Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 154 of 356
Found at i:49593941 original size:19 final size:19
Alignment explanation
Indices: 49593916--49593986 Score: 92
Period size: 19 Copynumber: 3.8 Consensus size: 19
49593906 TTACCTGATA
49593916 CTGATTCTGATTCTGTCAC
1 CTGATTCTGATTCTGTCAC
* * *
49593935 CTAATTCTGATTC--TAATT
1 CTGATTCTGATTCTGTCA-C
49593953 CTGATTCTGATTCTGTCAC
1 CTGATTCTGATTCTGTCAC
49593972 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
49593987 ATTCTTATTT
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
17 2 0.05
18 12 0.28
19 27 0.63
20 2 0.05
ACGTcount: A:0.18, C:0.23, G:0.14, T:0.45
Consensus pattern (19 bp):
CTGATTCTGATTCTGTCAC
Found at i:49593957 original size:37 final size:37
Alignment explanation
Indices: 49593916--49594003 Score: 140
Period size: 37 Copynumber: 2.4 Consensus size: 37
49593906 TTACCTGATA
49593916 CTGATTCTGATTCTGTCACCTAATTCTGATTCTAATT
1 CTGATTCTGATTCTGTCACCTAATTCTGATTCTAATT
* *
49593953 CTGATTCTGATTCTGTCACCTGATTCTGATTCTGATT
1 CTGATTCTGATTCTGTCACCTAATTCTGATTCTAATT
* *
49593990 CTTATTTTGATTCT
1 CTGATTCTGATTCT
49594004 AGTTCTGATA
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 47 1.00
ACGTcount: A:0.18, C:0.20, G:0.12, T:0.49
Consensus pattern (37 bp):
CTGATTCTGATTCTGTCACCTAATTCTGATTCTAATT
Found at i:49595270 original size:34 final size:34
Alignment explanation
Indices: 49595220--49595308 Score: 128
Period size: 34 Copynumber: 2.6 Consensus size: 34
49595210 TGGATACTGT
*
49595220 ACTGAAATGGGCTAAGGCCCACACTGATATTGTC-
1 ACTGATATGGGCTAAGGCCCACACTGATATTG-CG
49595254 ACTG-TATTGGGCTAAGGCCCACACTGATATTGCG
1 ACTGATA-TGGGCTAAGGCCCACACTGATATTGCG
*
49595288 ACTGATATGGGCTTAGGCCCA
1 ACTGATATGGGCTAAGGCCCA
49595309 GACCGTTCAA
Statistics
Matches: 50, Mismatches: 2, Indels: 6
0.86 0.03 0.10
Matches are distributed among these distances:
33 2 0.04
34 46 0.92
35 2 0.04
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.25
Consensus pattern (34 bp):
ACTGATATGGGCTAAGGCCCACACTGATATTGCG
Found at i:49597058 original size:27 final size:27
Alignment explanation
Indices: 49597028--49597225 Score: 279
Period size: 27 Copynumber: 7.3 Consensus size: 27
49597018 TACTGAAATG
* * * *
49597028 CCCTCAATTTGTAAAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
49597055 CCCTCAATTTACAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
49597082 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
***
49597109 CCCTCGATTTATAGAATTATTGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
49597136 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
*
49597163 CCCTCGATTTACAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* * *
49597190 CCCTTGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
49597217 CCCTCGATT
1 CCCTCGATT
49597226 GTGAAATTAC
Statistics
Matches: 155, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 155 1.00
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCATTTTA
Found at i:49597287 original size:27 final size:27
Alignment explanation
Indices: 49597257--49597346 Score: 144
Period size: 27 Copynumber: 3.3 Consensus size: 27
49597247 CTAAGGATAG
49597257 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
49597284 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * *
49597311 AATTACCGAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
49597338 AATTACCAA
1 AATTACCAA
49597347 TACCCTTGAC
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:49597367 original size:54 final size:53
Alignment explanation
Indices: 49597257--49597372 Score: 135
Period size: 54 Copynumber: 2.2 Consensus size: 53
49597247 CTAAGGATAG
* *
49597257 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCACTAGTTTGTAAAATTACC-AAATACCCCTACTTTGTAA
* * * * *
49597311 AATTACCGAAATACCACTGGTTTGTGAAATTACC-AATACCCTTGACTTTTTAAA
1 AATTACCAAAATACCACTAGTTTGTAAAATTACCAAATACCCCT-ACTTTGT-AA
49597365 AATTACCA
1 AATTACCA
49597373 TTGGTTTACA
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
52 8 0.15
53 5 0.10
54 39 0.75
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.31
Consensus pattern (53 bp):
AATTACCAAAATACCACTAGTTTGTAAAATTACCAAATACCCCTACTTTGTAA
Found at i:49597498 original size:27 final size:27
Alignment explanation
Indices: 49597460--49597524 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
49597450 ACCCCTAATA
* *
49597460 GGTAAAAAGACCGTAA-AGCCCATGTAG
1 GGTAAAATGACCATAATA-CCCATGTAG
* * *
49597487 GGTAAAGTGACCATAATACCCTTGTAT
1 GGTAAAATGACCATAATACCCATGTAG
49597514 GGTAAAATGAC
1 GGTAAAATGAC
49597525 GAATATGGCC
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCATAATACCCATGTAG
Found at i:49598292 original size:16 final size:16
Alignment explanation
Indices: 49598271--49598301 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
49598261 CAAATATGGG
*
49598271 CATGACATTTTGCATA
1 CATGACATATTGCATA
49598287 CATGACATATTGCAT
1 CATGACATATTGCAT
49598302 GGGATATGGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.35
Consensus pattern (16 bp):
CATGACATATTGCATA
Found at i:49598558 original size:42 final size:42
Alignment explanation
Indices: 49598499--49598590 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
49598489 TAGTCTCCCC
49598499 AAATGGGCTTGCATACATTCATTGACATTACATGTGATACTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATACTG
* *
49598541 AAATGGGCTTGCATACATTTATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATACTG
49598583 AAATGGGC
1 AAATGGGC
49598591 CTAAGGGCCA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.32, C:0.14, G:0.21, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATGTGATACTG
Found at i:49598650 original size:31 final size:31
Alignment explanation
Indices: 49598614--49598723 Score: 184
Period size: 31 Copynumber: 3.5 Consensus size: 31
49598604 CGTTTACAAT
49598614 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCTAGTGATATGATTTATGA
49598645 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCTAGTGATATGATTTATGA
* * * *
49598676 ACAGGCTTCGTCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCTAGTGATATGATTTATGA
49598707 AAAGGCTTCGGCCTAGT
1 AAAGGCTTCGGCCTAGT
49598724 AACCGTTAAA
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 72 1.00
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.31
Consensus pattern (31 bp):
AAAGGCTTCGGCCTAGTGATATGATTTATGA
Found at i:49601982 original size:43 final size:43
Alignment explanation
Indices: 49601854--49601984 Score: 185
Period size: 43 Copynumber: 3.0 Consensus size: 43
49601844 ATATTGTACA
*
49601854 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCA
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
* * *
49601897 ATGCC-ACTTTCCCAGACAG-GGTCATACACGTAATCACATATCG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGTAATCACATATCG
*
49601940 ATGCCAACGTCCCAGACGTGGTCTTATATGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
49601983 AT
1 AT
49601985 AATCCTATGT
Statistics
Matches: 76, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
42 3 0.04
43 70 0.92
44 3 0.04
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
Found at i:49612553 original size:40 final size:41
Alignment explanation
Indices: 49612402--49612579 Score: 313
Period size: 41 Copynumber: 4.4 Consensus size: 41
49612392 TTTTACTAAC
*
49612402 ACGCCGCTAAAAACCAGGGCACTAGCGGCGCTTTAGGTAAA
1 ACGCCGCTAAAAACCAGGGCATTAGCGGCGCTTTAGGTAAA
* * *
49612443 ACACCGCTAAAAACCAAGGCATTAGCGGTGCTTTAGGTAAA
1 ACGCCGCTAAAAACCAGGGCATTAGCGGCGCTTTAGGTAAA
49612484 ACGCCGCTAAAAACCAGGGCATTAGCGGCGCTTTAGGTAAA
1 ACGCCGCTAAAAACCAGGGCATTAGCGGCGCTTTAGGTAAA
49612525 ACGCCGCTAAAAA-CAGGGCATTAGCGGCGCTTTAGGTAAA
1 ACGCCGCTAAAAACCAGGGCATTAGCGGCGCTTTAGGTAAA
49612565 ACGCCGCTAAAAACC
1 ACGCCGCTAAAAACC
49612580 CCATAACCCC
Statistics
Matches: 129, Mismatches: 7, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
40 40 0.31
41 89 0.69
ACGTcount: A:0.34, C:0.25, G:0.25, T:0.16
Consensus pattern (41 bp):
ACGCCGCTAAAAACCAGGGCATTAGCGGCGCTTTAGGTAAA
Found at i:49613651 original size:15 final size:15
Alignment explanation
Indices: 49613631--49613662 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
49613621 TTTAATTTAA
*
49613631 AAGATAAATGTATAT
1 AAGATAAATATATAT
49613646 AAGATAAATATATAT
1 AAGATAAATATATAT
49613661 AA
1 AA
49613663 AATATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.31
Consensus pattern (15 bp):
AAGATAAATATATAT
Found at i:49613701 original size:24 final size:24
Alignment explanation
Indices: 49613634--49613701 Score: 75
Period size: 24 Copynumber: 2.8 Consensus size: 24
49613624 AATTTAAAAG
* *
49613634 ATAAATGTATATAAGATAAATATAT
1 ATAAATATATATATGA-AAATATAT
* *
49613659 ATAAA-ATATTATTTTAAAATATAT
1 ATAAATATA-TATATGAAAATATAT
49613683 ATAAATATATATATGAAAA
1 ATAAATATATATATGAAAA
49613702 GTGGTTTAGT
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
24 23 0.66
25 12 0.34
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.38
Consensus pattern (24 bp):
ATAAATATATATATGAAAATATAT
Found at i:49616910 original size:21 final size:20
Alignment explanation
Indices: 49616872--49616911 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
49616862 AATTGTTATA
*
49616872 TTTTGGTTATTTAGATGTTC
1 TTTTGGTTATTTACATGTTC
*
49616892 TTTTGGTCTATTTTCATGTT
1 TTTTGGT-TATTTACATGTT
49616912 TCTATCCAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.12, C:0.07, G:0.17, T:0.62
Consensus pattern (20 bp):
TTTTGGTTATTTACATGTTC
Found at i:49616976 original size:133 final size:133
Alignment explanation
Indices: 49616738--49616989 Score: 477
Period size: 133 Copynumber: 1.9 Consensus size: 133
49616728 TGGTGATTCC
*
49616738 ATTTTGGTTAATTAGATGTTCTTTTGGTCTGCTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
1 ATTTTGGTTAATTAGATGTTCTTTTGGTCTACTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
49616803 TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATATAATAAAATTGT
66 TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATATAATAAAATTGT
49616868 TAT
131 TAT
* *
49616871 ATTTTGGTTATTTAGATGTTCTTTTGGTCTATTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
1 ATTTTGGTTAATTAGATGTTCTTTTGGTCTACTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
49616936 TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATAT
66 TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATAT
49616990 TGTTGAATTC
Statistics
Matches: 116, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
133 116 1.00
ACGTcount: A:0.20, C:0.11, G:0.18, T:0.51
Consensus pattern (133 bp):
ATTTTGGTTAATTAGATGTTCTTTTGGTCTACTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATATAATAAAATTGT
TAT
Found at i:49619087 original size:21 final size:21
Alignment explanation
Indices: 49619058--49619097 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
49619048 GTTTTTATAT
*
49619058 TTTGGTTCAACTTAAGTATTA
1 TTTGATTCAACTTAAGTATTA
49619079 TTTGATTCAACTTAAGTAT
1 TTTGATTCAACTTAAGTAT
49619098 GAATTAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.10, G:0.12, T:0.47
Consensus pattern (21 bp):
TTTGATTCAACTTAAGTATTA
Found at i:49619547 original size:21 final size:21
Alignment explanation
Indices: 49619518--49619557 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
49619508 GTTTTTATAT
*
49619518 TTTGGTTCAACTTAAGTATTA
1 TTTGATTCAACTTAAGTATTA
49619539 TTTGATTCAACTTAAGTAT
1 TTTGATTCAACTTAAGTAT
49619558 GAATTAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.10, G:0.12, T:0.47
Consensus pattern (21 bp):
TTTGATTCAACTTAAGTATTA
Found at i:49620006 original size:21 final size:21
Alignment explanation
Indices: 49619977--49620016 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
49619967 GTTTTTATAT
*
49619977 TTTGGTTCAACTTAAGTATTA
1 TTTGATTCAACTTAAGTATTA
49619998 TTTGATTCAACTTAAGTAT
1 TTTGATTCAACTTAAGTAT
49620017 GAATTAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.10, G:0.12, T:0.47
Consensus pattern (21 bp):
TTTGATTCAACTTAAGTATTA
Found at i:49620094 original size:459 final size:460
Alignment explanation
Indices: 49618679--49620372 Score: 3176
Period size: 460 Copynumber: 3.7 Consensus size: 460
49618669 TTCTCTCCAA
49618679 CCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATAT
1 CCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATAT
* * * *
49618744 CGAGTTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACACCAGGTATAATGAATCTTAAAAA
66 CGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAA
*
49618809 ATTCAAAAAGAATTAAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTAATTTATTTCAA
131 ATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTAATTTATTTCAA
49618874 GTTTACTTATAAAAATTAAACTACGATTCTTTCTTGACATTATTATATTCAAATTACTATTTTGT
