Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 156 of 356
Found at i:50298472 original size:30 final size:30
Alignment explanation
Indices: 50298414--50298474 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
50298404 ATTTCTGAGC
*
50298414 TTGGGGACAAAAGTGTAATTATGCAAAAGT
1 TTGGGGACAAAAGTGTAATTATGAAAAAGT
* * * *
50298444 TTGGGGGCAAAATTGTAATTTTTAAAAAGT
1 TTGGGGACAAAAGTGTAATTATGAAAAAGT
50298474 T
1 T
50298475 GGGTGGTGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.38, C:0.05, G:0.25, T:0.33
Consensus pattern (30 bp):
TTGGGGACAAAAGTGTAATTATGAAAAAGT
Found at i:50299048 original size:103 final size:104
Alignment explanation
Indices: 50298804--50299068 Score: 408
Period size: 103 Copynumber: 2.6 Consensus size: 104
50298794 GTTGTACATA
** *
50298804 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* ** *
50298869 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCTC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
*
50298908 GAGGGGTTGCTAAGTGCTGATTCCCC-AGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
50298972 TCTGAAAT-AAAAAGGGGGTTGCTATGTGCTGATTCCCCC
65 TCTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* * *
50299011 AAGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCAC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCAC
50299069 TAATAACGGT
Statistics
Matches: 147, Mismatches: 12, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
103 81 0.55
104 66 0.45
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (104 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
Found at i:50305949 original size:30 final size:30
Alignment explanation
Indices: 50305891--50305951 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
50305881 ATTTCCGAGC
*
50305891 TTGGGGACAAAAGTGTAATTATGCAAAAGT
1 TTGGGGACAAAAGTGTAATTATGAAAAAGT
* * * *
50305921 TTGGGGGCAAAATTGTAATTTTTAAAAAGT
1 TTGGGGACAAAAGTGTAATTATGAAAAAGT
50305951 T
1 T
50305952 GGGTGGTGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.38, C:0.05, G:0.25, T:0.33
Consensus pattern (30 bp):
TTGGGGACAAAAGTGTAATTATGAAAAAGT
Found at i:50306525 original size:103 final size:104
Alignment explanation
Indices: 50306281--50306545 Score: 408
Period size: 103 Copynumber: 2.6 Consensus size: 104
50306271 GTTGTACATA
** *
50306281 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* ** *
50306346 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCTC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
*
50306385 GAGGGGTTGCTAAGTGCTGATTCCCC-AGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
50306449 TCTGAAAT-AAAAAGGGGGTTGCTATGTGCTGATTCCCCC
65 TCTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* * *
50306488 AAGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCAC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCAC
50306546 TAATAACGGT
Statistics
Matches: 147, Mismatches: 12, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
103 81 0.55
104 66 0.45
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (104 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
Found at i:50308514 original size:21 final size:21
Alignment explanation
Indices: 50308490--50308532 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 21
50308480 ACAAGAACCA
50308490 AATTTAA-TGTTAAGTGTGAAC
1 AATTTAATTGTT-AGTGTGAAC
50308511 AATTTAATTGTTAGTGTGAAC
1 AATTTAATTGTTAGTGTGAAC
50308532 A
1 A
50308533 TATCTAGGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.37, C:0.05, G:0.19, T:0.40
Consensus pattern (21 bp):
AATTTAATTGTTAGTGTGAAC
Found at i:50318071 original size:48 final size:47
Alignment explanation
Indices: 50318016--50318240 Score: 209
Period size: 48 Copynumber: 4.7 Consensus size: 47
50318006 AGGGTGAATT
* * *
50318016 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTTGAG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCAT-TCGAG
* * * * * *
50318064 GCCGATGCCATGTCCCAGACATGGTTTTACACTAGTTCTCATCTCAAT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCAT-TCGAG
** * * *
50318112 ATCGATGCCATGTCCCAAACATGGTCTTACACTGGCTTTTATTAC-ATT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATT-CGA-G
* * * * * *
50318160 ACCAATGCCACGTTCCAAACACGGTCTTACACTGGCTCTCATATCGTG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCAT-TCGAG
*
50318208 GCCGATGCCATGTCCCAGACATGGTCTTACACT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACT
50318241 AGTGTACATA
Statistics
Matches: 140, Mismatches: 33, Indels: 8
0.77 0.18 0.04
Matches are distributed among these distances:
47 2 0.01
48 137 0.98
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATTCGAG
Found at i:50336376 original size:12 final size:12
Alignment explanation
Indices: 50336359--50336384 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
50336349 CATTCCGAAG
50336359 TATATATATACA
1 TATATATATACA
50336371 TATATATATACA
1 TATATATATACA
50336383 TA
1 TA
50336385 AGTATGCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (12 bp):
TATATATATACA
Found at i:50336897 original size:27 final size:27
Alignment explanation
Indices: 50336866--50337043 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
50336856 TAAATTGTAC
50336866 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
50336893 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
50336919 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
50336947 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
50336975 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
50337002 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
50337029 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
50337044 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:50336980 original size:82 final size:81
Alignment explanation
Indices: 50336867--50337022 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
50336857 AAATTGTACA
* *
50336867 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
50336931 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
50336948 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
50337013 TGCGAGTTGA
65 TGCGAATTGA
50337023 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:50337034 original size:82 final size:81
Alignment explanation
Indices: 50336863--50337043 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
50336853 GATTAAATTG
* *
50336863 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
50336928 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
50336944 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
50337008 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
50337026 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
50337044 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:50344489 original size:12 final size:12
Alignment explanation
Indices: 50344472--50344497 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
50344462 CATTCCAAAG
50344472 TATATATATACA
1 TATATATATACA
50344484 TATATATATACA
1 TATATATATACA
50344496 TA
1 TA
50344498 AGTATGCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (12 bp):
TATATATATACA
Found at i:50345011 original size:27 final size:27
Alignment explanation
Indices: 50344980--50345157 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
50344970 TAAATTGTAC
50344980 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
50345007 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
50345033 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
50345061 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
50345089 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
50345116 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
50345143 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
50345158 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:50345094 original size:82 final size:81
Alignment explanation
Indices: 50344981--50345136 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
50344971 AAATTGTACA
* *
50344981 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
50345045 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
50345062 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
50345127 TGCGAGTTGA
65 TGCGAATTGA
50345137 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:50345148 original size:82 final size:81
Alignment explanation
Indices: 50344977--50345157 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
50344967 GATTAAATTG
* *
50344977 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
50345042 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
50345058 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
50345122 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
50345140 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
50345158 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:50352375 original size:66 final size:66
Alignment explanation
Indices: 50352298--50352430 Score: 239
Period size: 66 Copynumber: 2.0 Consensus size: 66
50352288 CATGCCATAC
*
50352298 TTCAATATATACATTTTCAAAAGGTACCAAAATATAATTCGATAGTGTAGTGATGATCTTTGACA
1 TTCAATATATACATTTTCAAAAGGTACCAAAATATAATTCGATAGTGTAGTGATGATCCTTGACA
50352363 A
66 A
* *
50352364 TTCAATATATACATTTTCAAAAGGTATCAAAATATAGTTCGATAGTGTAGTGATGATCCTTGACA
1 TTCAATATATACATTTTCAAAAGGTACCAAAATATAATTCGATAGTGTAGTGATGATCCTTGACA
50352429 A
66 A
50352430 T
1 T
50352431 CTCCGAGCTT
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
66 64 1.00
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.35
Consensus pattern (66 bp):
TTCAATATATACATTTTCAAAAGGTACCAAAATATAATTCGATAGTGTAGTGATGATCCTTGACA
A
Found at i:50357040 original size:11 final size:11
Alignment explanation
Indices: 50357024--50357052 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
50357014 TACCGATTTG
50357024 ATTAAAAAATT
1 ATTAAAAAATT
50357035 ATT-AAAAATT
1 ATTAAAAAATT
50357045 ATTAAAAA
1 ATTAAAAA
50357053 TTAAAAAATC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (11 bp):
ATTAAAAAATT
Found at i:50357051 original size:9 final size:10
Alignment explanation
Indices: 50357028--50357055 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
50357018 GATTTGATTA
50357028 AAAAATTATT
1 AAAAATTATT
50357038 AAAAATTATT
1 AAAAATTATT
50357048 AAAAATTA
1 AAAAATTA
50357056 AAAAATCCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (10 bp):
AAAAATTATT
Found at i:50365195 original size:21 final size:22
Alignment explanation
