Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 157 of 356
Found at i:50682303 original size:47 final size:47
Alignment explanation
Indices: 50682192--50682696 Score: 947
Period size: 47 Copynumber: 10.7 Consensus size: 47
50682182 GCCCTTCGGG
*
50682192 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
50682242 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
50682289 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
50682336 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
50682383 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
50682430 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATTTAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
50682477 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
50682524 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
50682571 ACTTTCACATTCATCACATCAGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
50682618 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
50682665 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
50682697 ATACTATCAT
Statistics
Matches: 448, Mismatches: 7, Indels: 3
0.98 0.02 0.01
Matches are distributed among these distances:
47 410 0.92
49 34 0.08
50 4 0.01
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:50686500 original size:40 final size:40
Alignment explanation
Indices: 50686214--50686554 Score: 375
Period size: 40 Copynumber: 8.5 Consensus size: 40
50686204 AGCATGATTA
* * * *
50686214 CTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* ** * * *
50686254 CTCTTTGGGGTTTAGCACAGATATATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
*
50686294 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* * *
50686334 CTCCTCGGGACTTAGCCCGGATATATCACTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* *
50686374 CTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* *
50686414 CTCTTTGGGACTTAGCCCGGATACATCACTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
** * * *
50686454 CTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATG
1 CTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAATG
* ** *
50686495 C-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AAAG
1 CTCTTCGGGA-CTTAGCCCGGATA-CATCAC-TAGCACGAATG
50686535 C-CTTCGGGACTTAGCCCGGA
1 CTCTTCGGGACTTAGCCCGGA
50686555 CATCATTCGA
Statistics
Matches: 257, Mismatches: 39, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
39 3 0.01
40 234 0.91
41 20 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
Found at i:50686902 original size:29 final size:29
Alignment explanation
Indices: 50686860--50686938 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
50686850 CTTAATAATC
* *
50686860 AACCACGCATACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
50686890 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
50686919 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
50686939 ATCTCACAAC
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
28 3 0.07
29 37 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:50686981 original size:43 final size:43
Alignment explanation
Indices: 50686920--50687022 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
50686910 TGCATTTCAA
50686920 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
50686963 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
50687006 TCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
50687023 TGAAAACCAA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.26, C:0.36, G:0.15, T:0.23
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:50689490 original size:29 final size:28
Alignment explanation
Indices: 50689455--50689529 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 28
50689445 TGAGATTGGT
50689455 ACTAAGTGTGCGGGTTTAAATTGTACA-GC
1 ACTAAGTGTGCGGGTTTAAA--GTACAGGC
*
50689484 ACTAAGTGTGCGAGTTTAAAGTACATGGC
1 ACTAAGTGTGCGGGTTTAAAGTACA-GGC
50689513 ACTAAGTGTGCGTGGTT
1 ACTAAGTGTGCG-GGTT
50689530 GATTATTAAG
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
27 5 0.12
29 33 0.80
30 3 0.07
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (28 bp):
ACTAAGTGTGCGGGTTTAAAGTACAGGC
Found at i:50689747 original size:174 final size:174
Alignment explanation
Indices: 50689482--50689809 Score: 593
Period size: 174 Copynumber: 1.9 Consensus size: 174
50689472 AAATTGTACA
* *
50689482 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACAAGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
50689547 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
50689612 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* **
50689656 GCACTAAGTGTGTGAGTTTAAAGTGTAAGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACAAGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
50689721 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
50689786 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
50689810 ACCTTGAGTT
Statistics
Matches: 147, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
174 147 1.00
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACAAGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:50697661 original size:29 final size:28
Alignment explanation
Indices: 50697625--50697702 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
50697615 TCATGAGATT
50697625 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
50697655 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
50697682 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
50697703 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:50697920 original size:174 final size:174
Alignment explanation
Indices: 50697655--50697982 Score: 611
Period size: 174 Copynumber: 1.9 Consensus size: 174
50697645 AAATTGTACA
50697655 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
** *
50697720 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACAAGAAGGGTGCGACTTTACCGAGTCAA
50697785 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
50697829 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
50697894 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACAAGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACAAGAAGGGTGCGACTTTACCGAGTCAA
50697959 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
50697983 ACCTTGAGTT
Statistics
Matches: 149, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 149 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACAAGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:50700490 original size:37 final size:37
Alignment explanation
Indices: 50700429--50700507 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
50700419 TTATTACGAA
* * * *
50700429 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
*
50700466 GTCTTACCCAGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
50700503 GTCTT
1 GTCTT
50700508 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
Found at i:50700790 original size:47 final size:47
Alignment explanation
Indices: 50700625--50701037 Score: 736
Period size: 47 Copynumber: 8.7 Consensus size: 47
50700615 GCCCTTCGGG
*
50700625 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
50700675 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATGTAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA--TAC
50700724 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