196 GTTTACTTATAAAAATTAAACTACGATTCTTTCTTGACATTATTATATTCAAATTACTATTTTGT
49618939 TATATTAAACATGTATGATTTTAATATTTATTATTTTTAAATGTCTTTAAAATTTATAACTAATT
261 TATATTAAACATGTATGATTTTAATATTTATTATTTTTAAATGTCTTTAAAATTTATAACTAATT
49619004 TTTATCAAAATAGTATTATTAATTATTATTTGAAGTATGAATAAGTTTTTATATTTTGGTTCAAC
326 TTTATCAAAATAGTATTATTAATTATTATTTGAAGTATGAATAAGTTTTTATATTTTGGTTCAAC
49619069 TTAAGTATTATTTGATTCAACTTAAGTATGAATTAATTTTATTACCATATATGTAGCTTGCTTGT
391 TTAAGTATTATTTGATTCAACTTAAGTATGAATTAATTTTATTACCATATATGTAGCTTGCTTGT
49619134 CCATT
456 CCATT
*
49619139 CCTTATTTTAAATATTTTAAAGATTCAAAGTATATAAGCTGGAAACCTGACGGGTTGCCTTATAT
1 CCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATAT
*
49619204 CGAGCTGCAAGATATAATGGAACCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAA
66 CGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAA
*
49619269 ATTCAGAAAGAATTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTAATTTATTTCAA
131 ATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTAATTTATTTCAA
49619334 GTTTACTTATAAAAATTAAACTACGATTCTTTCTTGACATTATTATATTCAAATTACTATTTTGT
196 GTTTACTTATAAAAATTAAACTACGATTCTTTCTTGACATTATTATATTCAAATTACTATTTTGT
*
49619399 TATATTAAACATGTATGATTTTAATATTTATTATTTTTAAATGTCTTTAAAATTTATAACTAATC
261 TATATTAAACATGTATGATTTTAATATTTATTATTTTTAAATGTCTTTAAAATTTATAACTAATT
49619464 TTTATCAAAATAGTATTATTAATTATTATTTGAAGTATGAATAAGTTTTTATATTTTGGTTCAAC
326 TTTATCAAAATAGTATTATTAATTATTATTTGAAGTATGAATAAGTTTTTATATTTTGGTTCAAC
49619529 TTAAGTATTATTTGATTCAACTTAAGTATGAATTAATTTTATTACCATATATGTAGCTTGCTTGT
391 TTAAGTATTATTTGATTCAACTTAAGTATGAATTAATTTTATTACCATATATGTAGCTTGCTTGT
49619594 CCATT
456 CCATT
* *
49619599 CCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGAAAACCTAACGGGTTGCCTTATAT
1 CCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATAT
*
49619664 CGAGTTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAA
66 CGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAA
*
49619729 ATTCAAAGAGAATTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTAATTTATTTCAA
131 ATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTAATTTATTTCAA
49619794 GTTTACTTAT-AAAATTAAACTACGATTCTTTCTTGACATTATTATATTCAAATTACTATTTTGT
196 GTTTACTTATAAAAATTAAACTACGATTCTTTCTTGACATTATTATATTCAAATTACTATTTTGT
49619858 TATATTAAACATGTATGATTTTAATATTTATTATTTTTAAATGTCTTTAAAATTTATAACTAATT
261 TATATTAAACATGTATGATTTTAATATTTATTATTTTTAAATGTCTTTAAAATTTATAACTAATT
49619923 TTTATCAAAATAGTATTATTAATTATTATTTGAAGTATGAATAAGTTTTTATATTTTGGTTCAAC
326 TTTATCAAAATAGTATTATTAATTATTATTTGAAGTATGAATAAGTTTTTATATTTTGGTTCAAC
*
49619988 TTAAGTATTATTTGATTCAACTTAAGTATGAATTAATTTTATTACCATATATGTAGCTTGCTTGC
391 TTAAGTATTATTTGATTCAACTTAAGTATGAATTAATTTTATTACCATATATGTAGCTTGCTTGT
49620053 CCATT
456 CCATT
49620058 CCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATAT
1 CCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATAT
49620123 CGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAA
66 CGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAA
* *
49620188 ATTCAAAAAGAATTGAAAAAAGTTTTATCGCTATTGAATATTTATATAACCTTAATTTATTTCCA
131 ATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTAATTTATTTCAA
* *
49620253 GTTTCCTTATAAAAATTAAACTACGATTCTTTCTTGATATTATTATATTCAAATTACTATTTT-T
196 GTTTACTTATAAAAATTAAACTACGATTCTTTCTTGACATTATTATATTCAAATTACTATTTTGT
* *
49620317 TATATTAAACATGTTTGATTTTAATATCGCTATTATTTTTAAATGTCTTTAAAATT
261 TATATTAAACATGTATGATTTTAATAT--TTATTATTTTTAAATGTCTTTAAAATT
49620373 ATTTTATATT
Statistics
Matches: 1203, Mismatches: 28, Indels: 5
0.97 0.02 0.00
Matches are distributed among these distances:
459 477 0.40
460 700 0.58
461 26 0.02
ACGTcount: A:0.36, C:0.12, G:0.11, T:0.42
Consensus pattern (460 bp):
CCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATAT
CGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAA
ATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTAATTTATTTCAA
GTTTACTTATAAAAATTAAACTACGATTCTTTCTTGACATTATTATATTCAAATTACTATTTTGT
TATATTAAACATGTATGATTTTAATATTTATTATTTTTAAATGTCTTTAAAATTTATAACTAATT
TTTATCAAAATAGTATTATTAATTATTATTTGAAGTATGAATAAGTTTTTATATTTTGGTTCAAC
TTAAGTATTATTTGATTCAACTTAAGTATGAATTAATTTTATTACCATATATGTAGCTTGCTTGT
CCATT
Found at i:49620284 original size:919 final size:920
Alignment explanation
Indices: 49618679--49620372 Score: 3203
Period size: 919 Copynumber: 1.8 Consensus size: 920
49618669 TTCTCTCCAA
* *
49618679 CCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATAT
1 CCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGAAAACCTAACGGGTTGCCTTATAT
*
49618744 CGAGTTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACACCAGGTATAATGAATCTTAAAAA
66 CGAGTTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACACCACGTATAATGAATCTTAAAAA
49618809 ATTCAAAAAGAATTAAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTAATTTATTTCAA
131 ATTCAAAAAGAATTAAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTAATTTATTTCAA
49618874 GTTTACTTATAAAAATTAAACTACGATTCTTTCTTGACATTATTATATTCAAATTACTATTTTGT
196 GTTTACTTATAAAAATTAAACTACGATTCTTTCTTGACATTATTATATTCAAATTACTATTTTGT
49618939 TATATTAAACATGTATGATTTTAATATTTATTATTTTTAAATGTCTTTAAAATTTATAACTAATT
261 TATATTAAACATGTATGATTTTAATATTTATTATTTTTAAATGTCTTTAAAATTTATAACTAATT
49619004 TTTATCAAAATAGTATTATTAATTATTATTTGAAGTATGAATAAGTTTTTATATTTTGGTTCAAC
326 TTTATCAAAATAGTATTATTAATTATTATTTGAAGTATGAATAAGTTTTTATATTTTGGTTCAAC
*
49619069 TTAAGTATTATTTGATTCAACTTAAGTATGAATTAATTTTATTACCATATATGTAGCTTGCTTGT
391 TTAAGTATTATTTGATTCAACTTAAGTATGAATTAATTTTATTACCATATATGTAGCTTGCTTGC
49619134 CCATTCCTTATTTTAAATATTTTAAAGATTCAAAGTATATAAGCTGGAAACCTGACGGGTTGCCT
456 CCATTCCTTATTTTAAATATTTTAAAGATTCAAAGTATATAAGCTGGAAACCTGACGGGTTGCCT
49619199 TATATCGAGCTGCAAGATATAATGGAACCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTT
521 TATATCGAGCTGCAAGATATAATGGAACCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTT
*
49619264 AAAAAATTCAGAAAGAATTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTAATTTAT
586 AAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTAATTTAT
49619329 TTCAAGTTTACTTATAAAAATTAAACTACGATTCTTTCTTGACATTATTATATTCAAATTACTAT
651 TTCAAGTTTACTTATAAAAATTAAACTACGATTCTTTCTTGACATTATTATATTCAAATTACTAT
*
49619394 TTTGTTATATTAAACATGTATGATTTTAATAT-TTATTATTTTTAAATGTCTTTAAAATTTATAA
716 TTT-TTATATTAAACATGTATGATTTTAATATCCTATTATTTTTAAATGTCTTTAAAATTTATAA
49619458 CTAATCTTTATCAAAATAGTATTATTAATTATTATTTGAAGTATGAATAAGTTTTTATATTTTGG
780 CTAATCTTTATCAAAATAGTATTATTAATTATTATTTGAAGTATGAATAAGTTTTTATATTTTGG
49619523 TTCAACTTAAGTATTATTTGATTCAACTTAAGTATGAATTAATTTTATTACCATATATGTAGCTT
845 TTCAACTTAAGTATTATTTGATTCAACTTAAGTATGAATTAATTTTATTACCATATATGTAGCTT
49619588 GCTTGTCCATT
910 GCTTGTCCATT
49619599 CCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGAAAACCTAACGGGTTGCCTTATAT
1 CCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGAAAACCTAACGGGTTGCCTTATAT
* *
49619664 CGAGTTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAA
66 CGAGTTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACACCACGTATAATGAATCTTAAAAA
* *
49619729 ATTCAAAGAGAATTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTAATTTATTTCAA
131 ATTCAAAAAGAATTAAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTAATTTATTTCAA
49619794 GTTTACTTAT-AAAATTAAACTACGATTCTTTCTTGACATTATTATATTCAAATTACTATTTTGT
196 GTTTACTTATAAAAATTAAACTACGATTCTTTCTTGACATTATTATATTCAAATTACTATTTTGT
49619858 TATATTAAACATGTATGATTTTAATATTTATTATTTTTAAATGTCTTTAAAATTTATAACTAATT
261 TATATTAAACATGTATGATTTTAATATTTATTATTTTTAAATGTCTTTAAAATTTATAACTAATT
49619923 TTTATCAAAATAGTATTATTAATTATTATTTGAAGTATGAATAAGTTTTTATATTTTGGTTCAAC
326 TTTATCAAAATAGTATTATTAATTATTATTTGAAGTATGAATAAGTTTTTATATTTTGGTTCAAC
49619988 TTAAGTATTATTTGATTCAACTTAAGTATGAATTAATTTTATTACCATATATGTAGCTTGCTTGC
391 TTAAGTATTATTTGATTCAACTTAAGTATGAATTAATTTTATTACCATATATGTAGCTTGCTTGC
*
49620053 CCATTCCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCT
456 CCATTCCTTATTTTAAATATTTTAAAGATTCAAAGTATATAAGCTGGAAACCTGACGGGTTGCCT
*
49620118 TATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTT
521 TATATCGAGCTGCAAGATATAATGGAACCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTT
*
49620183 AAAAAATTCAAAAAGAATTGAAAAAAGTTTTATCGCTATTGAATATTTATATAACCTTAATTTAT
586 AAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTAATTTAT
* * *
49620248 TTCCAGTTTCCTTATAAAAATTAAACTACGATTCTTTCTTGATATTATTATATTCAAATTACTAT
651 TTCAAGTTTACTTATAAAAATTAAACTACGATTCTTTCTTGACATTATTATATTCAAATTACTAT
*
49620313 TTTTTATATTAAACATGTTTGATTTTAATATCGCTATTATTTTTAAATGTCTTTAAAATT
716 TTTTTATATTAAACATGTATGATTTTAATATC-CTATTATTTTTAAATGTCTTTAAAATT
49620373 ATTTTATATT
Statistics
Matches: 755, Mismatches: 17, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
918 27 0.04
919 504 0.67
920 224 0.30
ACGTcount: A:0.36, C:0.12, G:0.11, T:0.42
Consensus pattern (920 bp):
CCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGAAAACCTAACGGGTTGCCTTATAT
CGAGTTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACACCACGTATAATGAATCTTAAAAA
ATTCAAAAAGAATTAAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTAATTTATTTCAA
GTTTACTTATAAAAATTAAACTACGATTCTTTCTTGACATTATTATATTCAAATTACTATTTTGT
TATATTAAACATGTATGATTTTAATATTTATTATTTTTAAATGTCTTTAAAATTTATAACTAATT
TTTATCAAAATAGTATTATTAATTATTATTTGAAGTATGAATAAGTTTTTATATTTTGGTTCAAC
TTAAGTATTATTTGATTCAACTTAAGTATGAATTAATTTTATTACCATATATGTAGCTTGCTTGC
CCATTCCTTATTTTAAATATTTTAAAGATTCAAAGTATATAAGCTGGAAACCTGACGGGTTGCCT
TATATCGAGCTGCAAGATATAATGGAACCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTT
AAAAAATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTAATTTAT
TTCAAGTTTACTTATAAAAATTAAACTACGATTCTTTCTTGACATTATTATATTCAAATTACTAT
TTTTTATATTAAACATGTATGATTTTAATATCCTATTATTTTTAAATGTCTTTAAAATTTATAAC
TAATCTTTATCAAAATAGTATTATTAATTATTATTTGAAGTATGAATAAGTTTTTATATTTTGGT
TCAACTTAAGTATTATTTGATTCAACTTAAGTATGAATTAATTTTATTACCATATATGTAGCTTG
CTTGTCCATT
Found at i:49625247 original size:14 final size:15
Alignment explanation
Indices: 49625228--49625260 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
49625218 GAGAGACAAT
49625228 AAAAGAAT-TTTGAA
1 AAAAGAATATTTGAA
*
49625242 AAAAGAATATTTTAA
1 AAAAGAATATTTGAA
49625257 AAAA
1 AAAA
49625261 CCCATAAGCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.64, C:0.00, G:0.09, T:0.27
Consensus pattern (15 bp):
AAAAGAATATTTGAA
Found at i:49626541 original size:43 final size:43
Alignment explanation
Indices: 49626478--49626875 Score: 210
Period size: 43 Copynumber: 9.3 Consensus size: 43
49626468 CTGAGCAAAT
* *
49626478 TAGCGGCGTTTTTTACAAAAGCGCCGCTAAAAGTACAGGTCTA
1 TAGCGGCGTTTTTTATAAAAGCGCCGCTAAAAGTACTGGTCTA
*
49626521 TAGCGGCGTTTTTTATAAAAGCGCCGCT-AAAGTTCTTGGTCTA
1 TAGCGGCGTTTTTTATAAAAGCGCCGCTAAAAGTAC-TGGTCTA
* * *
49626564 TAGCGGCGTTTTTTA-AATAAGCGCCGCTAAAGGTCCTGGTCTT
1 TAGCGGCGTTTTTTATAA-AAGCGCCGCTAAAAGTACTGGTCTA
* * * * * *
49626607 TGGCGGCG-CTTTTATAAAAAACGCCGCT-ATAGAACT-GTACTTT
1 TAGCGGCGTTTTTTAT-AAAAGCGCCGCTAAAAGTACTGGT-C-TA
* * ** * * ** *
49626650 TAGCGGCACTTTTTTA-AAAA-TGCCGCTGTAGGTCCTCTTCTT
1 TAGCGGC-GTTTTTTATAAAAGCGCCGCTAAAAGTACTGGTCTA
* * * * * * *
49626692 TGGTGGCGGTTTTT-TAAGAGCGCCGCTAAAGGTCCTGGTCTT
1 TAGCGGCGTTTTTTATAAAAGCGCCGCTAAAAGTACTGGTCTA
* * * * * * *
49626734 TAGCGGCG-CTTTTATAAAAAACGCTGCTATAGGTCCTGGTCTT
1 TAGCGGCGTTTTTTAT-AAAAGCGCCGCTAAAAGTACTGGTCTA
* ** * * *
49626777 TAGCGGCATTTTTT-TATGAGCGCCGCTAAAGGTCCTGGTCTT
1 TAGCGGCGTTTTTTATAAAAGCGCCGCTAAAAGTACTGGTCTA
* * * *
49626819 TAGCGGCGCTTTTGTA-AAAAACGCTGCT-AAAG-ATCATGGTCTT
1 TAGCGGCG-TTTTTTATAAAAGCGCCGCTAAAAGTA-C-TGGTCTA
49626862 TAGCGGCGTTTTTT
1 TAGCGGCGTTTTTT
49626876 TCTAAAAAAC
Statistics
Matches: 279, Mismatches: 56, Indels: 41
0.74 0.15 0.11
Matches are distributed among these distances:
41 14 0.05
42 93 0.33
43 155 0.56
44 12 0.04
45 5 0.02
ACGTcount: A:0.22, C:0.20, G:0.24, T:0.33
Consensus pattern (43 bp):
TAGCGGCGTTTTTTATAAAAGCGCCGCTAAAAGTACTGGTCTA
Found at i:49626802 original size:85 final size:84
Alignment explanation
Indices: 49626477--49626876 Score: 381
Period size: 85 Copynumber: 4.7 Consensus size: 84
49626467 ACTGAGCAAA
* * * * * *
49626477 TTAGCGGCGTTTTTTACAAAAGCGCCGCTAAAAGTACAGGTCTATAGCGGCGTTTTTTATAAAAG
1 TTAGCGGCGCTTTTTA-AAAAACGCCGCTAAAGGTCCTGGTCTTTAGCGGCGTTTTTT-TAAAAG
* *
49626542 CGCCGCTAAAGTTCTTGGTCT
64 CGCCGCTAAAGGTCCTGGTCT
* * * * * * *
49626563 ATAGCGGCGTTTTTTAAATAAGCGCCGCTAAAGGTCCTGGTCTTTGGCGGCGCTTTTATAAAAAA
1 TTAGCGGCGCTTTTTAAA-AAACGCCGCTAAAGGTCCTGGTCTTTAGCGGCG-TTTTTTTAAAAG
* **
49626628 CGCCGCTATA-GAACT-GTACTT
64 CGCCGCTAAAGGTCCTGGT-C-T
* * * ** ** * * * *
49626649 TTAGCGGCACTTTTTTAAAAATGCCGCTGTAGGTCCTCTTCTTTGGTGGCGGTTTTTTAAGAGCG
1 TTAGCGGCGCTTTTTAAAAAACGCCGCTAAAGGTCCTGGTCTTTAGCGGCGTTTTTTTAAAAGCG