Indices: 50365153--50365194 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
50365143 CAGTACACAC
*
50365153 TGGTTGAACCAAGTTAAAAAAT
1 TGGTTGAACCAAGCTAAAAAAT
*
50365175 TGGTTGAACGAAGCTAAAAA
1 TGGTTGAACCAAGCTAAAAA
50365195 TCAATTGAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.45, C:0.10, G:0.21, T:0.24
Consensus pattern (22 bp):
TGGTTGAACCAAGCTAAAAAAT
Found at i:50371391 original size:53 final size:53
Alignment explanation
Indices: 50371334--50371437 Score: 199
Period size: 53 Copynumber: 2.0 Consensus size: 53
50371324 AACAGATAAA
50371334 CTACTACTGTGTGCTTCATGTAGAATTTTCTAAATAAGCTTAGAATTTCTCGG
1 CTACTACTGTGTGCTTCATGTAGAATTTTCTAAATAAGCTTAGAATTTCTCGG
*
50371387 CTACTACTGTGTGCTTCATGTAGAATTTTCTAAATAAGTTTAGAATTTCTC
1 CTACTACTGTGTGCTTCATGTAGAATTTTCTAAATAAGCTTAGAATTTCTC
50371438 AGCACACAAA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 50 1.00
ACGTcount: A:0.27, C:0.16, G:0.15, T:0.41
Consensus pattern (53 bp):
CTACTACTGTGTGCTTCATGTAGAATTTTCTAAATAAGCTTAGAATTTCTCGG
Found at i:50377405 original size:31 final size:31
Alignment explanation
Indices: 50377370--50377431 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
50377360 AGGCTCGTAT
50377370 TAAGAAATGCATGAAATTTCTAAGTTACCCA
1 TAAGAAATGCATGAAATTTCTAAGTTACCCA
50377401 TAAGAAATGCATGAAATTTCTAAGTTACCCA
1 TAAGAAATGCATGAAATTTCTAAGTTACCCA
50377432 AGCCTAGCCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.42, C:0.16, G:0.13, T:0.29
Consensus pattern (31 bp):
TAAGAAATGCATGAAATTTCTAAGTTACCCA
Found at i:50382701 original size:27 final size:27
Alignment explanation
Indices: 50382670--50382847 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
50382660 TAAATTGTAC
50382670 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
50382697 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
50382723 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
50382751 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
50382779 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
50382806 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
50382833 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
50382848 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:50382784 original size:82 final size:81
Alignment explanation
Indices: 50382671--50382826 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
50382661 AAATTGTACA
* *
50382671 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
50382735 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
50382752 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
50382817 TGCGAGTTGA
65 TGCGAATTGA
50382827 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:50382838 original size:82 final size:81
Alignment explanation
Indices: 50382667--50382847 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
50382657 GATTAAATTG
* *
50382667 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
50382732 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
50382748 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
50382812 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
50382830 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
50382848 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:50387134 original size:11 final size:11
Alignment explanation
Indices: 50387118--50387145 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
50387108 AAGAGAAAAG
50387118 AAAAAAGAAGA
1 AAAAAAGAAGA
50387129 AAAAAAGAAGA
1 AAAAAAGAAGA
50387140 AAAAAA
1 AAAAAA
50387146 CTGAATCCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (11 bp):
AAAAAAGAAGA
Found at i:50388128 original size:25 final size:26
Alignment explanation
Indices: 50388075--50388134 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 26
50388065 AATAATAATT
*
50388075 ATAATAATAATTTTATAAATATATCTA
1 ATAATAA-AAATTTATAAATATATCTA
* * *
50388102 ATCATAAAAATTTA-AAATATCTGTA
1 ATAATAAAAATTTATAAATATATCTA
50388127 ATAATAAA
1 ATAATAAA
50388135 TACAGTAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
25 16 0.57
26 6 0.21
27 6 0.21
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.38
Consensus pattern (26 bp):
ATAATAAAAATTTATAAATATATCTA
Found at i:50397811 original size:49 final size:49
Alignment explanation
Indices: 50397699--50398098 Score: 566
Period size: 49 Copynumber: 8.5 Consensus size: 49
50397689 TATCACAGTT
* *
50397699 ATACACTTCCAC-TTCCATCACATTGGCCATTCGGCCTTAT--CATATAT
1 ATACACTTTCACATT-CATCACATTGGCCATTCGGCCTTATCACATATAC
*
50397746 ATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
*
50397795 ATACACGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
50397844 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACA-A-AC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
50397891 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
* *
50397940 ATACACTTTCACATTCATCACATTGGCCATTCGGACATA-CAC-T-T--
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
* * *
50397984 -T-CACATT--CA-TCA-CA-TTGG-CCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
*
50398025 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATACAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
*
50398074 ATACACTTTCACATTCATCATATTG
1 ATACACTTTCACATTCATCACATTG
50398099 AATCCTAAAT
Statistics
Matches: 317, Mismatches: 18, Indels: 34
0.86 0.05 0.09
Matches are distributed among these distances:
36 11 0.03
37 5 0.02
38 3 0.01
39 4 0.01
40 2 0.01
42 6 0.02
43 6 0.02
45 2 0.01
46 4 0.01
47 84 0.26
48 9 0.03
49 181 0.57
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (49 bp):
ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
Found at i:50397893 original size:96 final size:98
Alignment explanation
Indices: 50397699--50398098 Score: 611
Period size: 96 Copynumber: 4.3 Consensus size: 98
50397689 TATCACAGTT
* * *
50397699 ATACACTTCCAC-TTCCATCACATTGGCCATTCGGCCTTAT--CATATATATATACTTTCACATT
1 ATACACTTTCACATT-CATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATT
*
50397761 CATCACATTGGCCATTCGGCCTTATCACATATAC
65 CATCACATTGGCCATTCGGCCTTATCACATACAC
*
50397795 ATACACGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTC
50397860 ATCACATTGGCCATTCGGCCTTATCACA-A-AC
66 ATCACATTGGCCATTCGGCCTTATCACATACAC
50397891 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTC
50397956 ATCACATTGGCCATTCGG-------------AC
66 ATCACATTGGCCATTCGGCCTTATCACATACAC
50397976 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTC
50398041 ATCACATTGGCCATTCGGCCTTATCACATACAC
66 ATCACATTGGCCATTCGGCCTTATCACATACAC
*
50398074 ATACACTTTCACATTCATCATATTG
1 ATACACTTTCACATTCATCACATTG
50398099 AATCCTAAAT
Statistics
Matches: 282, Mismatches: 6, Indels: 30
0.89 0.02 0.09
Matches are distributed among these distances:
85 85 0.30
96 119 0.42
97 3 0.01
98 75 0.27
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (98 bp):
ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTC
ATCACATTGGCCATTCGGCCTTATCACATACAC
Found at i:50397978 original size:36 final size:36
Alignment explanation
Indices: 50397938--50398009 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
50397928 TATCACATAT
50397938 ACATACACTTTCACATTCATCACATTGGCCATTCGG
1 ACATACACTTTCACATTCATCACATTGGCCATTCGG
50397974 ACATACACTTTCACATTCATCACATTGGCCATTCGG
1 ACATACACTTTCACATTCATCACATTGGCCATTCGG
50398010 CCTTATCACA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.28, C:0.31, G:0.11, T:0.31
Consensus pattern (36 bp):
ACATACACTTTCACATTCATCACATTGGCCATTCGG
Found at i:50397987 original size:85 final size:85
Alignment explanation
Indices: 50397889--50398058 Score: 340
Period size: 85 Copynumber: 2.0 Consensus size: 85
50397879 CTTATCACAA
50397889 ACATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACAT
1 ACATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACAT
50397954 TCATCACATTGGCCATTCGG
66 TCATCACATTGGCCATTCGG
50397974 ACATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACAT
1 ACATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACAT
50398039 TCATCACATTGGCCATTCGG
66 TCATCACATTGGCCATTCGG
50398059 CCTTATCACA
Statistics
Matches: 85, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 85 1.00
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (85 bp):
ACATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACAT
TCATCACATTGGCCATTCGG
Found at i:50418283 original size:40 final size:40
Alignment explanation
Indices: 50418131--50418276 Score: 163
Period size: 40 Copynumber: 3.6 Consensus size: 40
50418121 TTGAACGATG
* * * *
50418131 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* **
50418171 TCTGAACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
50418211 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
50418252 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
50418277 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
39 1 0.01
40 78 0.88
41 10 0.11
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:50426139 original size:40 final size:40
Alignment explanation
Indices: 50426062--50426201 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
50426052 GATGTCCGGG
* * * * *
50426062 CTAAGTGCCGAAGGC-TTTGTGCTAAGTGACCATATCCGAA
1 CTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGAA
**
50426102 CTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGG
1 CTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCGAA
* * **
50426142 TTAAGTCCCGAAGGCATTTGTACGAGTTACTATAA-CCGGG
1 CTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGAA
*
50426182 CTATGTCCCGAAGGCATTTG
1 CTAAGTCCCGAAGGCATTTG
50426202 AATGAGTAGC
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
39 1 0.01
40 75 0.87
41 10 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
CTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGAA
Found at i:50426215 original size:40 final size:40
Alignment explanation
Indices: 50426109--50426208 Score: 130
Period size: 40 Copynumber: 2.5 Consensus size: 40
50426099 GAACTAAGAT
** *
50426109 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGTTAAGTC
1 CCGAAGGCATTTGAACGAGTTACTATAA-CCGGGCTAAGTC
* *
50426149 CCGAAGGCATTTGTACGAGTTACTATAACCGGGCTATGTC
1 CCGAAGGCATTTGAACGAGTTACTATAACCGGGCTAAGTC
*
50426189 CCGAAGGCATTTGAATGAGT
1 CCGAAGGCATTTGAACGAGT
50426209 AGCTATATCC
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
40 52 0.96
41 2 0.04
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGAACGAGTTACTATAACCGGGCTAAGTC
Found at i:50445395 original size:47 final size:45
Alignment explanation