50700771 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
50700818 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
50700865 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCGCATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
50700912 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
50700959 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
50701006 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
50701038 ATACTATCAT
Statistics
Matches: 354, Mismatches: 7, Indels: 7
0.96 0.02 0.02
Matches are distributed among these distances:
47 269 0.76
49 81 0.23
50 4 0.01
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:50703505 original size:30 final size:30
Alignment explanation
Indices: 50703469--50703528 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
50703459 TGTATGTAAA
50703469 CCTCATATCATTAGCTTCATACATGAAAGG
1 CCTCATATCATTAGCTTCATACATGAAAGG
50703499 CCTCATATCATTAGCTTCATACATGAAAGG
1 CCTCATATCATTAGCTTCATACATGAAAGG
50703529 TTATTTCTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.33, C:0.23, G:0.13, T:0.30
Consensus pattern (30 bp):
CCTCATATCATTAGCTTCATACATGAAAGG
Found at i:50710303 original size:43 final size:43
Alignment explanation
Indices: 50710150--50710304 Score: 154
Period size: 43 Copynumber: 3.6 Consensus size: 43
50710140 TGTTATCATC
* * *
50710150 TAAGACCACGTCTGGGACTTTGGCATCGACT-TATGATTTACGTG
1 TAAGACCACGTCTGGGACGTTGGCATCGA-TATTTGA-TTACATG
* * * *
50710194 TAAGACCACGTCTGGGATGTTAGCATC-ATACTTGATTTCATG
1 TAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACATG
* * *
50710236 TAAGACC-CTATCTTGGACGGTGGCATCGATATTTGATTACATG
1 TAAGACCAC-GTCTGGGACGTTGGCATCGATATTTGATTACATG
* *
50710279 TAAGACCACGTCTGAGACATTGGCAT
1 TAAGACCACGTCTGGGACGTTGGCAT
50710305 TGTAGGAGCT
Statistics
Matches: 88, Mismatches: 19, Indels: 9
0.76 0.16 0.08
Matches are distributed among these distances:
41 1 0.01
42 26 0.30
43 36 0.41
44 25 0.28
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (43 bp):
TAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACATG
Found at i:50712446 original size:18 final size:18
Alignment explanation
Indices: 50712391--50712436 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 18
50712381 TGGTTCATGT
50712391 TTTCAA-TCTCATATCTCAA
1 TTTCAATTCTCA-AT-TCAA
50712410 TTTCAATTCTCAATTCAA
1 TTTCAATTCTCAATTCAA
50712428 TTTCTAATT
1 TTTC-AATT
50712437 TCATTCCAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 8 0.32
19 12 0.48
20 5 0.20
ACGTcount: A:0.30, C:0.22, G:0.00, T:0.48
Consensus pattern (18 bp):
TTTCAATTCTCAATTCAA
Found at i:50712675 original size:23 final size:23
Alignment explanation
Indices: 50712593--50712679 Score: 92
Period size: 21 Copynumber: 4.0 Consensus size: 23
50712583 CCTGATCAGT
*
50712593 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACAAAGTGCCTGAA
* *
50712615 A-ACGACACACGAGGTGCCTG--
1 ATACGACACACAAAGTGCCTGAA
* *
50712635 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTGAA
*
50712658 ATACGACACATAAAGTGCCTGA
1 ATACGACACACAAAGTGCCTGA
50712680 TCGATAAAGC
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
20 1 0.02
21 34 0.62
22 1 0.02
23 19 0.35
ACGTcount: A:0.38, C:0.25, G:0.22, T:0.15
Consensus pattern (23 bp):
ATACGACACACAAAGTGCCTGAA
Found at i:50713076 original size:15 final size:15
Alignment explanation
Indices: 50713051--50713108 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
50713041 TCATATATAT
50713051 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
50713067 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
50713082 AATAATTTCAATCAA
1 TATAAATTCAATCAA
50713097 TATAAATTCAAT
1 TATAAATTCAAT
50713109 AAAACAGATA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:50713093 original size:30 final size:28
Alignment explanation
Indices: 50713054--50713112 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 28
50713044 TATATATTAT
50713054 ATAATTCAATCAATATAAATTCAATCAAA
1 ATAATTCAATCAATATAAATTCAAT-AAA
50713083 ATAATTTCAATCAATATAAATTCAATAAA
1 ATAA-TTCAATCAATATAAATTCAATAAA
50713112 A
1 A
50713113 CAGATATTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 8 0.28
30 21 0.72
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.32
Consensus pattern (28 bp):
ATAATTCAATCAATATAAATTCAATAAA
Found at i:50722412 original size:28 final size:28
Alignment explanation
Indices: 50722364--50722454 Score: 139
Period size: 28 Copynumber: 3.2 Consensus size: 28
50722354 GTGACAGAGT
*
50722364 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCAGTGC
*
50722393 CACCAGAACAGATAATTTGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCAGTGC
50722421 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGATAATTTGTGGCAGT-GC
50722449 CACCAG
1 CACCAG
50722455 GACGCTTCCT
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
28 51 0.88
29 7 0.12
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.21
Consensus pattern (28 bp):
CACCAGAACAGATAATTTGTGGCAGTGC
Found at i:50722607 original size:28 final size:28
Alignment explanation
Indices: 50722560--50722624 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
50722550 AAATTAACCC
*
50722560 TAGGGGTATAAAGGTCATTTAGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
* *
50722588 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
50722616 TAGGGGTAT
1 TAGGGGTAT
50722625 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTAGCATACA
Found at i:50732201 original size:9 final size:9
Alignment explanation
Indices: 50732187--50732212 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
50732177 CTAGTAAGAT
50732187 TTTTGAGCC
1 TTTTGAGCC
50732196 TTTTGAGCC
1 TTTTGAGCC
50732205 TTTTGAGC
1 TTTTGAGC
50732213 ATCTATCCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.12, C:0.19, G:0.23, T:0.46
Consensus pattern (9 bp):
TTTTGAGCC
Found at i:50736792 original size:21 final size:21
Alignment explanation
Indices: 50736766--50736825 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 21
50736756 AAACCTGCAT
50736766 TAGAATGGCTAATACTTATCA
1 TAGAATGGCTAATACTTATCA
50736787 TAGAATGG---AT--TTAATCA
1 TAGAATGGCTAATACTT-ATCA
* *
50736804 TATAATGGCTACTACTTATCA
1 TAGAATGGCTAATACTTATCA
50736825 T
1 T
50736826 CTGCAAACCA
Statistics
Matches: 31, Mismatches: 2, Indels: 12
0.69 0.04 0.27
Matches are distributed among these distances:
16 2 0.06
17 11 0.35
18 2 0.06
20 1 0.03
21 13 0.42
22 2 0.06
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37
Consensus pattern (21 bp):
TAGAATGGCTAATACTTATCA
Found at i:50739251 original size:21 final size:21
Alignment explanation
Indices: 50739200--50739251 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
50739190 CACTATGGTT
* *
50739200 GAAAAGGAAGTTGATGTTGCA
1 GAAAAGGAAGTTGATGCTGAA
* *
50739221 GAAGAGGAAGTTGTTGCTGAA
1 GAAAAGGAAGTTGATGCTGAA
*
50739242 GAAAAAGAAG
1 GAAAAGGAAG
50739252 CTTCAAAAAA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.42, C:0.04, G:0.35, T:0.19
Consensus pattern (21 bp):
GAAAAGGAAGTTGATGCTGAA
Found at i:50739943 original size:38 final size:38
Alignment explanation
Indices: 50739900--50739975 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
50739890 TTCATCCTTT
50739900 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
50739938 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
50739976 GGAGTTCTTC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.32
