Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 148 of 356
Found at i:47592006 original size:16 final size:17
Alignment explanation
Indices: 47591971--47592007 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
47591961 AAAATTTAAT
47591971 AAAATAAAACCTAAGAA
1 AAAATAAAACCTAAGAA
47591988 AAAATAAAACCTAAGAA
1 AAAATAAAACCTAAGAA
47592005 AAA
1 AAA
47592008 GGCTATCATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.73, C:0.11, G:0.05, T:0.11
Consensus pattern (17 bp):
AAAATAAAACCTAAGAA
Found at i:47592996 original size:46 final size:49
Alignment explanation
Indices: 47592857--47593083 Score: 210
Period size: 46 Copynumber: 4.8 Consensus size: 49
47592847 CCACATTATG
*
47592857 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ATTGAGACG-
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTA-TGAGATGT
* *
47592905 AGAGCTC-GTGTAAGA-CATGTTTGGGACAT-GCAACGGCCT-TGAGATGT
1 AGAGC-CAGTGTAAGACCATGTCTGGGACATGGCATCGG-CTATGAGATGT
* **
47592952 A-AGCCAGTGTAAGA-CATGTCTGGGACAT-GCGTCGGCTACAAGATGT
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTATGAGATGT
* * *
47592998 ---GTCAGTGTAAGACCATGCCTGGGACATGGCATCGGC-ATAGATATGT
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTAT-GAGATGT
** *
47593044 GAGAGGTAGTGTAAGACCATGTCTGGGACATGGCGTCGGC
1 -AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
47593084 CTCGATTTCG
Statistics
Matches: 148, Mismatches: 18, Indels: 24
0.78 0.09 0.13
Matches are distributed among these distances:
44 11 0.07
45 17 0.11
46 59 0.40
47 15 0.10
48 13 0.09
49 1 0.01
50 32 0.22
ACGTcount: A:0.26, C:0.19, G:0.33, T:0.22
Consensus pattern (49 bp):
AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTATGAGATGT
Found at i:47596911 original size:26 final size:26
Alignment explanation
Indices: 47596867--47596918 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
47596857 AAGGGTTAAG
*
47596867 AAGCAAGATGTACCAAAAATCGCATT
1 AAGCAAGATGTACCAAAAACCGCATT
**
47596893 AAGCAAGATGTACTGAAAACCGCATT
1 AAGCAAGATGTACCAAAAACCGCATT
47596919 TAGGATGAGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.44, C:0.19, G:0.17, T:0.19
Consensus pattern (26 bp):
AAGCAAGATGTACCAAAAACCGCATT
Found at i:47602977 original size:46 final size:46
Alignment explanation
Indices: 47602790--47603014 Score: 176
Period size: 46 Copynumber: 4.8 Consensus size: 46
47602780 TCAGGTTATT
* * * **
47602790 TGTATGCTAGTGTAAGACATGTCTGGGACATGCATCGACCACATTA
1 TGTAAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGA
* * * **
47602836 TG-AGAGCCAGTGTAAGACCATGTTTGGGAAATGGCATCGGC-ATTGAGA
1 TGTA-AGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-CAAGA
* * * *
47602884 TG-AGAGCTAGTGTAAGACATGTCTAGGACATGTATCAGCCT-CGAGA
1 TGTA-AGCTAGTGTAAGACATGTCTGGGACATGCATC-GGCTACAAGA
47602930 TGTAAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGA
1 TGTAAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGA
* *
47602976 TGT--G-TCAGTGTAAGACCATGCCTAGGACATGGCATCGGC
1 TGTAAGCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
47603015 ACGGATATGT
Statistics
Matches: 146, Mismatches: 22, Indels: 22
0.77 0.12 0.12
Matches are distributed among these distances:
43 1 0.01
44 10 0.07
45 16 0.11
46 68 0.47
47 27 0.18
48 24 0.16
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.24
Consensus pattern (46 bp):
TGTAAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGA
Found at i:47605444 original size:46 final size:47
Alignment explanation
Indices: 47605265--47605523 Score: 160
Period size: 46 Copynumber: 5.5 Consensus size: 47
47605255 TTTGTATGCT
* * * * **
47605265 AGTGTAAGCCGTGTCTGGGACATGCGTCGGCCACATTATG-AGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGATGTAGAGCC
** ** *
47605311 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ATTGAGA-CAAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-CAAGATGTAGAGCC
* ** *
47605359 AGTGTAAGACATGACTAAGACATGCATCGGGCT-CGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GGCTACAAGATGTAGAGCC
* *
47605405 AGTGTAAGACATGTCTGGGACATGCATTGGCTACAAGATGT---GTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGATGTAGAGCC
* * *
47605449 AGTGTAAGACCATG-CATGGGACATGGCATCGGC-ACGGATATGTGAGAGCT
1 AGTGTAAGA-CATGTC-TGGGACAT-GCATCGGCTAC-AAGATGT-AGAGCC
* *
47605499 AGTGGAAGATCATGTCTAGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
47605524 GCGTTGGCCT
Statistics
Matches: 166, Mismatches: 30, Indels: 31
0.73 0.13 0.14
Matches are distributed among these distances:
44 12 0.07
45 18 0.11
46 63 0.38
47 29 0.17
48 22 0.13
49 1 0.01
50 20 0.12
51 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGATGTAGAGCC
Found at i:47609036 original size:98 final size:100
Alignment explanation
Indices: 47608860--47609053 Score: 268
Period size: 98 Copynumber: 2.0 Consensus size: 100
47608850 TTTGAGATTT
* * *
47608860 TCTTTAATAAATTGTATGTAATTGTTTGGTAATTATTCATAACATCTCATTACTCGGGTCCGGTG
1 TCTTTAATAAATTGTATGCAATTGTTTGGTAATTATTCATAACATCTCATTACTCAGGTCCGATG
***
47608925 ATCGGATTGGGTAA-GGGGT-GTTACATTTATTGA
66 ATCGGACCAGGTAATGGGGTAGTTACATTTATTGA
* * *
47608958 TCTTTAATAAATTGTGTGCAGTTGTTTGGTAATTGTTCATAACATCTCATTACTCAGGTCCGATG
1 TCTTTAATAAATTGTATGCAATTGTTTGGTAATTATTCATAACATCTCATTACTCAGGTCCGATG
*
47609023 A-CTGGACCAGGTAATGGGGTATTTACATTTA
66 ATC-GGACCAGGTAATGGGGTAGTTACATTTA
47609054 GAACATGCAA
Statistics
Matches: 83, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
97 1 0.01
98 68 0.82
99 5 0.06
100 9 0.11
ACGTcount: A:0.26, C:0.13, G:0.22, T:0.40
Consensus pattern (100 bp):
TCTTTAATAAATTGTATGCAATTGTTTGGTAATTATTCATAACATCTCATTACTCAGGTCCGATG
ATCGGACCAGGTAATGGGGTAGTTACATTTATTGA
Found at i:47610463 original size:42 final size:43
Alignment explanation
Indices: 47610398--47610479 Score: 112
Period size: 42 Copynumber: 1.9 Consensus size: 43
47610388 TCTTCCATGT
* ** *
47610398 AATTCAATATCGATGCCTCTGTCCTAGACAGGGTCTTACACAA
1 AATTAAATATCGATGCCAATGTCCCAGACAGGGTCTTACACAA
*
47610441 AATTAAATAT-GATGCCAATGTCCCAGACATGGTCTTACA
1 AATTAAATATCGATGCCAATGTCCCAGACAGGGTCTTACA
47610480 TGTAAATCTC
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
42 25 0.74
43 9 0.26
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (43 bp):
AATTAAATATCGATGCCAATGTCCCAGACAGGGTCTTACACAA
Found at i:47621376 original size:65 final size:65
Alignment explanation
Indices: 47621272--47621401 Score: 260
Period size: 65 Copynumber: 2.0 Consensus size: 65
47621262 TACTTATTGC
47621272 AATTTAATGAATTATGTGTTTATAGTCTTTTATCATTTCATGAAAAAACTAGAATAAGGAAAGGA
1 AATTTAATGAATTATGTGTTTATAGTCTTTTATCATTTCATGAAAAAACTAGAATAAGGAAAGGA
47621337 AATTTAATGAATTATGTGTTTATAGTCTTTTATCATTTCATGAAAAAACTAGAATAAGGAAAGGA
1 AATTTAATGAATTATGTGTTTATAGTCTTTTATCATTTCATGAAAAAACTAGAATAAGGAAAGGA
47621402 GAGTTGTAGC
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.42, C:0.06, G:0.15, T:0.37
Consensus pattern (65 bp):
AATTTAATGAATTATGTGTTTATAGTCTTTTATCATTTCATGAAAAAACTAGAATAAGGAAAGGA
Found at i:47624022 original size:40 final size:40
Alignment explanation
Indices: 47623928--47624072 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
47623918 TACTCGAATG
* *
47623928 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
47623969 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * * *
47624009 ATATCCGGGCTAAGTCCCGAAGGCATTTATGTTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
47624049 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
47624073 CTTGTGCGAG
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 1 0.01
40 60 0.67
41 28 0.31
42 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:47630621 original size:9 final size:9
Alignment explanation
Indices: 47630609--47630634 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
47630599 ATTATTTTTT
47630609 AAAATATTA
1 AAAATATTA
47630618 AAAATATTA
1 AAAATATTA
47630627 AAAATATT
1 AAAATATT
47630635 TTTTTATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (9 bp):
AAAATATTA
Found at i:47630654 original size:19 final size:19
Alignment explanation
Indices: 47630629--47630677 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
47630619 AAATATTAAA
*
47630629 AATATTTTTTTATAATTTT
1 AATATTTTTTAATAATTTT
*
47630648 TATATTTTCTTAATAATTTT
1 AATATTTT-TTAATAATTTT
47630668 AATTATTTTT
1 AA-TATTTTT
47630678 AATTTTAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
19 7 0.28
20 12 0.48
21 6 0.24
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (19 bp):
AATATTTTTTAATAATTTT
Found at i:47630679 original size:19 final size:20
Alignment explanation
Indices: 47630630--47630680 Score: 63
Period size: 19 Copynumber: 2.6 Consensus size: 20
47630620 AATATTAAAA
47630630 ATATTTTTTT-ATAATTTTT
1 ATATTTTTTTAATAATTTTT
*
47630649 ATATTTTCTTAATAA-TTTT
1 ATATTTTTTTAATAATTTTT
47630668 A-ATTATTTTTAAT
1 ATATT-TTTTTAAT
47630681 TTTAAAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 3 0.11
19 21 0.75
20 4 0.14
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (20 bp):
ATATTTTTTTAATAATTTTT
Found at i:47630893 original size:16 final size:17
Alignment explanation
Indices: 47630852--47630893 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
47630842 AAAAAAATAC
47630852 AAATTAAAAGATTAAAT
1 AAATTAAAAGATTAAAT
**
47630869 AAACGAAAA-ATTAAAT
1 AAATTAAAAGATTAAAT
*
47630885 AGATTAAAA
1 AAATTAAAA
47630894 TAACTTTTTT
Statistics
Matches: 20, Mismatches: 5, Indels: 1
0.77 0.19 0.04
Matches are distributed among these distances:
16 13 0.65
17 7 0.35
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.24
Consensus pattern (17 bp):
AAATTAAAAGATTAAAT
Found at i:47632238 original size:10 final size:10
Alignment explanation
Indices: 47632223--47632247 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
47632213 AATAAAAATA
47632223 ATTATTTATT
1 ATTATTTATT
47632233 ATTATTTATT
1 ATTATTTATT
47632243 ATTAT
1 ATTAT
47632248 ATAAAATTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (10 bp):
ATTATTTATT
Found at i:47634164 original size:11 final size:11
Alignment explanation
Indices: 47634150--47634185 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
47634140 AATTATAATA
47634150 AAATATTTTTT
1 AAATATTTTTT
47634161 AAATATTTTTT
1 AAATATTTTTT
* *
47634172 TAAGATTTTTT
1 AAATATTTTTT
47634183 AAA
1 AAA
47634186 ATTAATTAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (11 bp):
AAATATTTTTT
Found at i:47636536 original size:46 final size:44
Alignment explanation
Indices: 47636483--47636653 Score: 139
Period size: 46 Copynumber: 3.7 Consensus size: 44
47636473 TCTTGTAGCC
*
47636483 GATGCATGTTCCAGACATGTCTTACACTAGCTTACGTCTCGAGGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGC-T-CGTCTCGAGGCT
* * * * *
47636529 GATGCATGTCTC-GAACATGTCTTACACCAACACTCGTCTCGATGCC
1 GATGCATGTCCCAG-ACATGTCTTACA-CTA-GCTCGTCTCGAGGCT
* * * **
47636575 GATGCCATGTCCCAGACATGGTTTTATACAAGCTC-TCATAATATGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCGTC-T-CGA-GGCT
47636623 GATGCATGTCCCAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
47636654 CTGCAATAAC
Statistics
Matches: 99, Mismatches: 17, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
45 3 0.03
46 50 0.51
47 32 0.32
48 14 0.14
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (44 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCGTCTCGAGGCT
Found at i:47653652 original size:40 final size:40
Alignment explanation
Indices: 47653608--47653786 Score: 256
Period size: 40 Copynumber: 4.5 Consensus size: 40
47653598 CACTCGAATA
*
47653608 CCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGA-ACTAGTAACTCGCACAAATG
*
47653648 CCTTCGGGACTTAGCCCGGAACTAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
47653688 CCTTCGGGACTTAGCCC-GAA-TATGGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAACTA--GTAACTCGCACAAATG
* * * *
47653728 CCTTCGGGACTTAGCCCAGAACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
47653768 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
47653787 TTATCATCCA
Statistics
Matches: 127, Mismatches: 7, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
38 2 0.02
39 4 0.03
40 116 0.91
41 3 0.02
42 2 0.02
ACGTcount: A:0.27, C:0.30, G:0.23, T:0.21
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
Found at i:47653703 original size:80 final size:80
Alignment explanation
Indices: 47653608--47653786 Score: 288
Period size: 80 Copynumber: 2.2 Consensus size: 80
47653598 CACTCGAATA
* *
47653608 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAGAACTAG
47653673 TAACTCA-CACAAATG
66 TAACT-AGCACAAATG
* *
47653688 CCTTCGGGACTTAGCCCGAATATGGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAGAACTAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAGAACTAG
* *
47653753 TCACTAGCGCAAATG
66 TAACTAGCACAAATG
47653768 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
47653787 TTATCATCCA
Statistics
Matches: 91, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
79 1 0.01
80 90 0.99
ACGTcount: A:0.27, C:0.30, G:0.23, T:0.21
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAGAACTAG
TAACTAGCACAAATG
Found at i:47660248 original size:29 final size:30
Alignment explanation
Indices: 47660201--47660268 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
47660191 TGGCCCAAGA
* *
47660201 GTAAATACTCAAAATTTGAAGGATTAA-AGT
1 GTAAATA-TCAAAAGTTGAAGGACTAATAGT
*
47660231 GTAAATATGAAAAGTTGAAGGACTAATAGT
1 GTAAATATCAAAAGTTGAAGGACTAATAGT
*
47660261 GCAAATAT
1 GTAAATAT
47660269 TTTAAGGGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.47, C:0.06, G:0.19, T:0.28
Consensus pattern (30 bp):
GTAAATATCAAAAGTTGAAGGACTAATAGT
Found at i:47660543 original size:8 final size:8
Alignment explanation
Indices: 47660530--47660554 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
47660520 TTTTAAATGA
47660530 TATTTTAT
1 TATTTTAT
47660538 TATTTTAT
1 TATTTTAT
47660546 TATTTTAT
1 TATTTTAT
47660554 T
1 T
47660555 TAATATATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:47662718 original size:46 final size:46
Alignment explanation
Indices: 47662665--47662844 Score: 236
Period size: 46 Copynumber: 3.9 Consensus size: 46
47662655 TGTGCTCTCT
* *
47662665 GATATGAAATGTGTAAGACCATGGTTGAAAGAAACCATGGCAGCCC
1 GATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCC
* *
47662711 GATATGAAATGTGTAAGACCATGGTTGAAAGATACCGTGGCAACCT
1 GATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCC
**
47662757 GATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAT
1 GATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCC
* ** * * *
47662803 GA-AAGAAAATAAGTAAGACCATAGTTGAAAGACACTATGGCA
1 GATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
47662845 TCATGTCAAA
Statistics
Matches: 121, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 2 0.02
46 119 0.98
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.21
Consensus pattern (46 bp):
GATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCC
Found at i:47680018 original size:35 final size:35
Alignment explanation
Indices: 47679972--47680042 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
47679962 ATTGGAGATA
47679972 GTGTGATGATGCTCCGACCGGTCTCCAACCTTTAC
1 GTGTGATGATGCTCCGACCGGTCTCCAACCTTTAC
*
47680007 GTGTGATGATGCTCTGACCGGTCTCCAACCTTTAC
1 GTGTGATGATGCTCCGACCGGTCTCCAACCTTTAC
47680042 G
1 G
47680043 AGGTTTCGAG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.17, C:0.30, G:0.24, T:0.30
Consensus pattern (35 bp):
GTGTGATGATGCTCCGACCGGTCTCCAACCTTTAC
Found at i:47691595 original size:41 final size:41
Alignment explanation
Indices: 47691468--47691653 Score: 243
Period size: 41 Copynumber: 4.6 Consensus size: 41
47691458 CTCGCACAAG
* * * * * *
47691468 GCCTTCGGGTCTTAACCCGGATATGGTCAC-TAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
* *
47691508 GCCTTCGGGACTTAGCCCGAATATAGTCGC-TAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
* * *
47691548 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAACACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGCTTAGCACAAAA
47691589 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
47691630 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
47691654 CATTCGAGTA
Statistics
Matches: 129, Mismatches: 14, Indels: 5
0.87 0.09 0.03
Matches are distributed among these distances:
39 3 0.02
40 57 0.44
41 66 0.51
42 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (41 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
Found at i:47713793 original size:24 final size:25
Alignment explanation
Indices: 47713751--47713799 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
47713741 ACACAAATGC
*
47713751 AGCTCTTCGTGAGCATCCTGATATG
1 AGCTCTTCATGAGCATCCTGATATG
*
47713776 AGCTCTT-ATGAGCTTCCTGATATG
1 AGCTCTTCATGAGCATCCTGATATG
47713800 GCTTGCTTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 15 0.68
25 7 0.32
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.35
Consensus pattern (25 bp):
AGCTCTTCATGAGCATCCTGATATG
Found at i:47714255 original size:16 final size:17
Alignment explanation
Indices: 47714236--47714268 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
47714226 ATGATGTTAT
47714236 ATGAAATAT-TGATATA
1 ATGAAATATATGATATA
*
47714252 ATGAAATGTATGATATA
1 ATGAAATATATGATATA
47714269 TGTTTATGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATATATGATATA
Found at i:47714267 original size:17 final size:17
Alignment explanation
Indices: 47714224--47714268 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 17
47714214 AAATTCATGA
*
47714224 AAATG-ATGTTAT-ATG
1 AAATGTATGATATAATG
*
47714239 AAATAT-TGATATAATG
1 AAATGTATGATATAATG
47714255 AAATGTATGATATA
1 AAATGTATGATATA
47714269 TGTTTATGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
15 9 0.38
16 8 0.33
17 7 0.29
ACGTcount: A:0.47, C:0.00, G:0.16, T:0.38
Consensus pattern (17 bp):
AAATGTATGATATAATG
Found at i:47721668 original size:40 final size:40
Alignment explanation
Indices: 47721613--47722255 Score: 1126
Period size: 40 Copynumber: 16.1 Consensus size: 40
47721603 GTGTGCATGA
*
47721613 GCATTTGTGCGAATTGATATATCCGGGTTAAGACCCGAAG
1 GCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAG
*
47721653 GCATTTGTGCGAATTGATATATCCGGGCTAAGACCTGAAG
1 GCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAG
47721693 GCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAG
1 GCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAG
*
47721733 GCATTTGTGCGAATTGATATATCCGGGTTAAGACCCGAAG
1 GCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAG
47721773 GCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAG
1 GCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAG
*
47721813 GCATTTGTGCGAATTGATATATCTGGGCTAAGACCCGAAG
1 GCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAG
47721853 GCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAG
1 GCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAG
*
47721893 GCATTTGTGCGAATTGATATATCCGGGATAAGACCCGAAG
1 GCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAG
*
47721933 GCATTTGTGCGAATTGATATATCCGGGATAAGACCCGAAG
1 GCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAG
47721973 GCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAG
1 GCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAG
*
47722013 GCATTTGTGCGAATTGATATATCCGGGATAAGACCCGAAG
1 GCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAG
*
47722053 GCATTTGTGCGAATTGATATATCCGGGATAAGACCCGAAG
1 GCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAG
*
47722093 GCATTTGTGCGAATTGATATATCCGGGATAAGACCCGAAG
1 GCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAG
* *
47722133 GCATTTGTGCGAACTGATATATCCGGGCTAAGACCCGACG
1 GCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAG
*
47722173 GCGTTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAG
1 GCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAG
* * * *
47722213 GCATTCGTGCGAGTTGCTAT-TCCCGGGTTAAGACCCGAAG
1 GCATTTGTGCGAATTGATATAT-CCGGGCTAAGACCCGAAG
47722253 GCA
1 GCA
47722256 ATTGAGCTTG
Statistics
Matches: 581, Mismatches: 21, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
39 1 0.00
40 580 1.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (40 bp):
GCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAG
Found at i:47724621 original size:40 final size:40
Alignment explanation
Indices: 47724304--47724607 Score: 431
Period size: 40 Copynumber: 7.7 Consensus size: 40
47724294 TTGAATGCTG
* * *
47724304 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
** * *
47724343 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
47724383 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
47724422 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
47724462 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
47724502 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
47724542 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
47724583 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
47724608 AACGAGGAGC
Statistics
Matches: 245, Mismatches: 13, Indels: 13
0.90 0.05 0.05
Matches are distributed among these distances:
39 52 0.21
40 183 0.75
41 10 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:47744503 original size:38 final size:39
Alignment explanation
Indices: 47744452--47744526 Score: 93
Period size: 40 Copynumber: 1.9 Consensus size: 39
47744442 AAATACAACC
* *
47744452 AATATTCATTTCAATTCAA-AT-AA-TCAATATATTCAAT
1 AATATTCAATTCAA-TCAATATAAATTCAATAAATTCAAT
47744489 AATATATCAATTCAATCAATATAAATTCAATAAATTCA
1 AATAT-TCAATTCAATCAATATAAATTCAATAAATTCA
47744527 TCACATACTA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
37 9 0.28
38 10 0.31
39 2 0.06
40 11 0.34
ACGTcount: A:0.49, C:0.13, G:0.00, T:0.37
Consensus pattern (39 bp):
AATATTCAATTCAATCAATATAAATTCAATAAATTCAAT
Found at i:47744525 original size:24 final size:25
Alignment explanation
Indices: 47744497--47744552 Score: 64
Period size: 24 Copynumber: 2.3 Consensus size: 25
47744487 ATAATATATC
47744497 AATTCAATCA-ATA-TAAATTCAATA
1 AATTCAATCACATACTAAA-TCAATA
*
47744521 AATTC-ATCACATACTAAATCAATC
1 AATTCAATCACATACTAAATCAATA
*
47744545 CATTCAAT
1 AATTCAAT
47744553 TGCAAAACAC
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 4 0.15
24 17 0.63
25 6 0.22
ACGTcount: A:0.48, C:0.20, G:0.00, T:0.32
Consensus pattern (25 bp):
AATTCAATCACATACTAAATCAATA
Found at i:47745245 original size:16 final size:16
Alignment explanation
Indices: 47745224--47745255 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
47745214 TTCTAATTCG
*
47745224 TTTTTTTTATGTTTTT
1 TTTTTTTTATCTTTTT
47745240 TTTTTTTTATCTTTTT
1 TTTTTTTTATCTTTTT
47745256 CTTATTTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.06, C:0.03, G:0.03, T:0.88
Consensus pattern (16 bp):
TTTTTTTTATCTTTTT
Found at i:47746885 original size:14 final size:14
Alignment explanation
Indices: 47746849--47746887 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
47746839 TTGTTTCACT
*
47746849 GAAAATGACTTCTA
1 GAAAATGATTTCTA
*
47746863 GAAAATGATTTCTG
1 GAAAATGATTTCTA
47746877 GAAAATGATTT
1 GAAAATGATTT
47746888 ACTTTTTTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.41, C:0.08, G:0.18, T:0.33
Consensus pattern (14 bp):
GAAAATGATTTCTA
Found at i:47748339 original size:30 final size:30
Alignment explanation
Indices: 47748303--47748361 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
47748293 GTAACCGAAG
47748303 CTAGTTTAAACCACACACTTAGTGCCAAAT
1 CTAGTTTAAACCACACACTTAGTGCCAAAT
* * *
47748333 CTAGTTTAAATCGCACACTTGGTGCCAAA
1 CTAGTTTAAACCACACACTTAGTGCCAAA
47748362 ACTTCCGATT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.27
Consensus pattern (30 bp):
CTAGTTTAAACCACACACTTAGTGCCAAAT
Found at i:47749913 original size:16 final size:16
Alignment explanation
Indices: 47749882--47749918 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
47749872 ATGTGAATAA
47749882 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
47749898 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
47749914 TATTA
1 TATTA
47749919 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:47752286 original size:85 final size:85
Alignment explanation
Indices: 47752143--47752321 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
47752133 GGCCGGCCAT
47752143 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
47752208 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
47752228 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
47752293 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
47752313 GGGCATGGG
1 GAGCATGGG
47752322 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:47753644 original size:49 final size:48
Alignment explanation
Indices: 47753566--47754019 Score: 610
Period size: 49 Copynumber: 9.6 Consensus size: 48
47753556 TATCTGAATA
* *
47753566 AATGTGAAATTG-TATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