Indices: 50445278--50445404 Score: 127
Period size: 47 Copynumber: 2.8 Consensus size: 45
50445268 ATTTGTTTGT
* *
50445278 GAGCTAGTGTAAGACATGTTTGGGACAT-GCATCGGCCACATTATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGGCATCGG-C-CATTACGA
* *
50445324 GA-CTCAGTGTAAGATCATGCCTGGGACATGGCGTCGG-CATTGAGACGA
1 GAGCT-AGTGTAAGA-CATGTCTGGGACATGGCATCGGCCATT---ACGA
50445372 GAGCTAGTGTAAGACATGTCTGGGACAT-GCATC
1 GAGCTAGTGTAAGACATGTCTGGGACATGGCATC
50445405 AGCTACAAGA
Statistics
Matches: 68, Mismatches: 6, Indels: 14
0.77 0.07 0.16
Matches are distributed among these distances:
45 6 0.09
46 15 0.22
47 25 0.37
48 20 0.29
49 2 0.03
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.24
Consensus pattern (45 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGGCATCGGCCATTACGA
Found at i:50445439 original size:47 final size:46
Alignment explanation
Indices: 50445377--50445502 Score: 141
Period size: 47 Copynumber: 2.7 Consensus size: 46
50445367 GACGAGAGCT
*
50445377 AGTGTAAGACATGTCTGGGACAT-GCATCAGCTACAAGATG-ATAGTC
1 AGTGTAAGACGTGTCTGGGACATGGCATCAGCT-CAAGATGTA-AGTC
* **
50445423 AGTGTAAGACTGTGTCTAGGACATGGCATC-GACTTGAGATGTAAGTC
1 AGTGTAAGAC-GTGTCTGGGACATGGCATCAG-CTCAAGATGTAAGTC
*
50445470 AGTGTAAGACCGTGTCTGGGATATGGCATCAGC
1 AGTGTAAGA-CGTGTCTGGGACATGGCATCAGC
50445503 ACCTTACCCA
Statistics
Matches: 68, Mismatches: 6, Indels: 11
0.80 0.07 0.13
Matches are distributed among these distances:
46 10 0.15
47 48 0.71
48 10 0.15
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACGTGTCTGGGACATGGCATCAGCTCAAGATGTAAGTC
Found at i:50445445 original size:94 final size:94
Alignment explanation
Indices: 50445278--50445502 Score: 242
Period size: 94 Copynumber: 2.4 Consensus size: 94
50445268 ATTTGTTTGT
* * **
50445278 GAGCTAGTGTAAGACATGTTTGGGACATGCATCGGCCACATTATGAGACTCAGTGTAAGATCATG
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAAGATGAGACTCAGTGTAAGATCATG
* * *
50445343 CCTGGGACATGGCGTCGGCATTGAGACG-A
66 CCTAGGACATGGCATCGAC-TTGAGACGTA
* * * *
50445372 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCTACAAGATGATAGTCAGTGTAAGA-CTGT
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAAGATGAGACTCAGTGTAAGATC-AT
* *
50445436 GTCTAGGACATGGCATCGACTTGAGATGTA
65 GCCTAGGACATGGCATCGACTTGAGACGTA
* *
50445466 -AG-TCAGTGTAAGACCGTGTCTGGGATATGGCATCAGC
1 GAGCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCAGC
50445503 ACCTTACCCA
Statistics
Matches: 111, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
92 1 0.01
93 19 0.17
94 83 0.75
95 8 0.07
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (94 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAAGATGAGACTCAGTGTAAGATCATG
CCTAGGACATGGCATCGACTTGAGACGTA
Found at i:50461723 original size:46 final size:46
Alignment explanation
Indices: 50461673--50461840 Score: 182
Period size: 46 Copynumber: 3.6 Consensus size: 46
50461663 TGGTTGAGCA
*
50461673 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCAGTTATGGATGCGAATG
* *
50461719 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCAGTTATGGATGCGAA-T--G
* * * *
50461764 CATTCGAACTCGTTCAGTTGAGTCCGAGTTCAGTTATGGATACGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCAGTTATGGATGCGAATG
* *
50461812 CCCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
50461841 GCTCATGGGC
Statistics
Matches: 100, Mismatches: 13, Indels: 18
0.76 0.10 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 54 0.54
47 27 0.27
48 4 0.04
50 3 0.03
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCAGTTATGGATGCGAATG
Found at i:50461834 original size:93 final size:93
Alignment explanation
Indices: 50461670--50461841 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
50461660 GGATGGTTGA
* * * *
50461670 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTCAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGT
50461735 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
50461763 GCATTCGAACTCGTTCAGTTGAGTCCGAGTTCAGTTATGGATACGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTCAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGT
50461828 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
50461842 CTCATGGGCG
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTCAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:50467568 original size:17 final size:17
Alignment explanation
Indices: 50467542--50467575 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
50467532 TTTAGGATAA
*
50467542 ATTTTAATTGATTTATG
1 ATTTTAATTGATATATG
*
50467559 ATTTTGATTGATATATG
1 ATTTTAATTGATATATG
50467576 TTGAATTAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.15, T:0.56
Consensus pattern (17 bp):
ATTTTAATTGATATATG
Found at i:50470465 original size:43 final size:42
Alignment explanation
Indices: 50470418--50470507 Score: 110
Period size: 42 Copynumber: 2.1 Consensus size: 42
50470408 AGATGTGGTT
*
50470418 TTACATCTAATCAAATATCGATG-CCACTGTCCCAGACAGGGTC
1 TTACATCAAATCAAATA-CGATGTCCA-TGTCCCAGACAGGGTC
* * * *
50470461 TTACATGAAATTAAATACGATGTCGATGTCCCAGACATGGTC
1 TTACATCAAATCAAATACGATGTCCATGTCCCAGACAGGGTC
50470503 TTACA
1 TTACA
50470508 CATAAATCAT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
42 25 0.61
43 16 0.39
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (42 bp):
TTACATCAAATCAAATACGATGTCCATGTCCCAGACAGGGTC
Found at i:50480350 original size:53 final size:52
Alignment explanation
Indices: 50480248--50480355 Score: 189
Period size: 53 Copynumber: 2.0 Consensus size: 52
50480238 CAATTACTGG
50480248 ACCTATTAGATGGTGACACATGGTCTTCAGATTTAATCATTCATTTTTTTAAT
1 ACCTATTAGATGGTGACACATGGTCTTCAGATTTAATCATTCA-TTTTTTAAT
50480301 ACCTATTAGATGGTGACACATGGTATCTTCAGATTTAATCATTCATTTTTTAAT
1 ACCTATTAGATGGTGACACATGG--TCTTCAGATTTAATCATTCATTTTTTAAT
50480355 A
1 A
50480356 AAAAATTATA
Statistics
Matches: 53, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
53 23 0.43
54 10 0.19
55 20 0.38
ACGTcount: A:0.30, C:0.15, G:0.13, T:0.43
Consensus pattern (52 bp):
ACCTATTAGATGGTGACACATGGTCTTCAGATTTAATCATTCATTTTTTAAT
Found at i:50481871 original size:29 final size:29
Alignment explanation
Indices: 50481828--50481901 Score: 78
Period size: 29 Copynumber: 2.5 Consensus size: 29
50481818 CAATTCAAGT
* *
50481828 TTCATATGTATAATTATAC-CAAATCAAAA
1 TTCATATATA-AATTATACACAAACCAAAA
*
50481857 TTCATATATCAAATTATACATTAAACCAAAA
1 TTCATATAT-AAATTATACA-CAAACCAAAA
*
50481888 TTCATGTATAAATT
1 TTCATATATAAATT
50481902 TAATATTTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
29 16 0.42
30 6 0.16
31 16 0.42
ACGTcount: A:0.47, C:0.14, G:0.03, T:0.36
Consensus pattern (29 bp):
TTCATATATAAATTATACACAAACCAAAA
Found at i:50484848 original size:34 final size:34
Alignment explanation
Indices: 50484775--50484856 Score: 101
Period size: 34 Copynumber: 2.4 Consensus size: 34
50484765 TAGTCCATTT
* * **
50484775 GGTGTGCTAGATGGATTGGCTCTTACAAGCATTT
1 GGTGTGCTGGATGGATTGGCTCATACAAGCATAC
* * *
50484809 AGTGTGCTGGGTGGATTGGCTCATACGAGCATAC
1 GGTGTGCTGGATGGATTGGCTCATACAAGCATAC
50484843 GGTGTGCTGGATGG
1 GGTGTGCTGGATGG
50484857 TTAACGACGT
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.18, C:0.15, G:0.37, T:0.30
Consensus pattern (34 bp):
GGTGTGCTGGATGGATTGGCTCATACAAGCATAC
Found at i:50485759 original size:18 final size:19
Alignment explanation
Indices: 50485736--50485777 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
50485726 TTTGTTTTGA
50485736 AAATTTTC-ATTTTATCCC
1 AAATTTTCTATTTTATCCC
* *
50485754 AAATTTTCTATTTTGTCTC
1 AAATTTTCTATTTTATCCC
50485773 AAATT
1 AAATT
50485778 GGTCTTTGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.29, C:0.17, G:0.02, T:0.52
Consensus pattern (19 bp):
AAATTTTCTATTTTATCCC
Found at i:50489648 original size:12 final size:12
Alignment explanation
Indices: 50489631--50489657 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
50489621 GGATCCTCTC
50489631 CAACTCGGATGG
1 CAACTCGGATGG
50489643 CAACTCGGATGG
1 CAACTCGGATGG
50489655 CAA
1 CAA
50489658 AGCTAAATGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.30, C:0.26, G:0.30, T:0.15
Consensus pattern (12 bp):
CAACTCGGATGG
Found at i:50491256 original size:42 final size:42
Alignment explanation
Indices: 50491137--50491258 Score: 127
Period size: 42 Copynumber: 2.9 Consensus size: 42
50491127 TGCTATACCA
* * * ** *
50491137 ATGCCATATCCTAGATATGGCCTTGCATGGGATCTGATATCG
1 ATGCCATATCCTAGATATGGTCTTACACGAAATCTCATATCG
* * * * *
50491179 ATGCCAATAGCCCAGGTATGGTCTTAAACAAAATCTCATATCG
1 ATGCC-ATATCCTAGATATGGTCTTACACGAAATCTCATATCG
*
50491222 ATGCCATATCCTAGATATGGTCTTACACGTAATCTCA
1 ATGCCATATCCTAGATATGGTCTTACACGAAATCTCA
50491259 ACTAACCCTA
Statistics
Matches: 62, Mismatches: 17, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
42 31 0.50
43 31 0.50
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCTAGATATGGTCTTACACGAAATCTCATATCG
Found at i:50500325 original size:93 final size:93
Alignment explanation
Indices: 50500218--50500388 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
50500208 GCCCCTAAGT
* * *
50500218 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTGAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
50500283 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* * *
50500311 GAACTCGGACTCAACTCAACTAGTTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
50500376 TGAGTTCGGATGC
66 CGAGTTCGGATGC
50500389 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:50500372 original size:46 final size:46
Alignment explanation
Indices: 50500213--50500385 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
50500203 AACCCGCCCC
* * *
50500213 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* * *
50500259 TAAGTGAACTCGGACTCAACTGAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* * * *
50500307 TCA-CGAACTCGGACTCAACTCAACTAGTTTGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
50500352 TAAGTGAACTCGGACTCAACTCAATGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
50500386 TGCTCAACCA
Statistics
Matches: 100, Mismatches: 18, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 57 0.57
47 26 0.26
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:50500845 original size:30 final size:30
Alignment explanation
Indices: 50500811--50500867 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
50500801 ATTTAATACG
50500811 AACTTTGGAAAAATTACACTTTTGCCCTTA
1 AACTTTGGAAAAATTACACTTTTGCCCTTA
* * *
50500841 AACTTTTGCATAATTACACTTTTGCCC
1 AACTTTGGAAAAATTACACTTTTGCCC
