original size:39 final size:40
Alignment explanation
Indices: 47343578--47343839 Score: 319
Period size: 39 Copynumber: 6.7 Consensus size: 40
47343568 TTGAATGATG
*
47343578 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
47343616 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
*
47343657 TCCGGGCTAAG-CCCGAAGGCATTCGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
47343696 TGCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
47343735 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
47343774 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
47343813 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
47343840 AACGAGGAGC
Statistics
Matches: 199, Mismatches: 15, Indels: 17
0.86 0.06 0.07
Matches are distributed among these distances:
39 128 0.64
40 59 0.30
41 11 0.06
42 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:47343861 original size:79 final size:79
Alignment explanation
Indices: 47343630--47343872 Score: 264
Period size: 78 Copynumber: 3.1 Consensus size: 79
47343620 GGACTAAGAT
* * **
47343630 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTCGTGCGAGAT-ACTA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAG-TGACTA
* * *
47343694 ATTGCGGGCTAAG-C
65 AATCCGGGTTAAGTC
* ** *
47343708 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
47343773 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
*
47343787 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
* * *
47343849 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAGTC
47343866 CCGAAGG
1 CCGAAGG
47343873 TACGTGATTT
Statistics
Matches: 147, Mismatches: 12, Indels: 11
0.86 0.07 0.06
Matches are distributed among these distances:
77 1 0.01
78 74 0.50
79 47 0.32
80 25 0.17
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAGTC
Found at i:47351631 original size:39 final size:39
Alignment explanation
Indices: 47351535--47351796 Score: 302
Period size: 39 Copynumber: 6.6 Consensus size: 39
47351525 TTGAATGATG
*
47351535 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
47351573 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
* *
47351614 TCCGGGCTAAGCTCGAAGGCATTCGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
*
47351653 TGCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* *
47351692 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
*
47351731 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
47351770 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAG-CCCGAAGGCATTTG
47351797 AACGAGGAGC
Statistics
Matches: 196, Mismatches: 20, Indels: 13
0.86 0.09 0.06
Matches are distributed among these distances:
39 126 0.64
40 58 0.30
41 11 0.06
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:47351818 original size:79 final size:79
Alignment explanation
Indices: 47351587--47351829 Score: 255
Period size: 78 Copynumber: 3.1 Consensus size: 79
47351577 GGACTAAGAT
* * * **
47351587 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCTCGAAGGCATTCGTGCGAGAT-ACTA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAG-TGACTA
* * *
47351651 ATTGCGGGCTAAG-C
65 AATCCGGGTTAAGTC
* ** *
47351665 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
47351730 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
*
47351744 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
* * *
47351806 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAGTC
47351823 CCGAAGG
1 CCGAAGG
47351830 TACGTGATTT
Statistics
Matches: 146, Mismatches: 13, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
77 1 0.01
78 73 0.50
79 47 0.32
80 25 0.17
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAGTC
Found at i:47369211 original size:14 final size:15
Alignment explanation
Indices: 47369189--47369218 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
47369179 GAATATTAAA
47369189 ACAAGAATTAAGAAC
1 ACAAGAATTAAGAAC
47369204 ACAA-AATTAAGAAC
1 ACAAGAATTAAGAAC
47369218 A
1 A
47369219 AGTCAAATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.63, C:0.13, G:0.10, T:0.13
Consensus pattern (15 bp):
ACAAGAATTAAGAAC
Found at i:47375902 original size:43 final size:42
Alignment explanation
Indices: 47375837--47375920 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 42
47375827 CATAAGCTCG
47375837 TACAATGCCATATCCCAGACATGGTCTTACACGTAATCACAA
1 TACAATGCCATATCCCAGACATGGTCTTACACGTAATCACAA
* * *
47375879 TACAATGCCAATGTCCCATACATGGTCTTACATGTAATCACA
1 TACAATGCC-ATATCCCAGACATGGTCTTACACGTAATCACA
47375921 TCTTGGTAAC
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
42 9 0.24
43 29 0.76
ACGTcount: A:0.35, C:0.27, G:0.12, T:0.26
Consensus pattern (42 bp):
TACAATGCCATATCCCAGACATGGTCTTACACGTAATCACAA
Found at i:47376109 original size:35 final size:35
Alignment explanation
Indices: 47376043--47376109 Score: 98
Period size: 35 Copynumber: 1.9 Consensus size: 35
47376033 TTCATAACAG
* *
47376043 TTTAATAACAAATAAACGTTTATAATTCAATTCAA
1 TTTAATAACAAATAAACATTTATAATACAATTCAA
* *
47376078 TTTAATAATAAATAAGCATTTATAATACAATT
1 TTTAATAACAAATAAACATTTATAATACAATT
47376110 TAAATACGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 28 1.00
ACGTcount: A:0.49, C:0.09, G:0.03, T:0.39
Consensus pattern (35 bp):
TTTAATAACAAATAAACATTTATAATACAATTCAA
Found at i:47387780 original size:46 final size:46
Alignment explanation
Indices: 47387728--47387852 Score: 157
Period size: 46 Copynumber: 2.7 Consensus size: 46
47387718 TGAGACGAGT
* *
47387728 GCTAGTGTAAGACATGTCTAGGACATGCTTCAGCCT-CAAGACG-TAA
1 GCTAGTGTAAGACATGTCTAGGACATGCATCAG-CTACAAGAGGAT-A
47387774 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCTACAAGAGGATA
1 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCTACAAGAGGATA
*
47387820 G-TCAGTGTAAGACCATGTCTGGGACATGGCATC
1 GCT-AGTGTAAGA-CATGTCTAGGACAT-GCATC
47387853 GACTTGAGAT
Statistics
Matches: 71, Mismatches: 3, Indels: 8
0.87 0.04 0.10
Matches are distributed among these distances:
45 3 0.04
46 49 0.69
47 14 0.20
48 5 0.07
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTAGGACATGCATCAGCTACAAGAGGATA
Found at i:47388865 original size:40 final size:42
Alignment explanation
Indices: 47388821--47388900 Score: 110
Period size: 41 Copynumber: 2.0 Consensus size: 42
47388811 AGGTTTTTGC
* *
47388821 ACACGGGCTA-GGACACGGGCATGTCAT-GGCCGTGTGAAGG
1 ACACGGGCCAGGGACACGAGCATGTCATAGGCCGTGTGAAGG
**
47388861 ACACGGGCCAGGGACACGAGCATGTGTTAGGCCGTGTGAA
1 ACACGGGCCAGGGACACGAGCATGTCATAGGCCGTGTGAA
47388901 AACCCTTGTA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 9 0.26
41 14 0.41
42 11 0.32
ACGTcount: A:0.24, C:0.23, G:0.39, T:0.15
Consensus pattern (42 bp):
ACACGGGCCAGGGACACGAGCATGTCATAGGCCGTGTGAAGG
Found at i:47394128 original size:103 final size:103
Alignment explanation
Indices: 47394006--47394207 Score: 377
Period size: 103 Copynumber: 2.0 Consensus size: 103
47393996 ACGTGACTTA
47394006 TATGGGTGAGGGCTTGTAAGCCTATTTAACCAAGCTATGTATTGATGCCTGGCGATGTGGTCAGG
1 TATGGGTGAGGGCTTGTAAGCCTATTTAACCAAGCTATGTATTGATGCCTGGCGATGTGGTCAGG
47394071 TGATTATATTTGTTTGATATGAATGGTTAGTGTTGCGG
66 TGATTATATTTGTTTGATATGAATGGTTAGTGTTGCGG
* * *
47394109 TATGGGTGAGGGCTTGTAAGCCTATTTAACCAAGCTATGTATTGATTCTTGGCGATGTGGTCATG