47753613 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGT-TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
47753662 AATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
47753709 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGT-TATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
47753758 AATGTGAAAGTG-TATATATGTGATAAGGTCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTTATATATGTGATAAGGCCGAATGGCCAATGTGATG
47753805 AATGTGAAAGTGTATATATATGTGATAA-GCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGT-TATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
47753853 AATGTGAACA-TG-T-TATGTGTGATAAGG-CGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
47753898 AATGTGAACA-TG-CATATATGAGATAA-GCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
47753944 AATGTGAACA-TGTGTATATATGTGATAAGGCCGAATGACCAATGTGATG
1 AATGTGAA-AGTGT-TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
47753993 GATGTGGAAGTG-TATAAATGTGATAAG
1 AATGTGAAAGTGTTATATATGTGATAAG
47754020 TCCCGAAGGG
Statistics
Matches: 377, Mismatches: 16, Indels: 28
0.90 0.04 0.07
Matches are distributed among these distances:
45 42 0.11
46 42 0.11
47 116 0.31
48 42 0.11
49 135 0.36
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.29
Consensus pattern (48 bp):
AATGTGAAAGTGTTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:47753676 original size:96 final size:96
Alignment explanation
Indices: 47753566--47754019 Score: 667
Period size: 96 Copynumber: 4.8 Consensus size: 96
47753556 TATCTGAATA
* *
47753566 AATGTGAAATTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* *
47753631 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
* *
47753662 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* *
47753727 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
*
47753758 AATGTGAAAGTGTATATATGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
47753823 TATGTGATAA-GCCGAATGGCCAATGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
* *
47753853 AATGTGAACA-TGT-TATGTGTGATAAGG-CGAATGGCCAATGTGATGAATGTGAACA-TG--CA
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATA
*
47753912 TATATGAGATAA-GCCGAATGGCCAATGTGATG
64 TATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
47753944 AATGTGAACATGTGTATATATGTGATAAGGCCGAATGACCAATGTGATGGATGTGGAAGTGTATA
1 AATGTGAA-A-GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
47754009 -A-ATGTGATAAG
64 TATATGTGATAAG
47754020 TCCCGAAGGG
Statistics
Matches: 332, Mismatches: 16, Indels: 20
0.90 0.04 0.05
Matches are distributed among these distances:
91 42 0.13
93 31 0.09
94 28 0.08
95 62 0.19
96 168 0.51
97 1 0.00
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.29
Consensus pattern (96 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:47756512 original size:38 final size:38
Alignment explanation
Indices: 47756448--47756522 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
47756438 AATCCGAGTT
*
47756448 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
47756486 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
47756523 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:47756638 original size:40 final size:40
Alignment explanation
Indices: 47756583--47757016 Score: 679
Period size: 40 Copynumber: 10.8 Consensus size: 40
47756573 GACGATGATT
47756583 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
47756623 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
* *
47756663 CGGGCTAAGTTCCGAAGATCATTCATGCTAGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
**
47756703 CGGGCTAAGTTTCGAAGAGCATTCATGCTAGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
*
47756743 CGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
* *
47756783 CGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
47756823 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
47756863 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
* * *
47756903 CGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
* ** * * * *
47756943 CGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
** * *
47756983 CGGGCTGGGTCCCGAAGAGCAATCATGCTGGTGA
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
47757017 CGTGTATTCG
Statistics
Matches: 369, Mismatches: 25, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 369 1.00
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
Found at i:47758415 original size:85 final size:85
Alignment explanation
Indices: 47758272--47758450 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
47758262 GGCTGGCCAT
47758272 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
47758337 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
47758357 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
47758422 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
47758442 GGGCATGGG
1 GAGCATGGG
47758451 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:47759772 original size:47 final size:47
Alignment explanation
Indices: 47759718--47760267 Score: 811
Period size: 47 Copynumber: 11.6 Consensus size: 47
47759708 TATCTGAATA
*
47759718 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
47759765 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
47759814 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
47759861 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
47759910 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
47759957 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
47760006 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
47760053 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
47760100 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
47760147 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
47760194 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGACCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
47760241 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
47760268 TCCCGAAGGG
Statistics
Matches: 476, Mismatches: 19, Indels: 16
0.93 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 336 0.71
49 138 0.29
50 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:47759826 original size:96 final size:96
Alignment explanation
Indices: 47759718--47760267 Score: 832
Period size: 96 Copynumber: 5.8 Consensus size: 96
47759708 TATCTGAATA
*
47759718 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* *
47759783 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
* *
47759814 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* *
47759879 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
47759910 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
47759975 TATGTGATAAGGCCGAATGGCCAATGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
47760006 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG--TG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATA
*
47760067 TATGTGTGATAAGGCCGAATGGCCAATGTGATG
64 TATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
47760100 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG--CA
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATA
*
47760161 TATATGAGATAAGGCCGAATGGCCAATGTGATG
64 TATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
47760194 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGACCAATGTGATGGATGTGGAAGTGTATA-A
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
47760258 -ATGTGATAAG
66 TATGTGATAAG
47760268 TCCCGAAGGG
Statistics
Matches: 424, Mismatches: 24, Indels: 14
0.92 0.05 0.03
Matches are distributed among these distances:
93 2 0.00
94 178 0.42
95 1 0.00
96 241 0.57
97 2 0.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (96 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:47765327 original size:43 final size:43
Alignment explanation
Indices: 47765274--47765442 Score: 191
Period size: 43 Copynumber: 4.0 Consensus size: 43
47765264 GTTATCGAGA
* * *
47765274 TGTGAATACGTGTAAGACCATCTCTGGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
* *
47765317 TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
* * * *
47765360 TATGATTTCATGTAAGACCCTGTCTGGGACAGTGGC-TTCG-AT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATT-GTAT
* * *
47765402 ATGTGATAACATGTAAGACCATATCTGGGA-TTTGGCATTGT
1 -TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGT
47765443 GTGAGCTTAT
Statistics
Matches: 106, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
42 8 0.08
43 98 0.92
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
Found at i:47768932 original size:21 final size:21
Alignment explanation
Indices: 47768908--47768948 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
47768898 CAGGGCACAA
* *
47768908 GCCCGTGTGGAAGGGTAGCAG
1 GCCCGTATGGAAGAGTAGCAG
*
47768929 GCCCGTATGGGAGAGTAGCA
1 GCCCGTATGGAAGAGTAGCA
47768949 CACACGTACC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.22, C:0.20, G:0.44, T:0.15
Consensus pattern (21 bp):
GCCCGTATGGAAGAGTAGCAG
Found at i:47776247 original size:21 final size:21
Alignment explanation
Indices: 47776223--47776265 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
47776213 AGGGCACACT
*
47776223 CCGTGTAGAAGGGTAACACGC
1 CCGTGTAGAAGGATAACACGC
* *
47776244 CCGTGTGGGAGGATAACACGC
1 CCGTGTAGAAGGATAACACGC
47776265 C
1 C
47776266 TGTGCCCCAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.26, C:0.26, G:0.35, T:0.14
Consensus pattern (21 bp):
CCGTGTAGAAGGATAACACGC
Found at i:47778108 original size:39 final size:39
Alignment explanation
Indices: 47778034--47778214 Score: 208
Period size: 39 Copynumber: 4.6 Consensus size: 39
47778024 GCTACTCGTT
*
47778034 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATT-TAGTAACTCGCA
*
47778074 CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
47778113 CCAATGCCTTCGGGCTTAGCCC-GAATTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
47778151 CAAATGCCTTCGGATCTTAG-TCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
47778191 CAAA-GCCTTCGGACTTAGCCCGGA
1 CAAATGCCTTCGGACTTAGCCCGGA
47778215 CATCATTCGA
Statistics
Matches: 121, Mismatches: 15, Indels: 11
0.82 0.10 0.07
Matches are distributed among these distances:
38 33 0.27
39 67 0.55
40 21 0.17
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:47778176 original size:77 final size:78
Alignment explanation
Indices: 47778036--47778212 Score: 207
Period size: 77 Copynumber: 2.3 Consensus size: 78
47778026 TACTCGTTCA
* ** *
47778036 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGATT
1 AATGCCTTCGGG-CTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGATA
*
47778101 TAGTAAC-TCGCACC
65 TAGTAACTTAGCA-C
**
47778115 AATGCCTTCGGGCTTAGCCCGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTT-AGTCGGATA
1 AATGCCTTCGGGCTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGA-CTTAACCCGGATA
* *
47778178 TGGTCACTTAGCAC
65 TAGTAACTTAGCAC
* *
47778192 AAAGCCTTCGGACTTAGCCCG
1 AATGCCTTCGGGCTTAGCCCG
47778213 GACATCATTC
Statistics
Matches: 85, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
77 57 0.67
78 16 0.19
79 12 0.14
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (78 bp):
AATGCCTTCGGGCTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGATAT
AGTAACTTAGCAC
Found at i:47785927 original size:38 final size:39
Alignment explanation
Indices: 47785805--47785985 Score: 158
Period size: 38 Copynumber: 4.6 Consensus size: 39
47785795 GCTACTCGTT
* *
47785805 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAG-CCGGAATATAGTAACTCGCA
* * *
47785845 CAAATGCCTTCGGACTTAACCCGG-ATTTAGTAACT-GCA
1 CAAATGCCTTCGGGCTT-AGCCGGAATATAGTAACTCGCA
* *
47785883 CCAATGCCTTCGGGCTTAGCCGGAAT-TAGTAGCTCGCA
1 CAAATGCCTTCGGGCTTAGCCGGAATATAGTAACTCGCA
* * * *
47785921 CAAATGCCTTCGGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGG-GCTTAG-CCGGAATATAGTAAC-TCGCA
47785962 CAAA-GCCTTCGGGACTTAGCCGGA
1 CAAATGCCTTCGGG-CTTAGCCGGA
47785986 CATCATTCTC
Statistics
Matches: 116, Mismatches: 16, Indels: 18
0.77 0.11 0.12
Matches are distributed among these distances:
37 12 0.10
38 35 0.30
39 26 0.22
40 35 0.30
41 8 0.07
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCGGAATATAGTAACTCGCA
Found at i:47788367 original size:47 final size:46
Alignment explanation
Indices: 47788292--47788468 Score: 155
Period size: 47 Copynumber: 3.8 Consensus size: 46
47788282 GGTTAAGTGC
* * *
47788292 CGATGCCAAGTCCCAGACATGGTTTTACACTGGCTCATAGCTCAAGT
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATA-CTCAAGT