50500868 CTAGGCTGGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.39
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCTTA
Found at i:50507808 original size:46 final size:46
Alignment explanation
Indices: 50507736--50507908 Score: 188
Period size: 46 Copynumber: 3.7 Consensus size: 46
50507726 AACCCGCCCC
* *
50507736 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCA
* * * * * *
50507782 TAAGGGAACTCGGACTCAACTCAACGAGTTCAGACGCCTAG-TTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-TTCGCATCCA
* ** *
50507828 TTTCA-CAAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCA
*
50507875 TAAGTGAACTCGGACTCAACTCAATGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
50507909 TGCTCAACCA
Statistics
Matches: 101, Mismatches: 21, Indels: 10
0.77 0.16 0.08
Matches are distributed among these distances:
45 2 0.02
46 64 0.63
47 33 0.33
48 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCA
Found at i:50508368 original size:30 final size:30
Alignment explanation
Indices: 50508334--50508390 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
50508324 ATTTAATACG
50508334 AACTTTGGAAAAATTACACTTTTGCCCTTA
1 AACTTTGGAAAAATTACACTTTTGCCCTTA
* * *
50508364 AACTTTTGCATAATTACACTTTTGCCC
1 AACTTTGGAAAAATTACACTTTTGCCC
50508391 CTAGGCTGGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.39
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCTTA
Found at i:50509604 original size:54 final size:52
Alignment explanation
Indices: 50509522--50509720 Score: 205
Period size: 49 Copynumber: 3.8 Consensus size: 52
50509512 ATTAGGGTTT
*
50509522 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGG
1 AAGGATACCATGTAAGACCATGCTAAGGCATGGCAA-TGGTAA-GTTTCTAA-GG
* * * *
50509577 AAGG-TCCCATGTAAGACCATGCTAAGGCATGACATTGGTGAG-TTCATAAGG
1 AAGGATACCATGTAAGACCATGCTAAGGCATGGCAATGGTAAGTTTC-TAAGG
* *
50509628 CAAGGATACCATGTAAGACCATG-TCGAGACATGGCAATGGTAAGTTTC-AA--
1 -AAGGATACCATGTAAGACCATGCT-AAGGCATGGCAATGGTAAGTTTCTAAGG
* *
50509678 AAGGATACCACGTAAGACCATGAC-AAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATG-CTAAGGCATGGCAATGGTAAG
50509721 GTACCCGTGT
Statistics
Matches: 123, Mismatches: 14, Indels: 20
0.78 0.09 0.13
Matches are distributed among these distances:
49 38 0.31
51 5 0.04
52 11 0.09
53 35 0.28
54 30 0.24
55 4 0.03
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.21
Consensus pattern (52 bp):
AAGGATACCATGTAAGACCATGCTAAGGCATGGCAATGGTAAGTTTCTAAGG
Found at i:50511664 original size:47 final size:48
Alignment explanation
Indices: 50511531--50511669 Score: 190
Period size: 48 Copynumber: 2.9 Consensus size: 48
50511521 TACCACGGTT
* * *
50511531 ATACGTGTAACGTGGTACTAAGTGGATATACCACGATTACACATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATTG
* * *
50511579 ATACATGTAACGTGGTGCAAAGTGGATATGCCACGGTTACATATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATTG
* * *
50511627 ATTCAT-TAACGTGGTGCTAAGTGGATATACCATGGTTAAACAT
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACAT
50511670 GTAACGTGGT
Statistics
Matches: 79, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
47 32 0.41
48 47 0.59
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.30
Consensus pattern (48 bp):
ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATTG
Found at i:50511708 original size:38 final size:38
Alignment explanation
Indices: 50511633--50511709 Score: 118
Period size: 38 Copynumber: 2.0 Consensus size: 38
50511623 ATTGATTCAT
**
50511633 TAACGTGGTGCTAAGTGGATATACCATGGTTAAACATG
1 TAACGTGGTGCTAAGTGGATATACCACAGTTAAACATG
* *
50511671 TAACGTGGTGCTAAGTGGATATGCCACAGTTATACATG
1 TAACGTGGTGCTAAGTGGATATACCACAGTTAAACATG
50511709 T
1 T
50511710 TAATTTGAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (38 bp):
TAACGTGGTGCTAAGTGGATATACCACAGTTAAACATG
Found at i:50514260 original size:26 final size:27
Alignment explanation
Indices: 50514179--50514261 Score: 69
Period size: 27 Copynumber: 2.9 Consensus size: 27
50514169 CGAGGCTGCC
* *
50514179 AGATATTATGACGAAGCCACCAGATAT
1 AGATATTGTGGCGAAGCCACCAGATAT
* *
50514206 AGATATTGTGGCTAGGCCACTAGAACAGATAT
1 AGATATTGTGGCGAAGCCAC-----CAGATAT
*
50514238 ATATA-TGTGGCGAAGCCACCAGAT
1 AGATATTGTGGCGAAGCCACCAGAT
50514262 TGCAACGAGG
Statistics
Matches: 44, Mismatches: 7, Indels: 11
0.71 0.11 0.18
Matches are distributed among these distances:
26 5 0.11
27 16 0.36
31 12 0.27
32 11 0.25
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.23
Consensus pattern (27 bp):
AGATATTGTGGCGAAGCCACCAGATAT
Found at i:50516634 original size:40 final size:40
Alignment explanation
Indices: 50516540--50516684 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
50516530 TACTCGAATG
*
50516540 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
50516581 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
** * *
50516621 ATATCCGGGCTAAGTCCCGAAGGCATTAATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
50516661 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
50516685 CTTGTGCGAG
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 61 0.67
41 28 0.31
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:50518192 original size:27 final size:27
Alignment explanation
Indices: 50518162--50518307 Score: 211
Period size: 27 Copynumber: 5.4 Consensus size: 27
50518152 GGGGCAAAAT
* * * *
50518162 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
50518189 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
50518216 GGTATTTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
50518243 AGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
50518270 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
50518297 GGTAATTCTAC
1 GGTAATTCTAC
50518308 AACTTATCCA
Statistics
Matches: 105, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 105 1.00
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:50524382 original size:27 final size:26
Alignment explanation
Indices: 50524334--50524393 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
50524324 GTGAGGCTGC
*
50524334 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
50524361 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
50524387 CAGATAT
1 CAGATAT
50524394 ATATATGTCG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:50525164 original size:27 final size:26
Alignment explanation
Indices: 50525134--50525305 Score: 166
Period size: 27 Copynumber: 6.4 Consensus size: 26
50525124 GGGAAAAATA
* *
50525134 GTAATTTTACTCTACAAGGGTATCTCG
1 GTAATTCTAC-CTACAAGGGTATTTCG
*
50525161 GTAATTCTACCCTA-TAGTGGTATTTCG
1 GTAATTCTA-CCTACAAG-GGTATTTCG
* **
50525188 GTATTTCTACCCTACAAAAGTATTTCG
1 GTAATTCTA-CCTACAAGGGTATTTCG
* *
50525215 ATAATTCTATCCTACAGGGGTATTTCG
1 GTAATTCTA-CCTACAAGGGTATTTCG
* * *
50525242 ATAATTCTACCTTACAGGGGTATTTCA
1 GTAATTCTACC-TACAAGGGTATTTCG
*
50525269 GTAATTCTACCATACAGGGGTATTTCG
1 GTAATTCTACC-TACAAGGGTATTTCG
50525296 GTAATTCTAC
1 GTAATTCTAC
50525306 AACTTATCCA
Statistics
Matches: 124, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
26 4 0.03
27 118 0.95
28 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (26 bp):
GTAATTCTACCTACAAGGGTATTTCG
Found at i:50525221 original size:54 final size:54
Alignment explanation
Indices: 50525134--50525305 Score: 184
Period size: 54 Copynumber: 3.2 Consensus size: 54
50525124 GGGAAAAATA
* * ** * * * *
50525134 GTAATTTTACTCTACAAGGGTATCTCGGTAATTCTACCCTATAGTGGTATTTCG
1 GTAATTCTACCCTACAAAAGTATTTCGATAATTCTACCCTACAGGGGTATTTCG
* *
50525188 GTATTTCTACCCTACAAAAGTATTTCGATAATTCTATCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAAAAGTATTTCGATAATTCTACCCTACAGGGGTATTTCG
* * *** *
50525242 ATAATTCTACCTTACAGGGGTATTTC-AGTAATTCTACCATACAGGGGTATTTCG
1 GTAATTCTACCCTACAAAAGTATTTCGA-TAATTCTACCCTACAGGGGTATTTCG
50525296 GTAATTCTAC
1 GTAATTCTAC
50525306 AACTTATCCA
Statistics
Matches: 98, Mismatches: 19, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
53 1 0.01
54 97 0.99
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (54 bp):
GTAATTCTACCCTACAAAAGTATTTCGATAATTCTACCCTACAGGGGTATTTCG
Found at i:50525277 original size:81 final size:81
Alignment explanation
Indices: 50525145--50525304 Score: 203
Period size: 81 Copynumber: 2.0 Consensus size: 81
50525135 TAATTTTACT
* * * * * *
50525145 CTACAAGGGTATCTCGGTAATTCTACCCTATAGTGGTATTTCGGTATTTCTACCCTACAAAAGTA
1 CTACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCATACAAAAGTA
50525210 TTTCGATAATTCTATC
66 TTTCGATAATTCTATC
* * * ***
50525226 CTACAGGGGTATTTCGATAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCATACAGGGGTA
1 CTACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCATACAAAAGTA
*
50525291 TTTCGGTAATTCTA
66 TTTCGATAATTCTA
50525305 CAACTTATCC
Statistics
Matches: 66, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 66 1.00
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.36
Consensus pattern (81 bp):
CTACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCATACAAAAGTA
TTTCGATAATTCTATC
Found at i:50526969 original size:42 final size:42
Alignment explanation
Indices: 50526856--50526984 Score: 132
Period size: 42 Copynumber: 3.0 Consensus size: 42
50526846 TACATAGTAC
* * * * * **
50526856 CATACCAATGCCATATCCTAGATATGGTTTTGCATGGGATCT
1 CATATCAATGCCATATCCCAGATATGGTCTTACACGAAATCT
* * * *
50526898 GATATCGATGCCAATAGCCCAGGTATGGTCTTACACGAAATCT
1 CATATCAATGCC-ATATCCCAGATATGGTCTTACACGAAATCT
**
50526941 CATATCAATGCCATATCCCAGATATGGTCTTACACTTAATCT
1 CATATCAATGCCATATCCCAGATATGGTCTTACACGAAATCT
50526983 CA
1 CA
50526985 ACTAACCCTA
Statistics
Matches: 69, Mismatches: 17, Indels: 2
0.78 0.19 0.02
Matches are distributed among these distances:
42 37 0.54
43 32 0.46
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.30
Consensus pattern (42 bp):
CATATCAATGCCATATCCCAGATATGGTCTTACACGAAATCT
Found at i:50528774 original size:53 final size:55
Alignment explanation
Indices: 50528642--50528774 Score: 164
Period size: 55 Copynumber: 2.5 Consensus size: 55
50528632 GCAAGGAAAT
* *
50528642 CATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAAGCAAAGGTCC
1 CATGTAAGACCATGTCAAGACATGGAATTGATAAGTTACTATAAAGCAAAGGTAC
* * * * *
50528697 CATGTAAGACCATGCCAAGGCATGGAATTGGTGAGTT-C-ATAAGGC-AAGGCTAC
1 CATGTAAGACCATGTCAAGACATGGAATTGATAAGTTACTATAAAGCAAAGG-TAC
*
50528750 CATGTAAGACCATGTCTAGACATGG
1 CATGTAAGACCATGTCAAGACATGG
50528775 CAATGGTAAG
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
52 4 0.06
53 30 0.45
54 1 0.01
55 32 0.48