Consensus pattern (38 bp):
TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
Found at i:50741257 original size:40 final size:40
Alignment explanation
Indices: 50741163--50741343 Score: 197
Period size: 40 Copynumber: 4.5 Consensus size: 40
50741153 TACTCGAATG
* *
50741163 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACT
* *
50741204 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGTGACT
* *
50741244 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * * * **
50741284 ATATCCGGGTTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
**
50741323 ATATCC-GGCTAAACCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
50741344 ATGCTTGATT
Statistics
Matches: 119, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
38 12 0.10
39 16 0.13
40 62 0.52
41 28 0.24
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:50748785 original size:29 final size:29
Alignment explanation
Indices: 50748751--50748824 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
50748741 TAATCAACCA
*
50748751 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
50748780 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
50748809 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
50748825 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:50756873 original size:29 final size:29
Alignment explanation
Indices: 50756839--50756912 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
50756829 TAATCAACCA
*
50756839 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
50756868 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
50756897 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
50756913 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:50760971 original size:39 final size:38
Alignment explanation
Indices: 50760821--50760993 Score: 139
Period size: 39 Copynumber: 4.6 Consensus size: 38
50760811 TATCGGATAA
*
50760821 CCGGCTAA-TCCCGAAGGCATTTGTGCTA-TGGACTA-ATT
1 CCGGCTAAGTCCCGAAGGCATTTGTGCGACT--ACTATA-T
* *
50760859 CCGGGCTAAGTCTCGAAGG-A-TTGTTGCGAGTTACTA-AT
1 CC-GGCTAAGTCCCGAAGGCATTTG-TGCGA-CTACTATAT
** *
50760897 TTGGCTAAGTCCCGAA-GCA-TTGTGCGATTACTATAT
1 CCGGCTAAGTCCCGAAGGCATTTGTGCGACTACTATAT
50760933 CCGGCTAAAGTCCCGAAGGCATTTGTGCGAACTA-TATAT
1 CCGGCT-AAGTCCCGAAGGCATTTGTGCG-ACTACTATAT
**
50760972 CCGGCTAAGTCCTAAAGGCATT
1 CCGGCTAAGTCCCGAAGGCATT
50760994 CGACGCAGTG
Statistics
Matches: 114, Mismatches: 10, Indels: 22
0.78 0.07 0.15
Matches are distributed among these distances:
35 6 0.05
36 12 0.11
37 27 0.24
38 23 0.20
39 34 0.30
40 11 0.10
41 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.28
Consensus pattern (38 bp):
CCGGCTAAGTCCCGAAGGCATTTGTGCGACTACTATAT
Found at i:50768672 original size:39 final size:40
Alignment explanation
Indices: 50768579--50768778 Score: 286
Period size: 40 Copynumber: 5.1 Consensus size: 40
50768569 TGGATGATAA
* * *
50768579 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
50768619 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
50768658 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
50768698 CCGGGCTAAGT-CCGAAGGCA-TT-TGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
50768735 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
50768775 CCGG
1 CCGG
50768779 TTAAATCCGA
Statistics
Matches: 148, Mismatches: 6, Indels: 12
0.89 0.04 0.07
Matches are distributed among these distances:
37 25 0.17
38 11 0.07
39 50 0.34
40 62 0.42
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:50768710 original size:79 final size:77
Alignment explanation
Indices: 50768579--50768791 Score: 281
Period size: 79 Copynumber: 2.8 Consensus size: 77
50768569 TGGATGATAA
* * *
50768579 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-TCCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTA-TATCCGGGCTAAGT-CCGAAGGCA-TT
50768643 GTGCGAGTTACTA-AT
63 -TGCGAGTTACTATAT
*
50768658 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCGAAGGCATTTGC
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATATCCGGGCTAAGTCCGAAGGCATTTGC
50768723 GAGTTACTATAT
66 GAGTTACTATAT
* * * *
50768735 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATATCC-GGTTAAATCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTA-CTATATCCGGGCTAAGTCCGAAGG
50768792 TACTTGGTTG
Statistics
Matches: 123, Mismatches: 8, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
76 27 0.22
77 40 0.33
78 10 0.08
79 46 0.37
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (77 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATATCCGGGCTAAGTCCGAAGGCATTTGC
GAGTTACTATAT
Found at i:50786637 original size:29 final size:29
Alignment explanation
Indices: 50786595--50786668 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 29
50786585 TAATCAACCA
* *
50786595 CGCACCCTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
50786624 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
50786653 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
50786669 ATCTCACAAC
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 3 0.08
29 36 0.92
ACGTcount: A:0.24, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:50791350 original size:38 final size:38
Alignment explanation
Indices: 50791308--50791383 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
50791298 TTCATCCTTT
50791308 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
50791346 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
50791384 GGAGTTCTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.32
Consensus pattern (38 bp):
TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
Found at i:50793018 original size:37 final size:37
Alignment explanation
Indices: 50792957--50793035 Score: 97
Period size: 37 Copynumber: 2.1 Consensus size: 37
50792947 TTATTACGAA
* * * *
50792957 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCAGACAAAATCTCCACAAGAAGTCATCGG
*
50792994 GTCTTACCCAGACAAAAT-TCCCACAAGTAGTCATCGG
1 GTCTTACCCAGACAAAATCT-CCACAAGAAGTCATCGG
50793031 GTCTT
1 GTCTT
50793036 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
36 1 0.03
37 35 0.97
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCAGACAAAATCTCCACAAGAAGTCATCGG
Found at i:50793232 original size:47 final size:47
Alignment explanation
Indices: 50793154--50793817 Score: 1069
Period size: 47 Copynumber: 14.1 Consensus size: 47
50793144 CCCTTCGGGA
* * * * * * *
50793154 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*** * *
50793201 CCCGTCACATATATACACTTTCACAGTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50793248 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50793295 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50793342 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50793389 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50793436 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50793483 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50793530 CTTATCACAGATATATACA-TTTACACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTT-CACATTCATCACATCGGCCATTAGGC
*
50793579 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
50793626 CTTATCACACATATATACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50793673 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50793720 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50793767 CTTATCACATATTTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50793814 CTTA