* * * *
47788339 TGATGCCATGTCCCAAACATGGTCTTACACTGACT-ATCATCTCTTAGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCAT-A-CTC-AAGT
* *
47788387 CGAT-ACATGTCCCAAACAT-GTCTTACACTAGCCCTCAT-CTCAATGT
1 CGATGCCATGTCCCAAACATGGTCTTACACT-G-GCTCATACTCAA-GT
* * *
47788433 CGATGCCATGTCCCAGACGTGGTCTTAGACTGGCTC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTC
47788469 TCATAATGGG
Statistics
Matches: 104, Mismatches: 18, Indels: 17
0.75 0.13 0.12
Matches are distributed among these distances:
45 1 0.01
46 23 0.22
47 62 0.60
48 16 0.15
49 2 0.02
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (46 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATACTCAAGT
Found at i:47788456 original size:94 final size:93
Alignment explanation
Indices: 47788332--47788512 Score: 229
Period size: 94 Copynumber: 1.9 Consensus size: 93
47788322 TGGCTCATAG
* * **
47788332 CTCAAGTTGATGCCATGTCCCAAACATGGTCTTACACTGACTATCAT-CTCTTAGCCGATACATG
1 CTCAAGTCGATGCCATGTCCCAAACATGGTCTTACACTGACTATCATAAT-GGAGCCGATACATG
47788396 TCCCAAACATGTCTTACACTAGCCCTCAT
65 TCCCAAACATGTCTTACACTAGCCCTCAT
* * * * * * *
47788425 CTCAATGTCGATGCCATGTCCCAGACGTGGTCTTAGACTGGCTCTCATAATGGGGCCGATGCATG
1 CTCAA-GTCGATGCCATGTCCCAAACATGGTCTTACACTGACTATCATAATGGAGCCGATACATG
*
47788490 TCCCAGACATGTCTTACACTAGC
65 TCCCAAACATGTCTTACACTAGC
47788513 TCACACAAGT
Statistics
Matches: 74, Mismatches: 12, Indels: 3
0.83 0.13 0.03
Matches are distributed among these distances:
93 5 0.07
94 68 0.92
95 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (93 bp):
CTCAAGTCGATGCCATGTCCCAAACATGGTCTTACACTGACTATCATAATGGAGCCGATACATGT
CCCAAACATGTCTTACACTAGCCCTCAT
Found at i:47794574 original size:17 final size:17
Alignment explanation
Indices: 47794537--47794579 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
47794527 TTAAAATAAA
* * *
47794537 AAAATGTAAAATATTTG
1 AAAATGTAAAAAAGTTC
47794554 AAAATGTAAAAAAGTTC
1 AAAATGTAAAAAAGTTC
47794571 AAAAT-TAAA
1 AAAATGTAAA
47794580 TGTTGTTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
16 4 0.17
17 19 0.83
ACGTcount: A:0.60, C:0.02, G:0.09, T:0.28
Consensus pattern (17 bp):
AAAATGTAAAAAAGTTC
Found at i:47796224 original size:17 final size:17
Alignment explanation
Indices: 47796202--47796239 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
47796192 CTTTTGATTG
47796202 TGATTTCTACGTTTTTA
1 TGATTTCTACGTTTTTA
*
47796219 TGATTTCTACGTTTTTG
1 TGATTTCTACGTTTTTA
47796236 TGAT
1 TGAT
47796240 CGGTGCTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.16, C:0.11, G:0.16, T:0.58
Consensus pattern (17 bp):
TGATTTCTACGTTTTTA
Found at i:47797016 original size:44 final size:43
Alignment explanation
Indices: 47796949--47797108 Score: 112
Period size: 43 Copynumber: 3.7 Consensus size: 43
47796939 CTGATATATA
* * *
47796949 ATTTCGTGTACGACCACGTCTGGGATGTTGGCATCGAT-TTGAG
1 ATTTCGTGTAAGATCATGTCTGGGATGTTGGCATCGATGTT-AG
** * *
47796992 ATTTACGTGTAAGATCATGTCTGGGACATCGGCATCG-TGTTTG
1 ATTT-CGTGTAAGATCATGTCTGGGATGTTGGCATCGATGTTAG
* * *
47797035 ATTTCGTGTAAGACTC-TGTCTAGGATAG-TGGCATCGATATTTG
1 ATTTCGTGTAAGA-TCATGTCTGGGAT-GTTGGCATCGATGTTAG
* * * * * *
47797078 ATTACATGTAAGACCAAGTTTGGGACGTTGG
1 ATTTCGTGTAAGATCATGTCTGGGATGTTGG
47797109 TATTGTACGA
Statistics
Matches: 91, Mismatches: 19, Indels: 14
0.73 0.15 0.11
Matches are distributed among these distances:
42 26 0.29
43 37 0.41
44 28 0.31
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.34
Consensus pattern (43 bp):
ATTTCGTGTAAGATCATGTCTGGGATGTTGGCATCGATGTTAG
Found at i:47799754 original size:46 final size:48
Alignment explanation
Indices: 47799576--47799891 Score: 489
Period size: 48 Copynumber: 6.7 Consensus size: 48
47799566 GAATATGTAT
* *
47799576 ATATGTATATGT-GTAAAGCCGAATGGCAAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
47799623 ATATGTATATGTGGTAAAGCCGAATGGCAAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
47799671 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAACTATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
47799719 ATATGTATACGT-GT-AAGCCGAATGGCTAGTGTGAACTATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
47799765 ATATGTATACGTGGT-AAG-CGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * * *
47799811 ATATGTATACGTGGTAAAGTCGAATGGCTAATGCGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
47799859 ATATGTATATGTGGTAAAGCCGAATGGCTAGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTG
47799892 ATTCGGCTAG
Statistics
Matches: 255, Mismatches: 10, Indels: 7
0.94 0.04 0.03
Matches are distributed among these distances:
46 86 0.34
47 22 0.09
48 147 0.58
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:47800109 original size:37 final size:37
Alignment explanation
Indices: 47800059--47800161 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
47800049 GGAAATGTAT
47800059 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
47800096 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
47800133 TCCAGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
47800162 CGACTATTCG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:47801480 original size:40 final size:40
Alignment explanation
Indices: 47801425--47801558 Score: 252
Period size: 40 Copynumber: 3.4 Consensus size: 40
47801415 ATTGAGAGTT
47801425 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
47801465 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
47801505 ATATATCCGGGCTAAGT-CCAAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
47801544 ATATATCCGGGCTAA
1 ATATATCCGGGCTAA
47801559 ACCTCAAAGG
Statistics
Matches: 93, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
39 36 0.39
40 57 0.61
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
Found at i:47801540 original size:39 final size:40
Alignment explanation
Indices: 47801425--47801578 Score: 251
Period size: 40 Copynumber: 3.9 Consensus size: 40
47801415 ATTGAGAGTT
*
47801425 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCAAAGAGCATTCGTGCTAGTG
*
47801465 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCAAAGAGCATTCGTGCTAGTG
47801505 ATATATCCGGGCTAAGT-CCAAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCAAAGAGCATTCGTGCTAGTG
*
47801544 ATATATCCGGGCTAA-ACCTCAAAG-GCATTCGTGCT
1 ATATATCCGGGCTAAGTCC-CAAAGAGCATTCGTGCT
47801579 GGAATTATGA
Statistics
Matches: 110, Mismatches: 2, Indels: 5
0.94 0.02 0.04
Matches are distributed among these distances:
39 48 0.44
40 62 0.56
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTCCCAAAGAGCATTCGTGCTAGTG
Found at i:47801622 original size:28 final size:28
Alignment explanation
Indices: 47801590--47801658 Score: 120
Period size: 28 Copynumber: 2.5 Consensus size: 28
47801580 GAATTATGAG
*
47801590 GCACTGTGTGTGCAAGTTCTTCAATCGA
1 GCACTATGTGTGCAAGTTCTTCAATCGA
47801618 GCACTATGTGTGCAAGTTCTTCAATCGA
1 GCACTATGTGTGCAAGTTCTTCAATCGA
*
47801646 GCGCTATGTGTGC
1 GCACTATGTGTGC
47801659 GAAATCAGTC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.20, C:0.22, G:0.26, T:0.32
Consensus pattern (28 bp):
GCACTATGTGTGCAAGTTCTTCAATCGA
Found at i:47805236 original size:48 final size:48
Alignment explanation
Indices: 47805178--47805538 Score: 587
Period size: 48 Copynumber: 7.5 Consensus size: 48
47805168 AAGATAAATA
* * *
47805178 TATATGTGGTAAAGCCGAATGGCAAATGTGAAATATATATAAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
47805226 TATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATTAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
47805274 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
**
47805322 TATATGTGGTAAAGCCGAATGGAAAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
47805370 TATATGTGGTAAAGTCGAATGGCTAGTGTGAACTATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
47805418 TATACGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
47805466 TATACGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
47805514 TATATGTGGTAAAGCCGAATGGCTA
1 TATATGTGGTAAAGCCGAATGGCTA
47805539 GTGATTCAGC
Statistics
Matches: 294, Mismatches: 19, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 294 1.00
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:47805763 original size:37 final size:37
Alignment explanation
Indices: 47805713--47805812 Score: 173
Period size: 37 Copynumber: 2.7 Consensus size: 37
47805703 AATGTATTCT
47805713 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
*
47805750 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
* *
47805787 AGGTAAGACCCGATAACTACGTGTGG
1 GGGTAAGACCCGATGACTACGTGTGG
47805813 CGACTATTCG
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.24
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
Found at i:47813011 original size:52 final size:52
Alignment explanation
Indices: 47812954--47813057 Score: 181
Period size: 52 Copynumber: 2.0 Consensus size: 52
47812944 CCAATCAAAA
47812954 GATAGTCTTTTGCAAGTAGAAGTCAATTATATCTTTGATTCCTTTTCACCTT
1 GATAGTCTTTTGCAAGTAGAAGTCAATTATATCTTTGATTCCTTTTCACCTT
* * *
47813006 GATAGTCTTTTGCGAGTGGCAGTCAATTATATCTTTGATTCCTTTTCACCTT
1 GATAGTCTTTTGCAAGTAGAAGTCAATTATATCTTTGATTCCTTTTCACCTT
47813058 TTCCATCAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.22, C:0.18, G:0.15, T:0.44
Consensus pattern (52 bp):
GATAGTCTTTTGCAAGTAGAAGTCAATTATATCTTTGATTCCTTTTCACCTT
Found at i:47813211 original size:6 final size:6
Alignment explanation
Indices: 47813202--47813230 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
47813192 GATTAATTAT
47813202 AATTTG AATTTG AATTTG AATTTG AATTT
1 AATTTG AATTTG AATTTG AATTTG AATTT
47813231 CTTCAAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (6 bp):
AATTTG
Found at i:47813318 original size:23 final size:21
Alignment explanation
Indices: 47813292--47813333 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
47813282 AGATTAAGTG
47813292 AATTTAGACATATATATATTTAT
1 AATTTAGACAT-TATA-ATTTAT
*
47813315 AATTTATACATTATAATTT
1 AATTTAGACATTATAATTT
47813334 TTTATTTCCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 4 0.22
23 10 0.56
ACGTcount: A:0.43, C:0.05, G:0.02, T:0.50
Consensus pattern (21 bp):
AATTTAGACATTATAATTTAT
Found at i:47813346 original size:22 final size:23
Alignment explanation
Indices: 47813321--47813364 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
47813311 TTATAATTTA
*
47813321 TACATTATAATT-TTTTATTTCC
1 TACATAATAATTATTTTATTTCC
47813343 TACATAATAATTAATTTTATTT
1 TACATAATAATT-ATTTTATTT
47813365 TATGATTTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 11 0.58
24 8 0.42
ACGTcount: A:0.34, C:0.09, G:0.00, T:0.57
Consensus pattern (23 bp):
TACATAATAATTATTTTATTTCC
Found at i:47817438 original size:46 final size:48
Alignment explanation
Indices: 47817352--47817571 Score: 183
Period size: 46 Copynumber: 4.7 Consensus size: 48
47817342 AGGGCATAAT
* *
47817352 GCCGATGCCATGTCCTAGACATGGTCTTACACT-G-AC-ACATCTCGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTACATCTCGTAG
*
47817398 GCCGATGCATGTCCCATACATGTCTTACACTGGCT-TACATCTCG-AG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTACATCTCGTAG
* * ** * *
47817444 GCCGATGCATGTCTCAGACATGTCTTACACTAGCTCT-TGTCTC-AAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTACATCTCGTAG
* **
47817490 GCCGATGCCATGTCCCAGATATGGTCTTACACTGGCTCTA-A--TAATATG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTACATCTCGTA-G
* * *
47817538 GCTGATGCATGTTCCAAACATGTCTTACACTGGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC
47817572 ACACAAATAA
Statistics
Matches: 143, Mismatches: 20, Indels: 22
0.77 0.11 0.12
Matches are distributed among these distances:
44 10 0.07
45 14 0.10
46 73 0.51
47 25 0.17
48 21 0.15
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (48 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTACATCTCGTAG
Found at i:47817545 original size:94 final size:91
Alignment explanation
Indices: 47817398--47817568 Score: 213
Period size: 94 Copynumber: 1.8 Consensus size: 91
47817388 ACATCTCGTA
* * *
47817398 GCCGATGCATGTCCCATACATGTCTTACACTGGCTTACATCTCGAGGCCGATGCATG-TCTCAGA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATATC-AGGCCGATGCATGTTC-CAAA
47817462 CATGTCTTACACTAGCTCTTGTCTCAAT
64 CATGTCTTACACTAGCTCTTGTCTCAAT
* *
47817490 GCCGATGCCATGTCCCAGATATGGTCTTACACTGGCTCTA-ATAAT-ATGGCTGATGCATGTTCC
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACAT-ATCA-GGCCGATGCATGTTCC
47817553 AAACATGTCTTACACT
61 AAACATGTCTTACACT