49626714 CCGCTAAAGGTCCTGGTCT
66 CCGCTAAAGGTCCTGGTCT
* * * **
49626733 TTAGCGGCGCTTTTATAAAAAACGCTGCTATAGGTCCTGGTCTTTAGCGGCATTTTTTTATGAGC
1 TTAGCGGCGCTTTT-TAAAAAACGCCGCTAAAGGTCCTGGTCTTTAGCGGCGTTTTTTTAAAAGC
49626798 GCCGCTAAAGGTCCTGGTCT
65 GCCGCTAAAGGTCCTGGTCT
* * *
49626818 TTAGCGGCGCTTTTGTAAAAAACGCTGCTAAAGATCATGGTCTTTAGCGGCGTTTTTTT
1 TTAGCGGCGCTTTT-TAAAAAACGCCGCTAAAGGTCCTGGTCTTTAGCGGCGTTTTTTT
49626877 CTAAAAAACG
Statistics
Matches: 257, Mismatches: 50, Indels: 15
0.80 0.16 0.05
Matches are distributed among these distances:
84 32 0.12
85 147 0.57
86 73 0.28
87 5 0.02
ACGTcount: A:0.22, C:0.20, G:0.24, T:0.34
Consensus pattern (84 bp):
TTAGCGGCGCTTTTTAAAAAACGCCGCTAAAGGTCCTGGTCTTTAGCGGCGTTTTTTTAAAAGCG
CCGCTAAAGGTCCTGGTCT
Found at i:49626802 original size:127 final size:128
Alignment explanation
Indices: 49626521--49626889 Score: 370
Period size: 127 Copynumber: 2.9 Consensus size: 128
49626511 TACAGGTCTA
* * * * * *
49626521 TAGCGGC-GTTTTTTATAAAAGCGCCGCTAAAGTTCTTGGTCTATAGCGGCG-TTTTTTAAATAA
1 TAGCGGCACTTTTTTA-AAAA-CGCCGCTAAAGGTCCTCGTCTTTAGCGGCGCTTTTGTAAA-AA
*
49626584 GCGCCGCTAAAGGTCCTGGTCTTTGGCGGCGCTTTTATAAAAAACGCCGCTATAGAACTGTACTT
63 GCGCCGCTAAAGGTCCTGGTCTTTAGCGGCGCTTTTATAAAAAACGCCGCTATAGAACTGTACTT
49626649 T
128 T
* ** * * * * * *
49626650 TAGCGGCACTTTTTTAAAAATGCCGCTGTAGGTCCTCTTCTTTGGTGGCGGTTTT-TTAAGAGCG
1 TAGCGGCACTTTTTTAAAAACGCCGCTAAAGGTCCTCGTCTTTAGCGGCGCTTTTGTAAAAAGCG
* **
49626714 CCGCTAAAGGTCCTGGTCTTTAGCGGCGCTTTTATAAAAAACGCTGCTATAGGTCCTGGT-C-TT
66 CCGCTAAAGGTCCTGGTCTTTAGCGGCGCTTTTATAAAAAACGCCGCTATA-GAACT-GTACTTT
* ** * * *
49626777 TAGCGGCATTTTTTTATGAGCGCCGCTAAAGGTCCTGGTCTTTAGCGGCGCTTTTGTAAAAAACG
1 TAGCGGCACTTTTTTAAAAACGCCGCTAAAGGTCCTCGTCTTTAGCGGCGCTTTTGTAAAAAGCG
* * * * *
49626842 CTGCTAAAGATCATGGTCTTTAGCGGCGTTTTTTTCTAAAAAACGCCG
66 CCGCTAAAGGTCCTGGTCTTTAGCGGCG--CTTTTATAAAAAACGCCG
49626890 TGAACTTTTG
Statistics
Matches: 195, Mismatches: 38, Indels: 13
0.79 0.15 0.05
Matches are distributed among these distances:
127 98 0.50
128 58 0.30
129 17 0.09
130 22 0.11
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.33
Consensus pattern (128 bp):
TAGCGGCACTTTTTTAAAAACGCCGCTAAAGGTCCTCGTCTTTAGCGGCGCTTTTGTAAAAAGCG
CCGCTAAAGGTCCTGGTCTTTAGCGGCGCTTTTATAAAAAACGCCGCTATAGAACTGTACTTT
Found at i:49635854 original size:24 final size:24
Alignment explanation
Indices: 49635803--49636042 Score: 356
Period size: 24 Copynumber: 10.0 Consensus size: 24
49635793 GCTTTATCAT
*
49635803 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
49635828 ATAACTGGGGAAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
49635852 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
49635876 ATAACTGGGGCATAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
49635900 ATAACTGGGGTATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
49635924 ATAACTGGGGCATAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
*
49635948 ATAACTGGGGCATAATCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
49635972 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
49635996 ATAATTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
49636020 ATCACTGGAGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
49636043 GCACTTCCTC
Statistics
Matches: 195, Mismatches: 19, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
24 183 0.94
25 12 0.06
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:49636158 original size:20 final size:20
Alignment explanation
Indices: 49636093--49636149 Score: 114
Period size: 20 Copynumber: 2.9 Consensus size: 20
49636083 TATGAATACC
49636093 TCATGTGCATATCATACGTG
1 TCATGTGCATATCATACGTG
49636113 TCATGTGCATATCATACGTG
1 TCATGTGCATATCATACGTG
49636133 TCATGTGCATATCATAC
1 TCATGTGCATATCATAC
49636150 ATACCATGTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACGTG
Found at i:49636223 original size:25 final size:25
Alignment explanation
Indices: 49636195--49636244 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
49636185 ATATATAAAC
* * *
49636195 CCTAGGGGTATAATGGTCATTTTCA
1 CCTAGGGGCAAAACGGTCATTTTCA
49636220 CCTAGGGGCAAAACGGTCATTTTCA
1 CCTAGGGGCAAAACGGTCATTTTCA
49636245 TGTTATAAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTCA
Found at i:49644981 original size:15 final size:16
Alignment explanation
Indices: 49644942--49644982 Score: 59
Period size: 15 Copynumber: 2.7 Consensus size: 16
49644932 TTTCAGTCTG
49644942 ATTGGATTT-TCTTAT
1 ATTGGATTTCTCTTAT
49644957 ATTGGATTTCT-TTAT
1 ATTGGATTTCTCTTAT
*
49644972 GTTGGATTTCT
1 ATTGGATTTCT
49644983 ATATTCTAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 23 0.96
16 1 0.04
ACGTcount: A:0.17, C:0.07, G:0.17, T:0.59
Consensus pattern (16 bp):
ATTGGATTTCTCTTAT
Found at i:49647771 original size:50 final size:50
Alignment explanation
Indices: 49647694--49647922 Score: 248
Period size: 50 Copynumber: 4.6 Consensus size: 50
49647684 ATTGTAAGAA
* *
49647694 CACATGTGTAGTACTAAGTGCAGGCTACTAGGTGTAGCAGATAGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
* * * * * * *
49647744 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGACAACTTCA-AT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TAGTT-AGGT
* * *
49647795 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
* * * * *
49647845 CACGTGTATGGTACTAAGTGCAGGCTACTACGTGTACCGGATTGTT-GGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
*
49647894 CGCATGTGTAGTACTAAGTGCTA-GCTACT
1 CACATGTGTAGTACTAAGTGC-AGGCTACT
49647923 CTGCGTACTA
Statistics
Matches: 148, Mismatches: 27, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
49 27 0.18
50 81 0.55
51 39 0.26
52 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.29
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
Found at i:49647882 original size:101 final size:101
Alignment explanation
Indices: 49647698--49647882 Score: 289
Period size: 101 Copynumber: 1.8 Consensus size: 101
49647688 TAAGAACACA
* * *
49647698 TGTGTAGTACTAAGTGCAGGCTACTAGGTGTAGCAGATAGTTAGGTCGCATGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAGCAGATAGTTAGGTCACATGTATAGTACTAAGT
*
49647763 GCAGGCTACTATGCGTACCCGACAACTTCAATCACG
66 GCAGGCTACTACGCGTACCCGACAACTTCAATCACG
* * * *
49647799 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTATGGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAGCAGATAGTTAGGTCACATGTATAGTACTAAGT
*
49647864 GCAGGCTACTACGTGTACC
66 GCAGGCTACTACGCGTACC
49647883 GGATTGTTGG
Statistics
Matches: 75, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
101 75 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (101 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTAGCAGATAGTTAGGTCACATGTATAGTACTAAGT
GCAGGCTACTACGCGTACCCGACAACTTCAATCACG
Found at i:49654221 original size:44 final size:43
Alignment explanation
Indices: 49654169--49654327 Score: 164
Period size: 43 Copynumber: 3.7 Consensus size: 43
49654159 TATGTGTTAT
*
49654169 CATGTAAGACCACATCTGGGACATTGGCATCGATTTGTGATTTA
1 CATGTAAGACCACGTCTGGGACATTGGCATCGATTT-TGATTTA
* * *
49654213 CGTGTAAGACCATGTCTGGGACATTGGCATCG-TATATGATTT-
1 CATGTAAGACCACGTCTGGGACATTGGCATCGAT-TTTGATTTA
* * * *
49654255 CATGCAAGACC-CTGTCTAGGACAGTGACATCGATATTTGA-TTA
1 CATGTAAGACCAC-GTCTGGGACATTGGCATCGAT-TTTGATTTA
* *
49654298 CATGAAAGACCACGTCTGGGACGTTGGCAT
1 CATGTAAGACCACGTCTGGGACATTGGCAT
49654328 TGTACAAGCT
Statistics
Matches: 94, Mismatches: 16, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
42 27 0.29
43 36 0.38
44 31 0.33
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (43 bp):
CATGTAAGACCACGTCTGGGACATTGGCATCGATTTTGATTTA
Found at i:49658635 original size:25 final size:26
Alignment explanation
Indices: 49658606--49658658 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
49658596 ATGAACAAGA
*
49658606 ATTTAAATTTGAAA-GTCAAAATTTT
1 ATTTAAATATGAAATGTCAAAATTTT
*
49658631 ATTTAAATATGAAATTTTCAAAATTTT
1 ATTTAAATATGAAA-TGTCAAAATTTT
49658658 A
1 A
49658659 CTTATATTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 13 0.54
27 11 0.46
ACGTcount: A:0.45, C:0.04, G:0.06, T:0.45
Consensus pattern (26 bp):
ATTTAAATATGAAATGTCAAAATTTT
Found at i:49660292 original size:13 final size:14
Alignment explanation
Indices: 49660264--49660297 Score: 52
Period size: 13 Copynumber: 2.4 Consensus size: 14
49660254 AATAAAAACA
49660264 CCAACAATTCAAAAG
1 CCAA-AATTCAAAAG
49660279 CCAAAATT-AAAAG
1 CCAAAATTCAAAAG
49660292 CCAAAA
1 CCAAAA
49660298 AGTCCAAAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 11 0.58
14 4 0.21
15 4 0.21
ACGTcount: A:0.59, C:0.24, G:0.06, T:0.12
Consensus pattern (14 bp):
CCAAAATTCAAAAG
Found at i:49662801 original size:22 final size:23
Alignment explanation
Indices: 49662773--49662816 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
49662763 TTATCCCCAC
*
49662773 GTGGAGTGTAG-GGCTGGATGGA
1 GTGGAGTGTAGAGGATGGATGGA
49662795 GTGGAGTGTAGAGGATGGATGG
1 GTGGAGTGTAGAGGATGGATGG
49662817 GTAGGATCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.20, C:0.02, G:0.55, T:0.23
Consensus pattern (23 bp):
GTGGAGTGTAGAGGATGGATGGA
Found at i:49662909 original size:33 final size:32
Alignment explanation
Indices: 49662837--49662935 Score: 94
Period size: 33 Copynumber: 3.0 Consensus size: 32
49662827 TGTATGCATT
49662837 TATGATACTGTACTGAGATGGGCTAAGGCCCA
1 TATGATACTGTACTGAGATGGGCTAAGGCCCA
*
49662869 TACTGATACTGATACTGTA-TTGGGCTAAGGCCACA
1 TA-TGATACTG-TACTG-AGATGGGCTAAGGCC-CA
* * * *
49662904 T-TGATATTGCGACTGATATGGGCTTAGGCCCA
1 TATGATACTG-TACTGAGATGGGCTAAGGCCCA
49662936 ATTGTGTAAC
Statistics
Matches: 56, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
32 5 0.09
33 30 0.54
34 17 0.30
35 4 0.07
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (32 bp):
TATGATACTGTACTGAGATGGGCTAAGGCCCA
Found at i:49667485 original size:33 final size:34
Alignment explanation
Indices: 49667448--49667552 Score: 110
Period size: 34 Copynumber: 3.1 Consensus size: 34
49667438 TAATTTTTAA
*
49667448 AATTAAAACTAATA-AAAAAT-GTTATAATATTTG
1 AATTAAAACT-ATACAAAAATAATTATAATATTTG
* *
49667481 AATTAAAAGTGTACAAAAATAATTATAATATTTG
1 AATTAAAACTATACAAAAATAATTATAATATTTG
* * *
49667515 AATCAAAAGTGTACAAAAATAATTATGAA-ATTT-
1 AATTAAAACTATACAAAAATAATTAT-AATATTTG
49667548 AATTA
1 AATTA
49667553 TATTAAAAAA
Statistics
Matches: 64, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
32 2 0.03
33 19 0.30
34 41 0.64
35 2 0.03
ACGTcount: A:0.54, C:0.04, G:0.08, T:0.34
Consensus pattern (34 bp):
AATTAAAACTATACAAAAATAATTATAATATTTG
Found at i:49667507 original size:34 final size:34
Alignment explanation
Indices: 49667469--49667552 Score: 136
Period size: 34 Copynumber: 2.5 Consensus size: 34
49667459 ATAAAAAATG
49667469 TTATAATATTTGAATTAAAAGTGTACAAAAATAA
1 TTATAATATTTGAATTAAAAGTGTACAAAAATAA
*
49667503 TTATAATATTTGAATCAAAAGTGTACAAAAATAA
1 TTATAATATTTGAATTAAAAGTGTACAAAAATAA
49667537 TTATGAA-ATTT-AATTA
1 TTAT-AATATTTGAATTA
49667553 TATTAAAAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
33 4 0.09
34 41 0.87
35 2 0.04
ACGTcount: A:0.51, C:0.04, G:0.08, T:0.37
Consensus pattern (34 bp):
TTATAATATTTGAATTAAAAGTGTACAAAAATAA
Found at i:49673252 original size:20 final size:20
Alignment explanation
Indices: 49673229--49673280 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 20
49673219 ATTTATATTA
49673229 ATTTAGTCATTTTT-ATTTTT
1 ATTTAGT-ATTTTTGATTTTT
* *
49673249 ATTTCAATATTTTTGTTTTTT
1 ATTT-AGTATTTTTGATTTTT
49673270 ATTTAGT-TTTT
1 ATTTAGTATTTT
49673281 ACATTTTAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
19 4 0.15
20 12 0.44
21 11 0.41
ACGTcount: A:0.19, C:0.04, G:0.06, T:0.71
Consensus pattern (20 bp):
ATTTAGTATTTTTGATTTTT
Found at i:49676070 original size:14 final size:15
Alignment explanation
Indices: 49676051--49676092 Score: 50
Period size: 14 Copynumber: 2.8 Consensus size: 15
49676041 CCCGAGTGCT
49676051 TTTATTTTTATTT-A
1 TTTATTTTTATTTCA
*
49676065 TTTATTTTAATTTCA
1 TTTATTTTTATTTCA
*
49676080 TGTTATTATTATT
1 T-TTATTTTTATT
49676093 CTTTTTTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
14 12 0.52
15 2 0.09
16 9 0.39
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.71
Consensus pattern (15 bp):
TTTATTTTTATTTCA
Found at i:49677137 original size:19 final size:20
Alignment explanation
Indices: 49677115--49677157 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
49677105 TGAATTTTAG
*
49677115 TATTAGTTTTTA-TTACTAT
1 TATTAGTTATTATTTACTAT
*
49677134 TATT-GTTATTATTTAGTAT
1 TATTAGTTATTATTTACTAT
49677153 TATTA
1 TATTA
49677158 TACCTATTAC
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.28, C:0.02, G:0.07, T:0.63
Consensus pattern (20 bp):
TATTAGTTATTATTTACTAT