1 CTTA
50793818 CTATCATTTC
Statistics
Matches: 583, Mismatches: 30, Indels: 8
0.94 0.05 0.01
Matches are distributed among these distances:
47 536 0.92
48 6 0.01
49 41 0.07
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:50797452 original size:40 final size:40
Alignment explanation
Indices: 50797358--50797525 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
50797348 TACTCGAATG
* *
50797358 ATATCCAGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACT
* * *
50797399 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGTGACT
* *
50797439 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * * * **
50797479 ATATCCGGGTTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
50797518 ATATCCGG
1 ATATCCGG
50797526 TTAAACCCCG
Statistics
Matches: 107, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.57
41 27 0.25
42 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:50801420 original size:33 final size:33
Alignment explanation
Indices: 50801383--50801447 Score: 112
Period size: 33 Copynumber: 2.0 Consensus size: 33
50801373 ACATGTTCCA
* *
50801383 GAAGTGTTTTTTCTATCTAACTTGGATCCTCCG
1 GAAGTGCTTTTTCTATCTAACTTGCATCCTCCG
50801416 GAAGTGCTTTTTCTATCTAACTTGCATCCTCC
1 GAAGTGCTTTTTCTATCTAACTTGCATCCTCC
50801448 AAAATCCACA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.18, C:0.25, G:0.15, T:0.42
Consensus pattern (33 bp):
GAAGTGCTTTTTCTATCTAACTTGCATCCTCCG
Found at i:50804854 original size:43 final size:42
Alignment explanation
Indices: 50804768--50804886 Score: 141
Period size: 43 Copynumber: 2.8 Consensus size: 42
50804758 CATAGGATTT
* * ** *
50804768 TCGATATGTGTTCTCATGTAAGACCATGTCTAGGATGTTGGCA
1 TCGATATGTGAT-TCATGTAAGACCATGTCTGGGACATCGGCA
50804811 TCGATATGTGATTACATGTAAGACCATGTCTGGGACATCGGCA
1 TCGATATGTGATT-CATGTAAGACCATGTCTGGGACATCGGCA
* * *
50804854 TCG-TATTTGATTCGTGTAAGACCCTGTCTGGGA
1 TCGATATGTGATTCATGTAAGACCATGTCTGGGA
50804887 TAGTTATGAA
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
41 19 0.28
42 9 0.13
43 39 0.58
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.33
Consensus pattern (42 bp):
TCGATATGTGATTCATGTAAGACCATGTCTGGGACATCGGCA
Found at i:50808401 original size:39 final size:40
Alignment explanation
Indices: 50808304--50808401 Score: 137
Period size: 40 Copynumber: 2.5 Consensus size: 40
50808294 CGGATGATAA
* * *
50808304 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCAGTTGAGCGAGTTACTATAT
50808344 CCGGGCTAAGTCCCGAAGGCAGTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCAGTTGAGCGAGTTA-CTATAT
*
50808384 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
50808402 TACTTGGTTT
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
39 17 0.32
40 36 0.68
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCAGTTGAGCGAGTTACTATAT
Found at i:50815455 original size:21 final size:22
Alignment explanation
Indices: 50815415--50815458 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
50815405 ATGCAACCCA
* *
50815415 TCCCATAACCATCCAGCACACC
1 TCCCATAACCAACCAACACACC
50815437 TCCCAT-ACCAACCAACACACC
1 TCCCATAACCAACCAACACACC
50815458 T
1 T
50815459 GTGGGGATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.34, C:0.50, G:0.02, T:0.14
Consensus pattern (22 bp):
TCCCATAACCAACCAACACACC
Found at i:50815666 original size:20 final size:20
Alignment explanation
Indices: 50815641--50815683 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
50815631 ACGTGTATGT
50815641 AGTATGTCATACTCATAACC
1 AGTATGTCATACTCATAACC
50815661 AGTATGTCATACTCATAACC
1 AGTATGTCATACTCATAACC
50815681 AGT
1 AGT
50815684 CATATAAATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.35, C:0.23, G:0.12, T:0.30
Consensus pattern (20 bp):
AGTATGTCATACTCATAACC
Found at i:50819284 original size:22 final size:22
Alignment explanation
Indices: 50819259--50819329 Score: 81
Period size: 22 Copynumber: 3.3 Consensus size: 22
50819249 GTTCTAGGGT
50819259 CACACGAGCATGTCCCTTGGAC
1 CACACGAGCATGTCCCTTGGAC
* * ** *
50819281 CACACGGGCATGTTCCAAGG-T
1 CACACGAGCATGTCCCTTGGAC
*
50819302 CACACGAGCGTGTCCCTTGGAC
1 CACACGAGCATGTCCCTTGGAC
50819324 CACACG
1 CACACG
50819330 GGTGTGTGAG
Statistics
Matches: 37, Mismatches: 11, Indels: 2
0.74 0.22 0.04
Matches are distributed among these distances:
21 15 0.41
22 22 0.59
ACGTcount: A:0.23, C:0.35, G:0.25, T:0.17
Consensus pattern (22 bp):
CACACGAGCATGTCCCTTGGAC
Found at i:50823152 original size:54 final size:54
Alignment explanation
Indices: 50823069--50823197 Score: 179
Period size: 54 Copynumber: 2.4 Consensus size: 54
50823059 CCCCAGATTT
* *
50823069 TAAAATTACCGAAATACCCCTGGTTTGTAAAATTACAAAAATACCCTTGTAGTG
1 TAAAATTACCGAAATACCCCTGGTGTGTAAAATTACAAAAATACCCTTATAGTG
* ***
50823123 TAAAATTATCGAAATACCCCT-GTAGTGTAAAATTATTGAAATACCCTTATAGTG
1 TAAAATTACCGAAATACCCCTGGT-GTGTAAAATTACAAAAATACCCTTATAGTG
*
50823177 TAAAATTACCAAAATACCCCT
1 TAAAATTACCGAAATACCCCT
50823198 ATAGGGAAAA
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
53 2 0.03
54 64 0.97
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.30
Consensus pattern (54 bp):
TAAAATTACCGAAATACCCCTGGTGTGTAAAATTACAAAAATACCCTTATAGTG
Found at i:50823201 original size:27 final size:27
Alignment explanation
Indices: 50823069--50823197 Score: 152
Period size: 27 Copynumber: 4.8 Consensus size: 27
50823059 CCCCAGATTT
*
50823069 TAAAATTACCGAAATACCCCTGGT-TTG
1 TAAAATTACCGAAATACCCCT-GTAGTG
** *
50823096 TAAAATTACAAAAATACCCTTGTAGTG
1 TAAAATTACCGAAATACCCCTGTAGTG
*
50823123 TAAAATTATCGAAATACCCCTGTAGTG
1 TAAAATTACCGAAATACCCCTGTAGTG
** * *
50823150 TAAAATTATTGAAATACCCTTATAGTG
1 TAAAATTACCGAAATACCCCTGTAGTG
*
50823177 TAAAATTACCAAAATACCCCT
1 TAAAATTACCGAAATACCCCT
50823198 ATAGGGAAAA
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
26 2 0.02
27 84 0.98
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.30
Consensus pattern (27 bp):
TAAAATTACCGAAATACCCCTGTAGTG
Found at i:50823209 original size:54 final size:54
Alignment explanation
Indices: 50823107--50823209 Score: 152
Period size: 54 Copynumber: 1.9 Consensus size: 54
50823097 AAAATTACAA
* * * * * *
50823107 AAATACCCTTGTAGTGTAAAATTATCGAAATACCCCTGTAGTGTAAAATTATTG
1 AAATACCCTTATAGTGTAAAATTACCAAAATACCCCTATAGGGAAAAATTATTG
50823161 AAATACCCTTATAGTGTAAAATTACCAAAATACCCCTATAGGGAAAAAT
1 AAATACCCTTATAGTGTAAAATTACCAAAATACCCCTATAGGGAAAAAT
50823210 GACTATTTTA
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 43 1.00
ACGTcount: A:0.42, C:0.17, G:0.13, T:0.29
Consensus pattern (54 bp):
AAATACCCTTATAGTGTAAAATTACCAAAATACCCCTATAGGGAAAAATTATTG
Found at i:50823657 original size:27 final size:28
Alignment explanation
Indices: 50823627--50823687 Score: 90
Period size: 27 Copynumber: 2.2 Consensus size: 28
50823617 GTGCCAATTG
*
50823627 TATTTACATG-TGGCTCTGTGTTGATCA
1 TATTTACATGATGACTCTGTGTTGATCA
*
50823654 TATTTA-TTGATGACTCTGTGTTGATCA
1 TATTTACATGATGACTCTGTGTTGATCA
50823681 TATTTAC
1 TATTTAC
50823688 CCATGGCTGT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
26 2 0.07
27 28 0.93
ACGTcount: A:0.21, C:0.13, G:0.18, T:0.48
Consensus pattern (28 bp):
TATTTACATGATGACTCTGTGTTGATCA
Found at i:50823700 original size:27 final size:27
Alignment explanation