47817569 GGCACACAAA
Statistics
Matches: 68, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
92 7 0.10
93 13 0.19
94 43 0.63
95 5 0.07
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.30
Consensus pattern (91 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATATCAGGCCGATGCATGTTCCAAACA
TGTCTTACACTAGCTCTTGTCTCAAT
Found at i:47819237 original size:25 final size:24
Alignment explanation
Indices: 47819203--47819255 Score: 79
Period size: 25 Copynumber: 2.2 Consensus size: 24
47819193 AAGTTCAAGC
*
47819203 GAGCCATATCATGAAGCTCATAAA
1 GAGCCATATCAGGAAGCTCATAAA
*
47819227 GAGCCTATATCAGGACGCTCATAAA
1 GAGCC-ATATCAGGAAGCTCATAAA
47819252 GAGC
1 GAGC
47819256 TACATTTGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 5 0.19
25 21 0.81
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.19
Consensus pattern (24 bp):
GAGCCATATCAGGAAGCTCATAAA
Found at i:47824510 original size:40 final size:40
Alignment explanation
Indices: 47824457--47824720 Score: 417
Period size: 40 Copynumber: 6.6 Consensus size: 40
47824447 ACTACTTGCT
*
47824457 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
47824497 CAAATGCCTTCGGGTCTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
47824537 CAAATGCCTTCGGGTCTTAGCCCGGATATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
47824577 CAAATGCCTTCAGGACTTAGCCCGG-TATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
47824616 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
47824656 CAAATGCCTTC-GGAGCTTAGCCC-GAAATTAGTCACTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATA-TAGTAACTCGCA
47824696 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
47824721 TTATCATCCA
Statistics
Matches: 209, Mismatches: 10, Indels: 9
0.92 0.04 0.04
Matches are distributed among these distances:
39 43 0.21
40 162 0.78
41 4 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:47824636 original size:119 final size:119
Alignment explanation
Indices: 47824450--47824721 Score: 449
Period size: 119 Copynumber: 2.3 Consensus size: 119
47824440 GAATATAACT
* *
47824450 ACTTGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGTCTT
1 ACTTGCACAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTT
*
47824515 AGCCCGGATATAGTAACTCGCACAAATGCCTTCGG-GTCTTAGCCCG-GATATAGTA
65 AGCCCGGATATAGTAACTCGCACAAATGCCTTCGGAG-CTTAGCCCGAAAT-TAGTA
*
47824570 ACTTGCACAAATGCCTTCAGGACTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTA
1 ACTTGCACAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTA
*
47824635 GCCCGGATATAGTAACTCGCACAAATGCCTTCGGAGCTTAGCCCGAAATTAGTC
66 GCCCGGATATAGTAACTCGCACAAATGCCTTCGGAGCTTAGCCCGAAATTAGTA
*
47824689 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGT
1 ACTTGCACAAATGCCTTCGGGACTTAGCCCGGT
47824722 TATCATCCAA
Statistics
Matches: 143, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
119 110 0.77
120 33 0.23
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (119 bp):
ACTTGCACAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTA
GCCCGGATATAGTAACTCGCACAAATGCCTTCGGAGCTTAGCCCGAAATTAGTA
Found at i:47832636 original size:39 final size:40
Alignment explanation
Indices: 47832521--47832776 Score: 355
Period size: 39 Copynumber: 6.5 Consensus size: 40
47832511 ACTACTTGCT
* *
47832521 CAAATGCCTTTGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
47832561 CAAATGCCTTCGGGTCTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
47832601 CAAATGCCTTTGGGTCTTAG-CCGGATATAGTAACTCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
47832640 CAAATGCCTTCGGGACTTAGCCCTG-TATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
47832679 CAAATGCCTTCGGGACTTAGCCCGGATATAGT-ACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * * *
47832718 C-AATG-CTTCGAG-CTTAGCCCAGA-ATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
47832755 CAAATGCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
47832777 TGGTTATCAT
Statistics
Matches: 195, Mismatches: 14, Indels: 14
0.87 0.06 0.06
Matches are distributed among these distances:
35 1 0.01
36 14 0.07
37 13 0.07
38 8 0.04
39 87 0.45
40 72 0.37
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:47832643 original size:79 final size:79
Alignment explanation
Indices: 47832521--47832776 Score: 353
Period size: 79 Copynumber: 3.3 Consensus size: 79
47832511 ACTACTTGCT
* * *
47832521 CAAATGCCTTTGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGTCTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCAG
47832586 ATATAGTAACTCGCA
65 ATATAGTAACTCGCA
* * * *
47832601 CAAATGCCTTTGGGTCTTAG-CCGGATATAGTAACTCGGACAAATGCCTTCGGGACTTAGCCCTG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCAG
47832665 -TATAGTAACTCGCA
65 ATATAGTAACTCGCA
*
47832679 CAAATGCCTTCGGGACTTAGCCCGGATATAGT-ACTCGCAC-AATG-CTTCGAGCTTAGCCCAGA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCAGA
* *
47832741 -ATTAGTCACTAGCA
66 TA-TAGTAACTCGCA
47832755 CAAATGCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
47832777 TGGTTATCAT
Statistics
Matches: 161, Mismatches: 12, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
75 10 0.06
76 38 0.24
77 4 0.02
78 39 0.24
79 51 0.32
80 19 0.12
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCAGA
TATAGTAACTCGCA
Found at i:47832756 original size:37 final size:39
Alignment explanation
Indices: 47832489--47832776 Score: 304
Period size: 39 Copynumber: 7.4 Consensus size: 39
47832479 ACCCAAGCAT
* * * *
47832489 CTTCGGGATTTAG-CCGAATATAACTACTTGCTCAAATGC
1 CTTCGGGACTTAGCCCGAATAT-AGTACTCGCACAAATGC
* **
47832528 CTTTGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGAATATAGT-ACTCGCACAAATGC
* *
47832568 CTTCGGGTCTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGAATATAGT-ACTCGCACAAATGC
* * * *
47832608 CTTTGGGTCTTAG-CCGGATATAGTAACTCGGACAAATGC
1 CTTCGGGACTTAGCCCGAATATAGT-ACTCGCACAAATGC
47832647 CTTCGGGACTTAGCCCTG--TATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCC-GAATATAGT-ACTCGCACAAATGC
*
47832686 CTTCGGGACTTAGCCCGGATATAGTACTCGCAC-AATG-
1 CTTCGGGACTTAGCCCGAATATAGTACTCGCACAAATGC
* *
47832723 CTTCGAG-CTTAGCCCAGAAT-TAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCC-GAATATAGT-ACTCGCACAAATGC
47832762 CTTCGGGACTTAGCC
1 CTTCGGGACTTAGCC
47832777 TGGTTATCAT
Statistics
Matches: 219, Mismatches: 19, Indels: 21
0.85 0.07 0.08
Matches are distributed among these distances:
36 12 0.05
37 16 0.07
38 9 0.04
39 99 0.45
40 82 0.37
41 1 0.00
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CTTCGGGACTTAGCCCGAATATAGTACTCGCACAAATGC
Found at i:47848931 original size:31 final size:31
Alignment explanation
Indices: 47848893--47848971 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
47848883 TTTAACGGTT
47848893 ACTGGGCCGAAGCCTTTTCATAAATCAAATC
1 ACTGGGCCGAAGCCTTTTCATAAATCAAATC
*
47848924 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCAAATC
*
47848955 ACTGGGTCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
47848972 ATTATAAACG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCAAATC
Found at i:47849250 original size:26 final size:26
Alignment explanation
Indices: 47849198--47849397 Score: 291
Period size: 26 Copynumber: 7.8 Consensus size: 26
47849188 CCTCTTTAAT
47849198 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
* **
47849223 AACTGGGGCA-AAGCCTTTTTTCAATA
1 AACTGGGGCATAAGCC-CTTTTCGGTA
47849249 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
47849275 AACT-GGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
* **
47849300 AACTAGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
47849326 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
**
47849352 AACTGGGG-ATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
47849377 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
47849398 GCACTTCCTC
Statistics
Matches: 158, Mismatches: 13, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
25 63 0.40
26 90 0.57
27 5 0.03
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:47849253 original size:51 final size:52
Alignment explanation
Indices: 47849198--47849397 Score: 291
Period size: 51 Copynumber: 3.9 Consensus size: 52
47849188 CCTCTTTAAT
** * **
47849198 AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCA-AAGCCTTTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCC-CTTTTCGGTA
**
47849249 AACTGGGGCATAAGCCCTTTTCGGTAAACT-GGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTA
*
47849300 AACTAGGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTA
47849352 AACTGGGG-ATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
47849398 GCACTTCCTC
Statistics
Matches: 139, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
51 87 0.63
52 52 0.37
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (52 bp):
AACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTA
Found at i:47849289 original size:77 final size:77
Alignment explanation
Indices: 47849198--47849397 Score: 314
Period size: 77 Copynumber: 2.6 Consensus size: 77
47849188 CCTCTTTAAT
47849198 AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCA-AAGCCTTTTTTCAATAAACTGGGGCATA
1 AACT-GGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCC-TTTTTCAATAAACTGGGGCATA
47849261 AGCCCTTTTCGGTA
64 AGCCCTTTTCGGTA
* *
47849275 AACTGGGCATAAGCCCTTTTCGGTAAACTAGGGCATAAGCCCTTTTCAATAAACTGGGGCATAAG
1 AACTGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCTTTTTCAATAAACTGGGGCATAAG
47849340 CCCTTTTCGGTA
66 CCCTTTTCGGTA
* ** *
47849352 AACTGGGGATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
1 AACTGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCTTTTT
47849398 GCACTTCCTC
Statistics
Matches: 115, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
76 5 0.04
77 105 0.91
78 5 0.04
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (77 bp):
AACTGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCTTTTTCAATAAACTGGGGCATAAG
CCCTTTTCGGTA
Found at i:47849472 original size:20 final size:20
Alignment explanation
Indices: 47849447--47849521 Score: 102
Period size: 20 Copynumber: 3.9 Consensus size: 20
47849437 TTATGAATTC
*
47849447 ATCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
47849467 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
47849487 ATCATGAGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
47849507 ATCATGT--ATATCATA
1 ATCATGTGCATATCATA
47849522 TCCCGCGTAT
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
18 8 0.16
20 41 0.80
21 2 0.04
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:47850271 original size:27 final size:27
Alignment explanation
Indices: 47850224--47850302 Score: 99
Period size: 27 Copynumber: 2.9 Consensus size: 27
47850214 TATTCATCAT
* *
47850224 TTTACCATACATGGG-TATTACGGTCAC
1 TTTACCCTACAGGGGCT-TTACGGTCAC
*
47850251 TTTACCCT-CTAGGGGCTTTACGGTCAG
1 TTTACCCTAC-AGGGGCTTTACGGTCAC
47850278 TTTACCCTACAGGGGCTTTACGGTC
1 TTTACCCTACAGGGGCTTTACGGTC
47850303 TTTTGGCCTA
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
26 1 0.02
27 43 0.93
28 2 0.04
ACGTcount: A:0.19, C:0.25, G:0.23, T:0.33
Consensus pattern (27 bp):
TTTACCCTACAGGGGCTTTACGGTCAC
Found at i:47850393 original size:26 final size:25
Alignment explanation
Indices: 47850364--47850458 Score: 66
Period size: 26 Copynumber: 3.6 Consensus size: 25
47850354 GTAAATCTAC
47850364 AAACAAAAGGTATTTC-AGTAATTTGT
1 AAAC-AAAGGTATTTCTA-TAATTTGT
* *
47850390 AAACAATGGTATTTCTATAATTTTTAT
1 AAACAAAGGTATTTCTATAA--TTTGT
* * *
47850417 AAAGTCAAGGGTATTTCTGTAACTTGT
1 AAA--CAAAGGTATTTCTATAATTTGT
*
47850444 AAATCAAGGGTATTT
1 AAA-CAAAGGTATTT
47850459 TTGGTAATTT
Statistics
Matches: 58, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
25 13 0.22
26 17 0.29
27 13 0.22
29 15 0.26
ACGTcount: A:0.37, C:0.08, G:0.16, T:0.39
Consensus pattern (25 bp):
AAACAAAGGTATTTCTATAATTTGT
Found at i:47850402 original size:25 final size:26
Alignment explanation
Indices: 47850372--47850842 Score: 108
Period size: 27 Copynumber: 17.6 Consensus size: 26
47850362 ACAAACAAAA
*
47850372 GGTATTTCAGTAATTTGTAAA-CAAT
1 GGTATTTCAGTAATTTGTAAATCAAG
*
47850397 GGTATTTCTA-TAATTTTTATAAAGTCAAG
1 GGTATTTC-AGTAA--TTTGTAAA-TCAAG
* *
47850426 GGTATTTCTGTAACTTGTAAATCAAG
1 GGTATTTCAGTAATTTGTAAATCAAG
** **
47850452 GGTATTTTTGGTAATTT-TACAATTGAG
1 GGTA-TTTCAGTAATTTGTA-AATCAAG
** ** *
47850479 GGTATTTTGGTAATTTCACAAACCAAG
1 GGTATTTCAGTAATTT-GTAAATCAAG
** * *
47850506 GGTATTTTGGTAATTT-TACAAACTAG
1 GGTATTTCAGTAATTTGTA-AATCAAG