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.23
Consensus pattern (55 bp):
CATGTAAGACCATGTCAAGACATGGAATTGATAAGTTACTATAAAGCAAAGGTAC
Found at i:50546483 original size:11 final size:11
Alignment explanation
Indices: 50546467--50546493 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
50546457 TTTAATGTCA
50546467 CGATTAAGTCC
1 CGATTAAGTCC
50546478 CGATTAAGTCC
1 CGATTAAGTCC
50546489 CGATT
1 CGATT
50546494 CGATTTTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.30
Consensus pattern (11 bp):
CGATTAAGTCC
Found at i:50549473 original size:14 final size:14
Alignment explanation
Indices: 50549437--50549476 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
50549427 TTGTTTCACA
*
50549437 GAAAATGACTTATG
1 GAAAATGATTTATG
*
50549451 GAAAATGATTTCTG
1 GAAAATGATTTATG
50549465 GAAAATGATTTA
1 GAAAATGATTTA
50549477 CTTTTCTGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.42, C:0.05, G:0.20, T:0.33
Consensus pattern (14 bp):
GAAAATGATTTATG
Found at i:50550663 original size:19 final size:18
Alignment explanation
Indices: 50550628--50550677 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 18
50550618 AATGGCTATT
*
50550628 TTGTAAAGTTGTAAAATAA
1 TTGTAAA-TTGTGAAATAA
50550647 GTTGTAAATTGTGAAATAA
1 -TTGTAAATTGTGAAATAA
*
50550666 TTG-AAACTGTGA
1 TTGTAAATTGTGA
50550678 GCTGTTATAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 8 0.29
18 3 0.11
19 10 0.36
20 7 0.25
ACGTcount: A:0.42, C:0.02, G:0.20, T:0.36
Consensus pattern (18 bp):
TTGTAAATTGTGAAATAA
Found at i:50551328 original size:45 final size:45
Alignment explanation
Indices: 50551120--50551387 Score: 229
Period size: 45 Copynumber: 6.0 Consensus size: 45
50551110 GATATTATGC
* ** *
50551120 GATATATG-GAAGCATCCGAACTTGTTGAGTTGGTCCAAGTTCAT
1 GATATATGTGAAGCATCCGAGCTCATTGAGTTGGTCCGAGTTCAT
* * *
50551164 GATTATATGTGAAGCATTCGAGCTCGTTGAGTTGGTCTGAGTTCAT
1 GA-TATATGTGAAGCATCCGAGCTCATTGAGTTGGTCCGAGTTCAT
* * * * *
50551210 TATACATGCGAA-CATCCGAGCTCATTGAGTCGGTCCGAGTTCGT
1 GATATATGTGAAGCATCCGAGCTCATTGAGTTGGTCCGAGTTCAT
* *** * ** * *
50551254 GATATATGTG-AGAAATTTTAACTTGTTGAGTTGGTCCCAGTTCGT
1 GATATATGTGAAG-CATCCGAGCTCATTGAGTTGGTCCGAGTTCAT
* **
50551299 CATATATGTGAAGCATCCGAGCTCATTGAGTTGGTTTGAGTTCAT
1 GATATATGTGAAGCATCCGAGCTCATTGAGTTGGTCCGAGTTCAT
* * * * *
50551344 TATAGATGCG-AGCATCCGAGCTTATTAAGTTGGTCCGAGTTCAT
1 GATATATGTGAAGCATCCGAGCTCATTGAGTTGGTCCGAGTTCAT
50551388 TATAGATGCG
Statistics
Matches: 175, Mismatches: 44, Indels: 10
0.76 0.19 0.04
Matches are distributed among these distances:
43 1 0.01
44 66 0.38
45 74 0.42
46 34 0.19
ACGTcount: A:0.24, C:0.16, G:0.25, T:0.34
Consensus pattern (45 bp):
GATATATGTGAAGCATCCGAGCTCATTGAGTTGGTCCGAGTTCAT
Found at i:50551360 original size:134 final size:135
Alignment explanation
Indices: 50551138--50551385 Score: 390
Period size: 134 Copynumber: 1.8 Consensus size: 135
50551128 GAAGCATCCG
* * *
50551138 AACTTGTTGAGTTGGTCCAAGTTCATGATTATATGTGAAGCATTCGAGCTCGTTGAGTTGGTCTG
1 AACTTGTTGAGTTGGTCCAAGTTCATCATTATATGTGAAGCATCCGAGCTCATTGAGTTGGTCTG
*
50551203 AGTTCATTATACATGCGAACATCCGAGCTCATTGAGTCGGTCCGAGTTCGTGATATATGTGAGAA
66 AGTTCATTATACATGCGAACATCCGAGCTCATTAAGTCGGTCCGAGTTCGTGATATATGTGAGAA
50551268 ATTTT
131 ATTTT
* * *
50551273 AACTTGTTGAGTTGGTCCCAGTTCGTCA-TATATGTGAAGCATCCGAGCTCATTGAGTTGGTTTG
1 AACTTGTTGAGTTGGTCCAAGTTCATCATTATATGTGAAGCATCCGAGCTCATTGAGTTGGTCTG
* * * *
50551337 AGTTCATTATAGATGCGAGCATCCGAGCTTATTAAGTTGGTCCGAGTTC
66 AGTTCATTATACATGCGAACATCCGAGCTCATTAAGTCGGTCCGAGTTC
50551386 ATTATAGATG
Statistics
Matches: 102, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
134 77 0.75
135 25 0.25
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.35
Consensus pattern (135 bp):
AACTTGTTGAGTTGGTCCAAGTTCATCATTATATGTGAAGCATCCGAGCTCATTGAGTTGGTCTG
AGTTCATTATACATGCGAACATCCGAGCTCATTAAGTCGGTCCGAGTTCGTGATATATGTGAGAA
ATTTT
Found at i:50557756 original size:46 final size:45
Alignment explanation
Indices: 50557703--50557875 Score: 188
Period size: 46 Copynumber: 3.8 Consensus size: 45
50557693 TGGTTGAGCA
50557703 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAA-G
*** *
50557749 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-AA-T-GCGAAG
* *
50557796 TCCGAACTCGTTGAGTTGAGTCAGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAA-G
* * * *
50557842 CCCGAGCTCATTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
50557876 GGGGCGGTTA
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 63 0.59
47 32 0.30
48 2 0.02
49 3 0.03
50 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAAG
Found at i:50557859 original size:93 final size:93
Alignment explanation
Indices: 50557700--50557870 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
50557690 GGATGGTTGA
* * * *
50557700 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCAGAGTTCACTTATGAATGCGAACGCCCGAACTCATTGAGT
50557765 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
50557793 GCATCCGAACTCGTTGAGTTGAGTCAGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCAGAGTTCACTTATGAATGCGAACGCCCGAACTCATTGAGT
*
50557858 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
50557871 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCAGAGTTCACTTATGAATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:50560849 original size:45 final size:45
Alignment explanation
Indices: 50560775--50560953 Score: 207
Period size: 45 Copynumber: 4.0 Consensus size: 45
50560765 TGATATTATA
**
50560775 TGATATATGTGAAGCATCTGAACTTGTTGAGTTGGTCCAAGTTCG
1 TGATATATGTGAAGCATCCAAACTTGTTGAGTTGGTCCAAGTTCG
* * * **
50560820 TGATATATGTGAAGCATCCGAGCTCGTTGAGTTGGTCTGAGTTCG
1 TGATATATGTGAAGCATCCAAACTTGTTGAGTTGGTCCAAGTTCG
* * *
50560865 TGATATATGTG-AGAAATCCAAAATTGTTGAGTTGGTCCAAATTCG
1 TGATATATGTGAAG-CATCCAAACTTGTTGAGTTGGTCCAAGTTCG
* * * * *
50560910 TGATATATGTAAAGTATCCAAGCTTATTGAGTTGGTCTAAGTTC
1 TGATATATGTGAAGCATCCAAACTTGTTGAGTTGGTCCAAGTTC
50560954 ATAATGGATG
Statistics
Matches: 112, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
44 2 0.02
45 108 0.96
46 2 0.02
ACGTcount: A:0.27, C:0.13, G:0.25, T:0.35
Consensus pattern (45 bp):
TGATATATGTGAAGCATCCAAACTTGTTGAGTTGGTCCAAGTTCG
Found at i:50564214 original size:30 final size:30
Alignment explanation
Indices: 50564180--50564237 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
50564170 CCGAGCCTAA
50564180 GGGCAAAAGTGTAAATATGCAAAAGTTTAG
1 GGGCAAAAGTGTAAATATGCAAAAGTTTAG
* * * *
50564210 GGGCAAAATTGTAATTTTGCCAAAGTTT
1 GGGCAAAAGTGTAAATATGCAAAAGTTT
50564238 GAGTTAAAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.38, C:0.09, G:0.24, T:0.29
Consensus pattern (30 bp):
GGGCAAAAGTGTAAATATGCAAAAGTTTAG
Found at i:50569203 original size:10 final size:10
Alignment explanation
Indices: 50569188--50569212 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
50569178 CTGCACTTAT
50569188 TTTATGAAAA
1 TTTATGAAAA
50569198 TTTATGAAAA
1 TTTATGAAAA
50569208 TTTAT
1 TTTAT
50569213 TCGACCACAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (10 bp):
TTTATGAAAA
Found at i:50569761 original size:15 final size:15
Alignment explanation
Indices: 50569741--50569794 Score: 54
Period size: 15 Copynumber: 3.3 Consensus size: 15
50569731 ATACTACAAA
50569741 ATATTTATTATTAAT
1 ATATTTATTATTAAT
*
50569756 ATATTTATAAGTGTAAT
1 ATATTTATTA-T-TAAT
*
50569773 AAATATTTATTATTAAA
1 --ATATTTATTATTAAT
50569790 ATATT
1 ATATT
50569795 AATATTTAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
15 14 0.44
16 1 0.03
17 7 0.22
18 1 0.03
19 9 0.28
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (15 bp):
ATATTTATTATTAAT
Found at i:50569858 original size:16 final size:16
Alignment explanation
Indices: 50569827--50569863 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
50569817 ATGTGAATAA
50569827 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
50569843 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
50569859 TATTA
1 TATTA
50569864 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:50569896 original size:20 final size:20
Alignment explanation
Indices: 50569871--50569931 Score: 67
Period size: 20 Copynumber: 3.1 Consensus size: 20
50569861 TTAAAATAAA
50569871 ATTGAAATATTAAATAATTT
1 ATTGAAATATTAAATAATTT
*
50569891 ATTGAAATAATAAATTATATTT
1 ATTGAAATATTAAA-TA-ATTT
50569913 ATT---ATATT-AATAATTT
1 ATTGAAATATTAAATAATTT
50569929 ATT
1 ATT
50569932 ATATGACTAA
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
16 7 0.19
17 2 0.05
18 2 0.05
19 4 0.11
20 13 0.35
21 2 0.05
22 7 0.19
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (20 bp):
ATTGAAATATTAAATAATTT
Found at i:50569942 original size:16 final size:16
Alignment explanation
Indices: 50569909--50569943 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
50569899 AATAAATTAT
*
50569909 ATTTATTATATTAATA
1 ATTTATTATATGAATA
*
50569925 ATTTATTATATGACTA
1 ATTTATTATATGAATA
50569941 ATT
1 ATT
50569944 GTAAATAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.54
Consensus pattern (16 bp):
ATTTATTATATGAATA
Found at i:50573279 original size:48 final size:47
Alignment explanation
Indices: 50573212--50573323 Score: 170
Period size: 48 Copynumber: 2.4 Consensus size: 47
50573202 AAGTTTGTGG
* *
50573212 ATGAATCACTAGTATTTGCAGATAAACTACCAGTAGTAAAAATTATGA
1 ATGAACCACTAGTATTTGCAGATAAACTACCAGTAGTAAAAA-AATGA
* *
50573260 ATGAACCACTAGTATTTGCAGATAAACTGCCAGTAGTAAAAAAATGG
1 ATGAACCACTAGTATTTGCAGATAAACTACCAGTAGTAAAAAAATGA
*
50573307 ATGAACCACCAGTATTT
1 ATGAACCACTAGTATTT
50573324 TCAATTTAAA
Statistics
Matches: 59, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
47 19 0.32
48 40 0.68
ACGTcount: A:0.42, C:0.15, G:0.16, T:0.27
Consensus pattern (47 bp):
ATGAACCACTAGTATTTGCAGATAAACTACCAGTAGTAAAAAAATGA
Found at i:50584334 original size:20 final size:21
Alignment explanation
Indices: 50584309--50584359 Score: 68
Period size: 20 Copynumber: 2.4 Consensus size: 21
50584299 GGGGTGTGAC
*
50584309 AAAAACATATAAAAATTC-TT
1 AAAAACATATAAAAAATCATT
*
50584329 AAAAACTTATAAAAAATCATT
1 AAAAACATATAAAAAATCATT
50584350 AAAAATCATA
1 AAAAA-CATA
50584360 AAATATTATC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 16 0.62
21 7 0.27
22 3 0.12
ACGTcount: A:0.63, C:0.10, G:0.00, T:0.27
Consensus pattern (21 bp):
AAAAACATATAAAAAATCATT
Found at i:50584430 original size:19 final size:19
Alignment explanation
Indices: 50584406--50584543 Score: 118
Period size: 19 Copynumber: 7.7 Consensus size: 19
50584396 GAATTGATAT