Indices: 50823637--50823700 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 27
50823627 TATTTACATG
***
50823637 TGGCTCTGTGTTGATCATATTTATTGA
1 TGGCTCTGTGTTGATCATATTTACCCA
*
50823664 TGACTCTGTGTTGATCATATTTACCCA
1 TGGCTCTGTGTTGATCATATTTACCCA
*
50823691 TGGCTGTGTG
1 TGGCTCTGTG
50823701 CCGATTATAT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.17, C:0.16, G:0.23, T:0.44
Consensus pattern (27 bp):
TGGCTCTGTGTTGATCATATTTACCCA
Found at i:50830696 original size:15 final size:15
Alignment explanation
Indices: 50830676--50830727 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
50830666 AATACAAAAC
50830676 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
50830691 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
50830710 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
50830725 ATT
1 ATT
50830728 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:50830791 original size:16 final size:16
Alignment explanation
Indices: 50830760--50830796 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
50830750 ATGTGAATAA
50830760 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
50830776 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
50830792 TATTA
1 TATTA
50830797 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:50830848 original size:22 final size:22
Alignment explanation
Indices: 50830808--50830863 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
50830798 AATAAAATTG
*
50830808 AAATATTAAA-TA-ATTTATTA
1 AAATAATAAATTATATTTATTA
50830828 AAATAATAAATTATATTTATTA
1 AAATAATAAATTATATTTATTA
* * *
50830850 TATTAATAATTTAT
1 AAATAATAAATTAT
50830864 TATATGACTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 9 0.30
21 2 0.07
22 19 0.63
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
AAATAATAAATTATATTTATTA
Found at i:50833938 original size:48 final size:48
Alignment explanation
Indices: 50833842--50834118 Score: 284
Period size: 48 Copynumber: 5.8 Consensus size: 48
50833832 TCTCATATCG
* * **** * * *
50833842 ATGCCATGTCCCAGACATGGTCTTAGACAAAATAACTTATTGATGCCA
1 ATGCCATATCCCAGACATGGTCTTACATGGGATCACATATAGATGCCA
* * * * *
50833890 ATGTCATATCCCAAATATGGTCTTACAAGGGATCACATATAGACGCCA
1 ATGCCATATCCCAGACATGGTCTTACATGGGATCACATATAGATGCCA
* * *
50833938 ATTCCATATCCCAGATATGGTCTTACATGGGATCACATATCGATGCCA
1 ATGCCATATCCCAGACATGGTCTTACATGGGATCACATATAGATGCCA
* * * * * * *
50833986 ATGCCATGTCTCAGACATGGTATTACACGAGATCACATGTCGATGCCA
1 ATGCCATATCCCAGACATGGTCTTACATGGGATCACATATAGATGCCA
* * * * *
50834034 ATGCCATGTCCTAAACATGGTCTCACATGGGATCACATATTGATGCCA
1 ATGCCATATCCCAGACATGGTCTTACATGGGATCACATATAGATGCCA
*
50834082 ATGCCATATCCCAGACATGTTCTTACATGGGATCACA
1 ATGCCATATCCCAGACATGGTCTTACATGGGATCACA
50834119 CATAACCCTA
Statistics
Matches: 188, Mismatches: 41, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
48 188 1.00
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.27
Consensus pattern (48 bp):
ATGCCATATCCCAGACATGGTCTTACATGGGATCACATATAGATGCCA
Found at i:50834032 original size:144 final size:144
Alignment explanation
Indices: 50833842--50834118 Score: 374
Period size: 144 Copynumber: 1.9 Consensus size: 144
50833832 TCTCATATCG
* * * * * *
50833842 ATGCCATGTCCCAGACATGGTCTTAGACAAAATAACTTATTGATGCCAATGTCATATCCCAAATA
1 ATGCCATGTCCCAGACATGGTATTACACAAAATAACATATCGATGCCAATGCCATATCCCAAACA
* * *
50833907 TGGTCTTACAAGGGATCACATATAGACGCCAATTCCATATCCCAGATATGGTCTTACATGGGATC
66 TGGTCTCACAAGGGATCACATATAGACGCCAATGCCATATCCCAGACATGGTCTTACATGGGATC
50833972 ACATATCGATGCCA
131 ACATATCGATGCCA
* * * * * * *
50833986 ATGCCATGTCTCAGACATGGTATTACACGAGATCACATGTCGATGCCAATGCCATGTCCTAAACA
1 ATGCCATGTCCCAGACATGGTATTACACAAAATAACATATCGATGCCAATGCCATATCCCAAACA
* * * *
50834051 TGGTCTCACATGGGATCACATATTGATGCCAATGCCATATCCCAGACATGTTCTTACATGGGATC
66 TGGTCTCACAAGGGATCACATATAGACGCCAATGCCATATCCCAGACATGGTCTTACATGGGATC
50834116 ACA
131 ACA
50834119 CATAACCCTA
Statistics
Matches: 113, Mismatches: 20, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
144 113 1.00
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.27
Consensus pattern (144 bp):
ATGCCATGTCCCAGACATGGTATTACACAAAATAACATATCGATGCCAATGCCATATCCCAAACA
TGGTCTCACAAGGGATCACATATAGACGCCAATGCCATATCCCAGACATGGTCTTACATGGGATC
ACATATCGATGCCA
Found at i:50838360 original size:27 final size:27
Alignment explanation
Indices: 50838328--50838506 Score: 207
Period size: 27 Copynumber: 6.6 Consensus size: 27
50838318 TTAAATTGTA
50838328 TAGCACTAAGTGTGCGATTTGACTATG
1 TAGCACTAAGTGTGCGATTTGACTATG
* ** *
50838355 TTGCACTAAGTGTGCGAAATGAATATG
1 TAGCACTAAGTGTGCGATTTGACTATG
* *
50838382 -ATGCACTAAGTGTGCGAATTGACCATG
1 TA-GCACTAAGTGTGCGATTTGACTATG
**
50838409 CGGCACTAAGTGTGCGAGTTTGACTATG
1 TAGCACTAAGTGTGCGA-TTTGACTATG
* *
50838437 TAGCACTAAGTGTGCGATTTGATTACG
1 TAGCACTAAGTGTGCGATTTGACTATG
* * *
50838464 TAGCACTAAGTGTGCGAGTTGATTATA
1 TAGCACTAAGTGTGCGATTTGACTATG
*
50838491 TAGCACTGAGTGTGCG
1 TAGCACTAAGTGTGCG
50838507 GACTCAATAT
Statistics
Matches: 130, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 107 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
TAGCACTAAGTGTGCGATTTGACTATG
Found at i:50838443 original size:82 final size:81
Alignment explanation
Indices: 50838330--50838485 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
50838320 AAATTGTATA
* *
50838330 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
50838394 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
50838411 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
50838476 TGCGAGTTGA
65 TGCGAATTGA
50838486 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:50838497 original size:82 final size:81
Alignment explanation
Indices: 50838326--50838506 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
50838316 GATTAAATTG
* *
50838326 TATAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TATAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
50838391 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
*** ** *
50838407 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TATAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
50838471 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
*
50838489 TATAGCACTGAGTGTGCG
1 TATAGCACTAAGTGTGCG
50838507 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 17 0.20
82 66 0.80
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TATAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:50843770 original size:40 final size:40
Alignment explanation
Indices: 50843726--50843809 Score: 168
Period size: 40 Copynumber: 2.1 Consensus size: 40
50843716 AATCTCATAC
50843726 ACATAGTAAGATGCCAATGTAATATCCCAGATATGGTCTT
1 ACATAGTAAGATGCCAATGTAATATCCCAGATATGGTCTT
50843766 ACATAGTAAGATGCCAATGTAATATCCCAGATATGGTCTT
1 ACATAGTAAGATGCCAATGTAATATCCCAGATATGGTCTT
50843806 ACAT
1 ACAT
50843810 GGGATCACAG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.30
Consensus pattern (40 bp):
ACATAGTAAGATGCCAATGTAATATCCCAGATATGGTCTT
Found at i:50843953 original size:48 final size:48
Alignment explanation
Indices: 50843775--50844098 Score: 303
Period size: 48 Copynumber: 7.0 Consensus size: 48
50843765 TACATAGTAA
** *
50843775 GATGCCAATGTAATATCCCAGATATGGTCTTACATGGGATCACAGATC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATC
* * * * *
50843823 GAAGCC---G--ATAGCCCAGCTATGGTCTTACATGATG-TCTCATATC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATG-GGATCACATATC