1 TATGGGTGAGGGCTTGTAAGCCTATTTAACCAAGCTATGTATTGATGCCTGGCGATGTGGTCAGG
47394174 TGATTATATTTGTTTGATATGAATGGTTAGTGTT
66 TGATTATATTTGTTTGATATGAATGGTTAGTGTT
47394208 ATGGTATGTA
Statistics
Matches: 96, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 96 1.00
ACGTcount: A:0.22, C:0.10, G:0.29, T:0.39
Consensus pattern (103 bp):
TATGGGTGAGGGCTTGTAAGCCTATTTAACCAAGCTATGTATTGATGCCTGGCGATGTGGTCAGG
TGATTATATTTGTTTGATATGAATGGTTAGTGTTGCGG
Found at i:47395937 original size:3 final size:3
Alignment explanation
Indices: 47395929--47395962 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
47395919 GGATGATTTA
* *
47395929 ATT ATT ATT ATT ATC ATT ATT ATT ATT ATA ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
47395963 AGTATGTTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (3 bp):
ATT
Found at i:47398075 original size:27 final size:26
Alignment explanation
Indices: 47398003--47398118 Score: 117
Period size: 27 Copynumber: 4.3 Consensus size: 26
47397993 ATGGGGGAAG
*
47398003 TGTTCTGGTGGCTATGCTACCAATATCT
1 TGTTCTGGTGGCTATGCCA-CAATAT-T
*
47398031 AT-TTCTAGTGGCTATGCCACAAATATT
1 -TGTTCTGGTGGCTATGCCAC-AATATT
* *
47398058 TGTTCTGGTGGCTCTGCCACAATATC
1 TGTTCTGGTGGCTATGCCACAATATT
* * *
47398084 TGTATCTGGTGACTCTGTCACAATATT
1 TGT-TCTGGTGGCTATGCCACAATATT
47398111 TGTTCTGG
1 TGTTCTGG
47398119 CAGCCCTGCT
Statistics
Matches: 76, Mismatches: 8, Indels: 9
0.82 0.09 0.10
Matches are distributed among these distances:
26 14 0.18
27 41 0.54
28 20 0.26
29 1 0.01
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.39
Consensus pattern (26 bp):
TGTTCTGGTGGCTATGCCACAATATT
Found at i:47398106 original size:54 final size:54
Alignment explanation
Indices: 47398003--47398118 Score: 144
Period size: 54 Copynumber: 2.1 Consensus size: 54
47397993 ATGGGGGAAG
* * *
47398003 TGTTCTGGTGGCTATGCTACCAATATCTATTTCTAGTGGCTATGCCACAAATATT
1 TGTTCTGGTGGCTATGCCACCAATATCTATATCTAGTGACTATGCCAC-AATATT
* * * * *
47398058 TGTTCTGGTGGCTCTGCCA-CAATATCTGTATCTGGTGACTCTGTCACAATATT
1 TGTTCTGGTGGCTATGCCACCAATATCTATATCTAGTGACTATGCCACAATATT
47398111 TGTTCTGG
1 TGTTCTGG
47398119 CAGCCCTGCT
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
53 14 0.26
54 22 0.42
55 17 0.32
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.39
Consensus pattern (54 bp):
TGTTCTGGTGGCTATGCCACCAATATCTATATCTAGTGACTATGCCACAATATT
Found at i:47401757 original size:76 final size:76
Alignment explanation
Indices: 47401631--47401782 Score: 304
Period size: 76 Copynumber: 2.0 Consensus size: 76
47401621 AATATCAGGT
47401631 TCAACTCTCTACGGTGACATATTAACAACAGTTTATCCCACATAAGCATCTAAGCTGGGGTTGGG
1 TCAACTCTCTACGGTGACATATTAACAACAGTTTATCCCACATAAGCATCTAAGCTGGGGTTGGG
47401696 TGCCTGCTTTC
66 TGCCTGCTTTC
47401707 TCAACTCTCTACGGTGACATATTAACAACAGTTTATCCCACATAAGCATCTAAGCTGGGGTTGGG
1 TCAACTCTCTACGGTGACATATTAACAACAGTTTATCCCACATAAGCATCTAAGCTGGGGTTGGG
47401772 TGCCTGCTTTC
66 TGCCTGCTTTC
47401783 AGAGCTTTCT
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 76 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (76 bp):
TCAACTCTCTACGGTGACATATTAACAACAGTTTATCCCACATAAGCATCTAAGCTGGGGTTGGG
TGCCTGCTTTC
Found at i:47407152 original size:28 final size:28
Alignment explanation
Indices: 47407115--47407229 Score: 121
Period size: 27 Copynumber: 4.2 Consensus size: 28
47407105 GGGGGAAGTG
*
47407115 TTCTGGTGGCTATGCTACAAATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
*
47407143 TTCTGCTGGCTATGCCACAAATATCTG-
1 TTCTGGTGGCTATGCCACAAATATCTGT
* *
47407170 TTCTGGTAGCTCTGCCAC-AATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
* * * * *
47407197 ATCTAGTGACTCTGTCAC-AATATCTG-
1 TTCTGGTGGCTATGCCACAAATATCTGT
47407223 TTCTGGT
1 TTCTGGT
47407230 AGCCCTGCTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
26 13 0.18
27 36 0.49
28 25 0.34
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.37
Consensus pattern (28 bp):
TTCTGGTGGCTATGCCACAAATATCTGT
Found at i:47407228 original size:53 final size:55
Alignment explanation
Indices: 47407113--47407237 Score: 148
Period size: 53 Copynumber: 2.3 Consensus size: 55
47407103 ATGGGGGAAG
* * * * *
47407113 TGTTCTGGTGGCTATGCTACAAATATCTGTTTCTGCTGGCTATGCCACAAATATC
1 TGTTCTGGTAGCTCTGCCACAAATATCTGTATCTGCTGACTATGCCACAAATATC
* *
47407168 TGTTCTGGTAGCTCTGCCAC-AATATCTGTATCTAG-TGACTCTGTCAC-AATATC
1 TGTTCTGGTAGCTCTGCCACAAATATCTGTATCT-GCTGACTATGCCACAAATATC
*
47407221 TGTTCTGGTAGCCCTGC
1 TGTTCTGGTAGCTCTGC
47407238 TGCAAATTCT
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
53 22 0.36
54 21 0.34
55 18 0.30
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.36
Consensus pattern (55 bp):
TGTTCTGGTAGCTCTGCCACAAATATCTGTATCTGCTGACTATGCCACAAATATC
Found at i:47423545 original size:46 final size:48
Alignment explanation
Indices: 47423441--47423560 Score: 154
Period size: 48 Copynumber: 2.5 Consensus size: 48
47423431 TGTCTTCGAC
** * *
47423441 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
* * *
47423489 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCCATATA-A-CTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
*
47423535 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
47423561 CTGTCCCGTC
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
46 27 0.43
47 1 0.02
48 35 0.56
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.35
Consensus pattern (48 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
Found at i:47434450 original size:31 final size:31
Alignment explanation
Indices: 47434407--47434485 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
47434397 TTTAACGGTT
47434407 ATTGGGCCGAAGCCTTTTCATAAATCATATC
1 ATTGGGCCGAAGCCTTTTCATAAATCATATC
* * *
47434438 ATTGGGCTGAAGCTTTTTCATAAATCATTTC
1 ATTGGGCCGAAGCCTTTTCATAAATCATATC
*
47434469 ACTGGGCCGAAGCCTTT
1 ATTGGGCCGAAGCCTTT
47434486 ACTGTAAACG
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (31 bp):
ATTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:47434554 original size:42 final size:42
Alignment explanation
Indices: 47434507--47434600 Score: 134
Period size: 42 Copynumber: 2.2 Consensus size: 42
47434497 TATGGCCCAT
* **
47434507 AAGCCCATTTCAATATCACATGTAATGTCAATGGATATATGC
1 AAGCCCATTTCAATATCACATGAAATACCAATGGATATATGC
* * *
47434549 AAGCCCTTTTCAATATCATATGAAATACCAATGGATGTATGC
1 AAGCCCATTTCAATATCACATGAAATACCAATGGATATATGC
47434591 AAGCCCATTT
1 AAGCCCATTT
47434601 GGGGATACTA
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.31
Consensus pattern (42 bp):
AAGCCCATTTCAATATCACATGAAATACCAATGGATATATGC
Found at i:47434817 original size:26 final size:26
Alignment explanation
Indices: 47434733--47434868 Score: 199
Period size: 26 Copynumber: 5.3 Consensus size: 26
47434723 CTGGAGGCCT
47434733 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
**
47434757 AGCCCTTTTCGGTAAACTGGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
47434782 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
**
47434808 AGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
47434834 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
47434860 AGCCCTTTT
1 AGCCCTTTT
47434869 GCACTTCCTC
Statistics
Matches: 101, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
23 5 0.05
24 5 0.05
25 33 0.33