Found at i:49679512 original size:16 final size:17
Alignment explanation
Indices: 49679475--49679513 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
49679465 CCCGTTGATC
* *
49679475 CTAACACATTTTTTTCT
1 CTAACCCATTTTTTTAT
49679492 CTAACCCATTTTTTTAT
1 CTAACCCATTTTTTTAT
49679509 -TAACC
1 CTAACC
49679514 TGTGACCCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 5 0.25
17 15 0.75
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.49
Consensus pattern (17 bp):
CTAACCCATTTTTTTAT
Found at i:49683481 original size:93 final size:93
Alignment explanation
Indices: 49683368--49683539 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
49683358 CGCCCATAAG
*
49683368 CGAACTCGGACTCAACTCAACGAGCTCAGACGTTCACATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
*
49683433 ACGAGTTTGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * *
49683461 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
49683526 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
49683540 TCAATCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:49683534 original size:46 final size:46
Alignment explanation
Indices: 49683361--49683536 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
49683351 TGTAACCCGC
* * *
49683361 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGACGTTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
* *
49683407 CCATAAGTGAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCACAT
* *
49683457 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
*
49683500 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
49683537 TGCTCAATCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.56
47 28 0.25
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
Found at i:49699238 original size:41 final size:41
Alignment explanation
Indices: 49699181--49699264 Score: 134
Period size: 41 Copynumber: 2.0 Consensus size: 41
49699171 GATCTCAAAT
49699181 CACTGTTTCTGACACCACTGAAAATTGGGCTGTTACAATTC
1 CACTGTTTCTGACACCACTGAAAATTGGGCTGTTACAATTC
* *
49699222 CACTGTTT-TCGACACCACTGAAAATTGGGTTGTTATAATTC
1 CACTGTTTCT-GACACCACTGAAAATTGGGCTGTTACAATTC
49699263 CA
1 CA
49699265 TCTCTGTTAA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
40 1 0.03
41 39 0.98
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (41 bp):
CACTGTTTCTGACACCACTGAAAATTGGGCTGTTACAATTC
Found at i:49702752 original size:57 final size:57
Alignment explanation
Indices: 49702686--49702797 Score: 181
Period size: 57 Copynumber: 2.0 Consensus size: 57
49702676 TTGTTATGTT
* *
49702686 TGTTGGGACGTTAGTTGCAAGTATGATTT-TCGACTCTATGAGTATTTGAAAATCTTC
1 TGTTGGGACGTTAGTTCCAAGTATGCTTTCT-GACTCTATGAGTATTTGAAAATCTTC
*
49702743 TGTTGGGACGTTAGTTCCAAGTATGCTTTCTGACTCTGTGAGTATTTGAAAATCT
1 TGTTGGGACGTTAGTTCCAAGTATGCTTTCTGACTCTATGAGTATTTGAAAATCT
49702798 GTTGCGCTAC
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
57 50 0.98
58 1 0.02
ACGTcount: A:0.23, C:0.13, G:0.23, T:0.40
Consensus pattern (57 bp):
TGTTGGGACGTTAGTTCCAAGTATGCTTTCTGACTCTATGAGTATTTGAAAATCTTC
Found at i:49709660 original size:27 final size:27
Alignment explanation
Indices: 49709629--49710122 Score: 353
Period size: 27 Copynumber: 18.4 Consensus size: 27
49709619 AGACCCTGGT
*
49709629 TTGTAAAATTACCAAAATACCCTTGGA
1 TTGTAAAATTACCAAAATACCCTTAGA
* * **
49709656 TTGTAAAATTATCGAAATACCC-CCGA
1 TTGTAAAATTACCAAAATACCCTTAGA
*
49709682 TTTGTAAAA-T--CGAAATACCCTCT-GA
1 -TTGTAAAATTACCAAAATACCCT-TAGA
**
49709707 TTGTAAAATTACCAAAATACCCTCGGA
1 TTGTAAAATTACCAAAATACCCTTAGA
*** *
49709734 TTGTAAAATTATTGAAATACCCATA-A
1 TTGTAAAATTACCAAAATACCCTTAGA
* * * *
49709760 TTTGTAAAATTATCGAAGTACCCCTAG-
1 -TTGTAAAATTACCAAAATACCCTTAGA
* * *
49709787 TTGTAAAATTACTAAAATACCCTTGGT
1 TTGTAAAATTACCAAAATACCCTTAGA
**** * *
49709814 TTGTAAAATTATTGGAATACCCTCAAA
1 TTGTAAAATTACCAAAATACCCTTAGA
** **
49709841 TTGTAAAATTACTGAAATACCCCCA-A
1 TTGTAAAATTACCAAAATACCCTTAGA
* * * *
49709867 TTTATAAAATTACAAAAATACCCTCAGT
1 -TTGTAAAATTACCAAAATACCCTTAGA
*
49709895 TTGTAAAATTACCAAAATA-CCTTCTGA
1 TTGTAAAATTACCAAAATACCCTT-AGA
** *
49709922 TTGTAAAATTATTAAAATACCCTTTGA
1 TTGTAAAATTACCAAAATACCCTTAGA
* * *
49709949 TTGTAAAATTACCGAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCTTAGA
* * * *
49709976 TTATAAAATTACCAAAAGACTCC-CAGT
1 TTGTAAAATTACCAAAATAC-CCTTAGA
* * *
49710003 TTGTTAAATTATCGAAATA-CCTTCAGA
1 TTGTAAAATTACCAAAATACCCTT-AGA
* * *
49710030 TTGTAAAATTACTAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCTTAGA
* * *
49710057 TTGTAAAATTACCGAAATAGCCTCAGA
1 TTGTAAAATTACCAAAATACCCTTAGA
* *
49710084 TTATAAAATTACCAAAATACCCTTAGT
1 TTGTAAAATTACCAAAATACCCTTAGA
49710111 TTGTAAAATTAC
1 TTGTAAAATTAC
49710123 TATTTTGCCC
Statistics
Matches: 370, Mismatches: 79, Indels: 36
0.76 0.16 0.07
Matches are distributed among these distances:
24 18 0.05
25 5 0.01
26 28 0.08
27 310 0.84
28 9 0.02
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCTTAGA
Found at i:49710124 original size:81 final size:80
Alignment explanation
Indices: 49709629--49710122 Score: 425
Period size: 81 Copynumber: 6.2 Consensus size: 80
49709619 AGACCCTGGT
* * * * * *
49709629 TTGTAAAATTACCAAAATACCCTTGGATTGTAAAATTATCGAAATACCCCCGATTTGT-AAA--A
1 TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAATACCTCAGA-TTGTAAAATTA
49709691 TCGAAATACCCTCT-GA
65 TCGAAATACCCT-TAGA
* * ** *
49709707 TTGTAAAATTACCAAAATA-CCCTCGGATTGTAAAATTATTGAAATACC-CATAATTTGTAAAAT
1 TTGTAAAATTACCAAAATACCCCT-AGTTTGTAAAATTACCGAAATACCTCA-GA-TTGTAAAAT
* *
49709770 TATCGAAGTACCCCTAG-
63 TATCGAAATACCCTTAGA
* * * ** * *
49709787 TTGTAAAATTACTAAAATACCCTTGGTTTGTAAAATTATTGGAATACCCTCAAATTGTAAAATTA
1 TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAATA-CCTCAGATTGTAAAATTA
**
49709852 -CTGAAATACCCCCA-A
65 TC-GAAATACCCTTAGA
* * * *
49709867 TTTATAAAATTACAAAAATA-CCCTCAGTTTGTAAAATTACCAAAATACCTTCTGATTGTAAAAT
1 -TTGTAAAATTACCAAAATACCCCT-AGTTTGTAAAATTACCGAAATACC-TCAGATTGTAAAAT
** *
49709931 TATTAAAATACCCTTTGA
63 TATCGAAATACCCTTAGA
* * * * * * *
49709949 TTGTAAAATTACCGAAATACCCCTAGTTTATAAAATTACCAAAAGACTCCCAGTTTGTTAAATTA
1 TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAATAC-CTCAGATTGTAAAATTA
49710014 TCGAAATA-CCTTCAGA
65 TCGAAATACCCTT-AGA
* *
49710030 TTGTAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCGAAATAGCCTCAGATTATAAAATTA
1 TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAATA-CCTCAGATTGTAAAATTA
* * *
49710095 CCAAAATACCCTTAGT
65 TCGAAATACCCTTAGA
49710111 TTGTAAAATTAC
1 TTGTAAAATTAC
49710123 TATTTTGCCC
Statistics
Matches: 344, Mismatches: 51, Indels: 39
0.79 0.12 0.09
Matches are distributed among these distances:
77 4 0.01
78 48 0.14
79 4 0.01
80 69 0.20
81 206 0.60
82 13 0.04
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (80 bp):
TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAATACCTCAGATTGTAAAATTAT
CGAAATACCCTTAGA
Found at i:49724609 original size:30 final size:30
Alignment explanation
Indices: 49724573--49724634 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
49724563 CAAGTAGCCG
*
49724573 AAGCTAGTTTAAATCGCACACTTAGTGCCA
1 AAGCTAGTTTAAATCGCACACCTAGTGCCA
49724603 AAGCTAGTTTAAATCGCACACCTAGTGCCA
1 AAGCTAGTTTAAATCGCACACCTAGTGCCA
49724633 AA
1 AA
49724635 ACTTTCGATT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.24
Consensus pattern (30 bp):
AAGCTAGTTTAAATCGCACACCTAGTGCCA
Found at i:49726146 original size:20 final size:20
Alignment explanation
Indices: 49726109--49726148 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
49726099 TAATTTAGCC
* *
49726109 ATTTTTATTTTTATTTTAAT
1 ATTTTTATTTTCAATTTAAT
*
49726129 ATTTTTGTTTTCAATTTAAT
1 ATTTTTATTTTCAATTTAAT
49726149 TTGTACATTG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.25, C:0.03, G:0.03, T:0.70
Consensus pattern (20 bp):
ATTTTTATTTTCAATTTAAT
Found at i:49730169 original size:30 final size:30
Alignment explanation
Indices: 49730121--49730178 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
49730111 CAATTTGGGG
*
49730121 TCACACGGCCAAGTCACACACCCGTGTCCT
1 TCACACGGCCAAGACACACACCCGTGTCCT
** **
49730151 TCACACGGCTGAGACACACGGCCGTGTC
1 TCACACGGCCAAGACACACACCCGTGTC
49730179 TCTGTTCGTG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.22, C:0.40, G:0.22, T:0.16
Consensus pattern (30 bp):
TCACACGGCCAAGACACACACCCGTGTCCT
Found at i:49732352 original size:42 final size:42
Alignment explanation
Indices: 49732228--49732387 Score: 119
Period size: 42 Copynumber: 3.8 Consensus size: 42
49732218 TAAGATGCCA
* * ** **
49732228 ATGCCATATCCCAGATATGGTCTTACATGGGATCACATATCG
1 ATGCCATATCCCAGATAGGGTCTTACACGAAATTGCATATCG
* * * * *
49732270 ATGCCGATAGCTCAGCTATGGTCTTACGC-AATATCT-CATATCG
1 ATGCC-ATATCCCAGATAGGGTCTTACACGAA-AT-TGCATATCG
* * *
49732313 ATGCCATGTCCCAGACT-GGGTCTTACATGAAATTGCATATTG
1 ATGCCATATCCCAGA-TAGGGTCTTACACGAAATTGCATATCG
* *
49732355 ATGTCATATCCCAGATATGGTCTTACACGAAAT
1 ATGCCATATCCCAGATAGGGTCTTACACGAAAT
49732388 CACTTATAAC
Statistics
Matches: 91, Mismatches: 20, Indels: 14
0.73 0.16 0.11
Matches are distributed among these distances:
41 2 0.02
42 54 0.59
43 35 0.38
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATAGGGTCTTACACGAAATTGCATATCG
Found at i:49734797 original size:89 final size:89
Alignment explanation
Indices: 49734646--49734825 Score: 254
Period size: 89 Copynumber: 2.0 Consensus size: 89
49734636 ACGAACTTAC
* * *
49734646 CTCGATAACTACAGTTGTAGTGGTAGATTCAAACTAAAACAAAACTTTAGCCTTTCCTTGATTTA
1 CTCGATAACTACAGTCGTAGTAGTAGAGTCAAACTAAAACAAAACTTTAGCCTTTCCTTGATTTA
*
49734711 AGT-TCGATTGTGGTTTATCTTGAT
66 AGTCT-GATTGTGGTTTATCTTAAT
** ** * *
49734735 CTCGATAACTAGGGTCGTAGTAGTAGAGTCAAACTAATCCAAAGCTTTAGCTTTTCCTTGATTTA
1 CTCGATAACTACAGTCGTAGTAGTAGAGTCAAACTAAAACAAAACTTTAGCCTTTCCTTGATTTA
49734800 AGTCTGATTGTGGTTTATCTTAAT
66 AGTCTGATTGTGGTTTATCTTAAT
49734824 CT
1 CT
49734826 AAATAAATAA
Statistics
Matches: 80, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
89 79 0.99
90 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38
Consensus pattern (89 bp):
CTCGATAACTACAGTCGTAGTAGTAGAGTCAAACTAAAACAAAACTTTAGCCTTTCCTTGATTTA
AGTCTGATTGTGGTTTATCTTAAT
Found at i:49738296 original size:44 final size:45
Alignment explanation
Indices: 49738246--49738355 Score: 127
Period size: 46 Copynumber: 2.4 Consensus size: 45
49738236 GTGTAAATGC
* *
49738246 CATGTCCAGGCATGGTCTTACACT-GA-CACATCTCGTA-GCTGATG
1 CATGTCCAGACAT-GTCTTACACTGGATCACATCTCG-AGGCCGATG
*
49738290 CATGTCCCAGACATGTCTTACACTGGATTACATCTCGAGGCCGATG
1 CATGT-CCAGACATGTCTTACACTGGATCACATCTCGAGGCCGATG
*
49738336 CATGTCCTACACATGTCTTA
1 CATGTCC-AGACATGTCTTA
49738356 TTCAGGAACA
Statistics
Matches: 57, Mismatches: 4, Indels: 8
0.83 0.06 0.12
Matches are distributed among these distances:
44 15 0.26
45 12 0.21
46 30 0.53
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (45 bp):
CATGTCCAGACATGTCTTACACTGGATCACATCTCGAGGCCGATG
Found at i:49745554 original size:23 final size:23
Alignment explanation
Indices: 49745526--49745574 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
49745516 AATGGTGAAT
49745526 TTTGCTTATTATTTTCATATGAG
1 TTTGCTTATTATTTTCATATGAG
49745549 TTTGCTTATTATTTTCATATGAG
1 TTTGCTTATTATTTTCATATGAG
49745572 TTT
1 TTT
49745575 ACTAAGCTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.20, C:0.08, G:0.12, T:0.59
Consensus pattern (23 bp):
TTTGCTTATTATTTTCATATGAG
Found at i:49745771 original size:32 final size:32
Alignment explanation
Indices: 49745735--49745798 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
49745725 ATAGGAGTTG
49745735 TTCTTTTTAGTATATGTGTTGTGAATAAATTT
1 TTCTTTTTAGTATATGTGTTGTGAATAAATTT
49745767 TTCTTTTTAGTATATGTGTTGTGAATAAATTT
1 TTCTTTTTAGTATATGTGTTGTGAATAAATTT
49745799 AGTCATTTGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.25, C:0.03, G:0.16, T:0.56
Consensus pattern (32 bp):
TTCTTTTTAGTATATGTGTTGTGAATAAATTT
Found at i:49747814 original size:8 final size:8
Alignment explanation
Indices: 49747801--49747832 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
49747791 CTAGATCGGC
49747801 AAAAGCCG
1 AAAAGCCG
49747809 AAAAGCCG
1 AAAAGCCG
*
49747817 AAATGCCG
1 AAAAGCCG
49747825 AAAAGCCG
1 AAAAGCCG
49747833 GTATTTTGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.47, C:0.25, G:0.25, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:49748119 original size:28 final size:28
Alignment explanation
Indices: 49748079--49748171 Score: 159
Period size: 28 Copynumber: 3.3 Consensus size: 28
49748069 ATGCACTATT
49748079 ATACCCCTATGTATGCAAAATTACCATA
1 ATACCCCTATGTATGCAAAATTACCATA
49748107 ATACCCCTATGTATGCAAAATTACCATA
1 ATACCCCTATGTATGCAAAATTACCATA
* * *
49748135 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATTACCATA
49748163 ATACCCCTA
1 ATACCCCTA
49748172 GGGTTAATTT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 62 1.00
ACGTcount: A:0.37, C:0.27, G:0.08, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATTACCATA
Found at i:49748308 original size:28 final size:27
Alignment explanation
Indices: 49748277--49748368 Score: 112
Period size: 28 Copynumber: 3.2 Consensus size: 27
49748267 AGGAAGCGTC
49748277 CTGGTGGCTATGCCACAAATTATCTGTT
1 CTGGTGGC-ATGCCACAAATTATCTGTT
* *
49748305 CTGGTGGCCCTGCCACCAATTATCTGTT
1 CTGGTGG-CATGCCACAAATTATCTGTT
*
49748333 CTGGTGGCACTGCCACAAAAATATCTGTAT
1 CTGGTGGCA-TGCCAC-AAATTATCTGT-T
49748363 CTGGTG
1 CTGGTG
49748369 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
27 1 0.02
28 37 0.67
29 10 0.18
30 7 0.13
ACGTcount: A:0.21, C:0.25, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCATGCCACAAATTATCTGTT
Found at i:49748387 original size:56 final size:57
Alignment explanation
Indices: 49748277--49748393 Score: 134
Period size: 56 Copynumber: 2.1 Consensus size: 57
49748267 AGGAAGCGTC
* *
49748277 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACCAATTATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACCAATTATCTGTAT
* * *
49748333 CTGGTGGC-ACTGCCACAAAAATATCTGTATCTGGTGACTCTGTCA-C-ATTTTCTGTAT
1 CTGGTGGCTA-TGCCAC-AAAATATCTGT-TCTGGTGACCCTGCCACCAATTATCTGTAT
49748390 CTGG
1 CTGG
49748394 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
55 1 0.02
56 22 0.42
57 16 0.31
58 13 0.25
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (57 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACCAATTATCTGTAT
Found at i:49759651 original size:40 final size:40
Alignment explanation
Indices: 49759596--49759982 Score: 679
Period size: 40 Copynumber: 9.7 Consensus size: 40
49759586 TGAGCATTGG
49759596 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
49759636 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
*
49759676 GATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTT
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
*
49759716 GATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTT
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
*
49759756 GATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTT
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* *
49759796 GATATATCCGGGCTATGA-CCGAAGGCAATTATGCGAGAT
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
*
49759835 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGAT
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
*
49759875 GATATATCCGGGCT-AGACCCGAAGGCAATTATGCGAGAT
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
*
49759914 GATATGTCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
*
49759954 GATATGTCCGGGCTAAGACCCGAAGGCAA
1 GATATATCCGGGCTAAGACCCGAAGGCAA
49759983 ATGTGTTTGC
Statistics
Matches: 340, Mismatches: 5, Indels: 4
0.97 0.01 0.01
Matches are distributed among these distances:
39 75 0.22
40 265 0.78
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.22
Consensus pattern (40 bp):
GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
Found at i:49760017 original size:119 final size:119
Alignment explanation
Indices: 49759596--49759982 Score: 627
Period size: 119 Copynumber: 3.2 Consensus size: 119
49759586 TGAGCATTGG
* *
49759596 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAG
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGATATATCCGGGCTAATA-CCGAAG
49759661 GCAATTATGCGAGTTGATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTT
65 GCAATTATGCGAGTTGATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTT
* *
49759716 GATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCT-ATGACCCGAA
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGATATATCCGGGCTAAT-A-CCGAA
*
49759780 GGCAATTATGCGAGTTGATATATCCGGGCTATGA-CCGAAGGCAATTATGCGAGAT
64 GGCAATTATGCGAGTTGATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTT
*
49759835 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGATATATCCGGGCTAGA-CCCGAAG
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGATATATCCGGGCTA-ATACCGAAG
* * *
49759899 GCAATTATGCGAGATGATATGTCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
65 GCAATTATGCGAGTTGATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTT
*
49759954 GATATGTCCGGGCTAAGACCCGAAGGCAA
1 GATATATCCGGGCTAAGACCCGAAGGCAA
49759983 ATGTGTTTGC
Statistics
Matches: 252, Mismatches: 11, Indels: 9
0.93 0.04 0.03
Matches are distributed among these distances:
118 36 0.14
119 121 0.48
120 94 0.37
121 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.22
Consensus pattern (119 bp):
GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGATATATCCGGGCTAATACCGAAGG
CAATTATGCGAGTTGATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTT
Found at i:49768457 original size:40 final size:40
Alignment explanation
Indices: 49768349--49768731 Score: 652
Period size: 40 Copynumber: 9.7 Consensus size: 40
49768339 TGAGCATTGG
49768349 GATATATCCGGGCT-AGA-CCGAAGGCAATTATGCGAGTT
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
49768387 GATATATCCGGGCT-AGACCCGAAGGCAATTATGCGAGTT
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
*
49768426 GATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTT
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
*
49768466 GATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTT
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
*
49768506 GATATATCCGGGCTATGACCCGAAGGCAATTATGCGAG-T
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
*
49768545 GATATATCCGGGCT-AGACCCGAAGGCAATTATGCGAGAT
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
*
49768584 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGAT
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
*
49768624 GATAT-TCCGGGCTAAGACCCGAAGGCAATTATGCGAGAT
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
*
49768663 GATATGTCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
*
49768703 GATATGTCCGGGCTAAGACCCGAAGGCAA
1 GATATATCCGGGCTAAGACCCGAAGGCAA
49768732 ATGTGTTTGC
Statistics
Matches: 337, Mismatches: 3, Indels: 8
0.97 0.01 0.02
Matches are distributed among these distances:
38 39 0.12
39 104 0.31
40 194 0.58
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.22
Consensus pattern (40 bp):
GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
Found at i:49768478 original size:79 final size:79
Alignment explanation
Indices: 49768349--49768731 Score: 648
Period size: 79 Copynumber: 4.9 Consensus size: 79
49768339 TGAGCATTGG
49768349 GATATATCCGGGCT-AGA-CCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAGACCCGAAGG
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAGACCCGAAGG
*
49768412 CAATTATGCGAGTT
66 CAATTATGCGAGAT
*
49768426 GATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTATGACCCGAAG
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTA-GACCCGAAG
*
49768491 GCAATTATGCGAGTT
65 GCAATTATGCGAGAT
*
49768506 GATATATCCGGGCTATGACCCGAAGGCAATTATGCGAG-TGATATATCCGGGCTAGACCCGAAGG
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAGACCCGAAGG
49768570 CAATTATGCGAGAT
66 CAATTATGCGAGAT
*
49768584 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGATAT-TCCGGGCTAAGACCCGAAG
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCT-AGACCCGAAG
49768648 GCAATTATGCGAGAT
65 GCAATTATGCGAGAT
* *
49768663 GATATGTCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATGTCCGGGCTAAGACCCGAAG
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCT-AGACCCGAAG
49768728 GCAA
65 GCAA
49768732 ATGTGTTTGC
Statistics
Matches: 295, Mismatches: 5, Indels: 9
0.95 0.02 0.03
Matches are distributed among these distances:
77 14 0.05
78 70 0.24
79 126 0.43
80 85 0.29
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.22
Consensus pattern (79 bp):
GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAGACCCGAAGG
CAATTATGCGAGAT
Found at i:49768592 original size:197 final size:196
Alignment explanation
Indices: 49768349--49768731 Score: 669
Period size: 197 Copynumber: 1.9 Consensus size: 196
49768339 TGAGCATTGG
*
49768349 GATATATCCGGGCTAGACCGAAGGCAATTATGCGAGTTGATATATCCGGGCT-AGACCCGAAGGC
1 GATATATCCGGGCTAGACCGAAGGCAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGGC
* * *
49768413 AATTATGCGAGTTGATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTGATATATCCGGG
66 AATTATGCGAGATGATAT-TCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGATATATCCGGG
* *
49768478 CTATGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTATGACCCGAAGGCAATTATGCGA
130 CTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGA
49768543 GT
195 GT
49768545 GATATATCCGGGCTAGACCCGAAGGCAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGG
1 GATATATCCGGGCTAGA-CCGAAGGCAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGG
*
49768610 CAATTATGCGAGATGATATTCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGATATGTCCGGG
65 CAATTATGCGAGATGATATTCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGATATATCCGGG
*
49768675 CTAAGACCCGAAGGCAATTATGCGAGTTGATATGTCCGGGCTAAGACCCGAAGGCAA
130 CTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAA
49768732 ATGTGTTTGC
Statistics
Matches: 177, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
196 17 0.10
197 131 0.74
198 29 0.16
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.22
Consensus pattern (196 bp):
GATATATCCGGGCTAGACCGAAGGCAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGGC
AATTATGCGAGATGATATTCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGATATATCCGGGC
TAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAG
T
Found at i:49770671 original size:40 final size:37
Alignment explanation
Indices: 49770614--49770897 Score: 237
Period size: 40 Copynumber: 7.1 Consensus size: 37
49770604 TTGAATGATG
* * *
49770614 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGACTAAGT-CCGAAGGCATTTGTGC-GAGT-ACTA-A
49770654 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 TCCGGACTAAG-TCCGAAGGCATTTGTGCGAG-TACTAA
* * *
49770693 TTCCGGGCTAAGCCCGAAGGCATTTGTACGAGTTACTAAA
1 -TCCGGACTAAGTCCGAAGGCATTTGTGCGAG-TACT-AA
49770733 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCGAAGGCATTTGTGCGAG-TACT-AA
**
49770773 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGT-CCGAAGGCATTTGTGCGAG-TACT-AA
**
49770813 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGACTAAGT-CCGAAGGCATTTGTGCGAG-TACTA-A
* * * **
49770853 ACCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATA
1 TCCGGACTAAGT-CCGAAGGCATTTGTGCGAGTA-CTA-A
49770893 TCCGG
1 TCCGG
49770898 TTAAATTCCG
Statistics
Matches: 217, Mismatches: 18, Indels: 18
0.86 0.07 0.07
Matches are distributed among these distances:
39 37 0.17
40 171 0.79
41 9 0.04
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (37 bp):
TCCGGACTAAGTCCGAAGGCATTTGTGCGAGTACTAA
Found at i:49770838 original size:80 final size:80
Alignment explanation
Indices: 49770614--49770878 Score: 376
Period size: 80 Copynumber: 3.3 Consensus size: 80
49770604 TTGAATGATG
* * * *
49770614 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGACTAAGATCCGAAGGCATT
* *
49770678 TGTGCGAGATACTAAT
65 TGTGCGAGTTACTAAA
*
49770694 TCCGGGCTAAG-CCCGAAGGCATTTGTACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTT
49770758 GTGCGAGTTACTAAA
66 GTGCGAGTTACTAAA
* **
49770773 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGAT-CCGAAGGCATT
49770837 TGTGCGAGTTACTATAA
65 TGTGCGAGTTACTA-AA
*
49770854 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
49770879 AACGAGTAGC
Statistics
Matches: 168, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
79 65 0.39
80 101 0.60
81 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:49770885 original size:80 final size:78
Alignment explanation
Indices: 49770615--49770911 Score: 332
Period size: 80 Copynumber: 3.7 Consensus size: 78
49770605 TGAATGATGT
* * * * * **
49770615 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTAC-GAGTTACTAAATCCGGGTTAAG-TCCGAAGGCATTT
* *
49770679 GTGCGAGATACTAATT
64 GTGCGAGTTACTAA-A
**
49770695 CCGGGCTAAG-CCCGAAGGCATTTGTACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAATCCGGGTTAAG-TCCGAAGGCATTTG
49770759 TGCGAGTTACTAAA
65 TGCGAGTTACTAAA
* *
49770773 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 -CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAATCCGGGTTAAGT-CCGAAGGCATTT
49770838 GTGCGAGTTACTATAA
64 GTGCGAGTTACTA-AA
* * * *
49770854 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTA-CTAAATCCGGGTT-AAGTCCGAAGG
49770912 TACGTGATTT
Statistics
Matches: 193, Mismatches: 17, Indels: 15
0.86 0.08 0.07