* * * * ** *
50843866 GATGCC-ATGCC-T-T---AAACATGGTGTTAGATGAAATAACATATC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATC
* * * *
50843908 AATGCCAATGCCATATCCCAGATATGATCTTATATGTGATCACATATC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATC
* *
50843956 GATGCCAATGTCATATCCCAGATATGGTCTTACGTGGGATCACATATC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATC
* * ** *
50844004 GATGCCAATGCCATGTCCCAGACATGGTCTTATGTGGGATCACATATT
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATC
* *
50844052 GATGCCAACGCCATATCCCAGAAATGGTCTTACATGGGATCACATAT
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATAT
50844099 AACCCTAATA
Statistics
Matches: 222, Mismatches: 42, Indels: 24
0.77 0.15 0.08
Matches are distributed among these distances:
42 24 0.11
43 39 0.18
44 2 0.01
45 3 0.01
46 1 0.00
48 153 0.69
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (48 bp):
GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATC
Found at i:50849814 original size:20 final size:20
Alignment explanation
Indices: 50849786--50849823 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
50849776 ATATAATTTA
*
50849786 TATTTTAAAAAAATATTATT
1 TATTATAAAAAAATATTATT
*
50849806 TATTATAAAAAATTATTA
1 TATTATAAAAAAATATTA
50849824 GCACTAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
TATTATAAAAAAATATTATT
Found at i:50852831 original size:2 final size:2
Alignment explanation
Indices: 50852824--50852851 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
50852814 ATTAGGTTAG
50852824 GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT
50852852 TTTATTTGGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
GT
Found at i:50858506 original size:41 final size:40
Alignment explanation
Indices: 50858379--50858523 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
50858369 CTCGCACAAG
* * * *
50858379 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
*
50858419 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
50858459 GCCTTC-GGATCTTAGTCCGGATGTAGTCACTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCACAAAT
50858500 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
50858524 CATTCGAGTA
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 3 0.03
40 58 0.64
41 27 0.30
42 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:50859754 original size:38 final size:38
Alignment explanation
Indices: 50859712--50859787 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
50859702 CAAGAACTCC
50859712 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
* *
50859750 TTCCTCCTTCCTTAGAATTTTTGGTCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
50859788 AAAGGATGAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.34
Consensus pattern (38 bp):
TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
Found at i:50866347 original size:39 final size:40
Alignment explanation
Indices: 50866302--50866412 Score: 98
Period size: 40 Copynumber: 2.8 Consensus size: 40
50866292 CGGGGTTTAG
* * *
50866302 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
50866341 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * *
50866381 CCGGATATAGTCGCTAGCACAAATGCCTTCGG
1 CCGGATATAACCACTAGCATAAAGGCCTTCGG
50866413 ATCTTAGTCC
Statistics
Matches: 60, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
39 15 0.25
40 45 0.75
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:50866372 original size:40 final size:40
Alignment explanation
Indices: 50866325--50866468 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
50866315 CTCGCACAAG
* * * * *
50866325 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
50866365 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* *
50866405 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAA-
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
*
50866445 GCCTTCGGGACTTAGCCTGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
50866469 CATTCGAGTA
Statistics
Matches: 91, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
39 3 0.03
40 76 0.84
41 12 0.13
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:50867695 original size:38 final size:38
Alignment explanation
Indices: 50867653--50867728 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
50867643 CAAGAACTCC
50867653 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
50867691 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
50867729 AAAGGATGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.32
Consensus pattern (38 bp):
TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
Found at i:50875658 original size:27 final size:27
Alignment explanation
Indices: 50875618--50875758 Score: 155
Period size: 27 Copynumber: 5.2 Consensus size: 27
50875608 AGGAAGCGTC
* *
50875618 CTGGTGCCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
50875645 CTGGTGGCTCTGCCAC-ATATATTTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
* *
50875671 CCTGGTGGCTATGCCACAATTATCAGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
* *
50875699 TTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
50875726 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
50875753 CTGGTG
1 CTGGTG
50875759 ACTTCGTCAC
Statistics
Matches: 95, Mismatches: 12, Indels: 14
0.79 0.10 0.12
Matches are distributed among these distances:
26 11 0.12
27 80 0.84
28 4 0.04
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:50875704 original size:54 final size:54
Alignment explanation
Indices: 50875615--50875758 Score: 209
Period size: 54 Copynumber: 2.7 Consensus size: 54
50875605 TGGAGGAAGC
* * *
50875615 GTCCTGGTGCCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATTT
1 GTCCTGGTGGCTATGCCACAATTATCAGATCTGGTGGCTCTGCCACATATATCT
*
50875669 GTCCTGGTGGCTATGCCACAATTATCAGATTTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCAGATCTGGTGGCTCTGCCACATATATCT
* * *
50875723 GTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCAG-ATCTGGTG
50875759 ACTTCGTCAC
Statistics
Matches: 81, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
53 5 0.06
54 76 0.94
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCAGATCTGGTGGCTCTGCCACATATATCT
Found at i:50875769 original size:27 final size:26
Alignment explanation
Indices: 50875618--50875776 Score: 133
Period size: 27 Copynumber: 5.9 Consensus size: 26
50875608 AGGAAGCGTC
* * *
50875618 CTGGTGCCTATGCCACAATTATCTGAT
1 CTGGTGACTCTGCCACAA-TATCTGTT
* * *
50875645 CTGGTGGCTCTGCCACATATATTTGTC
1 CTGGTGACTCTGCCACA-ATATCTGTT
* * *
50875672 CTGGTGGCTATGCCACAATTATCAGATT
1 CTGGTGACTCTGCCACAA-TATCTG-TT
*
50875700 -TGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGACTCTGCCACA-ATATCTGTT
*
50875726 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGACTCTGCCACAATATCTGT-T
*
50875753 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGACTCT-GCCACAATATCTG
50875777 GCAGCCTCGC
Statistics
Matches: 112, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
26 12 0.11
27 97 0.87
28 3 0.03
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (26 bp):
CTGGTGACTCTGCCACAATATCTGTT
Found at i:50879097 original size:11 final size:12
Alignment explanation
Indices: 50879076--50879104 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
50879066 TTAACGTTAG
50879076 TTTTCTCTAGGT
1 TTTTCTCTAGGT