26 58 0.57
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:47434857 original size:52 final size:51
Alignment explanation
Indices: 47434733--47434868 Score: 233
Period size: 52 Copynumber: 2.7 Consensus size: 51
47434723 CTGGAGGCCT
47434733 AGCCTCTTTT-AAT-AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCAA
1 AGCC-CTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAA
47434782 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCA-A
47434834 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
47434869 GCACTTCCTC
Statistics
Matches: 83, Mismatches: 0, Indels: 5
0.94 0.00 0.06
Matches are distributed among these distances:
48 5 0.06
49 7 0.08
50 10 0.12
51 25 0.30
52 36 0.43
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (51 bp):
AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAA
Found at i:47435733 original size:27 final size:27
Alignment explanation
Indices: 47435674--47435735 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
47435664 CATATTCATT
*
47435674 ATTTTACCATATAGGGGTATTACGGTC
1 ATTTTACCATACAGGGGTATTACGGTC
* *
47435701 ACTTTACCCTACAGGGGCT-TTACGGTC
1 ATTTTACCATACAGGGG-TATTACGGTC
*
47435728 TTTTTACC
1 ATTTTACC
47435736 TAATAGGCAT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
27 28 0.97
28 1 0.03
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.37
Consensus pattern (27 bp):
ATTTTACCATACAGGGGTATTACGGTC
Found at i:47435819 original size:27 final size:27
Alignment explanation
Indices: 47435767--47436068 Score: 200
Period size: 27 Copynumber: 11.1 Consensus size: 27
47435757 TTCATCCTAC
* * * *
47435767 AAGGGTGTTTTGGTAAATCTACAAACT
1 AAGGGTATTTCGGTAATTTTACAAACT
* **
47435794 AAGGGTATTTCAGTAATTTTGTAAACT
1 AAGGGTATTTCGGTAATTTTACAAACT
** ** * *
47435821 AATTGTATTTCTATAATTTTTAGAAAGT
1 AAGGGTATTTCGGTAA-TTTTACAAACT
** *
47435849 CAAGGGTATTTTTGTAACTTTGTA-AATC-
1 -AAGGGTATTTCGGTAA-TTT-TACAAACT
* * *
47435877 AGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTCGGTAATTTTACAAACT
* *
47435904 GAGGGTATTTCGGTAATTTCACAAAC-
1 AAGGGTATTTCGGTAATTTTACAAACT
* *
47435930 CAGTGGTATTTTGGTAATTTTACAAACT
1 AAG-GGTATTTCGGTAATTTTACAAACT
* * * *
47435958 AGGGGTATTTTGGTAATTTTACAAGTCG
1 AAGGGTATTTCGGTAATTTTACAA-ACT
*
47435986 AA-GGTATTTCAGTAATTTTACAAA-T
1 AAGGGTATTTCGGTAATTTTACAAACT
* * * *
47436011 CGAGAGTATTTCAGTATTTTTACAAACT
1 -AAGGGTATTTCGGTAATTTTACAAACT
*
47436039 AAGGGTATTTCGGTAATTTTAGTAAACT
1 AAGGGTATTTCGGTAATTTTA-CAAACT
47436067 AA
1 AA
47436069 AATATTCTAA
Statistics
Matches: 213, Mismatches: 50, Indels: 23
0.74 0.17 0.08
Matches are distributed among these distances:
25 2 0.01
26 8 0.04
27 165 0.77
28 19 0.09
29 17 0.08
30 2 0.01
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
AAGGGTATTTCGGTAATTTTACAAACT
Found at i:47435970 original size:81 final size:81
Alignment explanation
Indices: 47435877--47436059 Score: 242
Period size: 81 Copynumber: 2.3 Consensus size: 81
47435867 TTTGTAAATC
* * * *
47435877 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAA-CCAGTGGTATTT
1 AGGGGTATTTTGGTAATTTTACAAATCGAAGGTATTTCAGTAATTTCACAAATCCAG-AGTATTT
**
47435941 TGGTAATTTTACAAACT
65 CAGTAATTTTACAAACT
* * *
47435958 AGGGGTATTTTGGTAATTTTACAAGTCGAAGGTATTTCAGTAATTTTACAAATCGAGAGTATTTC
1 AGGGGTATTTTGGTAATTTTACAAATCGAAGGTATTTCAGTAATTTCACAAATCCAGAGTATTTC
*
47436023 AGTATTTTTACAAACT
66 AGTAATTTTACAAACT
* *
47436039 AAGGGTATTTCGGTAATTTTA
1 AGGGGTATTTTGGTAATTTTA
47436060 GTAAACTAAA
Statistics
Matches: 89, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
81 86 0.97
82 3 0.03
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAATCGAAGGTATTTCAGTAATTTCACAAATCCAGAGTATTTC
AGTAATTTTACAAACT
Found at i:47439405 original size:32 final size:32
Alignment explanation
Indices: 47439369--47439480 Score: 152
Period size: 32 Copynumber: 3.5 Consensus size: 32
47439359 TGGGCCAGGT
* *
47439369 CATGTGGGCCACACGGGCAAGGCCAATTTGGG
1 CATGTAGGCCACACGGGCAAGGCCAATCTGGG
* * *
47439401 CATGTAGGCCACAAGAGCAAGGGCAATCTGGG
1 CATGTAGGCCACACGGGCAAGGCCAATCTGGG
*
47439433 CATGTAGGCCACACGGGTAAGGCCAATCTGGG
1 CATGTAGGCCACACGGGCAAGGCCAATCTGGG
* *
47439465 CTTGCAGGCCACACGG
1 CATGTAGGCCACACGG
47439481 TCATGTGGGC
Statistics
Matches: 69, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 69 1.00
ACGTcount: A:0.25, C:0.26, G:0.35, T:0.14
Consensus pattern (32 bp):
CATGTAGGCCACACGGGCAAGGCCAATCTGGG
Found at i:47440269 original size:19 final size:20
Alignment explanation
Indices: 47440218--47440269 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 20
47440208 AAGGGCTATT
*
47440218 TTGTAAA-GTTGTAAAATAAG
1 TTGTAAATG-TGTGAAATAAG
47440238 TTGTAAATGTGTGAAATAA-
1 TTGTAAATGTGTGAAATAAG
47440257 TTG-AAATTGTGTG
1 TTGTAAA-TGTGTG
47440270 TTGCTATAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 3 0.10
19 9 0.31
20 16 0.55
21 1 0.03
ACGTcount: A:0.38, C:0.00, G:0.23, T:0.38
Consensus pattern (20 bp):
TTGTAAATGTGTGAAATAAG
Found at i:47441064 original size:97 final size:98
Alignment explanation
Indices: 47440950--47441184 Score: 255
Period size: 98 Copynumber: 2.4 Consensus size: 98
47440940 CGGCCACATT
* *
47440950 ATGAAAGCCAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCTAGATATGCAAGAT-AGTGTA
1 ATGAAAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGAGATATGAAAG-TCAGTGTA
* * *
47441013 AGACCTGTCTGGGATATGGCATCGACACCGATAG
65 AGACCTATCTGGAACATGGCATCGACACCGATAG
* * * * *
47441047 ATGAGAGCCAGTGTAAGACCTGTCTGGGACATGGCATTGGCTTCGATATATGAAAGTCAGTGTAA
1 ATGAAAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGAGATATGAAAGTCAGTGTAA
* ***
47441112 GACCTATCTGGAACATGGCATCCACTTAGATATG
66 GACCTATCTGGAACATGGCATCGACACCGATA-G
* * *
47441146 -TG--AGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGC
1 ATGAAAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGC
47441185 ATCGTACTCT
Statistics
Matches: 115, Mismatches: 19, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
96 12 0.10
97 50 0.43
98 52 0.45
99 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.25
Consensus pattern (98 bp):
ATGAAAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGAGATATGAAAGTCAGTGTAA
GACCTATCTGGAACATGGCATCGACACCGATAG
Found at i:47441144 original size:49 final size:49
Alignment explanation
Indices: 47440949--47441181 Score: 190
Period size: 49 Copynumber: 4.8 Consensus size: 49
47440939 TCGGCCACAT
*
47440949 TATGAAAGCCAGTGTAAGACATGTCTGGGACAT-GCATCGGC-CTCTAG--A
1 TATGAAAGCCAGTGTAAGACCTGTCTGGGACATGGCATC--CACT-TAGATA
* ** * * ***
47440997 TATGCAAGATAGTGTAAGACCTGTCTGGGATATGGCATCGACACCGATA
1 TATGAAAGCCAGTGTAAGACCTGTCTGGGACATGGCATCCACTTAGATA
* * *** *
47441046 GATGAGAGCCAGTGTAAGACCTGTCTGGGACATGGCATTGGCTTCGATA
1 TATGAAAGCCAGTGTAAGACCTGTCTGGGACATGGCATCCACTTAGATA
* * *
47441095 TATGAAAGTCAGTGTAAGACCTATCTGGAACATGGCATCCACTTAGATA
1 TATGAAAGCCAGTGTAAGACCTGTCTGGGACATGGCATCCACTTAGATA
* * * *
47441144 TGTG--AGCTAGTGTAAGACCATGTTTGGAACATGGCATC
1 TATGAAAGCCAGTGTAAGACC-TGTCTGGGACATGGCATC
47441182 GGCATCGTAC
Statistics
Matches: 147, Mismatches: 33, Indels: 10
0.77 0.17 0.05
Matches are distributed among these distances:
47 14 0.10
48 45 0.31
49 88 0.60
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.25
Consensus pattern (49 bp):