Matches are distributed among these distances:
79 77 0.40
80 114 0.59
81 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTTGT
GCGAGTTACTAAA
Found at i:49770885 original size:120 final size:118
Alignment explanation
Indices: 49770667--49770911 Score: 325
Period size: 120 Copynumber: 2.1 Consensus size: 118
49770657 GGACTAAGAT
*
49770667 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTACGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTACGAGTTACTAA
** *
49770732 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CTAAATCCGGGTTAAGTC
66 ATCCGGACTAAGATCCGAAGGCATTTGAACGAG-TAGCTAAATCC-GGTTAAATC
* * *
49770786 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATTTGTACGAGTTACTA
* * * *
49770851 TAA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATT
65 -AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTAGCTAAATCCGGTTAAATC
49770905 CCGAAGG
1 CCGAAGG
49770912 TACGTGATTT
Statistics
Matches: 111, Mismatches: 11, Indels: 8
0.85 0.08 0.06
Matches are distributed among these distances:
119 52 0.47
120 57 0.51
121 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (118 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTACGAGTTACTAA
ATCCGGACTAAGATCCGAAGGCATTTGAACGAGTAGCTAAATCCGGTTAAATC
Found at i:49772448 original size:19 final size:21
Alignment explanation
Indices: 49772409--49772449 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
49772399 TATTTCCTCA
*
49772409 TAGCCTCTTCGATCTCCCATG
1 TAGCCTCTTCGAACTCCCATG
49772430 TAGCCTCTTC-AAC-CCCATG
1 TAGCCTCTTCGAACTCCCATG
49772449 T
1 T
49772450 CTTTGGCGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 7 0.37
20 2 0.11
21 10 0.53
ACGTcount: A:0.17, C:0.39, G:0.12, T:0.32
Consensus pattern (21 bp):
TAGCCTCTTCGAACTCCCATG
Found at i:49777235 original size:46 final size:46
Alignment explanation
Indices: 49777181--49777348 Score: 157
Period size: 46 Copynumber: 3.6 Consensus size: 46
49777171 GCCCATAAGC
* *
49777181 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCCCATCCACAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGACGTTCACATCCACAAGT
* *
49777227 GAACTCGGACTCAACTCAACGAGCTCAGATGCCTAGTT-ACAT-CTC---T
1 GAACTCGGACTCAACTCAACGAGCTC-G--GAC--GTTCACATCCACAAGT
* * * *
49777273 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 -GAACTCGGACTCAACTCAACGAGCTCGGACGTTCACATCCACAAGT
* *
49777320 CAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGCTCGGA
49777349 TCCCAAATAT
Statistics
Matches: 101, Mismatches: 10, Indels: 22
0.76 0.08 0.17
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 3 0.03
46 56 0.55
47 27 0.27
49 4 0.04
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.32, G:0.20, T:0.20
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGTTCACATCCACAAGT
Found at i:49781733 original size:44 final size:44
Alignment explanation
Indices: 49781668--49781753 Score: 127
Period size: 44 Copynumber: 2.0 Consensus size: 44
49781658 ACATGTATCA
* * *
49781668 CATCCATTATGAACTCGGACCAACAGAACGAGCTCGGATGCCCG
1 CATCCATAATGAACTCAGACCAACACAACGAGCTCGGATGCCCG
* *
49781712 CATCCATAATGAACTCAGACCAACTCAACTAGCTCGGATGCC
1 CATCCATAATGAACTCAGACCAACACAACGAGCTCGGATGCC
49781754 TCATATATAT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.31, C:0.33, G:0.19, T:0.17
Consensus pattern (44 bp):
CATCCATAATGAACTCAGACCAACACAACGAGCTCGGATGCCCG
Found at i:49789517 original size:3 final size:3
Alignment explanation
Indices: 49789501--49789539 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
49789491 AAGGAATCAT
* *
49789501 CAA CGA CAA TAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
1 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
49789540 TAGCCAATGC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.64, C:0.31, G:0.03, T:0.03
Consensus pattern (3 bp):
CAA
Found at i:49793296 original size:49 final size:49
Alignment explanation
Indices: 49793126--49793362 Score: 280
Period size: 49 Copynumber: 4.8 Consensus size: 49
49793116 ATTGGTCGCA
* * *
49793126 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGA-AACTGT-GATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-TAG-TCACG
* * **
49793176 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTA-GTCACG
**
49793226 TGTGTAGTACTACCTGCAGGCTACTACGTGTACCAGATAATTAGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGTCACG
* * * *
49793275 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGTCACG
* * *
49793324 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
49793363 GCTTTTGCTA
Statistics
Matches: 161, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
49 85 0.53
50 75 0.47
51 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGTCACG
Found at i:49801789 original size:29 final size:31
Alignment explanation
Indices: 49801747--49801815 Score: 81
Period size: 30 Copynumber: 2.3 Consensus size: 31
49801737 TAGTAAAGTT
* *
49801747 AAAATTATACTTTAGCCCTCT-AAAATTATA
1 AAAATTATAATTTAACCCTCTAAAAATTATA
* *
49801777 AAAATT-TAATTTAATCCTTTAAAAATTATA
1 AAAATTATAATTTAACCCTCTAAAAATTATA
49801807 AAAA-TATAA
1 AAAATTATAA
49801816 ACTATAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
29 11 0.33
30 22 0.67
ACGTcount: A:0.51, C:0.10, G:0.01, T:0.38
Consensus pattern (31 bp):
AAAATTATAATTTAACCCTCTAAAAATTATA
Found at i:49804793 original size:46 final size:46
Alignment explanation
Indices: 49804743--49804870 Score: 211
Period size: 46 Copynumber: 2.8 Consensus size: 46
49804733 GGTTGAGCAT
* * *
49804743 CCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
49804789 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
* *
49804835 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
49804871 GCGGGTTACA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
Found at i:49808378 original size:30 final size:30
Alignment explanation
Indices: 49808339--49808404 Score: 114
Period size: 30 Copynumber: 2.2 Consensus size: 30
49808329 GCCTTTGCCG
*
49808339 CCACCAACTCCACTAGCCACACTTGCTGCA
1 CCACCAACTCCACTAGCCACACTTGCTCCA
*
49808369 CCACTAACTCCACTAGCCACACTTGCTCCA
1 CCACCAACTCCACTAGCCACACTTGCTCCA
49808399 CCACCA
1 CCACCA
49808405 CTTGTACCTA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.27, C:0.48, G:0.08, T:0.17
Consensus pattern (30 bp):
CCACCAACTCCACTAGCCACACTTGCTCCA
Found at i:49808947 original size:25 final size:25
Alignment explanation
Indices: 49808842--49809049 Score: 78
Period size: 23 Copynumber: 8.6 Consensus size: 25
49808832 TTTTTTTTGT
* *
49808842 TATTAT-TATAT-TTTTTAATATTA
1 TATTATGTATATATATTTAATACTA
** *
49808865 TATTA--TATATATATTCTTTTAATA
1 TATTATGTATATATATT-TAATACTA
* * * *
49808889 TATTAGGTATAT-T-CTAAATTCTA
1 TATTATGTATATATATTTAATACTA
*
49808912 TATTACGTATATATA-TT-ATACTA
1 TATTATGTATATATATTTAATACTA
* *
49808935 TTTTATGTATATATCTTTAATACTA
1 TATTATGTATATATATTTAATACTA
* * * **
49808960 TATTATTTATATTTTTTTTCTACATGTTA
1 TATTATGTATA--TATATT-TA-ATACTA
* *
49808989 TCTTATGTATATAT-TTTAGT--TA
1 TATTATGTATATATATTTAATACTA
* * * *
49809011 TATTATGTATGTATTTTTTACACTA
1 TATTATGTATATATATTTAATACTA
*
49809036 TATTATGTACATAT
1 TATTATGTATATAT
49809050 TTTTTTATAT
Statistics
Matches: 137, Mismatches: 33, Indels: 28
0.69 0.17 0.14
Matches are distributed among these distances:
22 19 0.14
23 42 0.31
24 16 0.12
25 32 0.23
26 7 0.05
27 6 0.04
28 2 0.01
29 13 0.09
ACGTcount: A:0.32, C:0.06, G:0.05, T:0.57
Consensus pattern (25 bp):
TATTATGTATATATATTTAATACTA
Found at i:49809010 original size:22 final size:22
Alignment explanation
Indices: 49808985--49809027 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
49808975 TTTTCTACAT
*
49808985 GTTATCTTATGTATATATTTTA
1 GTTATATTATGTATATATTTTA
*
49809007 GTTATATTATGTATGTATTTT
1 GTTATATTATGTATATATTTT
49809028 TTACACTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.26, C:0.02, G:0.12, T:0.60
Consensus pattern (22 bp):
GTTATATTATGTATATATTTTA
Found at i:49809143 original size:25 final size:24
Alignment explanation
Indices: 49809115--49809170 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
49809105 GTTATATTTT
*
49809115 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
49809140 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
49809163 CACTATTA
1 CACTATTA
49809171 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:49819552 original size:40 final size:40
Alignment explanation
Indices: 49819452--49819716 Score: 268
Period size: 40 Copynumber: 6.7 Consensus size: 40
49819442 GCTCCTCGTT
* * * *
49819452 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* **
49819492 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
49819531 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
49819571 CGAATGCCTTCGAGACTTAACCCGGATTTAGCATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
49819611 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
49819651 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
49819692 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
49819717 CAGCATTCAA
Statistics
Matches: 193, Mismatches: 26, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
39 39 0.20
40 139 0.72
41 15 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:49819725 original size:41 final size:41
Alignment explanation
Indices: 49819648--49819725 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
49819638 TTTGTATCTC
* * *
49819648 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
49819689 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
49819726 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:49826489 original size:40 final size:40
Alignment explanation
Indices: 49826389--49826653 Score: 268
Period size: 40 Copynumber: 6.7 Consensus size: 40
49826379 GCTCCTCGTT
* * * *
49826389 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* **
49826429 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
49826468 CGAATGCCTTCGGGATTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
49826508 CGAATGCCTTCGAGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
49826548 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
49826588 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
49826629 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
49826654 CAGCATTCAA
Statistics
Matches: 193, Mismatches: 26, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
39 39 0.20
40 139 0.72
41 15 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:49826613 original size:80 final size:80
Alignment explanation
Indices: 49826356--49826653 Score: 236
Period size: 80 Copynumber: 3.7 Consensus size: 80
49826346 AAATCACGTA
* * ** * * *
49826356 CCTTCGGGATTTAA-CCGGATATAGCTC-CTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTTT
1 CCTTCGAGACTTAACCCGGATATAG-TCACTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
49826418 AGTAACTCACAC-AATG
64 AATAACTCGCACAAATG
* * * * * *
49826434 CCTTCGGGACATAACCCGGATTTA-ACAACTCGCACGAATGCCTTCGGGATTTAACCCGG-ATTT
1 CCTTCGAGACTTAACCCGGATATAGTC-ACTCGCAC-AAAGCCTTCGGGACTTAACCCGGAATTT
*
49826497 AATAACTCGCACGAATG
64 AATAACTCGCACAAATG
* *
49826514 CCTTCGAGACTTAACCCGGATTTAGT-ATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGAATTT
1 CCTTCGAGACTTAACCCGGATATAGTCA-CTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
49826578 -GTATCTCGCACAAATG
64 AATAACTCGCACAAATG
** * * *
49826594 CCTTCG-GATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGAGA-CTTAACCCGGATATAGTCAC-TCGCACAAAGCCTTCGGGACTTAACCCGGA
49826654 CAGCATTCAA
Statistics
Matches: 179, Mismatches: 29, Indels: 22
0.78 0.13 0.10
Matches are distributed among these distances:
77 1 0.01
78 12 0.07
79 48 0.27
80 105 0.59
81 13 0.07
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (80 bp):
CCTTCGAGACTTAACCCGGATATAGTCACTCGCACAAAGCCTTCGGGACTTAACCCGGAATTTAA
TAACTCGCACAAATG
Found at i:49826662 original size:41 final size:41
Alignment explanation
Indices: 49826585--49826662 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
49826575 TTTGTATCTC
* * *
49826585 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
49826626 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
49826663 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:49830891 original size:40 final size:40
Alignment explanation
Indices: 49830836--49831013 Score: 297
Period size: 40 Copynumber: 4.5 Consensus size: 40
49830826 TGAATGATAA
49830836 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
49830876 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
49830916 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
49830956 CCAGGCTAAGTCCCGAAGGCAGTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