50879088 TTTTCT-TAGGT
1 TTTTCTCTAGGT
50879099 TTTTCT
1 TTTTCT
50879105 GCAACTTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.07, C:0.14, G:0.14, T:0.66
Consensus pattern (12 bp):
TTTTCTCTAGGT
Found at i:50888981 original size:14 final size:14
Alignment explanation
Indices: 50888962--50888990 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
50888952 GGTATAAGGG
50888962 ACAATATGTATGTC
1 ACAATATGTATGTC
50888976 ACAATATGTATGTC
1 ACAATATGTATGTC
50888990 A
1 A
50888991 TTGATTGGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (14 bp):
ACAATATGTATGTC
Found at i:50891123 original size:3 final size:3
Alignment explanation
Indices: 50891115--50891170 Score: 50
Period size: 3 Copynumber: 20.3 Consensus size: 3
50891105 ATATTTAAGA
* * *
50891115 AAT AAT AAT TAT AAT -TT AA- AAT -AT AAT AAT AAT AAT AAT AAT GAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
50891160 -AT AAT -AT AAT A
1 AAT AAT AAT AAT A
50891171 GTTAGAATAA
Statistics
Matches: 43, Mismatches: 5, Indels: 10
0.74 0.09 0.17
Matches are distributed among these distances:
2 9 0.21
3 34 0.79
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (3 bp):
AAT
Found at i:50891131 original size:21 final size:21
Alignment explanation
Indices: 50891103--50891150 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
50891093 TGTATTTACT
50891103 TAAT-ATTTAAGAA-ATAATAA
1 TAATAATTTAA-AATATAATAA
*
50891123 TTATAATTTAAAATATAATAA
1 TAATAATTTAAAATATAATAA
50891144 TAATAAT
1 TAATAAT
50891151 AATAATGATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 5 0.21
21 19 0.79
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (21 bp):
TAATAATTTAAAATATAATAA
Found at i:50892255 original size:30 final size:30
Alignment explanation
Indices: 50892214--50892273 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
50892204 TTTATTGTTA
50892214 AATTTTCTTATTATTTTAAAGGCATTTGCT
1 AATTTTCTTATTATTTTAAAGGCATTTGCT
* *
50892244 AATTTTTTTATTATTTTAGAGGCATTTGCT
1 AATTTTCTTATTATTTTAAAGGCATTTGCT
50892274 TGTTAAATTG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.25, C:0.08, G:0.12, T:0.55
Consensus pattern (30 bp):
AATTTTCTTATTATTTTAAAGGCATTTGCT
Found at i:50892424 original size:12 final size:12
Alignment explanation
Indices: 50892394--50892426 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
50892384 TATATATTTT
50892394 AAAATT-ATATA
1 AAAATTAATATA
50892405 AAAA-TAATATA
1 AAAATTAATATA
50892416 AAAATTAATAT
1 AAAATTAATAT
50892427 GGGCGGGCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:50892828 original size:6 final size:6
Alignment explanation
Indices: 50892819--50892844 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
50892809 CCTGACTATG
50892819 ACTGTT ACTGTT ACTGTT ACTGTT AC
1 ACTGTT ACTGTT ACTGTT ACTGTT AC
50892845 CCTACGGTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.46
Consensus pattern (6 bp):
ACTGTT
Found at i:50895453 original size:48 final size:47
Alignment explanation
Indices: 50895349--50895524 Score: 210
Period size: 48 Copynumber: 3.7 Consensus size: 47
50895339 ACGATGCCTC
* *
50895349 ATGCCAATGCCATGTCCTAGACAT-GTCTTACACTGGCTCACATAACT
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAA-T
** * * *
50895396 ATGTTGATGCCATGTCCCAGACATGGTTTTATACTGGCTTACATAAT
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAAT
* *
50895443 GATGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCACATAACA
1 -ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAA-T
* * *
50895492 ATGCTGATTCCATGTCCCAAACATGGTCTTACA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACA
50895525 TAGTTACATG
Statistics
Matches: 108, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
47 21 0.19
48 87 0.81
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.30
Consensus pattern (47 bp):
ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAAT
Found at i:50898322 original size:30 final size:30
Alignment explanation
Indices: 50898267--50898328 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
50898257 TAGTAAAGGT
* *
50898267 AAAATTATATTTTAATCTTTTAAAATTATA
1 AAAATTATAATTTAATCTTTTAAAATAATA
50898297 AAAATT-TAATTTAATCTTTTAAAAATAATA
1 AAAATTATAATTTAATCTTTT-AAAATAATA
50898327 AA
1 AA
50898329 GATATAGACT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 13 0.45
30 16 0.55
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (30 bp):
AAAATTATAATTTAATCTTTTAAAATAATA
Found at i:50904968 original size:27 final size:27
Alignment explanation
Indices: 50904920--50905076 Score: 162
Period size: 27 Copynumber: 5.8 Consensus size: 27
50904910 GCGAGGCTAC
* *
50904920 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
50904947 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
50904973 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
50905000 CAGATAATCGTGGCATAGCCACCAGA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
* * *
50905027 TAGATATATGTGACAGAGCCACTAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
50905054 CAGATAATTGTGGCATAGCCACC
1 CAGAT-ATTGTGGCAGAGCCACC
50905077 TGGACGCTTC
Statistics
Matches: 109, Mismatches: 13, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
26 10 0.09
27 94 0.86
28 5 0.05
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:50905013 original size:54 final size:54
Alignment explanation
Indices: 50904920--50905076 Score: 221
Period size: 54 Copynumber: 2.9 Consensus size: 54
50904910 GCGAGGCTAC
* *
50904920 CAGATAT-TGTGAC-GAAGTCACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAA
1 CAGATATATGTGACAG-AGCCACCAGAT-CAGATAATTGTGGCATAGCCACCAGAA
* *
50904973 CAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGCCACCAGAA
1 CAGATATATGTGACAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGAA
* *
50905027 TAGATATATGTGACAGAGCCACTAGATCAGATAATTGTGGCATAGCCACC
1 CAGATATATGTGACAGAGCCACCAGATCAGATAATTGTGGCATAGCCACC
50905077 TGGACGCTTC
Statistics
Matches: 93, Mismatches: 8, Indels: 5
0.88 0.08 0.05
Matches are distributed among these distances:
53 12 0.13
54 80 0.86
55 1 0.01
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.20
Consensus pattern (54 bp):
CAGATATATGTGACAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGAA
Found at i:50906730 original size:26 final size:26
Alignment explanation
Indices: 50906699--50906806 Score: 173
Period size: 26 Copynumber: 4.2 Consensus size: 26
50906689 TGAAATGTCC
50906699 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
50906725 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
50906751 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
50906777 ATCATGGAACATTTACCT-AACACATT
1 ATCATGGAACATTTACCTAAAC-CATT
50906803 ATCA
1 ATCA
50906807 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
25 2 0.03
26 74 0.97
ACGTcount: A:0.37, C:0.23, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:50908015 original size:14 final size:15
Alignment explanation
Indices: 50907991--50908020 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
50907981 CGAAAAGAAA
50907991 AATTATTTTTAAAAT
1 AATTATTTTTAAAAT
50908006 AATT-TTTTTAAAAT
1 AATTATTTTTAAAAT
50908020 A
1 A
50908021 GTGTATAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
AATTATTTTTAAAAT
Found at i:50909885 original size:23 final size:22
Alignment explanation
Indices: 50909859--50909903 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