TATGAAAGCCAGTGTAAGACCTGTCTGGGACATGGCATCCACTTAGATA
Found at i:47456078 original size:34 final size:34
Alignment explanation
Indices: 47456040--47456117 Score: 104
Period size: 34 Copynumber: 2.3 Consensus size: 34
47456030 GTGGCAGTCT
* * *
47456040 AGTATCAGTGTTGGCCTTAGCCCA-TAGCAGTAAC
1 AGTATCAGTATGGGCCTTAGCCCATTA-CAATAAC
*
47456074 AGTATCAATATGGGCCTTAGCCCATTACAATAAC
1 AGTATCAGTATGGGCCTTAGCCCATTACAATAAC
47456108 AGTATCAGTA
1 AGTATCAGTA
47456118 ATGCAATAGA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
34 36 0.95
35 2 0.05
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (34 bp):
AGTATCAGTATGGGCCTTAGCCCATTACAATAAC
Found at i:47456173 original size:22 final size:23
Alignment explanation
Indices: 47456136--47456178 Score: 79
Period size: 22 Copynumber: 1.9 Consensus size: 23
47456126 GAAATTCTAC
47456136 CCATCCATCCCCTACACTCCACT
1 CCATCCATCCCCTACACTCCACT
47456159 CCATCCAT-CCCTACACTCCA
1 CCATCCATCCCCTACACTCCA
47456179 TGTGGGGAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.23, C:0.56, G:0.00, T:0.21
Consensus pattern (23 bp):
CCATCCATCCCCTACACTCCACT
Found at i:47463938 original size:21 final size:21
Alignment explanation
Indices: 47463913--47463976 Score: 53
Period size: 21 Copynumber: 3.0 Consensus size: 21
47463903 TATAGTATAC
47463913 ATAAAATACAAATAATTTAAT
1 ATAAAATACAAATAATTTAAT
47463934 AT-AAATAACATAAATAA--TAAT
1 ATAAAAT-AC--AAATAATTTAAT
* * *
47463955 ATAAATTACAAGTAGTTTAAT
1 ATAAAATACAAATAATTTAAT
47463976 A
1 A
47463977 ATGATATATA
Statistics
Matches: 34, Mismatches: 3, Indels: 12
0.69 0.06 0.24
Matches are distributed among these distances:
19 4 0.12
20 4 0.12
21 17 0.50
22 3 0.09
23 6 0.18
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.33
Consensus pattern (21 bp):
ATAAAATACAAATAATTTAAT
Found at i:47464001 original size:30 final size:27
Alignment explanation
Indices: 47463946--47464006 Score: 77
Period size: 30 Copynumber: 2.1 Consensus size: 27
47463936 AAATAACATA
* *
47463946 AATAATAATATAAATTACAAGTAGTTT
1 AATAATAATATAAAATACAAATAGTTT
47463973 AATAATGATATATAAAAATACAAATAGTTT
1 AATAAT-A-ATAT-AAAATACAAATAGTTT
47464003 AATA
1 AATA
47464007 CACAAGTCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 6 0.21
28 1 0.03
29 4 0.14
30 18 0.62
ACGTcount: A:0.56, C:0.03, G:0.07, T:0.34
Consensus pattern (27 bp):
AATAATAATATAAAATACAAATAGTTT
Found at i:47465742 original size:44 final size:43
Alignment explanation
Indices: 47465682--47465921 Score: 203
Period size: 45 Copynumber: 5.4 Consensus size: 43
47465672 TAGTCTTACA
* * * * *
47465682 GCAACTTTAGGAAGATAAGGTTTGTGACTTCAACCTGCTCCACT
1 GCAACTTCAGGGAGATAAGATTTGT-ACTTTAATCTGCTCCACT
* * *
47465726 GCATCTTCAGGGAGATAAGGATTATG-GCTTTGATCTGCTCCACT
1 GCAACTTCAGGGAGATAA-GATT-TGTACTTTAATCTGCTCCACT
* * * * *
47465770 GGAACTTCAGGGAGATAAGATCTGCCATCTTTAGTCTGCTCCATT
1 GCAACTTCAGGGAGATAAGATTTG-TA-CTTTAATCTGCTCCACT
* * *
47465815 GCAACTTTAGGGAGATAAGACTTGCTATCTTTAGTCTGCTCCACT
1 GCAACTTCAGGGAGATAAGATTTG-TA-CTTTAATCTGCTCCACT
* * ** * * *
47465860 GCAAATTCAAGGAGATAAGATTACTACTTCAACCTGCTTCACT
1 GCAACTTCAGGGAGATAAGATTTGTACTTTAATCTGCTCCACT
47465903 GCAACTTCAGGGAGATAAG
1 GCAACTTCAGGGAGATAAG
47465922 GTTTTCAATC
Statistics
Matches: 158, Mismatches: 33, Indels: 11
0.78 0.16 0.05
Matches are distributed among these distances:
42 2 0.01
43 33 0.21
44 47 0.30
45 74 0.47
46 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.30
Consensus pattern (43 bp):
GCAACTTCAGGGAGATAAGATTTGTACTTTAATCTGCTCCACT
Found at i:47465920 original size:88 final size:86
Alignment explanation
Indices: 47465708--47466008 Score: 248
Period size: 88 Copynumber: 3.4 Consensus size: 86
47465698 AAGGTTTGTG
* * ** *
47465708 ACTTCAACCTGCTCCACTGCATCTTCAGGGAGATAAGGATTATGGCTTT-GATCTGCTCCACTGG
1 ACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAA-GATTCTATCTTTAG-TCTGCTCCACTGC
* * *
47465772 AACTTCAGGGAGATAAGATCTGCC
64 AACTTCAAGGAGATAAGAT-TACT
* ** * *
47465796 ATCTTTAGTCTGCTCCATTGCAACTTTAGGGAGATAAGACTTGCTATCTTTAGTCTGCTCCACTG
1 A-CTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGA-TT-CTATCTTTAGTCTGCTCCACTG
*
47465861 CAAATTCAAGGAGATAAGATTACT
63 CAACTTCAAGGAGATAAGATTACT
* * * * *
47465885 ACTTCAACCTGCTTCACTGCAACTTCAGGGAGATAAGGTTTTCAATCTTCAGTCTGCTTCC-TTG
1 ACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAA-G-ATTCTATCTTTAGTCTGC-TCCACTG
* * * * *
47465949 CTACCTCAAGAAGATAAGACTAGT
63 CAACTTCAAGGAGATAAGATTACT
* * * *
47465973 -CTTCAACCTGCTCTATTGCTACTTTAGGGAGATAAG
1 ACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAG
47466009 GCTGGTGGCT
Statistics
Matches: 171, Mismatches: 35, Indels: 16
0.77 0.16 0.07
Matches are distributed among these distances:
86 1 0.01
87 30 0.18
88 65 0.38
89 40 0.23
90 34 0.20
91 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (86 bp):
ACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGATTCTATCTTTAGTCTGCTCCACTGCAA
CTTCAAGGAGATAAGATTACT
Found at i:47465964 original size:133 final size:134
Alignment explanation
Indices: 47465716--47465969 Score: 298
Period size: 133 Copynumber: 1.9 Consensus size: 134
47465706 TGACTTCAAC
** * * ** * *
47465716 CTGCTCCACTGCATCTTCAGGGAGATAAGGATTATGGCTTTGATCTGCTCCACTGGAACTTCAGG
1 CTGCTCCACTGCAAATTCAAGGAGATAAGGATTATGACTTCAACCTGCTCCACTGCAACTTCAGG
* * * * * *
47465781 GAGATAAGATCTGCCATCTTTAGTCTGCTCCATTGCAACTTTAGGGAGATAAGACTTGCTATCTT
66 GAGATAAGATCTGCAATCTTCAGTCTGCTCCATTGCAACCTCAAGAAGATAAGACTTGCTATCTT
47465846 TAGT
131 TAGT
*
47465850 CTGCTCCACTGCAAATTCAAGGAGATAA-GATTACT-ACTTCAACCTGCTTCACTGCAACTTCAG
1 CTGCTCCACTGCAAATTCAAGGAGATAAGGATTA-TGACTTCAACCTGCTCCACTGCAACTTCAG
* * * *
47465913 GGAGATAAGGTTTTCAATCTTCAGTCTGCTTCC-TTGCTACCTCAAGAAGATAAGACT
65 GGAGATAAGATCTGCAATCTTCAGTCTGC-TCCATTGCAACCTCAAGAAGATAAGACT
47465970 AGTCTTCAAC
Statistics
Matches: 99, Mismatches: 19, Indels: 5
0.80 0.15 0.04
Matches are distributed among these distances:
133 70 0.71
134 29 0.29
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (134 bp):
CTGCTCCACTGCAAATTCAAGGAGATAAGGATTATGACTTCAACCTGCTCCACTGCAACTTCAGG
GAGATAAGATCTGCAATCTTCAGTCTGCTCCATTGCAACCTCAAGAAGATAAGACTTGCTATCTT
TAGT
Found at i:47466549 original size:177 final size:177
Alignment explanation
Indices: 47465911--47466628 Score: 869
Period size: 174 Copynumber: 4.1 Consensus size: 177
47465901 CTGCAACTTC
* * * *
47465911 AGGGAGATAAGGTTTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAAGAAGATAAGACTA--GTC
1 AGGGAGATAAGATCTTCAATATTCAGTCTGCTTCCTTGCTACCTCAAGAAGATAAGACTACCATC
* * * * *
47465974 TTCAACCTGCTCTATTGCTACTTTAGGGAGATAAGGCTGGTGGCTAAAATCTTCTCCCCTGCTAC
66 TTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTAC
* * *
47466039 CTCGGGAAGATAAGATTCGCCATCCTCGATCTACTCTACTACTGCTT
131 CTCGGGAAGATAAGATTCGCCATCTTCAATCTACTCCACTACTGCTT
* * * * *
47466086 AGGGAGATAGGATCTTCAAT-CTCAGTCTGCTTCCTTGCTACCTCAAGAAGGTAAGACT-TCA-A
1 AGGGAGATAAGATCTTCAATATTCAGTCTGCTTCCTTGCTACCTCAAGAAGATAAGACTACCATC
* * * * *
47466148 TTCAGCCTGCTCCCTTTCTACCTTAG-GAAGATAAGGCTGGTGGCTAAAATCTACTCCCCTGCTA
66 TTCAACCTGCTCTCTTGCTACCTCAGAG-AGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTA
* * * * ** **
47466212 CCTTGGGAAGATGAGATTCACCACCTTTGATCTACTCCACTACTATTT
130 CCTCGGGAAGATAAGATTCGCCATCTTCAATCTACTCCACTACTGCTT