49830996 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
49831014 TACTTGGTTT
Statistics
Matches: 133, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
39 17 0.13
40 116 0.87
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:49847421 original size:40 final size:40
Alignment explanation
Indices: 49847339--49847522 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
49847329 TATTCGAATG
* * * *
49847339 ATATTCGGGCTAAG-TCCTGAAGGCTTTTATGCTAGTTACT
1 ATATCCGGGCTAAGATCC-GAAGGCATTTGTGCTAGTTGCT
* *
49847379 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTTGCT
* *
49847419 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-CGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTTG-CT
* * *
49847459 ATATCCGGGCTAAG-TCCCAAAGGCATTTATGCTAG-TGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTTG-CT
*
49847499 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
49847523 CTTGCGCGAG
Statistics
Matches: 123, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
39 1 0.01
40 119 0.97
41 3 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTTGCT
Found at i:49847482 original size:80 final size:80
Alignment explanation
Indices: 49847339--49847522 Score: 228
Period size: 80 Copynumber: 2.3 Consensus size: 80
49847329 TATTCGAATG
* * * * ** *
49847339 ATATTCGGGCTAAGTCCTGAAGGCTTTTATGCTAGTTACTATATCCGGACTAAGATCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGATCCAAAGGCA
* *
49847404 TTTGTGCGAGTTG-CT
66 TTTATGCGAG-TGACC
* *
49847419 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAG-TCCCAAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGAT-CCAAAGGC
*
49847483 ATTTATGCTAGTGACC
65 ATTTATGCGAGTGACC
49847499 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
49847523 CTTGCGCGAG
Statistics
Matches: 90, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
79 3 0.03
80 87 0.97
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGATCCAAAGGCA
TTTATGCGAGTGACC
Found at i:49855367 original size:50 final size:50
Alignment explanation
Indices: 49855313--49855413 Score: 193
Period size: 50 Copynumber: 2.0 Consensus size: 50
49855303 TTTAGTATCT
*
49855313 AAAACTCATATTTATCAACTTTTTGCAATTAAGCCCTAGTAGGTAAATTA
1 AAAACTCATATTTATCAACTTTTTGAAATTAAGCCCTAGTAGGTAAATTA
49855363 AAAACTCATATTTATCAACTTTTTGAAATTAAGCCCTAGTAGGTAAATTA
1 AAAACTCATATTTATCAACTTTTTGAAATTAAGCCCTAGTAGGTAAATTA
49855413 A
1 A
49855414 GCATGCTATC
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.40, C:0.15, G:0.10, T:0.36
Consensus pattern (50 bp):
AAAACTCATATTTATCAACTTTTTGAAATTAAGCCCTAGTAGGTAAATTA
Found at i:49856314 original size:16 final size:16
Alignment explanation
Indices: 49856290--49856320 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
49856280 GATTGTCGAA
*
49856290 ATTGGGGAAAGAAAAT
1 ATTGAGGAAAGAAAAT
49856306 ATTGAGGAAAGAAAA
1 ATTGAGGAAAGAAAA
49856321 GGGGGAAGAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.00, G:0.29, T:0.16
Consensus pattern (16 bp):
ATTGAGGAAAGAAAAT
Found at i:49859061 original size:43 final size:43
Alignment explanation
Indices: 49858983--49859172 Score: 208
Period size: 43 Copynumber: 4.5 Consensus size: 43
49858973 GTTAAATCCC
* * *
49858983 GCAGGCCTAGTGCTGGT-AT-TATATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
49859024 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCTTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
49859067 GCAGGCTTCGTGCCGGTCATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* ** *
49859110 GCAGGCTATAATGCCGGTGAACTG-ATATCGGGCC-TCGAGCCTA
1 GCAGGCT-TAGTGCCGGTGATGTGTAT-TCGGGCCTTCGTGCCTA
* ** *
49859153 ACAGGCAAAATGCCGGTGAT
1 GCAGGCTTAGTGCCGGTGAT
49859173 TTGAGAAAAG
Statistics
Matches: 128, Mismatches: 17, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
41 15 0.12
42 13 0.10
43 82 0.64
44 18 0.14
ACGTcount: A:0.17, C:0.24, G:0.32, T:0.27
Consensus pattern (43 bp):
GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:49867230 original size:14 final size:14
Alignment explanation
Indices: 49867211--49867255 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 14
49867201 ATTACAACTG
49867211 TAATTTGTCT-ATTT
1 TAATTTGT-TAATTT
49867225 TAATTTGATTAATTT
1 TAATTTG-TTAATTT
49867240 TAATTTGTTTAATTT
1 TAATTTG-TTAATTT
49867255 T
1 T
49867256 TTATTTTAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
14 8 0.29
15 20 0.71
ACGTcount: A:0.27, C:0.02, G:0.07, T:0.64
Consensus pattern (14 bp):
TAATTTGTTAATTT
Found at i:49867241 original size:15 final size:15
Alignment explanation
Indices: 49867221--49867255 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
49867211 TAATTTGTCT
49867221 ATTTTAATTTGATTA
1 ATTTTAATTTGATTA
*
49867236 ATTTTAATTTGTTTA
1 ATTTTAATTTGATTA
49867251 ATTTT
1 ATTTT
49867256 TTATTTTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.66
Consensus pattern (15 bp):
ATTTTAATTTGATTA
Found at i:49867762 original size:61 final size:60
Alignment explanation
Indices: 49867618--49867763 Score: 159
Period size: 61 Copynumber: 2.4 Consensus size: 60
49867608 ATAAAATAAG
* * * * *
49867618 TTAAATACTCAATTTGAATTAGATATTGTAATTATTTAAGTTTATTCTTTCCAAATTAATAT
1 TTAAATACT--ATTTGTATTAGTTATTGCAATTATTAAACTTTATTCTTTCCAAATTAATAT
* *
49867680 TTAAATACTATTTTTACTTAGTTATTGCAATTATTAAACTTTATT-TTTATCAAATTAATAT
1 TTAAATACTATTTGTA-TTAGTTATTGCAATTATTAAACTTTATTCTTT-CCAAATTAATAT
* *
49867741 TTAGATATTACTTTGTATTAGTT
1 TTAAATACTA-TTTGTATTAGTT
49867764 TATCAAATTA
Statistics
Matches: 71, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
60 8 0.11
61 49 0.69
62 14 0.20
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.51
Consensus pattern (60 bp):
TTAAATACTATTTGTATTAGTTATTGCAATTATTAAACTTTATTCTTTCCAAATTAATAT
Found at i:49869034 original size:15 final size:15
Alignment explanation
Indices: 49869014--49869045 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
49869004 TTTGATCTAG
49869014 TACGATCATCCATCC
1 TACGATCATCCATCC
49869029 TACGATCATCCATCC
1 TACGATCATCCATCC
49869044 TA
1 TA
49869046 GTTAAATGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.28, C:0.38, G:0.06, T:0.28
Consensus pattern (15 bp):
TACGATCATCCATCC
Found at i:49872874 original size:13 final size:13
Alignment explanation
Indices: 49872856--49872882 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
49872846 TGAATTGATA
49872856 TGTGTGAAAATTT
1 TGTGTGAAAATTT
49872869 TGTGTGAAAATTT
1 TGTGTGAAAATTT
49872882 T
1 T
49872883 ATTGTTTGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.22, T:0.48
Consensus pattern (13 bp):
TGTGTGAAAATTT
Found at i:49874044 original size:43 final size:43
Alignment explanation
Indices: 49873996--49874162 Score: 137
Period size: 43 Copynumber: 3.9 Consensus size: 43
49873986 GATTCCGACA
**
49873996 TGTGATTTTGTGTAAGACCATGTCTGGGACGTTGGCATCAAGT
1 TGTGATTTCATGTAAGACCATGTCTGGGACGTTGGCATCAAGT
* * * *
49874039 TGTGATTTGTATGTAAGACCATGTCTGGGACATCGGCAT--TGT
1 TGTGATTT-CATGTAAGACCATGTCTGGGACGTTGGCATCAAGT
* * * *
49874081 ATATGAGTTCGTGTAAGACCCTGTCTGGGACAG-TGGCATCGATAG-
1 -TGTGATTTCATGTAAGACCATGTCTGGGAC-GTTGGCATC-A-AGT
* * *
49874126 -GTGATTACATGTAAGTCCACGTCTGGGACGTTGGCAT
1 TGTGATTTCATGTAAGACCATGTCTGGGACGTTGGCAT
49874163 TGTACAAGCT
Statistics
Matches: 97, Mismatches: 19, Indels: 16
0.73 0.14 0.12
Matches are distributed among these distances:
42 27 0.28
43 42 0.43
44 27 0.28
46 1 0.01
ACGTcount: A:0.22, C:0.16, G:0.30, T:0.32
Consensus pattern (43 bp):
TGTGATTTCATGTAAGACCATGTCTGGGACGTTGGCATCAAGT
Found at i:49875007 original size:13 final size:13
Alignment explanation
Indices: 49874991--49875016 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
49874981 ATATGTTTCA
49874991 TGATTGTTTTGGT
1 TGATTGTTTTGGT
49875004 TGATTGTTTTGGT
1 TGATTGTTTTGGT
49875017 ATGAAACCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.00, G:0.31, T:0.62
Consensus pattern (13 bp):
TGATTGTTTTGGT
Found at i:49882182 original size:17 final size:17
Alignment explanation
Indices: 49882157--49882191 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
49882147 TAGTGGTAGT
49882157 TTAT-TTTTTGGAATAAA
1 TTATATTTTTGGAA-AAA
49882174 TTATATTTTTGGAAAAA
1 TTATATTTTTGGAAAAA
49882191 T
1 T
49882192 CTCAAAGTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.51
Consensus pattern (17 bp):
TTATATTTTTGGAAAAA
Found at i:49895398 original size:12 final size:12
Alignment explanation
Indices: 49895381--49895407 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
49895371 ATTCCGAAGT
49895381 ATATATATATAC
1 ATATATATATAC
49895393 ATATATATATAC
1 ATATATATATAC
49895405 ATA
1 ATA
49895408 AGTATGCCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATATATAC
Found at i:49895966 original size:27 final size:28
Alignment explanation
Indices: 49895854--49895978 Score: 189
Period size: 28 Copynumber: 4.5 Consensus size: 28
49895844 CATGAGATTG
* * * *
49895854 GCACTAAGTGTGCGGGTTTAAATTTTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
49895883 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
49895911 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
49895939 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
49895966 GCACTGAGTGTGC
1 GCACTAAGTGTGC
49895979 AGACTTAATA
Statistics
Matches: 91, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.25
28 50 0.55
29 18 0.20
ACGTcount: A:0.27, C:0.13, G:0.26, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:49895976 original size:55 final size:57
Alignment explanation
Indices: 49895854--49895978 Score: 191
Period size: 55 Copynumber: 2.2 Consensus size: 57
49895844 CATGAGATTG
* *
49895854 GCACTAAGTGTGCGGGTTTAAATTTTACAGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTTGATTATATA
* *
49895911 GCACTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTTGATTATATA
*
49895966 GCACTGAGTGTGC
1 GCACTAAGTGTGC
49895979 AGACTTAATA
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
55 23 0.37
56 22 0.35
57 18 0.29
ACGTcount: A:0.27, C:0.13, G:0.26, T:0.34
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTTGATTATATA
Found at i:49895990 original size:27 final size:27
Alignment explanation
Indices: 49895882--49895992 Score: 143
Period size: 28 Copynumber: 4.0 Consensus size: 27
49895872 TAAATTTTAC
*
49895882 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGATTATAT
*
49895910 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGATTATAT
*
49895938 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGATTATAT
* *
49895965 AGCACTGAGTGTGCAGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGATTATAT
49895992 A
1 A
49895993 CTTTTGAATC
Statistics
Matches: 78, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
27 30 0.38
28 48 0.62
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGATTATAT
Found at i:49899215 original size:20 final size:20
Alignment explanation
Indices: 49899190--49899230 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
49899180 TTCCATCTTT
49899190 AGATGAATCTTTGAATTTAA
1 AGATGAATCTTTGAATTTAA
*
49899210 AGATGATTCTTTGAATTTAA
1 AGATGAATCTTTGAATTTAA
49899230 A
1 A
49899231 CGAATAACTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.39, C:0.05, G:0.15, T:0.41
Consensus pattern (20 bp):
AGATGAATCTTTGAATTTAA
Found at i:49903643 original size:15 final size:15
Alignment explanation
Indices: 49903623--49903671 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
49903613 AAAGGCAGCC
49903623 AAAAAGAAAGAAACA
1 AAAAAGAAAGAAACA
49903638 AAAAAGAAAGAAA-A
1 AAAAAGAAAGAAACA
*
49903652 AATAAA-AACAAAAACA
1 AA-AAAGAA-AGAAACA
49903668 AAAA
1 AAAA
49903672 CAACAAAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
14 5 0.17
15 22 0.73
16 3 0.10
ACGTcount: A:0.84, C:0.06, G:0.08, T:0.02
Consensus pattern (15 bp):
AAAAAGAAAGAAACA
Found at i:49905322 original size:64 final size:65
Alignment explanation
Indices: 49905243--49905371 Score: 215
Period size: 64 Copynumber: 2.0 Consensus size: 65
49905233 CATATAATAA
*
49905243 CACATCTAGTTAGGAGCATATGATTCATTTTGATCATAGCATCCTAATTATTT-GACATAAGCAT
1 CACATCTAGTTAGGAGCATATGATTCATCTTGATCATAGCATCCTAATTATTTGGACATAAGCAT
* * *
49905307 CACATCTAGTTAGGAGCATTTGATTCATCTTGATCATAGCATCCTAGTTATTTGGGCATAAGCAT
1 CACATCTAGTTAGGAGCATATGATTCATCTTGATCATAGCATCCTAATTATTTGGACATAAGCAT
49905372 AAATACATGA
Statistics
Matches: 60, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
64 50 0.83
65 10 0.17
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (65 bp):
CACATCTAGTTAGGAGCATATGATTCATCTTGATCATAGCATCCTAATTATTTGGACATAAGCAT
Found at i:49905938 original size:86 final size:85
Alignment explanation
Indices: 49905616--49906306 Score: 933
Period size: 85 Copynumber: 8.1 Consensus size: 85
49905606 GCTAAAGATA