** *
47850532 GGTATTTTGGTAATTT-TACAAACCAAG
1 GGTATTTCAGTAATTTGT--AAATCAAG
* *
47850559 GGTATTTTAGTAATTTTATAAATCGAA-
1 GGTATTTCAGTAA-TTTGTAAATC-AAG
***
47850586 GGTAAAACAGTAATTTTGTAAATCAAG
1 GGTATTTCAGTAA-TTTGTAAATCAAG
*** * *
47850613 GGTAAAACAGTAATTCTATAAATCGAG
1 GGTATTTCAGTAATT-TGTAAATCAAG
** * * *
47850640 GGTA-AACGGTAATTCTGTAAGTCGAG
1 GGTATTTCAGTAATT-TGTAAATCAAG
*** *
47850666 GGTAAAAC-GATAATTATGTAAATCGAG
1 GGTATTTCAG-TAATT-TGTAAATCAAG
*** *
47850693 GGTAAAACGGTAATTATGTAAATCAAG
1 GGTATTTCAGTAATT-TGTAAATCAAG
** * **
47850720 GGTA-AAC-GATAATTCTATAAATCGGG
1 GGTATTTCAG-TAATT-TGTAAATCAAG
*
47850746 GGTACTTT-GGTAATTT-TACAAGTCGAA-
1 GGTA-TTTCAGTAATTTGTA-AA-TC-AAG
*
47850773 GGTATTTCAGTAATTT-TACAAATCGAG
1 GGTATTTCAGTAATTTGT--AAATCAAG
* *
47850800 GGTATTTCAGT-ATTTTTACAAACTAAG
1 GGTATTTCAGTAATTTGTA-AATC-AAG
*
47850827 GGTATTTCGGTAATTT
1 GGTATTTCAGTAATTT
47850843 TAGTAAACAA
Statistics
Matches: 363, Mismatches: 47, Indels: 69
0.76 0.10 0.14
Matches are distributed among these distances:
25 16 0.04
26 108 0.30
27 208 0.57
28 15 0.04
29 16 0.04
ACGTcount: A:0.35, C:0.09, G:0.20, T:0.36
Consensus pattern (26 bp):
GGTATTTCAGTAATTTGTAAATCAAG
Found at i:47850430 original size:29 final size:26
Alignment explanation
Indices: 47850372--47850458 Score: 70
Period size: 29 Copynumber: 3.3 Consensus size: 26
47850362 ACAAACAAAA
* * *
47850372 GGTATTTC-AGTAATTTGTAAA-CAAT
1 GGTATTTCTA-TAACTTATAAATCAAG
*
47850397 GGTATTTCTATAATTTTTATAAAGTCAAG
1 GGTATTTCTATAA--CTTATAAA-TCAAG
* *
47850426 GGTATTTCTGTAACTTGTAAATCAAG
1 GGTATTTCTATAACTTATAAATCAAG
47850452 GGTATTT
1 GGTATTT
47850459 TTGGTAATTT
Statistics
Matches: 52, Mismatches: 5, Indels: 9
0.79 0.08 0.14
Matches are distributed among these distances:
25 11 0.21
26 13 0.25
27 13 0.25
29 15 0.29
ACGTcount: A:0.32, C:0.08, G:0.17, T:0.43
Consensus pattern (26 bp):
GGTATTTCTATAACTTATAAATCAAG
Found at i:47850492 original size:26 final size:27
Alignment explanation
Indices: 47850448--47850576 Score: 181
Period size: 27 Copynumber: 4.8 Consensus size: 27
47850438 ACTTGTAAAT
*
47850448 CAAGGGTATTTTTGGTAATTTTAC-AAT
1 CAAGGGTA-TTTTGGTAATTTTACAAAC
** *
47850475 TGAGGGTATTTTGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
47850502 CAAGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAC
*
47850528 CTAGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
*
47850555 CAAGGGTATTTTAGTAATTTTA
1 CAAGGGTATTTTGGTAATTTTA
47850577 TAAATCGAAG
Statistics
Matches: 90, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
26 39 0.43
27 51 0.57
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAC
Found at i:47850514 original size:53 final size:53
Alignment explanation
Indices: 47850448--47850576 Score: 206
Period size: 53 Copynumber: 2.4 Consensus size: 53
47850438 ACTTGTAAAT
*
47850448 CAAGGGTATTTTTGGTAATTTTAC-AATTGAGGGTATTTTGGTAATTTCACAAAC
1 CAAGGGTA-TTTTGGTAATTTTACAAACT-AGGGTATTTTGGTAATTTCACAAAC
*
47850502 CAAGGGTATTTTGGTAATTTTACAAACTAGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAACTAGGGTATTTTGGTAATTTCACAAAC
*
47850555 CAAGGGTATTTTAGTAATTTTA
1 CAAGGGTATTTTGGTAATTTTA
47850577 TAAATCGAAG
Statistics
Matches: 71, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
53 60 0.85
54 11 0.15
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (53 bp):
CAAGGGTATTTTGGTAATTTTACAAACTAGGGTATTTTGGTAATTTCACAAAC
Found at i:47850589 original size:27 final size:26
Alignment explanation
Indices: 47850342--47850580 Score: 162
Period size: 27 Copynumber: 9.0 Consensus size: 26
47850332 TTCATCCTAT
* * * *
47850342 AAGGGTGTTTTGGTAAATCTACAAAC
1 AAGGGTATTTTGGTAATTTTATAAAC
* ** *
47850368 AAAAGGTATTTCAGTAA-TTTGTAAAC
1 -AAGGGTATTTTGGTAATTTTATAAAC
* *
47850394 AATGGTATTTCT-ATAATTTTTATAAAGTC
1 AAGGGTATTT-TGGTAA-TTTTATAAA--C
* *
47850423 AAGGGTATTTCT-GTAACTTGTA-AATC
1 AAGGGTATTT-TGGTAA-TTTTATAAAC
* **
47850449 AAGGGTATTTTTGGTAATTTTACAATT
1 AAGGGTA-TTTTGGTAATTTTATAAAC
* * *
47850476 GAGGGTATTTTGGTAATTTCACAAACC
1 AAGGGTATTTTGGTAATTTTATAAA-C
*
47850503 AAGGGTATTTTGGTAATTTTACAAAC
1 AAGGGTATTTTGGTAATTTTATAAAC
* *
47850529 TAGGGTATTTTGGTAATTTTACAAACC
1 AAGGGTATTTTGGTAATTTTATAAA-C
*
47850556 AAGGGTATTTTAGTAATTTTATAAA
1 AAGGGTATTTTGGTAATTTTATAAA
47850581 TCGAAGGTAA
Statistics
Matches: 174, Mismatches: 28, Indels: 20
0.78 0.13 0.09
Matches are distributed among these distances:
25 12 0.07
26 60 0.34
27 81 0.47
28 2 0.01
29 19 0.11
ACGTcount: A:0.34, C:0.08, G:0.18, T:0.40
Consensus pattern (26 bp):
AAGGGTATTTTGGTAATTTTATAAAC
Found at i:47850597 original size:27 final size:27
Alignment explanation
Indices: 47850567--47850743 Score: 159
Period size: 27 Copynumber: 6.6 Consensus size: 27
47850557 AGGGTATTTT
* *
47850567 AGTAATTTTATAAATCGAAGGTAAAAC
1 AGTAATTCTGTAAATCGAAGGTAAAAC
*
47850594 AGTAATTTTGTAAATC-AAGGGTAAAAC
1 AGTAATTCTGTAAATCGAA-GGTAAAAC
* *
47850621 AGTAATTCTATAAATCGAGGGT-AAAC
1 AGTAATTCTGTAAATCGAAGGTAAAAC
* * *
47850647 GGTAATTCTGTAAGTCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAAGGTAAAAC
* *
47850674 -GATAATTATGTAAATCGAGGGTAAAAC
1 AG-TAATTCTGTAAATCGAAGGTAAAAC
* *
47850701 GGTAATTATGTAAATC-AAGGGT-AAAC
1 AGTAATTCTGTAAATCGAA-GGTAAAAC
*
47850727 -GATAATTCTATAAATCG
1 AG-TAATTCTGTAAATCG
47850744 GGGGTACTTT
Statistics
Matches: 130, Mismatches: 12, Indels: 16
0.82 0.08 0.10
Matches are distributed among these distances:
25 1 0.01
26 43 0.33
27 84 0.65
28 2 0.02
ACGTcount: A:0.42, C:0.09, G:0.20, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAAGGTAAAAC
Found at i:47850651 original size:107 final size:107
Alignment explanation
Indices: 47850540--47850803 Score: 259
Period size: 107 Copynumber: 2.5 Consensus size: 107
47850530 AGGGTATTTT
* * *
47850540 GGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTATAAATCGAAGGTAAAACAGTAATTTTGT
1 GGTAATTTTACAAACCAAGGGTATTTAAGTAATTTTATAAATCGAGGGTAAAACAGTAATTATGT
47850605 AAATCAAGGGTAAAAC-AGTAATTCTATAAATCGAGGGTA-AAC
66 AAATCAAGGGT-AAACGA-TAATTCTATAAATCGAGGGTACAAC
* ** ** * * * * *
47850647 GGTAATTCTGTAAGTCGAGGGTA--AAACGATAATTATGTAAATCGAGGGTAAAACGGTAATTAT
1 GGTAATTTTACAAACCAAGGGTATTTAA-G-TAATTTTATAAATCGAGGGTAAAACAGTAATTAT
* ***
47850710 GTAAATCAAGGGTAAACGATAATTCTATAAATCGGGGGTACTTT
64 GTAAATCAAGGGTAAACGATAATTCTATAAATCGAGGGTACAAC
* * * *
47850754 GGTAATTTTACAAGTCGAA-GGTATTTCAGTAATTTTACAAATCGAGGGTA
1 GGTAATTTTACAA-ACCAAGGGTATTTAAGTAATTTTATAAATCGAGGGTA
47850804 TTTCAGTATT
Statistics
Matches: 121, Mismatches: 29, Indels: 14
0.74 0.18 0.09
Matches are distributed among these distances:
105 1 0.01
106 25 0.21
107 92 0.76
108 2 0.02
109 1 0.01
ACGTcount: A:0.39, C:0.09, G:0.21, T:0.31
Consensus pattern (107 bp):
GGTAATTTTACAAACCAAGGGTATTTAAGTAATTTTATAAATCGAGGGTAAAACAGTAATTATGT
AAATCAAGGGTAAACGATAATTCTATAAATCGAGGGTACAAC
Found at i:47850680 original size:53 final size:54
Alignment explanation
Indices: 47850569--47850749 Score: 242
Period size: 53 Copynumber: 3.4 Consensus size: 54
47850559 GGTATTTTAG
* * * *
47850569 TAATTTTATAAATCGAAGGTAAAACAGTAATTTTGTAAATCAAGGGTAAAAC-A
1 TAATTCTATAAATCGAGGGTAAAACGGTAATTATGTAAATCAAGGGTAAAACGA
* * *
47850622 GTAATTCTATAAATCGAGGGT-AAACGGTAATTCTGTAAGTCGAGGGTAAAACGA
1 -TAATTCTATAAATCGAGGGTAAAACGGTAATTATGTAAATCAAGGGTAAAACGA
* *
47850676 TAATTATGTAAATCGAGGGTAAAACGGTAATTATGTAAATCAAGGGT-AAACGA
1 TAATTCTATAAATCGAGGGTAAAACGGTAATTATGTAAATCAAGGGTAAAACGA
*
47850729 TAATTCTATAAATCGGGGGTA
1 TAATTCTATAAATCGAGGGTA
47850750 CTTTGGTAAT
Statistics
Matches: 111, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
53 69 0.62
54 42 0.38
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (54 bp):
TAATTCTATAAATCGAGGGTAAAACGGTAATTATGTAAATCAAGGGTAAAACGA
Found at i:47850749 original size:80 final size:80
Alignment explanation
Indices: 47850569--47850749 Score: 238
Period size: 80 Copynumber: 2.3 Consensus size: 80
47850559 GGTATTTTAG
* * * *
47850569 TAATTTTATAAATCGAAGGTAAAACAGTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTATAA
1 TAATTCTATAAATCGAGGGTAAAACAGTAATTATGTAAATCAAGGGTAAAACAGTAATTATATAA
* *
47850634 ATCGAGGGTAAACGG
66 ATCAAGGGTAAACGA
* * * * *
47850649 TAATTCTGTAAGTCGAGGGTAAAAC-GATAATTATGTAAATCGAGGGTAAAACGGTAATTATGTA
1 TAATTCTATAAATCGAGGGTAAAACAG-TAATTATGTAAATCAAGGGTAAAACAGTAATTATATA
47850713 AATCAAGGGTAAACGA
65 AATCAAGGGTAAACGA
*
47850729 TAATTCTATAAATCGGGGGTA
1 TAATTCTATAAATCGAGGGTA
47850750 CTTTGGTAAT
Statistics
Matches: 86, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
79 1 0.01
80 85 0.99
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (80 bp):
TAATTCTATAAATCGAGGGTAAAACAGTAATTATGTAAATCAAGGGTAAAACAGTAATTATATAA
ATCAAGGGTAAACGA
Found at i:47850776 original size:27 final size:27
Alignment explanation
Indices: 47850755--47850844 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
47850745 GGGTACTTTG
*
47850755 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
*
47850782 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* * *
47850809 GTATTTTTACAAA-CTAAGGGTATTTCG
1 GTAATTTTACAAATCGAA-GGTATTTCA
47850836 GTAATTTTA
1 GTAATTTTA
47850845 GTAAACAAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 2 0.04
27 53 0.96
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:47850803 original size:54 final size:54
Alignment explanation
Indices: 47850729--47850844 Score: 128
Period size: 54 Copynumber: 2.1 Consensus size: 54
47850719 GGGTAAACGA
* * * * *
47850729 TAATTCTATAAATCGGGGGTACTTT-GGTAATTTTACAAGTCGAA-GGTATTTCAG
1 TAATTTTACAAATCGAGGGTA-TTTCAGTAATTTTACAA-ACGAAGGGTATTTCAG
* * *
47850783 TAATTTTACAAATCGAGGGTATTTCAGTATTTTTACAAACTAAGGGTATTTCGG
1 TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAG
47850837 TAATTTTA
1 TAATTTTA
47850845 GTAAACAAAA
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
53 6 0.12
54 46 0.88
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (54 bp):
TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAG
Found at i:47853171 original size:40 final size:40
Alignment explanation
Indices: 47853061--47853277 Score: 292
Period size: 39 Copynumber: 5.6 Consensus size: 40
47853051 ACTACTTGCT
* *
47853061 CAAATGCCTTCAGGACTTAGCCCGGTTATAGTAA-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
47853100 CAAATGCCTTCGGGTC-TAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
47853139 CAAATGCCTTCGGGACTTAGCCCGGGTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
47853179 CAAATGCCTTC-GGACTTAG-CCGGAT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
47853216 -AAATGCCTT--GGAGCTTAG-CCGGA-ATTAGTCACTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATA-TAGTAACTCGCA
47853253 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
47853278 TTATCATCCA
Statistics
Matches: 161, Mismatches: 8, Indels: 17
0.87 0.04 0.09
Matches are distributed among these distances:
35 3 0.02
36 19 0.12
37 22 0.14
38 30 0.19
39 47 0.29
40 40 0.25
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:47853268 original size:114 final size:118
Alignment explanation
Indices: 47853061--47853277 Score: 315
Period size: 114 Copynumber: 1.9 Consensus size: 118
47853051 ACTACTTGCT
*
47853061 CAAATGCCTTCAGGACTTAGCCCGGTTATAGTAATCGCACAAATGCCTTCGGGTCTAGCCCGGAT
1 CAAATGCCTTCAGGACTTAGCCCGGATATAGTAATCGCACAAATGCCTTCGGGTCTAGCCCGGAT
*
47853126 ATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGGTATAGTAACTCGCA
66 ATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAGTAACTCGCA
47853179 CAAATGCCTTC-GGACTTAG-CCGGAT-TAGTAACTCGCA-AAATGCCTT-GGAG-CTTAG-CCG
1 CAAATGCCTTCAGGACTTAGCCCGGATATAGTAA-TCGCACAAATGCCTTCGG-GTC-TAGCCCG
*
47853237 GA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGG
63 GATA-TAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
47853278 TTATCATCCA
Statistics
Matches: 92, Mismatches: 3, Indels: 12
0.86 0.03 0.11
Matches are distributed among these distances:
113 1 0.01
114 43 0.47
115 19 0.21
116 10 0.11
117 8 0.09
118 11 0.12
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.24
Consensus pattern (118 bp):
CAAATGCCTTCAGGACTTAGCCCGGATATAGTAATCGCACAAATGCCTTCGGGTCTAGCCCGGAT
ATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAGTAACTCGCA
Found at i:47860684 original size:21 final size:21
Alignment explanation
Indices: 47860658--47860699 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
47860648 AATTAGTTTC
*
47860658 GGCTAA-GTATAACATTCATAT
1 GGCTAATGGATAAC-TTCATAT
47860679 GGCTAATGGATAACTTCATAT
1 GGCTAATGGATAACTTCATAT