* * *
47466260 AGGGAGATAAGATCTTC-ATCATT-AGTCTGCTTCCTTGTTACCT-AAGTAATATAAGACTACAA
1 AGGGAGATAAGATCTTCAAT-ATTCAGTCTGCTTCCTTGCTACCTCAAG-AAGATAAGACTACCA
* *
47466322 TCTTCAACATGCTCTCTTGCTACTTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCT
64 TCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCT
* * * **
47466387 ACCTCGGGAAGATAAGATTTGCAATCTTCAATCTGCTCCACTGTTGCTT
129 ACCTCGGGAAGATAAGATTCGCCATCTTCAATCTACTCCACTACTGCTT
* * * *
47466436 AGGGAGATAAGATCTTCAATATTCAGTTTGTTTCCTTGTTACCTCAGGAAGATAAGACTACCATC
1 AGGGAGATAAGATCTTCAATATTCAGTCTGCTTCCTTGCTACCTCAAGAAGATAAGACTACCATC
47466501 TTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTAC
66 TTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTAC
* ** * * * *
47466566 ATCGAAAAGATAAGATTCTCCATCTTCAATCTACTCCACTTCTATCTC
131 CTCGGGAAGATAAGATTCGCCATCTTCAATCTACTCCACTACT-GCTT
*
47466614 AGGGAGATGAGATCT
1 AGGGAGATAAGATCT
47466629 GTGAATTCAC
Statistics
Matches: 461, Mismatches: 69, Indels: 23
0.83 0.12 0.04
Matches are distributed among these distances:
173 6 0.01
174 175 0.38
175 19 0.04
176 110 0.24
177 133 0.29
178 18 0.04
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (177 bp):
AGGGAGATAAGATCTTCAATATTCAGTCTGCTTCCTTGCTACCTCAAGAAGATAAGACTACCATC
TTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTAC
CTCGGGAAGATAAGATTCGCCATCTTCAATCTACTCCACTACTGCTT
Found at i:47471316 original size:19 final size:19
Alignment explanation
Indices: 47471292--47471337 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
47471282 GTGAAAAGCT
47471292 AATGCAAATG-ATGCAATG
1 AATGCAAATGCATGCAATG
*
47471310 CAATGCAAATGCATGGAATG
1 -AATGCAAATGCATGCAATG
47471330 AATGCAAA
1 AATGCAAA
47471338 AGAATGAAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.46, C:0.13, G:0.22, T:0.20
Consensus pattern (19 bp):
AATGCAAATGCATGCAATG
Found at i:47471974 original size:22 final size:22
Alignment explanation
Indices: 47471949--47471993 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
47471939 TTCACTATAT
47471949 GTGGCTCGGCTCTAAAGAAAGG
1 GTGGCTCGGCTCTAAAGAAAGG
47471971 GTGGCTCGGCTCTAAAGAAAGG
1 GTGGCTCGGCTCTAAAGAAAGG
47471993 G
1 G
47471994 CACTTGAACC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.27, C:0.18, G:0.38, T:0.18
Consensus pattern (22 bp):
GTGGCTCGGCTCTAAAGAAAGG
Found at i:47478703 original size:18 final size:18
Alignment explanation
Indices: 47478666--47478704 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
47478656 TTGGAAATCA
*
47478666 AAATTATTAAAAGATGAT
1 AAATTATTAAAAGATAAT
47478684 AAATTATTAAATAGA-AAT
1 AAATTATTAAA-AGATAAT
47478702 AAA
1 AAA
47478705 AATCATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 16 0.84
19 3 0.16
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (18 bp):
AAATTATTAAAAGATAAT
Found at i:47479016 original size:18 final size:18
Alignment explanation
Indices: 47478972--47479008 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
47478962 CAACTTTTAC
47478972 AAAGTGA-TTTTGATGAA
1 AAAGTGATTTTTGATGAA
47478989 AAAGTGATTTTTGATGAA
1 AAAGTGATTTTTGATGAA
47479007 AA
1 AA
47479009 CATGATTTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.43, C:0.00, G:0.22, T:0.35
Consensus pattern (18 bp):
AAAGTGATTTTTGATGAA
Found at i:47499648 original size:34 final size:34
Alignment explanation
Indices: 47499609--47499677 Score: 111
Period size: 34 Copynumber: 2.0 Consensus size: 34
47499599 TCAGCTACCT
* *
47499609 TAGAAGAATACATATGCACTGATTAAGTATTGCA
1 TAGAAGAATAAAAATGCACTGATTAAGTATTGCA
*
47499643 TAGAAGGATAAAAATGCACTGATTAAGTATTGCA
1 TAGAAGAATAAAAATGCACTGATTAAGTATTGCA
47499677 T
1 T
47499678 CCATTAATTA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.42, C:0.10, G:0.19, T:0.29
Consensus pattern (34 bp):
TAGAAGAATAAAAATGCACTGATTAAGTATTGCA
Found at i:47503794 original size:30 final size:31
Alignment explanation
Indices: 47503760--47503817 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
47503750 CATTTAATCT
47503760 AACTTTGGAAAAATTACA-TTTTTCCCCCTA
1 AACTTTGGAAAAATTACACTTTTTCCCCCTA
* * *
47503790 AACTTTTGCATAATTACACTTTTTCCCC
1 AACTTTGGAAAAATTACACTTTTTCCCC
47503818 TAGGCTCGGG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 15 0.62
31 9 0.38
ACGTcount: A:0.29, C:0.26, G:0.05, T:0.40
Consensus pattern (31 bp):
AACTTTGGAAAAATTACACTTTTTCCCCCTA
Found at i:47511281 original size:30 final size:30
Alignment explanation
Indices: 47511236--47511295 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
47511226 ATTTAATACG
47511236 AACTTTGGCAAAATTACA-TTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTT-CCCCTA
* *
47511266 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTGGCAAAATTACACTTTTTCCCCTA
47511296 GGCTCGAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.28, C:0.25, G:0.07, T:0.40
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTTCCCCTA
Found at i:47513934 original size:25 final size:25
Alignment explanation
Indices: 47513869--47513934 Score: 64
Period size: 25 Copynumber: 2.6 Consensus size: 25
47513859 TCTCAAAAAT
* *
47513869 TTAATTAAA-TAAAAATTATTAATGA
1 TTAAATAAATTAAAAATTA-TAATAA
*
47513894 TTCAATAAATTGAAAAATTA-AATAA
1 TTAAATAAATT-AAAAATTATAATAA
47513919 TTAAATAAAATTAAAA
1 TTAAAT-AAATTAAAA
47513935 TCTAGGAGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
25 20 0.59
26 6 0.18
27 8 0.24
ACGTcount: A:0.61, C:0.02, G:0.03, T:0.35
Consensus pattern (25 bp):
TTAAATAAATTAAAAATTATAATAA
Found at i:47514574 original size:18 final size:18
Alignment explanation
Indices: 47514537--47514570 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
47514527 AATCAAATAT
47514537 ATGCATATTAAATTATTA
1 ATGCATATTAAATTATTA
*
47514555 ATGC-TATTAATTTATT
1 ATGCATATTAAATTATT
47514571 TAATCAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (18 bp):
ATGCATATTAAATTATTA
Found at i:47517517 original size:20 final size:20
Alignment explanation
Indices: 47517494--47517532 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
47517484 TAAACATGGT
47517494 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
47517514 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
47517533 TGTATTCACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:47517672 original size:49 final size:49
Alignment explanation
Indices: 47517583--47517707 Score: 207
Period size: 49 Copynumber: 2.6 Consensus size: 49
47517573 GAGGAAGTGC
* * * *
47517583 AAAAGGGCTTACGCCCAAGTTA-TCAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTATGCCCCAATTATT
47517631 AAAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTATGCCCCAATTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTATGCCCCAATTATT
47517680 AAAAGGGCTTATGCCCCAGTTATTAAAA
1 AAAAGGGCTTATGCCCCAGTTATTAAAA
47517708 GAGGCTAGGC
Statistics
Matches: 72, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
48 20 0.28
49 52 0.72
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (49 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTATGCCCCAATTATT
Found at i:47517723 original size:25 final size:24
Alignment explanation
Indices: 47517583--47517727 Score: 211
Period size: 24 Copynumber: 6.0 Consensus size: 24
47517573 GAGGAAGTGC
* * *
47517583 AAAAGGGCTTACGCCCAAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