* * * * *
49905616 CGAGCCTTAACCCCCTAAGTAGTAAGGTAATAGGCTAAAAATATAGATCTTATCCCTAAACAGTA
1 CGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATACAGATCTTATCCCTAAACAGTA
* *
49905681 GTGAAACAGATCGAAGACAG
66 GTGGAGCAGATCGAAGACAG
* *
49905701 CGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATATAGATCTTATCCCTAAACAGTA
1 CGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATACAGATCTTATCCCTAAACAGTA
* *
49905766 GTGGAACATATCGAAGACAG
66 GTGGAGCAGATCGAAGACAG
* *
49905786 CGAGCCTTAA-CCCCTAAGCAGTAGGGTAATAGGCTGGAAATACAGATCTTATCCCTAAACAGTA
1 CGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATACAGATCTTATCCCTAAACAGTA
*
49905850 GTGGAGCAGATCGAAGATAG
66 GTGGAGCAGATCGAAGACAG
* *
49905870 CAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAAATATAGATCTTATCCCTAAACAGT
1 CGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCT-GAAAATACAGATCTTATCCCTAAACAGT
*
49905935 AGTGGAGCAGATCAAAGACAG
65 AGTGGAGCAGATCGAAGACAG
* *
49905956 CGAGCCTTAA-CCCCTAAGCAGTAGGGTAACAGGCTAGAAAATACAGATTTTATCCCTAAATAGT
1 CGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCT-GAAAATACAGATCTTATCCCTAAACAGT
* **
49906020 AGTGCAGCAGATCGAAGATGG
65 AGTGGAGCAGATCGAAGACAG
* * *
49906041 TGAGGCTTAACCCCCTAAGCAGTAGGGTAATAGGCTGGAAAATACAGATCTTATCCCTAAACAGT
1 CGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCT-GAAAATACAGATCTTATCCCTAAACAGT
* * *
49906106 AGTGGAGGAGATCAAAGACAA
65 AGTGGAGCAGATCGAAGACAG
* *
49906127 CGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGATGAAAATACAGATCTTATCCCTAAATAGTA
1 CGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATACAGATCTTATCCCTAAACAGTA
* *
49906192 GTGGATCAGATC-AAGGATAG
66 GTGGAGCAGATCGAA-GACAG
* * ** *
49906212 TGAGCCTTAACCCCCTAAGTAG-AGGGTAACAGGCTG-AGTTACAGATCTTATCTCCCTAAGCAG
1 CGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATACAGATCTTA--TCCCTAAACAG
* *
49906275 AAGTGGAGCAGATCGAGGACAG
64 TAGTGGAGCAGATCGAAGACAG
*
49906297 TGAGCCTTAA
1 CGAGCCTTAA
49906307 TAGTAGGGTA
Statistics
Matches: 540, Mismatches: 59, Indels: 14
0.88 0.10 0.02
Matches are distributed among these distances:
83 12 0.02
84 91 0.17
85 285 0.53
86 152 0.28
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (85 bp):
CGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATACAGATCTTATCCCTAAACAGTA
GTGGAGCAGATCGAAGACAG
Found at i:49906078 original size:171 final size:170
Alignment explanation
Indices: 49905616--49906306 Score: 951
Period size: 171 Copynumber: 4.1 Consensus size: 170
49905606 GCTAAAGATA
* * * * *
49905616 CGAGCCTTAACCCCCTAAGTAGTAAGGTAATAGGCTAAAAATATAGATCTTATCCCTAAACAGTA
1 CGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATACAGATCTTATCCCTAAACAGTA
* * * * *
49905681 GTGAAACAGATCGAAGACAGCGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATATA
66 GTGGAGCAGATCGAAGATAGCGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATACA
* * *
49905746 GATCTTATCCCTAAACAGTAGTGGAACATATCGAAGACAG
131 GATCTTATCCCTAAACAGTAGTGGAGCAGATCAAAGACAG
* *
49905786 CGAGCCTTAA-CCCCTAAGCAGTAGGGTAATAGGCTGGAAATACAGATCTTATCCCTAAACAGTA
1 CGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATACAGATCTTATCCCTAAACAGTA
* *
49905850 GTGGAGCAGATCGAAGATAGCAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAAATAT
66 GTGGAGCAGATCGAAGATAGCGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCT-GAAAATAC
49905915 AGATCTTATCCCTAAACAGTAGTGGAGCAGATCAAAGACAG
130 AGATCTTATCCCTAAACAGTAGTGGAGCAGATCAAAGACAG
* *
49905956 CGAGCCTTAA-CCCCTAAGCAGTAGGGTAACAGGCTAGAAAATACAGATTTTATCCCTAAATAGT
1 CGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCT-GAAAATACAGATCTTATCCCTAAACAGT
* * * * *
49906020 AGTGCAGCAGATCGAAGATGGTGAGGCTTAACCCCCTAAGCAGTAGGGTAATAGGCTGGAAAATA
65 AGTGGAGCAGATCGAAGATAGCGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCT-GAAAATA
* *
49906085 CAGATCTTATCCCTAAACAGTAGTGGAGGAGATCAAAGACAA
129 CAGATCTTATCCCTAAACAGTAGTGGAGCAGATCAAAGACAG
* *
49906127 CGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGATGAAAATACAGATCTTATCCCTAAATAGTA
1 CGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATACAGATCTTATCCCTAAACAGTA
* * * **
49906192 GTGGATCAGATC-AAGGATAGTGAGCCTTAACCCCCTAAGTAG-AGGGTAACAGGCTG-AGTTAC
66 GTGGAGCAGATCGAA-GATAGCGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATAC
* * * *
49906254 AGATCTTATCTCCCTAAGCAGAAGTGGAGCAGATCGAGGACAG
130 AGATCTTA--TCCCTAAACAGTAGTGGAGCAGATCAAAGACAG
*
49906297 TGAGCCTTAA
1 CGAGCCTTAA
49906307 TAGTAGGGTA
Statistics
Matches: 472, Mismatches: 43, Indels: 12
0.90 0.08 0.02
Matches are distributed among these distances:
168 12 0.03
169 102 0.22
170 139 0.29
171 195 0.41
172 24 0.05
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (170 bp):
CGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATACAGATCTTATCCCTAAACAGTA
GTGGAGCAGATCGAAGATAGCGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATACA
GATCTTATCCCTAAACAGTAGTGGAGCAGATCAAAGACAG
Found at i:49907378 original size:18 final size:18
Alignment explanation
Indices: 49907338--49907396 Score: 61
Period size: 15 Copynumber: 3.3 Consensus size: 18
49907328 CTATTTATAT
*
49907338 TTATTTTTTATTCTAATACTA
1 TTATTATTTA-TCTAAT--TA
49907359 TTATTATTTATCT-A--A
1 TTATTATTTATCTAATTA
49907374 TTATTATTTATCTAATTA
1 TTATTATTTATCTAATTA
49907392 TTATT
1 TTATT
49907397 TATCTATTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
15 14 0.41
16 1 0.03
18 6 0.18
19 1 0.03
20 3 0.09
21 9 0.26
ACGTcount: A:0.31, C:0.07, G:0.00, T:0.63
Consensus pattern (18 bp):
TTATTATTTATCTAATTA
Found at i:49907392 original size:8 final size:8
Alignment explanation
Indices: 49907359--49907407 Score: 59
Period size: 8 Copynumber: 6.5 Consensus size: 8
49907349 TCTAATACTA
49907359 TTAT-TAT
1 TTATCTAT
*
49907366 TTATCTAA
1 TTATCTAT
49907374 TTAT-TAT
1 TTATCTAT
*
49907381 TTATCTAA
1 TTATCTAT
49907389 TTAT-TAT
1 TTATCTAT
49907396 TTATCTAT
1 TTATCTAT
49907404 TTAT
1 TTAT
49907408 ATTTCTACTA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
7 16 0.46
8 19 0.54
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63
Consensus pattern (8 bp):
TTATCTAT
Found at i:49907394 original size:30 final size:30
Alignment explanation
Indices: 49907339--49907439 Score: 118
Period size: 30 Copynumber: 3.3 Consensus size: 30
49907329 TATTTATATT
*
49907339 TATTTTTTATTCTAATACTATTATTATTTATC
1 TATTTATTATT-T-ATACTATTATTATTTATC
*
49907371 TAATTATTATTTAT-CTAATTATTATTTATC
1 TATTTATTATTTATACT-ATTATTATTTATC
*
49907401 TATTTA-TATTTCTACTATTATTATATT-TC
1 TATTTATTATTTATACTATTATTAT-TTATC
49907430 TATTTATTAT
1 TATTTATTAT
49907440 ATATTTTTTT
Statistics
Matches: 61, Mismatches: 4, Indels: 10
0.81 0.05 0.13
Matches are distributed among these distances:
29 24 0.39
30 27 0.44
31 1 0.02
32 9 0.15
ACGTcount: A:0.30, C:0.08, G:0.00, T:0.62
Consensus pattern (30 bp):
TATTTATTATTTATACTATTATTATTTATC
Found at i:49907404 original size:44 final size:43
Alignment explanation
Indices: 49907356--49907456 Score: 109
Period size: 44 Copynumber: 2.3 Consensus size: 43
49907346 TATTCTAATA
*
49907356 CTATTATTATTTAT-CTAATTATTAT-TTATCTAATTATTATTTAT
1 CTATT-TTATTTATACT-ATTATTATATT-TCTAATTATTATATAT
* *
49907400 CTATTTATATTTCTACTATTATTATATTTCTATTTATTATATAT
1 CTATTT-TATTTATACTATTATTATATTTCTAATTATTATATAT
*
49907444 -TTTTTTATTTATA
1 CTATTTTATTTATA
49907457 AACTAATATT
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
42 7 0.14
43 5 0.10
44 33 0.67
45 4 0.08
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (43 bp):
CTATTTTATTTATACTATTATTATATTTCTAATTATTATATAT
Found at i:49907420 original size:29 final size:29
Alignment explanation
Indices: 49907353--49907436 Score: 109
Period size: 29 Copynumber: 2.9 Consensus size: 29
49907343 TTTTATTCTA
*
49907353 ATACTATTATTATTTATCTAATTATTATTT
1 ATACTATTATTATTTATCTATTTA-TATTT
49907383 AT-CTAATTATTATTTATCTATTTATATTT
1 ATACT-ATTATTATTTATCTATTTATATTT
*
49907412 CTACTATTATTATATT-TCTATTTAT
1 ATACTATTATTAT-TTATCTATTTAT
49907437 TATATATTTT
Statistics
Matches: 49, Mismatches: 2, Indels: 7
0.84 0.03 0.12
Matches are distributed among these distances:
29 25 0.51
30 24 0.49
ACGTcount: A:0.31, C:0.08, G:0.00, T:0.61
Consensus pattern (29 bp):
ATACTATTATTATTTATCTATTTATATTT
Found at i:49907441 original size:15 final size:15
Alignment explanation
Indices: 49907358--49907439 Score: 98
Period size: 15 Copynumber: 5.5 Consensus size: 15
49907348 TTCTAATACT
49907358 ATTATTATTTATCTA
1 ATTATTATTTATCTA
49907373 ATTATTATTTATCTA
1 ATTATTATTTATCTA
49907388 ATTATTATTTATCTA
1 ATTATTATTTATCTA
* *
49907403 TTTA-TATTTCTACT-
1 ATTATTATTTAT-CTA
49907417 ATTATTATATT-TCTA
1 ATTATTAT-TTATCTA
*
49907432 TTTATTAT
1 ATTATTAT
49907440 ATATTTTTTT
Statistics
Matches: 59, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
14 11 0.19
15 46 0.78
16 2 0.03
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.62
Consensus pattern (15 bp):
ATTATTATTTATCTA
Found at i:49907442 original size:17 final size:16
Alignment explanation
Indices: 49907401--49907456 Score: 64
Period size: 17 Copynumber: 3.5 Consensus size: 16
49907391 ATTATTTATC
49907401 TATTTATATTTCTACTAT
1 TATTTATATTTCTA-T-T
49907419 TA-TTATATTTCTATT
1 TATTTATATTTCTATT
49907434 TATTATATATTT-T-TT
1 TATT-TATATTTCTATT
49907449 TATTTATA
1 TATTTATA
49907457 AACTAATATT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 4 0.11
15 9 0.25
16 3 0.08
17 18 0.50
18 2 0.06
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (16 bp):
TATTTATATTTCTATT
Found at i:49907455 original size:19 final size:18
Alignment explanation
Indices: 49907393--49907445 Score: 65
Period size: 17 Copynumber: 2.9 Consensus size: 18
49907383 ATCTAATTAT
49907393 TATTTATCTATTTATATTTC
1 TATTTAT-TA-TTATATTTC
*
49907413 TA-CTATTATTATATTTC
1 TATTTATTATTATATTTC
49907430 TATTTATTA-TATATTT
1 TATTTATTATTATATTT
49907446 TTTTATTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
17 18 0.60
18 7 0.23
19 3 0.10
20 2 0.07
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.64
Consensus pattern (18 bp):
TATTTATTATTATATTTC
Found at i:49907645 original size:25 final size:24
Alignment explanation
Indices: 49907584--49907645 Score: 63
Period size: 25 Copynumber: 2.5 Consensus size: 24
49907574 TATAACGCTC
* *
49907584 ATTTCAAATTTTTATACATTATTT
1 ATTTCAAATTTTCATACATTATAT
*
49907608 ACTTT-AATATTTTCATATATTATAT
1 A-TTTCAA-ATTTTCATACATTATAT
49907633 ATTTCAAACTTTT
1 ATTTCAAA-TTTT
49907646 TTTTACACAT
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
24 7 0.23
25 24 0.77
ACGTcount: A:0.34, C:0.10, G:0.00, T:0.56
Consensus pattern (24 bp):
ATTTCAAATTTTCATACATTATAT
Found at i:49907686 original size:21 final size:22
Alignment explanation
Indices: 49907656--49907709 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 22
49907646 TTTTACACAT
**
49907656 TATA-TATTTTGAATTA-TTTA
1 TATATTATTTTGAAAGAGTTTA
*
49907676 TATATTATTTTTAAAGAGTTTTA
1 TATATTATTTTGAAAGAG-TTTA
49907699 TATATTATTTT
1 TATATTATTTT
49907710 AGCTTGAGTG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 4 0.14
21 9 0.32
23 15 0.54
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (22 bp):
TATATTATTTTGAAAGAGTTTA
Found at i:49910064 original size:47 final size:44
Alignment explanation
Indices: 49909948--49910069 Score: 129
Period size: 48 Copynumber: 2.6 Consensus size: 44
49909938 TTTGTGTGCC
* *
49909948 AGTGTAAGACATGTTTGGGACATGCATCGGCCACATTATGAGAGCT
1 AGTGTAAGACATGTTTGGGACATGCATCAG-C-CATTACGAGAGCT
* * *
49909994 AGTGTAAGATGATGTCTAGGACATGGCATCAG-CATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTTTGGGACAT-GCATCAGCCATT---ACGAGAGCT
49910042 AGTGTAAGACATGTTTGGGACATGCATC
1 AGTGTAAGACATGTTTGGGACATGCATC
49910070 GGCTACGAGA
Statistics
Matches: 63, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
45 4 0.06
46 14 0.22
47 22 0.35
48 23 0.37
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.25
Consensus pattern (44 bp):
AGTGTAAGACATGTTTGGGACATGCATCAGCCATTACGAGAGCT
Found at i:49910129 original size:46 final size:47
Alignment explanation
Indices: 49910038--49910158 Score: 115
Period size: 50 Copynumber: 2.6 Consensus size: 47
49910028 TTGAGACGAG
* * * *
49910038 AGCTAGTGTAAGA-CATGTTTGGGAC-ATGCATCGGCTACGAGATGT
1 AGCTAGTGTAAGACCACGTCTAGGACAAGGCATCGGCTACGAGATGT
* *
49910083 -GTTAGTGTAAGACCACGTCTAGGACAAGGCATCGGC-ACGGATATGT
1 AGCTAGTGTAAGACCACGTCTAGGACAAGGCATCGGCTAC-GAGATGT
*
49910129 GAGAGCTAGTGTAAGACCATGTCTAGGACA
1 ---AGCTAGTGTAAGACCACGTCTAGGACA
49910159 TGGCGTCGAC
Statistics
Matches: 61, Mismatches: 8, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
44 11 0.18
45 11 0.18
46 15 0.25
50 24 0.39
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (47 bp):
AGCTAGTGTAAGACCACGTCTAGGACAAGGCATCGGCTACGAGATGT
Done.