50584406 AAACTTATAAAAATTATAA
1 AAACTTATAAAAATTATAA
*
50584425 AAACTTATAAAGATTATAA
1 AAACTTATAAAAATTATAA
*
50584444 AAAATTAT-AAAA-TAT--
1 AAACTTATAAAAATTATAA
*
50584459 --A-TT-TAAGATATTATAA
1 AAACTTATAA-AAATTATAA
50584475 AAACTTATAAAAATTCATAA
1 AAACTTATAAAAATT-ATAA
50584495 AAA-TTATAATAAATTATAA
1 AAACTTATAA-AAATTATAA
* * *
50584514 AAA-ATAT-AAATTTATTA
1 AAACTTATAAAAATTATAA
50584531 AAACTTATAAAAA
1 AAACTTATAAAAA
50584544 AATCATATAA
Statistics
Matches: 96, Mismatches: 10, Indels: 26
0.73 0.08 0.20
Matches are distributed among these distances:
11 1 0.01
12 3 0.03
13 3 0.03
14 3 0.03
17 13 0.14
18 8 0.08
19 50 0.52
20 15 0.16
ACGTcount: A:0.61, C:0.04, G:0.01, T:0.34
Consensus pattern (19 bp):
AAACTTATAAAAATTATAA
Found at i:50584432 original size:10 final size:9
Alignment explanation
Indices: 50584410--50584543 Score: 126
Period size: 10 Copynumber: 14.0 Consensus size: 9
50584400 TGATATAAAC
50584410 TTATAAAAA
1 TTATAAAAA
50584419 TTATAAAAA
1 TTATAAAAA
*
50584428 CTTATAAAGA
1 -TTATAAAAA
50584438 TTATAAAAAA
1 TTAT-AAAAA
50584448 TTATAAAATA
1 TTATAAAA-A
* *
50584458 TATTTAAGATA
1 T-TATAA-AAA
50584469 TTATAAAAA
1 TTATAAAAA
50584478 CTTATAAAAA
1 -TTATAAAAA
50584488 TTCATAAAAA
1 TT-ATAAAAA
50584498 TTATAATAAA
1 TTATAA-AAA
50584508 TTATAAAAA
1 TTATAAAAA
* *
50584517 ATAT-AAAT
1 TTATAAAAA
*
50584525 TTATTAAAAC
1 TTA-TAAAAA
50584535 TTATAAAAA
1 TTATAAAAA
50584544 AATCATATAA
Statistics
Matches: 104, Mismatches: 11, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
8 5 0.05
9 37 0.36
10 55 0.53
11 6 0.06
12 1 0.01
ACGTcount: A:0.60, C:0.03, G:0.01, T:0.35
Consensus pattern (9 bp):
TTATAAAAA
Found at i:50584475 original size:31 final size:30
Alignment explanation
Indices: 50584412--50584544 Score: 79
Period size: 29 Copynumber: 4.6 Consensus size: 30
50584402 ATATAAACTT
* *
50584412 ATAAAAATTATAAAAACTTATAAAGAT-T-
1 ATAAAAATTATAAAAAATTATAAAAATATC
* *
50584440 ATAAAAAATTATAAAATATATT-T-AAGATATT
1 AT-AAAAATTATAAAA-A-ATTATAAAAATATC
50584471 ATAAAAACTTAT-AAAAATTCATAAAAAT-T-
1 ATAAAAA-TTATAAAAAATT-ATAAAAATATC
**
50584500 ATAATAAATTATAAAAAA-TATAAATTTAT-
1 ATAA-AAATTATAAAAAATTATAAAAATATC
*
50584529 -TAAAACTTATAAAAAA
1 ATAAAAATTATAAAAAA
50584545 ATCATATAAA
Statistics
Matches: 88, Mismatches: 5, Indels: 25
0.75 0.04 0.21
Matches are distributed among these distances:
27 12 0.14
28 14 0.16
29 29 0.33
30 21 0.24
31 12 0.14
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.34
Consensus pattern (30 bp):
ATAAAAATTATAAAAAATTATAAAAATATC
Found at i:50585240 original size:19 final size:19
Alignment explanation
Indices: 50585218--50585261 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
50585208 ATTTTTTTCT
*
50585218 ATTTTTTATAATTTTAATG
1 ATTTTTTATAATTTTAATC
**
50585237 ATTTTTTATGTTTTTAATC
1 ATTTTTTATAATTTTAATC
50585256 ATTTTT
1 ATTTTT
50585262 ATGAGAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.25, C:0.02, G:0.05, T:0.68
Consensus pattern (19 bp):
ATTTTTTATAATTTTAATC
Found at i:50585250 original size:28 final size:28
Alignment explanation
Indices: 50585210--50585265 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
50585200 GTAAATAAAT
* *
50585210 TTTTTTCTATTTTTTATAATTTTAATGA
1 TTTTTTATATTTTTAATAATTTTAATGA
* * *
50585238 TTTTTTATGTTTTTAATCATTTTTATGA
1 TTTTTTATATTTTTAATAATTTTAATGA
50585266 GAAAATATTA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.23, C:0.04, G:0.05, T:0.68
Consensus pattern (28 bp):
TTTTTTATATTTTTAATAATTTTAATGA
Found at i:50587422 original size:20 final size:20
Alignment explanation
Indices: 50587374--50587414 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
50587364 TTACATAAAA
*
50587374 TAATTAAATATAAAATAATT
1 TAATTTAATATAAAATAATT
*
50587394 TAATTTAATA-AAAATTATT
1 TAATTTAATATAAAATAATT
50587413 TA
1 TA
50587415 TTATTAATCC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (20 bp):
TAATTTAATATAAAATAATT
Found at i:50588434 original size:33 final size:33
Alignment explanation
Indices: 50588397--50588467 Score: 88
Period size: 33 Copynumber: 2.2 Consensus size: 33
50588387 CCTAAACTTC
*
50588397 TTTTTGTCCAATTTAATACTTAAACTTGACACT
1 TTTTTGTCCAAATTAATACTTAAACTTGACACT
* ** * *
50588430 TTTTTTTTTAAATTAGTACTTAAACTTGACATT
1 TTTTTGTCCAAATTAATACTTAAACTTGACACT
50588463 TTTTT
1 TTTTT
50588468 TAAGTTGATA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.28, C:0.13, G:0.06, T:0.54
Consensus pattern (33 bp):
TTTTTGTCCAAATTAATACTTAAACTTGACACT
Found at i:50588467 original size:30 final size:31
Alignment explanation
Indices: 50588412--50588484 Score: 96
Period size: 30 Copynumber: 2.3 Consensus size: 31
50588402 GTCCAATTTA
50588412 ATACTTAAACTTGACACTTTTTTTTTTAAATT-
1 ATACTTAAACTTGACA--TTTTTTTTTAAATTG
*
50588444 AGTACTTAAACTTGACA-TTTTTTTTAAGTTG
1 A-TACTTAAACTTGACATTTTTTTTTAAATTG
50588475 ATACTTAAAC
1 ATACTTAAAC
50588485 ACTCTTACCT
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
30 21 0.55
31 1 0.03
32 1 0.03
33 15 0.39
ACGTcount: A:0.33, C:0.12, G:0.07, T:0.48
Consensus pattern (31 bp):
ATACTTAAACTTGACATTTTTTTTTAAATTG
Found at i:50588865 original size:12 final size:12
Alignment explanation
Indices: 50588848--50588873 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
50588838 AAAATAGGGC
50588848 TTTAGCGGCGTT
1 TTTAGCGGCGTT
50588860 TTTAGCGGCGTT
1 TTTAGCGGCGTT
50588872 TT
1 TT
50588874 ATTAAAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTAGCGGCGTT
Found at i:50588968 original size:41 final size:41
Alignment explanation
Indices: 50588923--50589026 Score: 163
Period size: 41 Copynumber: 2.5 Consensus size: 41
50588913 AGTGGCGTAT
* * *
50588923 TTTTGTTAAAACGCTGCTAAAGACCAGAGCATTAGCGGCGC
1 TTTTGGTAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGC
*
50588964 TTTTGGTAAAATGCCGCTAAAAACCAGAGCATTAGCGGCGC
1 TTTTGGTAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGC
*
50589005 TTTTGGTAAAACGCCACTAAAA
1 TTTTGGTAAAACGCCGCTAAAA
50589027 GTTATAAACA
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 57 1.00
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.24
Consensus pattern (41 bp):
TTTTGGTAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGC
Found at i:50589667 original size:24 final size:24
Alignment explanation
Indices: 50589640--50589688 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
50589630 CATGTATTTA
50589640 TTAAAAGTTTATATAAAAATTAAT
1 TTAAAAGTTTATATAAAAATTAAT
50589664 TTAAAAGTTTATATAAAAATTAAT
1 TTAAAAGTTTATATAAAAATTAAT
50589688 T
1 T
50589689 GTTATTTTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (24 bp):
TTAAAAGTTTATATAAAAATTAAT
Found at i:50590208 original size:14 final size:14
Alignment explanation
Indices: 50590189--50590216 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
50590179 AAAAAACTTA
50590189 AATATTTAATATTT
1 AATATTTAATATTT
50590203 AATATTTAATATTT
1 AATATTTAATATTT
50590217 TAGTCTATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
AATATTTAATATTT
Found at i:50590314 original size:10 final size:10
Alignment explanation
Indices: 50590299--50590338 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
50590289 AAAATTTAAA
50590299 AGAAAAAAAT
1 AGAAAAAAAT
50590309 AG-AAAAAAT
1 AGAAAAAAAT
50590318 AGAAAAAAAAT
1 AG-AAAAAAAT
*
50590329 ATAAAAAAAT
1 AGAAAAAAAT
50590339 TAAAATTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
9 9 0.33
10 10 0.37
11 8 0.30
ACGTcount: A:0.80, C:0.00, G:0.07, T:0.12
Consensus pattern (10 bp):
AGAAAAAAAT
Found at i:50590325 original size:11 final size:11
Alignment explanation
Indices: 50590301--50590337 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
50590291 AATTTAAAAG
50590301 AAAAAAATAG-
1 AAAAAAATAGA
50590311 -AAAAAATAGA
1 AAAAAAATAGA
*
50590321 AAAAAAATATA
1 AAAAAAATAGA
50590332 AAAAAA
1 AAAAAA
50590338 TTAAAATTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
9 9 0.38
11 15 0.62
ACGTcount: A:0.84, C:0.00, G:0.05, T:0.11
Consensus pattern (11 bp):
AAAAAAATAGA
Found at i:50592300 original size:9 final size:9
Alignment explanation
Indices: 50592286--50592313 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
50592276 AATAAAAAAA
50592286 TGATGATGC
1 TGATGATGC
50592295 TGATGATGC
1 TGATGATGC
50592304 TGATGATGC
1 TGATGATGC
50592313 T
1 T
50592314 TGATTGCCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.21, C:0.11, G:0.32, T:0.36
Consensus pattern (9 bp):
TGATGATGC
Found at i:50594491 original size:43 final size:43
Alignment explanation
Indices: 50594427--50594585 Score: 234
Period size: 43 Copynumber: 3.7 Consensus size: 43
50594417 CGCTAAAGTC
*
50594427 AAAAA-CGCCGCTAAAGGTCATGATCTTTAGCGGCGTTTGTAG
1 AAAAAGCGTCGCTAAAGGTCATGATCTTTAGCGGCGTTTGTAG
* *
50594469 AAAAAGCGTCGCTAAAGTTCATGATCTTTAGCGGCATTTGTAG
1 AAAAAGCGTCGCTAAAGGTCATGATCTTTAGCGGCGTTTGTAG
* *
50594512 AAAAAGCGTCGCTAAAGGTCTTGATCTTTAGCGGCGTTTGTGG
1 AAAAAGCGTCGCTAAAGGTCATGATCTTTAGCGGCGTTTGTAG
*
50594555 AAAATTGC--CGCTAAAGGTCATGATCTTTAGC
1 AAAA-AGCGTCGCTAAAGGTCATGATCTTTAGC
50594586 TTTTCAAATA
Statistics
Matches: 106, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
42 27 0.25
43 77 0.73
44 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (43 bp):
AAAAAGCGTCGCTAAAGGTCATGATCTTTAGCGGCGTTTGTAG
Found at i:50601922 original size:487 final size:486
Alignment explanation
Indices: 50601009--50601990 Score: 1739
Period size: 487 Copynumber: 2.0 Consensus size: 486
50600999 TAATTTCTAG
50601009 AAAACAAACAGAATATTAGATATTAAGGTATTAAAATCAATATTTGTAGCACAATTTGTAATTAA
1 AAAAC-AACAGAATATTAGATATTAAGGTATTAAAATCAATATTTGTAGCACAATTTGTAATTAA
*
50601074 TGCTACAAGAATGCATCAATATTTGATTTCACAACTTTTATTGTCATATGAAATAAAGAAATGAA
65 TGCTACAAGAATGCATCAATATTTGATTCCACAACTTTTATTGTCATATGAAATAAAGAAATGAA
50601139 TAAATTAATATACATACTGCAAATTTAAATACTTTGAGCTCAATATCATGATTATAAATCTCATA
130 TAAATTAATATACATACTGCAAATTTAAATACTTTGAGCTCAATATCATGATTATAAATCTCATA
* ** * *
50601204 TAGGTATTATCCTAATTCAACAACATCATTTCTTTAGCTTTCAATCAATATAAGCAAAGATAATA
195 GAAATATTATCCTAATTCAACAACATCATTTCCTTAGCTTTCAATCAACATAAGCAAAGATAATA
* *
50601269 TCATCTTAAAGGTTTCTCCAAATTAAATATTGCACAGAATAAAGACATGGTTGCCAATGTTTGTC
260 TCATCTTAAAGGCTTCTCCAAATTAAATATTGCACAGAATAAAGACATGGTTGCCAATGTTTGCC
50601334 AATGTTACTACCAACAAAGAAAAATATGAAATTTAACAAAAGCTTATATATATAATGTTGGAATC
325 AATGTTACTACCAACAAAGAAAAATATGAAATTTAACAAAAGCTTATATATATAATGTTGGAATC
*
50601399 TACATTTGTTAATTAACTAAGAAAATAGAGTGTCTGATTGGAAGTAATGGTTGTGGTGCCCATTA
390 TACATTTGTTAATTAACTAAGAAAATAGAGTGTCTGAATGGAAGTAATGGTTGTGGTGCCCATTA
*