47517607 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
47517631 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
47517655 AAAAAGGGCTTATGCCCCAATTATT
1 -AAAAGGGCTTATGCCCCAGTTATT
47517680 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
47517704 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
47517728 ATGATAAAGT
Statistics
Matches: 112, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
24 78 0.70
25 34 0.30
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:47525705 original size:25 final size:25
Alignment explanation
Indices: 47525671--47525720 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
47525661 CCTTATAATA
*
47525671 TGAAACTGACCGTTTTGCCCCTAGG
1 TGAAAATGACCGTTTTGCCCCTAGG
47525696 TGAAAATGACCGTTTTGCCCCTAGG
1 TGAAAATGACCGTTTTGCCCCTAGG
47525721 GTTTAAATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (25 bp):
TGAAAATGACCGTTTTGCCCCTAGG
Found at i:47525787 original size:20 final size:20
Alignment explanation
Indices: 47525764--47525822 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
47525754 TAAACATGGT
*
47525764 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAA
47525784 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
47525804 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
47525823 TGTATTCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:47525899 original size:24 final size:24
Alignment explanation
Indices: 47525872--47526136 Score: 379
Period size: 24 Copynumber: 11.0 Consensus size: 24
47525862 GGAGGAAGTG
47525872 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
47525896 CAAAAGGGCTTATGCCCTAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
47525920 CAAAAGGGCTTATGCCCCTGTGAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
47525944 CAAAAGGGCTTATGCCCCTGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
47525968 CAAAAGGGCTTATGCCCTAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
47525992 CAAAAGGGCTTATGCCCTAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
47526016 CAAAAGGGCTTATGCCCCAATTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
47526040 TAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
47526064 CAAAAGGGTTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* * *
47526088 TAAAAGGGATTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
47526112 TAAAAGAGG-TTAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
47526137 ATGATAAAGC
Statistics
Matches: 221, Mismatches: 18, Indels: 3
0.91 0.07 0.01
Matches are distributed among these distances:
24 211 0.95
25 10 0.05
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:47535089 original size:46 final size:48
Alignment explanation
Indices: 47535022--47535236 Score: 223
Period size: 46 Copynumber: 4.6 Consensus size: 48
47535012 TAAGTTGCCA
*
47535022 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-ATCTCAAG-TG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGCCG
* *
47535068 ATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCATCTCGTAGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTC-AAGCCG
* * *
47535116 ATG-CATGTCCCAGACGT-ATCTTACACTGGCTTA-CATCTCAAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAA-GCCG
* * ** * **
47535162 ATG-CATGTCCCAGACAT-GTCTTACACTAGCAC-TCGCCTCAGTGTTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCA-AGCCG
47535208 ATGCCATGTCCCAGACATGGTCTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
47535237 AGCTTCTCTA
Statistics
Matches: 143, Mismatches: 17, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
45 3 0.02
46 96 0.67
47 30 0.21
48 14 0.10
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.27
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGCCG
Found at i:47535225 original size:47 final size:47
Alignment explanation
Indices: 47535157--47535286 Score: 158
Period size: 47 Copynumber: 2.8 Consensus size: 47
47535147 TACATCTCAA
*
47535157 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCGCCTCA-GT
1 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCACTC-CCTAATGT
** * *
47535204 -GTTGATGCCATGTCCCAGACATGGTCTTACACTAGC-TTCTCTAATGT
1 GGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCCCTAATGT
*
47535251 GGCCGATGCATGTCCCATACATGTCTTACACTAGCA
1 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCA
47535287 AATACAAGTG
Statistics
Matches: 70, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
46 21 0.30
47 31 0.44
48 18 0.26
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (47 bp):
GGCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCCCTAATGT
Found at i:47535640 original size:30 final size:30
Alignment explanation
Indices: 47535599--47535657 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
47535589 AAATTCACAT
* * *
47535599 CCTTGGTAAAATGACCATTTTGTCCCTAGA
1 CCTTGGCAAAATAACCATTTTGCCCCTAGA
47535629 CCTTGGCAAAATAACCATTTTGCCCCTAG
1 CCTTGGCAAAATAACCATTTTGCCCCTAG
47535658 GCTCGAAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (30 bp):
CCTTGGCAAAATAACCATTTTGCCCCTAGA
Found at i:47538288 original size:27 final size:27
Alignment explanation
Indices: 47538257--47538308 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
47538247 TGTAGCAATT
* *
47538257 CATACAACCCATGTAATAGTAATTTAA
1 CATACAACCCATGTAACAATAATTTAA
**
47538284 CATACAATTCATGTAACAATAATTT
1 CATACAACCCATGTAACAATAATTT
47538309 GCCATTCAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.44, C:0.17, G:0.06, T:0.33
Consensus pattern (27 bp):
CATACAACCCATGTAACAATAATTTAA
Found at i:47551765 original size:19 final size:20
Alignment explanation
Indices: 47551726--47551765 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
47551716 CCATCCCAAT
47551726 CCAACCAACACACCACCTGTA
1 CCAACCAACACACCA-CTGTA
47551747 CCAACCAACACACCA-TGTA
1 CCAACCAACACACCACTGTA
47551766 GGGATAACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.21
21 15 0.79
ACGTcount: A:0.40, C:0.45, G:0.05, T:0.10
Consensus pattern (20 bp):
CCAACCAACACACCACTGTA
Found at i:47551968 original size:32 final size:32
Alignment explanation
Indices: 47551917--47551987 Score: 94
Period size: 32 Copynumber: 2.2 Consensus size: 32
47551907 ATAAGCTATA
47551917 AATATGA-TGGCACAAAGCCATCAGTAGCTG-T
1 AATATGATTGGCACAAAGCCATCAGTA-CTGCT
*
47551948 AGTATGATTGGCA-AAGAGCCATCAGTACTGCT
1 AATATGATTGGCACAA-AGCCATCAGTACTGCT
47551980 AATATGAT
1 AATATGAT
47551988 CGACACAGAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
31 11 0.31
32 24 0.69
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (32 bp):
AATATGATTGGCACAAAGCCATCAGTACTGCT
Found at i:47552023 original size:22 final size:21
Alignment explanation
Indices: 47551991--47552071 Score: 99
Period size: 22 Copynumber: 3.7 Consensus size: 21
47551981 ATATGATCGA
* *
47551991 CACAGAACCATGATCAAGATGG
1 CACAGAGCCATAATC-AGATGG
47552013 CACAGAGCCATAATCGAGATGG
1 CACAGAGCCATAATC-AGATGG
**
47552035 CACAGAGCCATCTTCAGAATGG
1 CACAGAGCCATAATCAG-ATGG
47552057 CACAGAGCCATAATC
1 CACAGAGCCATAATC
47552072 GGATCAAGTG
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
21 2 0.04
22 49 0.96
ACGTcount: A:0.37, C:0.26, G:0.22, T:0.15
Consensus pattern (21 bp):
CACAGAGCCATAATCAGATGG