47860700 ATGCACATTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Consensus pattern (21 bp):
GGCTAATGGATAACTTCATAT
Found at i:47861009 original size:40 final size:40
Alignment explanation
Indices: 47860956--47861218 Score: 385
Period size: 40 Copynumber: 6.6 Consensus size: 40
47860946 ACTACTTGCT
*
47860956 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
47860996 CAAATGCCTTCGGGTCTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
47861036 CAAATGCCTTCGGGTCTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
47861076 CAAATGCCTTC-GGACTTAGCCCGG-TATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
47861114 CAAATGCCTTCGGGACTTAGCCC-GATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * * *
47861153 CAAATGCCTTCGGAAGCTATAG-CC-GAAATTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CT-TAGCCCGGATA-TAGTAAC-TCGCA
47861195 CAAATGCCTTC-GGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
47861219 TTATCATCCA
Statistics
Matches: 207, Mismatches: 8, Indels: 15
0.90 0.03 0.07
Matches are distributed among these distances:
38 26 0.13
39 54 0.26
40 100 0.48
41 12 0.06
42 15 0.07
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:47869107 original size:39 final size:40
Alignment explanation
Indices: 47868958--47869214 Score: 364
Period size: 40 Copynumber: 6.5 Consensus size: 40
47868948 ACTACTTGCT
* *
47868958 CAAATGCCTTTGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
47868998 CAAATGCCTTCGGGTCTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
47869038 CAAATGCCTT-TGGTC-TAG-CCGGATATAGTAACTCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
47869075 CAAATGCCTTCGGGACTTAGCCCTG-TATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
47869114 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * * *
47869154 CAAATGCCTTC-GGAGCTTAGCCAGAAT-TAGTCACTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAACTCGCA
47869193 CAAATGCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
47869215 TGGTTATCAT
Statistics
Matches: 197, Mismatches: 14, Indels: 13
0.88 0.06 0.06
Matches are distributed among these distances:
37 28 0.14
38 6 0.03
39 75 0.38
40 88 0.45
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:47869159 original size:79 final size:79
Alignment explanation
Indices: 47868958--47869214 Score: 353
Period size: 79 Copynumber: 3.3 Consensus size: 79
47868948 ACTACTTGCT
* * * *
47868958 CAAATGCCTTTGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGTCTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAG
47869023 ATATAGTAACTCGCA
66 -TATAGTAACTCGCA
* * * *
47869038 CAAATGCCTT-TGGTC-TAG-CCGGATATAGTAACTCGGACAAATGCCTTCGGGACTTAGCCCTG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAG
47869100 TATAGTAACTCGCA
66 TATAGTAACTCGCA
47869114 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC-GGAGCTTAG-CCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCA
* * *
47869177 GAATTAGTCACTAGCA
65 GTA-TAGTAACTCGCA
47869193 CAAATGCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
47869215 TGGTTATCAT
Statistics
Matches: 159, Mismatches: 13, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
76 24 0.15
77 43 0.27
78 13 0.08
79 69 0.43
80 10 0.06
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAG
TATAGTAACTCGCA
Found at i:47873620 original size:12 final size:12
Alignment explanation
Indices: 47873603--47873634 Score: 55
Period size: 12 Copynumber: 2.6 Consensus size: 12
47873593 ACTTAATCTT
47873603 TTTAATATTAAA
1 TTTAATATTAAA
47873615 TTTAATATTAAA
1 TTTAATATTAAA
47873627 TCTTAATA
1 T-TTAATA
47873635 AAATAATAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 13 0.68
13 6 0.32
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (12 bp):
TTTAATATTAAA
Found at i:47887771 original size:48 final size:48
Alignment explanation
Indices: 47887682--47887902 Score: 241
Period size: 48 Copynumber: 4.6 Consensus size: 48
47887672 ATGTGCTAGG
* * * * *
47887682 GTAAGACCATGTCTGGGACATGGCATTGGCCACAGTGTGAGAGCCAAT
1 GTAAGACCATGTCTGGGACATGGCATCGGCCTCATTATGAGAGCCAGT
* *
47887730 GTAAGACCATGTCTGGGACATGACATCGGCCTCATTATGAGATCCAGT
1 GTAAGACCATGTCTGGGACATGGCATCGGCCTCATTATGAGAGCCAGT
* * * *
47887778 GTAAGACCATGT-TGGGAACATGGCATAGGCAT-AGTTATGAGATCTAGT
1 GTAAGACCATGTCTGGG-ACATGGCATCGGCCTCA-TTATGAGAGCCAGT
* * * *
47887826 GTAAAACCATGTCTGGGACATGGCATCGACCTCGACT-TGTGAGCCAGT
1 GTAAGACCATGTCTGGGACATGGCATCGGCCTC-ATTATGAGAGCCAGT
* *
47887874 GTAAGACCATGTCTAGAACATGGCATCGG
1 GTAAGACCATGTCTGGGACATGGCATCGG
47887903 TAATTTACCC
Statistics
Matches: 145, Mismatches: 23, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
47 5 0.03
48 134 0.92
49 5 0.03
50 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (48 bp):
GTAAGACCATGTCTGGGACATGGCATCGGCCTCATTATGAGAGCCAGT
Found at i:47887819 original size:96 final size:97
Alignment explanation
Indices: 47887682--47887899 Score: 268
Period size: 96 Copynumber: 2.3 Consensus size: 97
47887672 ATGTGCTAGG
* * *
47887682 GTAAGACCATGTCTGGG-ACATGGCATTGGCCACAGTGTGAGAGCCAATGTAAGACCATGTCTGG
1 GTAAGACCATGTCTGGGAACATGGCATAGGCCACAGTATGAGAGCCAATGTAAAACCATGTCTGG
*
47887746 GACATGACATCGGCCTC-A-TTATGAGATCCAGT
66 GACATGACATCGACCTCGACTTATGAG--CCAGT
* * * *
47887778 GTAAGACCATGT-TGGGAACATGGCATAGG-CATAGTTATGAGATCTAGTGTAAAACCATGTCTG
1 GTAAGACCATGTCTGGGAACATGGCATAGGCCACAG-TATGAGAGCCAATGTAAAACCATGTCTG
* *
47887841 GGACATGGCATCGACCTCGACTTGTGAGCCAGT
65 GGACATGACATCGACCTCGACTTATGAGCCAGT
*
47887874 GTAAGACCATGTCT-AGAACATGGCAT
1 GTAAGACCATGTCTGGGAACATGGCAT
47887900 CGGTAATTTA
Statistics
Matches: 106, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
95 8 0.08
96 90 0.85
97 2 0.02
98 6 0.06
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (97 bp):
GTAAGACCATGTCTGGGAACATGGCATAGGCCACAGTATGAGAGCCAATGTAAAACCATGTCTGG
GACATGACATCGACCTCGACTTATGAGCCAGT
Found at i:47890115 original size:28 final size:28
Alignment explanation
Indices: 47890077--47890183 Score: 160
Period size: 28 Copynumber: 3.8 Consensus size: 28
47890067 GAATCATTCG
* *
47890077 ATATTTTGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
47890105 ATATCTCGCACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
47890133 ATATTTCGTACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
47890161 ATATTTCGTACACTAAGTACCAT
1 ATATTTCGCACACTAAGTGCCAT
47890184 ATTTGATTGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 73 1.00
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.35
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:47895186 original size:28 final size:28
Alignment explanation
Indices: 47895150--47895304 Score: 112
Period size: 28 Copynumber: 5.5 Consensus size: 28
47895140 AACCGATCTT
47895150 GCACACACAGTGCTTGGTTACGGAACTC
1 GCACACACAGTGCTTGGTTACGGAACTC
* ***** * *
47895178 GTACACACAGTGCCTCAACAACCGATCTC
1 GCACACACAGTG-CTTGGTTACGGAACTC
*
47895207 GCACACACAGTGCTTGGTTACGAAACTC
1 GCACACACAGTGCTTGGTTACGGAACTC
***** * *
47895235 GCACACACAGTGCCTCAACAACCGATCTC
1 GCACACACAGTG-CTTGGTTACGGAACTC
* * *
47895264 GCACACACAATGCTCGATTACGGAACTC
1 GCACACACAGTGCTTGGTTACGGAACTC
*
47895292 ACACACACAGTGC
1 GCACACACAGTGC
47895305 CTATGTTCAC
Statistics
Matches: 92, Mismatches: 33, Indels: 4
0.71 0.26 0.03
Matches are distributed among these distances:
28 53 0.58
29 39 0.42
ACGTcount: A:0.30, C:0.34, G:0.18, T:0.17
Consensus pattern (28 bp):
GCACACACAGTGCTTGGTTACGGAACTC
Found at i:47895191 original size:57 final size:57
Alignment explanation
Indices: 47895120--47895306 Score: 284
Period size: 57 Copynumber: 3.2 Consensus size: 57
47895110 GATCTCATTT
* *
47895120 CACACACTTAGTGCCCCAACAACCGATCTTGCACACACAGTGCTTGGTTACGGAACTCG
1 CACACAC--AGTGCCTCAACAACCGATCTCGCACACACAGTGCTTGGTTACGGAACTCG
* *
47895179 TACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTTGGTTACGAAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTTGGTTACGGAACTCG
* * * *
47895236 CACACACAGTGCCTCAACAACCGATCTCGCACACACAATGCTCGATTACGGAACTCA
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTTGGTTACGGAACTCG
47895293 CACACACAGTGCCT
1 CACACACAGTGCCT
47895307 ATGTTCACTT
Statistics
Matches: 118, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
57 112 0.95
59 6 0.05
ACGTcount: A:0.30, C:0.35, G:0.17, T:0.18
Consensus pattern (57 bp):
CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTTGGTTACGGAACTCG
Found at i:47895215 original size:29 final size:29
Alignment explanation
Indices: 47895120--47895272 Score: 114
Period size: 29 Copynumber: 5.3 Consensus size: 29
47895110 GATCTCATTT
* *
47895120 CACACACTTAGTGCCCCAACAACCGATCTTG
1 CACACAC--AGTGCCTCAACAACCGATCTCG
***** * *
47895151 CACACACAGTG-CTTGGTTACGGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCG
*
47895179 TACACACAGTGCCTCAACAACCGATCTCG
1 CACACACAGTGCCTCAACAACCGATCTCG
***** *
47895208 CACACACAGTG-CTTGGTTA-CGAAACTCG
1 CACACACAGTGCCTCAACAACCG-ATCTCG
47895236 CACACACAGTGCCTCAACAACCGATCTCG
1 CACACACAGTGCCTCAACAACCGATCTCG
47895265 CACACACA
1 CACACACA
47895273 ATGCTCGATT
Statistics
Matches: 88, Mismatches: 30, Indels: 10
0.69 0.23 0.08
Matches are distributed among these distances:
27 2 0.02
28 37 0.42
29 40 0.45
30 2 0.02
31 7 0.08
ACGTcount: A:0.30, C:0.36, G:0.16, T:0.18
Consensus pattern (29 bp):
CACACACAGTGCCTCAACAACCGATCTCG
Found at i:47897313 original size:28 final size:28
Alignment explanation
Indices: 47897275--47897381 Score: 151
Period size: 28 Copynumber: 3.8 Consensus size: 28
47897265 GAATCATTCG
* *
47897275 ATATTTTGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
47897303 ATATCTCGCACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
**
47897331 ATATTTCATACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
47897359 ATATTTCGTACACTAAGTACCAT
1 ATATTTCGCACACTAAGTGCCAT
47897382 ATTTGATTAC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 71 1.00
ACGTcount: A:0.31, C:0.25, G:0.09, T:0.35
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:47901444 original size:23 final size:23
Alignment explanation
Indices: 47901418--47901598 Score: 233
Period size: 23 Copynumber: 7.9 Consensus size: 23
47901408 AGCTACATCT
47901418 CAGTGGTAGCTTCGGCTACAATA
1 CAGTGGTAGCTTCGGCTACAATA
47901441 CAGTGGTAGCTTCGGCTACAATA
1 CAGTGGTAGCTTCGGCTACAATA
* ** *
47901464 TAGTGGTAGCTTTAGCTAAAATA
1 CAGTGGTAGCTTCGGCTACAATA
* * * *
47901487 TAGTGGTAGCTTCGACTAC-CTCT
1 CAGTGGTAGCTTCGGCTACAAT-A
47901510 CAGTGGTAGCTTCGGCTACAATA
1 CAGTGGTAGCTTCGGCTACAATA
*
47901533 CAGTGGTAGCTTTGGCTAC-AT-
1 CAGTGGTAGCTTCGGCTACAATA
47901554 CTTAGTGGTAGCTTCGGCTACAATA
1 C--AGTGGTAGCTTCGGCTACAATA
47901579 CAGTGGTAGCTTCGGCTACA
1 CAGTGGTAGCTTCGGCTACA
47901599 TCTCCGTGGT
Statistics
Matches: 136, Mismatches: 16, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
21 1 0.01
22 3 0.02
23 128 0.94
24 3 0.02
25 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.30
Consensus pattern (23 bp):
CAGTGGTAGCTTCGGCTACAATA
Found at i:47901519 original size:69 final size:69
Alignment explanation
Indices: 47901419--47901598 Score: 265
Period size: 69 Copynumber: 2.6 Consensus size: 69
47901409 GCTACATCTC
*
47901419 AGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTCGGCTACAATATAGTGGTAGCTTTAGCTAAA
1 AGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTTAGCT-AA
47901484 AT-AT
65 ATCAT
* * * * *
47901488 AGTGGTAGCTTCGACTAC-CTCTCAGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTTGGCTAC
1 AGTGGTAGCTTCGGCTACAAT-ACAGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTTAGCTAA
*
47901552 ATCTT
65 ATCAT
47901557 AGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTCGGCTACA
1 AGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTCGGCTACA
47901599 TCTCCGTGGT
Statistics
Matches: 98, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
68 4 0.04
69 93 0.95
70 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (69 bp):
AGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTTAGCTAAA
TCAT
Found at i:47901600 original size:46 final size:46
Alignment explanation
Indices: 47901409--47901629 Score: 300
Period size: 46 Copynumber: 4.8 Consensus size: 46
47901399 GAATCTATCA
47901409 GCTACATCTCAGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTCG
1 GCTACATCTCAGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTCG
* ** * *
47901455 GCTACAATAT-AGTGGTAGCTTTAGCTAAAATATAGTGGTAGCTTCG
1 GCTAC-ATCTCAGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTCG
* * *