50601464 ATGGCAGTATTGCATCAAGAACAACTAAATAA
455 ATGGCAGCATTGCATCAAGAACAACTAAATAA
* *
50601496 AAAACAACAGAATCTTAGATATTAAAGGTGTTAAAATCAATATTTGTAGCACAATTTGTAATTAA
1 AAAACAACAGAATATTAGATATT-AAGGTATTAAAATCAATATTTGTAGCACAATTTGTAATTAA
* *
50601561 TGCTACAAGAATGCATCAATATTTGATTCCACAACTTTTATTTTCATATGAAATAAAGAAATGCA
65 TGCTACAAGAATGCATCAATATTTGATTCCACAACTTTTATTGTCATATGAAATAAAGAAATGAA
*
50601626 TAAATTAATATACATACTGCAAATTTAAATACTTTGAGCTCAATATCATGATTATAGATCTCATA
130 TAAATTAATATACATACTGCAAATTTAAATACTTTGAGCTCAATATCATGATTATAAATCTCATA
* *
50601691 GAAATATTATCCTAATTCAACACCATCATTTCCTTAGCTTTCAATCAACATAAGCAAAGGTAATA
195 GAAATATTATCCTAATTCAACAACATCATTTCCTTAGCTTTCAATCAACATAAGCAAAGATAATA
* *
50601756 TCATCTTAAAGGCTTCTCCAAATTAAATATTGCAGAGAATAAAGATATGGTTGCCAATGTTTGCC
260 TCATCTTAAAGGCTTCTCCAAATTAAATATTGCACAGAATAAAGACATGGTTGCCAATGTTTGCC
*
50601821 AATGTTACTACCAACAAAGAAAAATCTGAAATTTAACAAAAGCTTATATATATAATGTTGGAATC
325 AATGTTACTACCAACAAAGAAAAATATGAAATTTAACAAAAGCTTATATATATAATGTTGGAATC
*
50601886 TACATTTGTTAATTAACTAAGAAAATAGAGTGTCTGAATGGAAGTAATGGTTGTGGTGCCCATTG
390 TACATTTGTTAATTAACTAAGAAAATAGAGTGTCTGAATGGAAGTAATGGTTGTGGTGCCCATTA
*
50601951 ATGGTAGCATTGCATCAAGAACAACTAAATAA
455 ATGGCAGCATTGCATCAAGAACAACTAAATAA
50601983 AAACACAA
1 AAA-ACAA
50601991 GTTGTTTACG
Statistics
Matches: 471, Mismatches: 22, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
486 17 0.04
487 450 0.96
488 4 0.01
ACGTcount: A:0.41, C:0.14, G:0.13, T:0.32
Consensus pattern (486 bp):
AAAACAACAGAATATTAGATATTAAGGTATTAAAATCAATATTTGTAGCACAATTTGTAATTAAT
GCTACAAGAATGCATCAATATTTGATTCCACAACTTTTATTGTCATATGAAATAAAGAAATGAAT
AAATTAATATACATACTGCAAATTTAAATACTTTGAGCTCAATATCATGATTATAAATCTCATAG
AAATATTATCCTAATTCAACAACATCATTTCCTTAGCTTTCAATCAACATAAGCAAAGATAATAT
CATCTTAAAGGCTTCTCCAAATTAAATATTGCACAGAATAAAGACATGGTTGCCAATGTTTGCCA
ATGTTACTACCAACAAAGAAAAATATGAAATTTAACAAAAGCTTATATATATAATGTTGGAATCT
ACATTTGTTAATTAACTAAGAAAATAGAGTGTCTGAATGGAAGTAATGGTTGTGGTGCCCATTAA
TGGCAGCATTGCATCAAGAACAACTAAATAA
Found at i:50609216 original size:39 final size:38
Alignment explanation
Indices: 50609139--50609216 Score: 86
Period size: 39 Copynumber: 2.0 Consensus size: 38
50609129 TTATGAGTAC
* * **
50609139 TGTGATATATGCTTAAATGTTATGTGATTTTATGTGTAA
1 TGTGATATATGCTTAAAAGTAATGTGA-TTTACATGTAA
50609178 TGTGATATATGCTTAAAAGTGAATGTGA-TTACCATGTAA
1 TGTGATATATGCTTAAAAGT-AATGTGATTTA-CATGTAA
50609217 ATAAACTATT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
38 3 0.09
39 24 0.73
40 6 0.18
ACGTcount: A:0.32, C:0.05, G:0.21, T:0.42
Consensus pattern (38 bp):
TGTGATATATGCTTAAAAGTAATGTGATTTACATGTAA
Found at i:50612602 original size:39 final size:40
Alignment explanation
Indices: 50612507--50612768 Score: 328
Period size: 39 Copynumber: 6.7 Consensus size: 40
50612497 TTGAATGATG
*
50612507 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
50612545 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
50612586 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
50612625 TCCGGGCTAAG-CCCGAAGGCATTTGTACGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
50612664 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
50612703 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
50612742 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
50612769 AACGAGGAGC
Statistics
Matches: 201, Mismatches: 13, Indels: 17
0.87 0.06 0.07
Matches are distributed among these distances:
39 130 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:50619452 original size:13 final size:13
Alignment explanation
Indices: 50619434--50619458 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50619424 CCGAAACTAG
50619434 AAAGAAAAAAAAC
1 AAAGAAAAAAAAC
50619447 AAAGAAAAAAAA
1 AAAGAAAAAAAA
50619459 TGCTCATCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.04, G:0.08, T:0.00
Consensus pattern (13 bp):
AAAGAAAAAAAAC
Found at i:50619930 original size:39 final size:40
Alignment explanation
Indices: 50619835--50620096 Score: 335
Period size: 39 Copynumber: 6.7 Consensus size: 40
50619825 TTGAATGATG
*
50619835 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* **
50619873 ATCCGGACTAAGAACCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
50619914 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
50619953 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
50619992 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
50620031 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
50620070 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
50620097 AATGAGGAGC
Statistics
Matches: 202, Mismatches: 14, Indels: 13
0.88 0.06 0.06
Matches are distributed among these distances:
39 132 0.65
40 58 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:50622374 original size:33 final size:34
Alignment explanation
Indices: 50622321--50622418 Score: 96
Period size: 34 Copynumber: 2.9 Consensus size: 34
50622311 CTGATTGCAT
* *
50622321 ACTG-TACTGATTCT-ATAATGGGCTTAGGCCC-C
1 ACTGATACTAATTCTGA-AATGGGCTAAGGCCCAC
* *
50622353 ACTGATACT-GTTACTGAAATGGGCTCAGGCCCAC
1 ACTGATACTAATT-CTGAAATGGGCTAAGGCCCAC
* *
50622387 ACTGTTTCTAATTCTGAAATGGGCTAAGGCCC
1 ACTGATACTAATTCTGAAATGGGCTAAGGCCC
50622419 TAACTGAAAC
Statistics
Matches: 55, Mismatches: 6, Indels: 8
0.80 0.09 0.12
Matches are distributed among these distances:
32 6 0.11
33 20 0.36
34 27 0.49
35 2 0.04
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.29
Consensus pattern (34 bp):
ACTGATACTAATTCTGAAATGGGCTAAGGCCCAC
Found at i:50629051 original size:5 final size:5
Alignment explanation
Indices: 50629041--50629068 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
50629031 TCATGCATGT
50629041 TTTTA TTTTA TTTTA TTTTA TTTTA TTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTT
50629069 GTTAGCTTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTA
Found at i:50630311 original size:40 final size:40
Alignment explanation
Indices: 50630213--50630396 Score: 255
Period size: 40 Copynumber: 4.6 Consensus size: 40
50630203 TGGATGATAA
*
50630213 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TAT
* *
50630254 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
50630294 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
50630334 CCGGGCTAAGTCCCGAAGGCATTGGCGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
50630374 CTGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
50630397 GAGCGAATAG
Statistics
Matches: 130, Mismatches: 11, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
40 102 0.78
41 24 0.18
42 4 0.03
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:50633633 original size:24 final size:24
Alignment explanation
Indices: 50633601--50633651 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
50633591 CGAATATATT
50633601 CATGTATAAGTAAGTGTAATTAAG
1 CATGTATAAGTAAGTGTAATTAAG
50633625 CATGTATAAGTAAGTGTAATTAAG
1 CATGTATAAGTAAGTGTAATTAAG
50633649 CAT
1 CAT
50633652 ACACAAGTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.41, C:0.06, G:0.20, T:0.33
Consensus pattern (24 bp):
CATGTATAAGTAAGTGTAATTAAG
Found at i:50633659 original size:24 final size:24
Alignment explanation
Indices: 50633608--50633660 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
50633598 ATTCATGTAT
** *
50633608 AAGTAAGTGTAATTAAGCATGTAT
1 AAGTAAGTGTAATTAAGCATACAC
50633632 AAGTAAGTGTAATTAAGCATACAC
1 AAGTAAGTGTAATTAAGCATACAC
50633656 AAGTA
1 AAGTA
50633661 TGCTTTACAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.45, C:0.08, G:0.19, T:0.28
Consensus pattern (24 bp):
AAGTAAGTGTAATTAAGCATACAC
Found at i:50635304 original size:83 final size:81
Alignment explanation
Indices: 50635156--50635306 Score: 205
Period size: 81 Copynumber: 1.8 Consensus size: 81
50635146 TATGATAAAT
* ** * *
50635156 CACCGGCATAAAGCTTGCTAGGCATAAGCTTGTATTACACACCGGCACAAGGCTTGCTAGACTCA
1 CACCGGCATAAAGCCTGCTAGGCATAAGCCCGTATTAAACACCAGCACAAGGCTTGCTAGACTCA
50635221 AAGTCTGATTTTTATA
66 AAGTCTGATTTTTATA
* *
50635237 CACCGGCATTAAGCCTGCTAGGCATAAAGCCCG-ATTAAATTCACCAGCACAAGGCTTGCTAGGC
1 CACCGGCATAAAGCCTGCTAGGCAT-AAGCCCGTATTAAA--CACCAGCACAAGGCTTGCTAGAC
50635301 TCAAAG
63 TCAAAG
50635307 CCCGAATATC
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
81 28 0.47
82 5 0.08
83 27 0.45
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (81 bp):
CACCGGCATAAAGCCTGCTAGGCATAAGCCCGTATTAAACACCAGCACAAGGCTTGCTAGACTCA
AAGTCTGATTTTTATA
Found at i:50644609 original size:48 final size:48
Alignment explanation
Indices: 50644561--50644805 Score: 235
Period size: 48 Copynumber: 5.1 Consensus size: 48
50644551 TAGGATATGA
* * *
50644561 CATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTTTGGGACATGA
1 CATCAGCCATATTATGAGAGCCAGTGTAAGACCATGTTTGGGACATGG
* * * *
50644609 CATCAG-CATTGTTATGAGAGCTAGTGTAAGACCATGTCTGAGACATGG
1 CATCAGCCA-TATTATGAGAGCCAGTGTAAGACCATGTTTGGGACATGG
* * * * *
50644657 CATCAGCCTTAATATGCGAGCCAGTGTAAGACCATATTTGGAACATGG
1 CATCAGCCATATTATGAGAGCCAGTGTAAGACCATGTTTGGGACATGG
* ** * * * *
50644705 CATAAGCTTTGTTAT-ATGTGTCAGTGTAAGACCATGTCTGGGACATGG
1 CATCAGCCATATTATGA-GAGCCAGTGTAAGACCATGTTTGGGACATGG
* *
50644753 CTTCAG-CATCGATGTGTGAGAGCCAGTGTAAGACCATGTTTGGGACATGG
1 CATCAGCCAT--AT-TATGAGAGCCAGTGTAAGACCATGTTTGGGACATGG
50644803 CAT
1 CAT
50644806 TGACATTTTA
Statistics
Matches: 154, Mismatches: 36, Indels: 12
0.76 0.18 0.06
Matches are distributed among these distances:
47 3 0.02
48 116 0.75
49 2 0.01
50 32 0.21
51 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (48 bp):
CATCAGCCATATTATGAGAGCCAGTGTAAGACCATGTTTGGGACATGG
Found at i:50644742 original size:96 final size:98
Alignment explanation
Indices: 50644573--50644805 Score: 303
Period size: 96 Copynumber: 2.4 Consensus size: 98
50644563 TCGGCCACAT
* *
50644573 TATGAGAGCCAGTGTAAGACCATGTTTGGGACATGACATCAGCATTGTTATGAGAGCTAGTGTAA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATAAGCATTGTTATGAGAGCTAGTGTAA
* *
50644638 GACCATGTCTGAGACATGGCATCAGCCT-TA-A
66 GACCATGTCTGAGACATGGCATCAGCATCGATA
* * * * *
50644669 TATGCGAGCCAGTGTAAGACCATATTTGGAACATGGCATAAGCTTTGTTAT-ATGTG-TCAGTGT
1 TATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATAAGCATTGTTATGA-GAGCT-AGTGT
* * *
50644732 AAGACCATGTCTGGGACATGGCTTCAGCATCGATG
64 AAGACCATGTCTGAGACATGGCATCAGCATCGATA
*
50644767 TGTGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCAT
1 TATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCAT
50644806 TGACATTTTA
Statistics
Matches: 117, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