Found at i:47554046 original size:24 final size:24
Alignment explanation
Indices: 47554001--47554046 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
47553991 CCTAAAATCC
*
47554001 CTCCATGATTTCCTCCCCAATCTT
1 CTCCATGATTTCCTCCACAATCTT
* * *
47554025 CTCCTTGATTTTCTCCATAATC
1 CTCCATGATTTCCTCCACAATC
47554047 CATTCCTTGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.17, C:0.37, G:0.04, T:0.41
Consensus pattern (24 bp):
CTCCATGATTTCCTCCACAATCTT
Found at i:47555986 original size:22 final size:22
Alignment explanation
Indices: 47555932--47556016 Score: 75
Period size: 22 Copynumber: 4.0 Consensus size: 22
47555922 AATATGATCA
* * *
47555932 GCACAGAACCATGATCAAGATG
1 GCACAGAGCCATAATCAGGATG
* *
47555954 GCA-GGAGCCATAATCGGGATG
1 GCACAGAGCCATAATCAGGATG
** * *
47555975 GCACAGAGCCATCTTTAGAATG
1 GCACAGAGCCATAATCAGGATG
47555997 GCACAGAGCCATAATC-GGAT
1 GCACAGAGCCATAATCAGGAT
47556017 CAAGTAGCTT
Statistics
Matches: 47, Mismatches: 15, Indels: 3
0.72 0.23 0.05
Matches are distributed among these distances:
21 19 0.40
22 28 0.60
ACGTcount: A:0.34, C:0.22, G:0.27, T:0.16
Consensus pattern (22 bp):
GCACAGAGCCATAATCAGGATG
Found at i:47556089 original size:43 final size:43
Alignment explanation
Indices: 47556041--47556123 Score: 130
Period size: 43 Copynumber: 1.9 Consensus size: 43
47556031 CCGTCGGCAG
* * **
47556041 GTCCACAGTCGTCTCGTGTGACCCGTGTAACCTTAACAGAATA
1 GTCCACAGTCATCTCGTGCGACCCGTACAACCTTAACAGAATA
47556084 GTCCACAGTCATCTCGTGCGACCCGTACAACCTTAACAGA
1 GTCCACAGTCATCTCGTGCGACCCGTACAACCTTAACAGA
47556124 TCAATACTGG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (43 bp):
GTCCACAGTCATCTCGTGCGACCCGTACAACCTTAACAGAATA
Found at i:47556504 original size:27 final size:27
Alignment explanation
Indices: 47556421--47556506 Score: 109
Period size: 27 Copynumber: 3.2 Consensus size: 27
47556411 TACCCTACAA
* *
47556421 GGGGTATTTCGGTAATTTTAAAAATTA
1 GGGGTATTTCGGTAATTTTACAAATTG
* *
47556448 GAGGTATTTCGATAATTTTACAAATTG
1 GGGGTATTTCGGTAATTTTACAAATTG
* * *
47556475 GGGGTATTTTGGTAATCTTACAAATCG
1 GGGGTATTTCGGTAATTTTACAAATTG
47556502 GGGGT
1 GGGGT
47556507 CTTAACTACC
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.29, C:0.07, G:0.26, T:0.38
Consensus pattern (27 bp):
GGGGTATTTCGGTAATTTTACAAATTG
Found at i:47572529 original size:14 final size:14
Alignment explanation
Indices: 47572510--47572539 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
47572500 TTGAAAGTTT
47572510 GTCCTTGGAGGAAA
1 GTCCTTGGAGGAAA
*
47572524 GTCCTTGGAGGCAA
1 GTCCTTGGAGGAAA
47572538 GT
1 GT
47572540 TGAGTCCTCG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.23, C:0.17, G:0.37, T:0.23
Consensus pattern (14 bp):
GTCCTTGGAGGAAA
Found at i:47573094 original size:16 final size:17
Alignment explanation
Indices: 47573073--47573107 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
47573063 AAAAATTATG
47573073 AAATAAA-AACAAACAA
1 AAATAAACAACAAACAA
*
47573089 AAATAAACATCAAACAA
1 AAATAAACAACAAACAA
47573106 AA
1 AA
47573108 GTCATCCCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.77, C:0.14, G:0.00, T:0.09
Consensus pattern (17 bp):
AAATAAACAACAAACAA
Found at i:47575553 original size:661 final size:661
Alignment explanation
Indices: 47574293--47575614 Score: 2608
Period size: 661 Copynumber: 2.0 Consensus size: 661
47574283 CATATGTTAT
47574293 TTCTAGTACTATAATTAGGCAATTAATTTCATGCACATCAAACACCAAATAAATCAAACAAGTGG
1 TTCTAGTACTATAATTAGGCAATTAATTTCATGCACATCAAACACCAAATAAATCAAACAAGTGG
47574358 CATTCCTTAGTTGCTAGTAAACCACTCCATGGAAGCTTCATTTATCATTAGTAAAAATTCATGCT
66 CATTCCTTAGTTGCTAGTAAACCACTCCATGGAAGCTTCATTTATCATTAGTAAAAATTCATGCT
47574423 TCACACATCGTGTTATCAATCAACAATACACTGTAAGTCATTTAATAATTAAACTCAAACATGCC
131 TCACACATCGTGTTATCAATCAACAATACACTGTAAGTCATTTAATAATTAAACTCAAACATGCC
47574488 ACAAAATTATTATAAAACCATCCAAAATAAATGTCCAAAGTCCAATTACAACCAAAGTCAAACTA
196 ACAAAATTATTATAAAACCATCCAAAATAAATGTCCAAAGTCCAATTACAACCAAAGTCAAACTA
47574553 ATTCTCGGGAGTTCGAAAATGCCTGATTACAGTCTCTAAAATGTGTAATAAAGTCTCTAGCAAGC
261 ATTCTCGGGAGTTCGAAAATGCCTGATTACAGTCTCTAAAATGTGTAATAAAGTCTCTAGCAAGC
*
47574618 CTAAATCTCTTGGAACTCTCTTGGTCGACTCCTCTACTCCTCAATCCCGATGAGTATTTGCATGA
326 CTAAATCTCTTGGAACTCTCTTGGTCGACTCCTCTACTCCTCAATCCCGATCAGTATTTGCATGA
47574683 ATTATGAGGGTGTGAGCTTTAAAAAGCTCAATGAGTTAATAAAAACGACTAGTAAATTAACATTA
391 ATTATGAGGGTGTGAGCTTTAAAAAGCTCAATGAGTTAATAAAAACGACTAGTAAATTAACATTA
47574748 AATTCACGCTTAATTCATAACAAATCATTCACCAATTGTCAACCAAAATAATTAAACATGTCAAC
456 AATTCACGCTTAATTCATAACAAATCATTCACCAATTGTCAACCAAAATAATTAAACATGTCAAC
47574813 TTAATTTCTATAAGTATTTTCAATGCCAAAAATCATTTATTCATGGCTTTCAATCATCAATTGAT
521 TTAATTTCTATAAGTATTTTCAATGCCAAAAATCATTTATTCATGGCTTTCAATCATCAATTGAT
47574878 ATAGAAACAATCACACATAAATATATTGGCATACACTTCTCATGGCTTAATCGACTGATCATAAA
586 ATAGAAACAATCACACATAAATATATTGGCATACACTTCTCATGGCTTAATCGACTGATCATAAA
47574943 TCAAATAAACA
651 TCAAATAAACA
*
47574954 TTCTAGTACTATAATTAGGCAATTAATTTCATGCACATCAAACACCGAATAAATCAAACAAGTGG
1 TTCTAGTACTATAATTAGGCAATTAATTTCATGCACATCAAACACCAAATAAATCAAACAAGTGG
47575019 CATTCCTTAGTTGCTAGTAAACCACTCCATGGAAGCTTCATTTATCATTAGTAAAAATTCATGCT
66 CATTCCTTAGTTGCTAGTAAACCACTCCATGGAAGCTTCATTTATCATTAGTAAAAATTCATGCT
*
47575084 TCACACATCGTGTTATCAATCAATAATACACTGTAAGTCATTTAATAATTAAACTCAAACATGCC
131 TCACACATCGTGTTATCAATCAACAATACACTGTAAGTCATTTAATAATTAAACTCAAACATGCC
47575149 ACAAAATTATTATAAAACCATCCAAAATAAATGTCCAAAGTCCAATTACAACCAAAGTCAAACTA
196 ACAAAATTATTATAAAACCATCCAAAATAAATGTCCAAAGTCCAATTACAACCAAAGTCAAACTA
47575214 ATTCTCGGGAGTTCGAAAATGCCTGATTACAGTCTCTAAAATGTGTAATAAAGTCTCTAGCAAGC
261 ATTCTCGGGAGTTCGAAAATGCCTGATTACAGTCTCTAAAATGTGTAATAAAGTCTCTAGCAAGC
*
47575279 CTAAATCTCTTGGAACTCTCTTGGTCGACTCCTCTACTCCTCAATCCTGATCAGTATTTGCATGA
326 CTAAATCTCTTGGAACTCTCTTGGTCGACTCCTCTACTCCTCAATCCCGATCAGTATTTGCATGA
47575344 ATTATGAGGGTGTGAGCTTTAAAAAGCTCAATGAGTTAATAAAAACGACTAGTAAATTAACATTA
391 ATTATGAGGGTGTGAGCTTTAAAAAGCTCAATGAGTTAATAAAAACGACTAGTAAATTAACATTA
47575409 AATTCACGCTTAATTCATAACAAATCATTCACCAATTGTCAACCAAAATAATTAAACATGTCAAC
456 AATTCACGCTTAATTCATAACAAATCATTCACCAATTGTCAACCAAAATAATTAAACATGTCAAC
47575474 TTAATTTCTATAAGTATTTTCAATGCCAAAAATCATTTATTCATGGCTTTCAATCATCAATTGAT
521 TTAATTTCTATAAGTATTTTCAATGCCAAAAATCATTTATTCATGGCTTTCAATCATCAATTGAT
47575539 ATAGAAACAATCACACATAAATATATTGGCATACACTTCTCATGGCTTAATCGACTGATCATAAA
586 ATAGAAACAATCACACATAAATATATTGGCATACACTTCTCATGGCTTAATCGACTGATCATAAA
47575604 TCAAATAAACA
651 TCAAATAAACA
47575615 GATCTACGAA
Statistics
Matches: 657, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
661 657 1.00
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (661 bp):
TTCTAGTACTATAATTAGGCAATTAATTTCATGCACATCAAACACCAAATAAATCAAACAAGTGG
CATTCCTTAGTTGCTAGTAAACCACTCCATGGAAGCTTCATTTATCATTAGTAAAAATTCATGCT
TCACACATCGTGTTATCAATCAACAATACACTGTAAGTCATTTAATAATTAAACTCAAACATGCC
ACAAAATTATTATAAAACCATCCAAAATAAATGTCCAAAGTCCAATTACAACCAAAGTCAAACTA
ATTCTCGGGAGTTCGAAAATGCCTGATTACAGTCTCTAAAATGTGTAATAAAGTCTCTAGCAAGC
CTAAATCTCTTGGAACTCTCTTGGTCGACTCCTCTACTCCTCAATCCCGATCAGTATTTGCATGA
ATTATGAGGGTGTGAGCTTTAAAAAGCTCAATGAGTTAATAAAAACGACTAGTAAATTAACATTA
AATTCACGCTTAATTCATAACAAATCATTCACCAATTGTCAACCAAAATAATTAAACATGTCAAC
TTAATTTCTATAAGTATTTTCAATGCCAAAAATCATTTATTCATGGCTTTCAATCATCAATTGAT