47901501 ACTACCTCTCAGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTTG
1 GCTACATCTCAGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTCG
*
47901547 GCTACATCTTAGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTCG
1 GCTACATCTCAGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTCG
* * * * *
47901593 GCTACATCTCCGTGGTGGCTTCAGCTATATTACAGTG
1 GCTACATCTCAGTGGTAGCTTCGGCTACAATACAGTG
47901630 TGGCACTTTG
Statistics
Matches: 150, Mismatches: 23, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
45 2 0.01
46 145 0.97
47 3 0.02
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (46 bp):
GCTACATCTCAGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTCG
Found at i:47901607 original size:23 final size:23
Alignment explanation
Indices: 47901409--47901619 Score: 207
Period size: 23 Copynumber: 9.2 Consensus size: 23
47901399 GAATCTATCA
47901409 GCTACATCTCAGTGGTAGCTTCG
1 GCTACATCTCAGTGGTAGCTTCG
*
47901432 GCTACAAT-ACAGTGGTAGCTTCG
1 GCTAC-ATCTCAGTGGTAGCTTCG
* **
47901455 GCTACAATAT-AGTGGTAGCTTTA
1 GCTAC-ATCTCAGTGGTAGCTTCG
* *
47901478 GCTAAAATAT-AGTGGTAGCTTCG
1 GCT-ACATCTCAGTGGTAGCTTCG
* *
47901501 ACTACCTCTCAGTGGTAGCTTCG
1 GCTACATCTCAGTGGTAGCTTCG
* *
47901524 GCTACAAT-ACAGTGGTAGCTTTG
1 GCTAC-ATCTCAGTGGTAGCTTCG
*
47901547 GCTACATCTTAGTGGTAGCTTCG
1 GCTACATCTCAGTGGTAGCTTCG
*
47901570 GCTACAAT-ACAGTGGTAGCTTCG
1 GCTAC-ATCTCAGTGGTAGCTTCG
* * *
47901593 GCTACATCTCCGTGGTGGCTTCA
1 GCTACATCTCAGTGGTAGCTTCG
47901616 GCTA
1 GCTA
47901620 TATTACAGTG
Statistics
Matches: 156, Mismatches: 24, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
22 7 0.04
23 143 0.92
24 6 0.04
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.30
Consensus pattern (23 bp):
GCTACATCTCAGTGGTAGCTTCG
Found at i:47905562 original size:15 final size:15
Alignment explanation
Indices: 47905542--47905571 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
47905532 ATTATGAAAG
47905542 ATATGTTTTGGATTA
1 ATATGTTTTGGATTA
*
47905557 ATATGTTTTGTATTA
1 ATATGTTTTGGATTA
47905572 GAATATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.00, G:0.17, T:0.57
Consensus pattern (15 bp):
ATATGTTTTGGATTA
Found at i:47906792 original size:23 final size:23
Alignment explanation
Indices: 47906766--47906811 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
47906756 ATTTGCTTAA
47906766 GGCTTACTAAGCTAAGTTAGCTT
1 GGCTTACTAAGCTAAGTTAGCTT
47906789 GGCTTACTAAGCTAAGTTAGCTT
1 GGCTTACTAAGCTAAGTTAGCTT
47906812 ACTCTGTGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.22, T:0.35
Consensus pattern (23 bp):
GGCTTACTAAGCTAAGTTAGCTT
Found at i:47912192 original size:48 final size:48
Alignment explanation
Indices: 47912124--47912504 Score: 362
Period size: 48 Copynumber: 7.9 Consensus size: 48
47912114 GCACATTTGG
*
47912124 TTGATATGTGTG-TGAGTGTAAGACCATGTCTGGGACATGGCATTGACA
1 TTGATATGTGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATTGACA
* * *
47912172 TTGATATGTGTGCTAGTGTAAGACCATGTCTAGGACATGGCATTGACG
1 TTGATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGACA
* * *
47912220 TTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGACATCAGCCACA
1 TTGATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCAT-TG--ACA
* * * * *
47912271 -T--TATGAGATCCAGTGTAAGACCATGT-TGGGAACATGGCA-TCAGTA
1 TTGATATGTGAGCTAGTGTAAGACCATGTCTGGG-ACATGGCATTGA-CA
* * * * * *
47912316 TAGTTATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCA-TCAGCC
1 TTGATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGA-CA
* * **
47912364 TCGACATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAACA
1 TTGATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGACA
* * * * *
47912412 TTGAGATGAGAGCTAGTGTGAGACCATGTCTGGGACATGGCATCGGCA
1 TTGATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGACA
* * * * *
47912460 TCGACATGTGAGCCAGTGTAAGACTATGTCTAGGACATGGCATTG
1 TTGATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTG
47912505 GCAATTTACC
Statistics
Matches: 280, Mismatches: 42, Indels: 22
0.81 0.12 0.06
Matches are distributed among these distances:
44 1 0.00
45 1 0.00
47 4 0.01
48 265 0.95
49 6 0.02
50 1 0.00
51 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (48 bp):
TTGATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGACA
Found at i:47912398 original size:144 final size:142
Alignment explanation
Indices: 47912138--47912502 Score: 434
Period size: 144 Copynumber: 2.5 Consensus size: 142
47912128 TATGTGTGTG
* * *
47912138 AGTGTAAGACCATGTCTGGGACATGGCAT-TGACATTGATATGTGTGCTAGTGTAAGACCATGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAG-CATAGATATGTGAGCTAGTGTAAGACCATGTC
* * * * *
47912202 TAGGACATGGCATTGACGTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGACATCAGC
65 TAGGACATGGCATAGACCTCGACATGTGAGCTAGTGTAAGACCATGTCTGGGACATGACATCA--
*
47912267 CACATT-ATGAGATCC
128 -ACATTGATGAGAGCC
* * *
47912282 AGTGTAAGACCATGT-TGGGAACATGGCATCAGTATAGTTATGAGAGCTAGTGTAAGACCATGTC
1 AGTGTAAGACCATGTCTGGG-ACATGGCATCAGCATAGATATGTGAGCTAGTGTAAGACCATGTC
*
47912346 T-GGAACATGGCATCAG-CCTCGACATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCA
65 TAGG-ACATGGCAT-AGACCTCGACATGTGAGCTAGTGTAAGACCATGTCTGGGACATGACATCA
*
47912409 ACATTGAGATGAGAGCT
128 ACATT--GATGAGAGCC
* * * * * *
47912426 AGTGTGAGACCATGTCTGGGACATGGCATCGGCATCGACATGTGAGCCAGTGTAAGACTATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCATAGATATGTGAGCTAGTGTAAGACCATGTCT
47912491 AGGACATGGCAT
66 AGGACATGGCAT
47912503 TGGCAATTTA
Statistics
Matches: 189, Mismatches: 23, Indels: 18
0.82 0.10 0.08
Matches are distributed among these distances:
141 5 0.03
143 6 0.03
144 170 0.90
145 8 0.04
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (142 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCATAGATATGTGAGCTAGTGTAAGACCATGTCT
AGGACATGGCATAGACCTCGACATGTGAGCTAGTGTAAGACCATGTCTGGGACATGACATCAACA
TTGATGAGAGCC
Found at i:47918474 original size:40 final size:40
Alignment explanation
Indices: 47918430--47918617 Score: 331
Period size: 40 Copynumber: 4.7 Consensus size: 40
47918420 GCAAACACAT
* * *
47918430 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
47918470 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
47918510 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
47918550 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCGTAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
47918590 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
47918618 TCCAATGCTC
Statistics
Matches: 142, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:47934758 original size:37 final size:40
Alignment explanation
Indices: 47934717--47934814 Score: 130
Period size: 40 Copynumber: 2.5 Consensus size: 40
47934707 TTTGGTTTAG
47934717 TAATTG-AATT-A-AATTGGTTAATGTCTTAAGTAGATAA
1 TAATTGTAATTCATAATTGGTTAATGTCTTAAGTAGATAA
* *
47934754 TAATTGTGATTCATGATTGGTTAATGTCTTAAGTAGATAA
1 TAATTGTAATTCATAATTGGTTAATGTCTTAAGTAGATAA
* * *
47934794 TAATTGTGACTCATGATTGGT
1 TAATTGTAATTCATAATTGGT
47934815 ATTGAATTAT
Statistics
Matches: 55, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
37 6 0.11
38 3 0.05
39 1 0.02
40 45 0.82
ACGTcount: A:0.34, C:0.05, G:0.19, T:0.42
Consensus pattern (40 bp):
TAATTGTAATTCATAATTGGTTAATGTCTTAAGTAGATAA
Found at i:47934774 original size:40 final size:40
Alignment explanation
Indices: 47934729--47934814 Score: 163
Period size: 40 Copynumber: 2.1 Consensus size: 40
47934719 ATTGAATTAA
*
47934729 ATTGGTTAATGTCTTAAGTAGATAATAATTGTGATTCATG
1 ATTGGTTAATGTCTTAAGTAGATAATAATTGTGACTCATG
47934769 ATTGGTTAATGTCTTAAGTAGATAATAATTGTGACTCATG
1 ATTGGTTAATGTCTTAAGTAGATAATAATTGTGACTCATG
47934809 ATTGGT
1 ATTGGT
47934815 ATTGAATTAT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 45 1.00
ACGTcount: A:0.31, C:0.06, G:0.21, T:0.42
Consensus pattern (40 bp):
ATTGGTTAATGTCTTAAGTAGATAATAATTGTGACTCATG
Found at i:47943920 original size:43 final size:43
Alignment explanation
Indices: 47943823--47943945 Score: 158
Period size: 43 Copynumber: 2.8 Consensus size: 43
47943813 ATACATATCG
* * *
47943823 ATGCCACTGTCCCAGACAAGGTCTTACACGAAAATCATAATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACG-TAATCATAATACA
* *
47943867 ATGCCAATGTCCTAGCCATGGTCTTACACGTAATC-TCAATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCAT-AATACA
* *
47943910 ATGTCAATGTCCCAGACATGGTCTTACATGTAATCA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCA
47943946 CATCTCGATA
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
42 1 0.01
43 41 0.60
44 26 0.38
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCATAATACA
Found at i:47948772 original size:58 final size:56
Alignment explanation
Indices: 47948626--47948772 Score: 136
Period size: 56 Copynumber: 2.6 Consensus size: 56
47948616 CGTATAATAG
* * * * *
47948626 GATTACCAGTCCGGGCTAAATCCTTTATATAACGTATGCTTAAAGAGTTTAATTAG
1 GATTACCAATCCAGGCTAAATCCTTTATATAACGTATACTCAAAGAGTTTAATTAA
* * * * * *
47948682 GGTTACTAGTCCAAGCTAAA-CCCTGATCATAACGTATACTC-AAGAGGTATTATATTAA
1 GATTACCAATCCAGGCTAAATCCTTTAT-ATAACGTATACTCAAAGA-GT-TTA-ATTAA
*
47948740 GATTACCAATCTAGGCTAAATCCTTTATATAAC
1 GATTACCAATCCAGGCTAAATCCTTTATATAAC
47948773 AAGGTTAATG
Statistics
Matches: 70, Mismatches: 16, Indels: 8
0.74 0.17 0.09
Matches are distributed among these distances:
55 9 0.13
56 29 0.41
57 3 0.04
58 24 0.34
59 5 0.07
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (56 bp):
GATTACCAATCCAGGCTAAATCCTTTATATAACGTATACTCAAAGAGTTTAATTAA
Found at i:47954470 original size:37 final size:37
Alignment explanation
Indices: 47954420--47954498 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
47954410 TTATTACGAA
* * *
47954420 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
47954457 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
47954494 GTCTT
1 GTCTT
47954499 TAGAGCTCGA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:47954694 original size:47 final size:47
Alignment explanation
Indices: 47954616--47955052 Score: 649
Period size: 47 Copynumber: 9.2 Consensus size: 47
47954606 CCCTTCGGGA
* * * * * **
47954616 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
47954663 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
**
47954710 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
47954757 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* * *
47954806 CTTATCGCACATATACACTTTCACATTCATCACATCGACCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
47954853 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
47954902 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
47954949 CCTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
47954997 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
47955044 CTTATCACA
1 CTTATCACA
47955053 ATTTAGAATT
Statistics
Matches: 355, Mismatches: 30, Indels: 10
0.90 0.08 0.03
Matches are distributed among these distances:
47 224 0.63
48 45 0.13
49 86 0.24
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
Found at i:47954811 original size:96 final size:95
Alignment explanation
Indices: 47954616--47955054 Score: 657
Period size: 96 Copynumber: 4.6 Consensus size: 95
47954606 CCCTTCGGGA
** * * * * * * *
47954616 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCAC-ATATATACA
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACA
47954680 CTTTCACATTCATCACATCGGCCATTAAGC
66 CTTTCACATTCATCACATCGGCCATTAAGC
* *
47954710 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATAC
* *
47954775 ACTTTCACATTCATCACATCGGCTATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAAGC
* * *
47954806 CTTATCGCACATATACACTTTCACATTCATCACATCGACCATTAAGCCTTATCACATATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATAC
*
47954871 ACTTTCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAAGC
* *
47954902 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATTCAC-ATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA-TCACAATATATAC
47954966 ACTTTCACATTCATCACATCGGCCATTAAGC
65 ACTTTCACATTCATCACATCGGCCATTAAGC
*
47954997 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAAT
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAAT
47955055 TTAGAATTCA
Statistics
Matches: 317, Mismatches: 24, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
94 48 0.15
95 90 0.28
96 175 0.55
97 4 0.01
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.32
Consensus pattern (95 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACA
CTTTCACATTCATCACATCGGCCATTAAGC
Done.