95 2 0.02
96 79 0.68
97 1 0.01
98 35 0.30
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.27
Consensus pattern (98 bp):
TATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATAAGCATTGTTATGAGAGCTAGTGTAA
GACCATGTCTGAGACATGGCATCAGCATCGATA
Found at i:50650030 original size:79 final size:81
Alignment explanation
Indices: 50649897--50650078 Score: 230
Period size: 79 Copynumber: 2.3 Consensus size: 81
50649887 AATGATGTCT
*
50649897 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGT
*
50649961 GCGAGATACTA-ATTCC
66 GCGAGATACTATA-ACC
* * * **
50649977 GGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATTTG
*
50650039 TGCGAGTTACTATAACC
65 TGCGAGATACTATAACC
*
50650056 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
50650079 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 9, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGT
GCGAGATACTATAACC
Found at i:50650092 original size:40 final size:40
Alignment explanation
Indices: 50649897--50650078 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 40
50649887 AATGATGTCT
* * * *
50649897 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACC
* * *
50649937 GGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-ACC
50649977 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CC
*
50650016 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
*
50650056 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
50650079 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
Found at i:50650100 original size:79 final size:79
Alignment explanation
Indices: 50649947--50650111 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
50649937 GGACTAAGAT
* **
50649947 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
50650012 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
50650026 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
50650089 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
50650105 CCGAAGG
1 CCGAAGG
50650112 TATGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:50650372 original size:47 final size:47
Alignment explanation
Indices: 50650303--50650513 Score: 323
Period size: 47 Copynumber: 4.5 Consensus size: 47
50650293 AAGGGTTGGT
50650303 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
50650350 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
50650397 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * * *
50650444 AATGTGAAGGTGTATATATGTGACAGGGCCGAGTGACCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
50650491 GATGTGAAAGTGCATAAATGTGA
1 AATGTGAAAGTGTATATATGTGA
50650514 GCTTGATTTG
Statistics
Matches: 152, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 152 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:50652045 original size:71 final size:71
Alignment explanation
Indices: 50651925--50652088 Score: 188
Period size: 71 Copynumber: 2.3 Consensus size: 71
50651915 GCTTCATTTA
* * * * * **
50651925 TCGGTAGAA-CCCTTCAGAGTATTGATAGAAGTGTAGGGGATACTGAACTTTGGCTACTGACTTT
1 TCGGTAGAAGTCC-TCAAAGTATTGATAGAAGTGCAGGAGATACTAAACTTTGGCTACTGACTAG
*
50651989 ACTTGTT
65 ACTTATT
*
50651996 TCGGTAGAAGTCCTCAAAGTATT-AGTAGAAGTGCAGGAGATGCTAAACTTTGGCTACTGACTAG
1 TCGGTAGAAGTCCTCAAAGTATTGA-TAGAAGTGCAGGAGATACTAAACTTTGGCTACTGACTAG
50652060 ACTTATT
65 ACTTATT
* * *
50652067 TTGGTAGAAGTCGTCAAGGTAT
1 TCGGTAGAAGTCCTCAAAGTAT
50652089 AGGTAGTACT
Statistics
Matches: 79, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
70 1 0.01
71 76 0.96
72 2 0.03
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.32
Consensus pattern (71 bp):
TCGGTAGAAGTCCTCAAAGTATTGATAGAAGTGCAGGAGATACTAAACTTTGGCTACTGACTAGA
CTTATT
Found at i:50657134 original size:37 final size:37
Alignment explanation
Indices: 50657084--50657162 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
50657074 TTATTACGAA
* *
50657084 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
50657121 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
50657158 GTCTT
1 GTCTT
50657163 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:50657368 original size:47 final size:47
Alignment explanation
Indices: 50657281--50657811 Score: 792
Period size: 47 Copynumber: 10.9 Consensus size: 47
50657271 CCCTTCGGAA
* * * * * *
50657281 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
50657328 CCTGTCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50657375 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50657422 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50657471 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50657518 CCTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50657567 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50657614 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50657661 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50657710 CTTATCACATATATACACTTTCACATTCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATAT--A---T---A--CACTTTCACATTCATCACATCGGCCATTAGGC
50657769 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATT
50657812 CGCCATACTA
Statistics
Matches: 450, Mismatches: 18, Indels: 32
0.90 0.04 0.06
Matches are distributed among these distances:
47 256 0.57
49 145 0.32
51 1 0.00
52 1 0.00
54 1 0.00
55 1 0.00
57 5 0.01
59 40 0.09
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:50657466 original size:96 final size:96
Alignment explanation
Indices: 50657281--50657811 Score: 827
Period size: 96 Copynumber: 5.4 Consensus size: 96
50657271 CCCTTCGGAA
* * * * * * * *
50657281 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGT--CATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
50657344 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
50657375 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
50657440 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
50657471 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
50657536 ACTTTCACATTCATCACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
50657567 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
50657630 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
50657661 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT--
50657726 ACTTTCACATTCACTTTCACATTCATCACATCGGCCATTAGGC
62 A---T---A--CACTTTCACATTCATCACATCGGCCATTAGGC
50657769 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATT
50657812 CGCCATACTA
Statistics
Matches: 407, Mismatches: 14, Indels: 20
0.92 0.03 0.05
Matches are distributed among these distances:
94 89 0.22
96 236 0.58
98 4 0.01
100 1 0.00
103 1 0.00
106 36 0.09
108 40 0.10
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:50657579 original size:143 final size:144
Alignment explanation
Indices: 50657281--50657811 Score: 827
Period size: 143 Copynumber: 3.6 Consensus size: 144
50657271 CCCTTCGGAA
* * * * * * * * *
50657281 CTTATCAC-ATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCATATATATACA
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
50657345 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCAC
66 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCAC
50657408 ATCGGCTATTAGGC
131 ATCGGCTATTAGGC
50657422 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
50657487 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCA
65 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
50657552 CATCGGCTATTAGGC
130 CATCGGCTATTAGGC
50657567 CTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
50657631 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCAC
66 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCAC
*
50657696 ATCGGCCATTAGGC
131 ATCGGCTATTAGGC
50657710 CTTATCACATATATACACTTTCACATTCACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
1 CTTATCACA-ATAT--A---T---A--CACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
50657775 ACATATATACACTTTCACATTCATCACATCGGCCATT
55 ACATATATACACTTTCACATTCATCACATCGGCCATT
50657812 CGCCATACTA
Statistics
Matches: 362, Mismatches: 12, Indels: 18
0.92 0.03 0.05
Matches are distributed among these distances:
141 8 0.02
143 225 0.62
145 51 0.14
147 1 0.00
150 1 0.00
153 1 0.00
155 75 0.21
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (144 bp):
CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCAC
ATCGGCTATTAGGC
Found at i:50657742 original size:12 final size:12
Alignment explanation
Indices: 50657725--50657750 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
50657715 CACATATATA
50657725 CACTTTCACATT
1 CACTTTCACATT
50657737 CACTTTCACATT
1 CACTTTCACATT
50657749 CA
1 CA
50657751 TCACATCGGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.35, G:0.00, T:0.38
Consensus pattern (12 bp):
CACTTTCACATT
Found at i:50657749 original size:59 final size:59
Alignment explanation
Indices: 50657678--50657797 Score: 240
Period size: 59 Copynumber: 2.0 Consensus size: 59
50657668 CATATATATA
50657678 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
50657737 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
50657796 CA
1 CA
50657798 TCACATCGGC
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 61 1.00
ACGTcount: A:0.29, C:0.31, G:0.07, T:0.33
Consensus pattern (59 bp):
CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
Found at i:50666345 original size:42 final size:43
Alignment explanation
Indices: 50666299--50666421 Score: 121
Period size: 42 Copynumber: 2.9 Consensus size: 43
50666289 TTACATGGAA
50666299 TCTCGTATTGATGCCAATAGCC-A-ACTATGGTG-TTACACAAAG
1 TCTCGTATTGATGCCAATAGCCTAGA-TATGG-GCTTACACAAAG
* * **
50666341 TCTCGTATCGATGCC-ATATCCTAGATATGGGCTTACACGTAG
1 TCTCGTATTGATGCCAATAGCCTAGATATGGGCTTACACAAAG
* ** *
50666383 TCTCATATTGATGCC-ATATTCTAGATATGGTCTTACACA
1 TCTCGTATTGATGCCAATAGCCTAGATATGGGCTTACACA
50666422 TAGACTTAGT
Statistics
Matches: 69, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
41 6 0.09
42 62 0.90
43 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.33
Consensus pattern (43 bp):
TCTCGTATTGATGCCAATAGCCTAGATATGGGCTTACACAAAG
Found at i:50682046 original size:37 final size:37
Alignment explanation
Indices: 50681996--50682074 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
50681986 TTATTACGAA
* * *
50681996 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
50682033 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
50682070 GTCTT
1 GTCTT
50682075 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Done.