ATAGAAACAATCACACATAAATATATTGGCATACACTTCTCATGGCTTAATCGACTGATCATAAA
TCAAATAAACA
Found at i:47577013 original size:69 final size:69
Alignment explanation
Indices: 47576936--47577070 Score: 243
Period size: 69 Copynumber: 2.0 Consensus size: 69
47576926 TATTTTTGTG
* *
47576936 TACTTTTGAGAATAATTTTAGGTGAATTGAGAGAGTATTTTGATAACAAAATTGGTTGGATCTAT
1 TACTTTTGAGAATAATTTCAGGTGAATTGAGAGAGTATTTTGAGAACAAAATTGGTTGGATCTAT
47577001 TGGC
66 TGGC
*
47577005 TACTTTTGAGAATAATTTCAGGTGAATTGAGAGGGTATTTTGAGAACAAAATTGGTTGGATCTAT
1 TACTTTTGAGAATAATTTCAGGTGAATTGAGAGAGTATTTTGAGAACAAAATTGGTTGGATCTAT
47577070 T
66 T
47577071 CTCTAATGAT
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
69 63 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.39
Consensus pattern (69 bp):
TACTTTTGAGAATAATTTCAGGTGAATTGAGAGAGTATTTTGAGAACAAAATTGGTTGGATCTAT
TGGC
Found at i:47577047 original size:34 final size:33
Alignment explanation
Indices: 47576939--47577050 Score: 84
Period size: 34 Copynumber: 3.3 Consensus size: 33
47576929 TTTTGTGTAC
*
47576939 TTTTGAGAATAATTTTAGGTGAATTGAGAGAGTA
1 TTTTGAGAATAA-TTTAGGTGAATTGAGAGGGTA
* * * * ** *
47576973 TTTTGATAACAAAATT-GGTTGGATCT-ATTGGCTA
1 TTTTGAGAA-TAATTTAGG-TGAAT-TGAGAGGGTA
47577007 CTTTTGAGAATAATTTCAGGTGAATTGAGAGGGTA
1 -TTTTGAGAATAATTT-AGGTGAATTGAGAGGGTA
47577042 TTTTGAGAA
1 TTTTGAGAA
47577051 CAAAATTGGT
Statistics
Matches: 56, Mismatches: 15, Indels: 14
0.66 0.18 0.16
Matches are distributed among these distances:
33 2 0.04
34 32 0.57
35 20 0.36
36 2 0.04
ACGTcount: A:0.32, C:0.04, G:0.25, T:0.38
Consensus pattern (33 bp):
TTTTGAGAATAATTTAGGTGAATTGAGAGGGTA
Found at i:47577436 original size:16 final size:16
Alignment explanation
Indices: 47577415--47577445 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
47577405 CAACCCAAAT
*
47577415 TAATTATTTTCATTAA
1 TAATTATTTTAATTAA
47577431 TAATTATTTTAATTA
1 TAATTATTTTAATTA
47577446 CTTTAAAATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (16 bp):
TAATTATTTTAATTAA
Found at i:47581717 original size:40 final size:40
Alignment explanation
Indices: 47581673--47581753 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
47581663 TATTTGATTG
47581673 AGTAAAACTATGATTATGGTATAATTGTATTATAATTGTA
1 AGTAAAACTATGATTATGGTATAATTGTATTATAATTGTA
*
47581713 AGTAAAATTATGATTATGGTATAATTGTATTATAATTGTA
1 AGTAAAACTATGATTATGGTATAATTGTATTATAATTGTA
47581753 A
1 A
47581754 CATAACTAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.41, C:0.01, G:0.15, T:0.43
Consensus pattern (40 bp):
AGTAAAACTATGATTATGGTATAATTGTATTATAATTGTA
Found at i:47582638 original size:37 final size:37
Alignment explanation
Indices: 47582579--47582687 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
47582569 AGCTCAGACG
* *
47582579 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
47582616 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
47582653 TAATCTCCACACGTAGTCATCGGGTCTTACTCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
47582688 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:47582959 original size:48 final size:48
Alignment explanation
Indices: 47582833--47583017 Score: 300
Period size: 48 Copynumber: 3.8 Consensus size: 48
47582823 GCACATCGCC
*
47582833 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
47582883 TATATATTTCACATT-GACCATTCAGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
47582931 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
47582979 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
47583018 TGCATGTTCA
Statistics
Matches: 126, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
48 83 0.66
49 2 0.02
50 41 0.33
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:47583022 original size:98 final size:97
Alignment explanation
Indices: 47582833--47583016 Score: 309
Period size: 98 Copynumber: 1.9 Consensus size: 97
47582823 GCACATCGCC
*
47582833 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA-ATACATATTTCACATT
47582898 GACCATTCAGCTTTACCACATATGCATATCTCA
65 GACCATTCAGCTTTACCACATATGCATATCTCA
*
47582931 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-ATACATATTTCACATT-
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTG
*
47582994 AGCCATTCGGCTTTACCACATAT
66 A-CCATTCAGCTTTACCACATAT
47583017 ATGCATGTTC
Statistics
Matches: 82, Mismatches: 3, Indels: 4
0.92 0.03 0.04
Matches are distributed among these distances:
95 1 0.01
96 35 0.43
98 46 0.56
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.36
Consensus pattern (97 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTG
ACCATTCAGCTTTACCACATATGCATATCTCA
Found at i:47583066 original size:47 final size:47
Alignment explanation
Indices: 47582987--47583180 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
47582977 CATACATATT
* * * *
47582987 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
47583034 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
47583081 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
47583128 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
47583175 TCACAT
1 TCACAT
47583181 AAAATCCTAA
Statistics
Matches: 133, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 133 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:47583097 original size:94 final size:94
Alignment explanation
Indices: 47582940--47583180 Score: 290
Period size: 94 Copynumber: 2.6 Consensus size: 94
47582930 ATACATATTT
* * * *
47582940 CACATTAGCCATTCGGCTTTA-C-CACATATACATATCTCATACATAT-TTCACATTAGCCATTC
1 CACATTGGCCATTCGGCCTTATCACACATATACACA-CTC--ACAT-TCATCACATTAGCCATTC
* *
47583002 GGCTTTACCACATATATGCATGTTCATATTCAC
62 GGCCTTACCACATATATGCATGTTCACATTCAC
* ** *
47583035 CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCC
1 CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACATTAGCCATTCGGCC
* *
47583100 TTATCACATATATGCATGTTCACATTCAT
66 TTACCACATATATGCATGTTCACATTCAC
* * *
47583129 CACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACAT
47583181 AAAATCCTAA
Statistics
Matches: 127, Mismatches: 16, Indels: 7
0.85 0.11 0.05
Matches are distributed among these distances:
93 1 0.01
94 93 0.73
95 19 0.15
96 4 0.03
97 10 0.08
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (94 bp):
CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACATTAGCCATTCGGCC
TTACCACATATATGCATGTTCACATTCAC
Found at i:47583107 original size:22 final size:22
Alignment explanation
Indices: 47583080--47583151 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
47583070 GCTCACATTC
47583080 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
47583102 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
47583126 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
47583149 ATC
1 ATC
47583152 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:47586958 original size:31 final size:31
Alignment explanation
Indices: 47586920--47586979 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
47586910 ATACTTCCAC
47586920 TCGCTAATCCCCCATAGAAGGATTAGTTCGT
1 TCGCTAATCCCCCATAGAAGGATTAGTTCGT
47586951 TCGCTAATCCCCCATAGAAGGATTAGTTC
1 TCGCTAATCCCCCATAGAAGGATTAGTTC
47586980 ATCATGACTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (31 bp):
TCGCTAATCCCCCATAGAAGGATTAGTTCGT
Done.