50909849 TTCTTCCTTC
50909859 TAATTTAAAGTTTTATTTG-ATTT
1 TAATTTAAA-TTTT-TTTGTATTT
*
50909882 TAATTTTAATTTTTTTGTATTT
1 TAATTTAAATTTTTTTGTATTT
50909904 GATAAATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 4 0.20
22 8 0.40
23 8 0.40
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (22 bp):
TAATTTAAATTTTTTTGTATTT
Found at i:50910350 original size:694 final size:695
Alignment explanation
Indices: 50907130--50910599 Score: 4870
Period size: 694 Copynumber: 5.0 Consensus size: 695
50907120 GGGCGTTACA
* *
50907130 TTGATAAATTAAATAAAAACTATTCTATTCTTGTTTATATGTGTTTATTTATATTTAATTTATTT
1 TTGATAAATTAAATATAAACTATTCTATTCTTATTTATATGTGTTTATTTATATTTAATTTATTT
* * * * * * *
50907195 TGTTCGCTAACGTATTTTGTCTAACAATCTTAAGATAGATCTTTATAATTTTTGAAATTCTCTAA
66 TGTTCGCTAACATGTTTTGTCTAACAATCTTAAGACAGATCCTTGTTATTTTTGCAATTCTCTAA
* * *
50907260 TCCGAGAAGAACGAAACACCAAGGGGAAAAGAACAAAAAATTCATTTTT-AAAT--TTTTTTTTA
131 TCCGAGACGAACGAAACACCAAGGCGAAAAGAA-AAAAAA-TCATTTTTAAAATAATTTTTTTAA
* * * * *
50907322 AAAATTGGATAAAATCTATTTCGGGATTTATTCCCACTATTCAACGGATTTTATTCTAATTTTAA
194 AAAAGTGGATAAAATCTATTTCGGGATTTATTCCCACTGTTCAACAGATTTTATTCCAATTTTGA
* * * * *
50907387 TTTTATTTTAGCCCAACACTAAATTATTTTTGGCTCATTAATGACAGATTTTGTGGTTATTTCAA
259 TTTTATTTTAGCCCAACACGAATTTATTTTTGGCTCCTTAATGGCAGATTTTGTGGTTATTTCCA
* * * * *
50907452 AATTTTCC-CCTATCCTACATGCTTATAAAAGGTTGTGTCTTCTGTAGGATTAAACCAACACACT
324 GATTTTCCACC-ATCCTACATGCCTATAAAAGGCTGTGTTTTCTGTAGGATTAAACCAACACTCT
* * *
50907516 GATATTCTTCTTATACCGAAATTTTGTTGCTCTCAAAATTCTTCATTTTCCTCTTCGTATTTTTC
388 GATATTCTTCTTATACCGAAATTCTGTAGCTCTCAAAATTCTTCCTTTTCCTCTTCGTATTTTTC
* *** * * *
50907581 AAACTTTTCGATGATAGAAAAATATAAAGTTTGTTAGTTGATCGTTGTAGAGGTGTTACAACTTT
453 AAACTTTTCGGTGATAGAAAAAGGCAAAGTTTGTTCGTTGATCGTTGTAGAGGTGCTACTACTTT
* * * * *
50907646 GACCACTATTGTTGTTGTATCTTGGGAGTCATTCGACCAATATTTCTCTAAGTACAGTAGGAGCG
518 GACCACTATTGTTGTTGTATCCTGGGAGACATTCGACCAATGTTTCTCCAAGTACCGTAGGAGCG
* * * *
50907711 GTCAAATCAATCTTAAGGAAACTGTATTTCACAGGTCTCAACGTTTCGTAAAATCTCTATTCTTC
583 GTCGAATCTATCTTAAGGAAACTGTGTTTCACAGGCCTCAACGTTTCGTAAAATCTCTATTCTTC
* * *
50907776 CTTTTAATTTAAACTTTTATTTTATTTTAAGTTTGATTTTTTTTTCGTAT
648 CTTCTAATTTAAACTTTTATTTGATTTTAA-TTTTA-TTTTTTTTCGTAT
* *
50907826 TTGATAAATTAAATATAAACAATTCTATTCTTATTTTATATGTGTTTATTTATATTTATTTTATT
1 TTGATAAATTAAATATAAACTATTCTATTCTTA-TTTATATGTGTTTATTTATATTTAATTTATT
* * * * *
50907891 TTATTCGATAACGTGTTTTGTCTAACAATCTTAAGACAAATCCTTATTATTTTTGCAATTCTCTA
65 TTGTTCGCTAACATGTTTTGTCTAACAATCTTAAGACAGATCCTTGTTATTTTTGCAATTCTCTA
* * *
50907956 ATCCGAGACGAACAAAACACCCAGGCGAAAAG---AAAAATTATTTTTAAAATAATTTTTTTAAA
130 ATCCGAGACGAACGAAACACCAAGGCGAAAAGAAAAAAAATCATTTTTAAAATAATTTTTTTAAA
* * * * * * ** *
50908018 ATAGTGTATAAAATCTATTTC-GAATTTTATTTCCGCCGTTCAATGGATTTTATTCCACTTTTGA
195 AAAGTGGATAAAATCTATTTCGGGA-TTTATTCCCACTGTTCAACAGATTTTATTCCAATTTTGA
* * * *
50908082 TTTTATTTTAACCCAACACGAATTTATTTTTAGCTCCTTAATAGCAGATTTTGTGGTTTTTTCCA
259 TTTTATTTTAGCCCAACACGAATTTATTTTTGGCTCCTTAATGGCAGATTTTGTGGTTATTTCCA
* * *
50908147 AATTTTCCACCATCTTACATGCCTATAAAAGGCTGTGTTTTCTGTAGGATTAAACCAACACTCTA
324 GATTTTCCACCATCCTACATGCCTATAAAAGGCTGTGTTTTCTGTAGGATTAAACCAACACTCTG
* * * * *
50908212 ATATTTTTCTTATACCGAAATTCTATTGCTCTCAAAATTCTTCCTTTTCCTTTTCATATTTTTCA
389 ATATTCTTCTTATACCGAAATTCTGTAGCTCTCAAAATTCTTCCTTTTCCTCTTCGTATTTTTCA
* * *
50908277 AACTTTTCGGTGATAAAAAAAGGCAAAGGATT-TTCGTTGATCGTTGTAAAGGTGCTACTACTTT
454 AACTTTTCGGTGATAGAAAAAGGCAAA-GTTTGTTCGTTGATCGTTGTAGAGGTGCTACTACTTT
* * * ***
50908341 GATCATTATTGTTGTTGTATCCTGAGAGACATTCGACCAATGTTTCTCCAAGTGTAGTA-GAGCG
518 GACCACTATTGTTGTTGTATCCTGGGAGACATTCGACCAATGTTTCTCCAAGTACCGTAGGAGCG
* * * *
50908405 GTTGAATCTGTCTT-AGGAAAACTGTGTTTCACAAGCCTCAACGTTTTGTAAAATCTCTATTCTT
583 GTCGAATCTATCTTAAGG-AAACTGTGTTTCACAGGCCTCAACGTTTCGTAAAATCTCTATTCTT
50908469 CCTTCTAATTTAAACTTTTATTTGATTTTAATTTTGATTTTTTTT-GTAT
647 CCTTCTAATTTAAACTTTTATTTGATTTTAATTTT-ATTTTTTTTCGTAT
50908518 TTGATAAATTAAATATAAACTATTCTATTCTTATTTTATATGTGTTTATTTATATTTAATTTATT
1 TTGATAAATTAAATATAAACTATTCTATTCTTA-TTTATATGTGTTTATTTATATTTAATTTATT
* *
50908583 TTGTCCGCTAACATGTTTTGTCTAACAATCTTAAGATAGATCCTTGTTATTTTTGCAATTCTCTA
65 TTGTTCGCTAACATGTTTTGTCTAACAATCTTAAGACAGATCCTTGTTATTTTTGCAATTCTCTA
* *
50908648 ATCCGAGATGAACAAAACACCAAGG-GAAAA-AGAAAAAAATCATTTTTAAAATAATTTTTTT-A
130 ATCCGAGACGAACGAAACACCAAGGCGAAAAGA-AAAAAAATCATTTTTAAAATAATTTTTTTAA
* * * *
50908710 AAAAGTGGATAAAATCTATTTCGAGATTTATTCTC-GTAGTTCTACAGATTTTATTCCAATTTTG
194 AAAAGTGGATAAAATCTATTTCGGGATTTATTCCCACT-GTTCAACAGATTTTATTCCAATTTTG
* *
50908774 ATTTTATTTTAGCCCAACATGAATATATTTTTGGCTCCTTAATGGCAGATTTTGTGGTTATTTCC
258 ATTTTATTTTAGCCCAACACGAATTTATTTTTGGCTCCTTAATGGCAGATTTTGTGGTTATTTCC
* *
50908839 AGATTTTCCACCATCCTACATGCCTATAAAAGGTTGTGTTTTCTGTAGGATTAAACCAACACACT
323 AGATTTTCCACCATCCTACATGCCTATAAAAGGCTGTGTTTTCTGTAGGATTAAACCAACACTCT
* *
50908904 GATATTCTTCTTATACCGAAATTCTGTTA-CTCTCAAAATTCTTCATTTTCCTCTTTGTATTTTT
388 GATATTCTTCTTATACCGAAATTCTG-TAGCTCTCAAAATTCTTCCTTTTCCTCTTCGTATTTTT
*** * * * *
50908968 CAAA--TTTCGGTGATAGAAAAATATAAAGTTCGTTCGTTGATCATTGTAGAGGTGTTACAACTT
452 CAAACTTTTCGGTGATAGAAAAAGGCAAAGTTTGTTCGTTGATCGTTGTAGAGGTGCTACTACTT
* ** *
50909031 TGACCACTATTGTTGTTGTATCTTGGGAGACATTCGACCAGCGTTTCTCCAAGTACCGTAGGAGT
517 TGACCACTATTGTTGTTGTATCCTGGGAGACATTCGACCAATGTTTCTCCAAGTACCGTAGGAGC
* * *
50909096 GGTCGAATCTGTCTTAAGGAAACTGTATTTCACAGGTCTCAACGTTTCGTAAAATCTCTATTCTT
582 GGTCGAATCTATCTTAAGGAAACTGTGTTTCACAGGCCTCAACGTTTCGTAAAATCTCTATTCTT
* *
50909161 CCTTCTAATTTAAACTTTTATTTTATTTTAAGTTTGATTTTTTTTTCGTAT
647 CCTTCTAATTTAAACTTTTATTTGATTTTAA-TTTTA-TTTTTTTTCGTAT
* *
50909212 TTGATAAATTAAATATAAACTAATCTATTTTTATTTATATGTGTTTATTTATATTTAATTTATTT
1 TTGATAAATTAAATATAAACTATTCTATTCTTATTTATATGTGTTTATTTATATTTAATTTATTT
50909277 TGTTCGCTAACATGTTTTGTCTAACAATCTTAAGACAGATCCTTGTTATTTTTGCAATTCTCTAA
66 TGTTCGCTAACATGTTTTGTCTAACAATCTTAAGACAGATCCTTGTTATTTTTGCAATTCTCTAA
* *
50909342 TCCAAGACGAACGAAACACCAAGGCGAAAAGAAAAAAAATCATTTTT--AAT--TTTTTTTTAAA
131 TCCGAGACGAACGAAACACCAAGGCGAAAAGAAAAAAAATCATTTTTAAAATAATTTTTTTAAAA
* * ** * *
50909403 ATGTGGATAAAATCTATTTCGAGATTTATTCCCACCATTCAA-AGGACTTTATTCCAATTTTAAT
196 AAGTGGATAAAATCTATTTCGGGATTTATTCCCACTGTTCAACA-GATTTTATTCCAATTTTGAT
* * * * *
50909467 TTTATTTCAGCCCAACCCAAATATATTTTTGGCTCCTTAATGGCAGATTTTGTGGTTATATCCAG
260 TTTATTTTAGCCCAACACGAATTTATTTTTGGCTCCTTAATGGCAGATTTTGTGGTTATTTCCAG
* *
50909532 ATTTTCCACCATCCTACATACCTATAAAAGGCAGTGTTTTCTGTAGGATTAAACCAACACTCTGA
325 ATTTTCCACCATCCTACATGCCTATAAAAGGCTGTGTTTTCTGTAGGATTAAACCAACACTCTGA
* * *
50909597 TATTCTTCTTATACTGAAATTCTGTAGCTCTTAGAATTCTTCCTTTTCCTCTTCGTATTTTTCAA
390 TATTCTTCTTATACCGAAATTCTGTAGCTCTCAAAATTCTTCCTTTTCCTCTTCGTATTTTTCAA
* * *
50909662 ACTTTTCGGTAATAGAAAAAGGCAAAGTTTGTTTGTTGATCATTGTAGAGGTGCTACTACTTTGA
455 ACTTTTCGGTGATAGAAAAAGGCAAAGTTTGTTCGTTGATCGTTGTAGAGGTGCTACTACTTTGA
* * * * * **
50909727 TCACTGTTGTTGTTGTATCCTGAGAGACATTTGACCAACGTTTCTCCAAGTACCGTAAAAGCGGT
520 CCACTATTGTTGTTGTATCCTGGGAGACATTCGACCAATGTTTCTCCAAGTACCGTAGGAGCGGT
* * * * *
50909792 CGAATATTTCTTAAGGAAACTGTGTTTCACAGGGCTCAACATTTCGTAAAATCCCTATTCTTCCT
585 CGAATCTATCTTAAGGAAACTGTGTTTCACAGGCCTCAACGTTTCGTAAAATCTCTATTCTTCCT
* *
50909857 TCTAATTTAAAGTTTTATTTGATTTTAATTTTAATTTTTTT-GTAT
650 TCTAATTTAAACTTTTATTTGATTTTAATTTTATTTTTTTTCGTAT
*
50909902 TTGATAAATTAAATCTAAACTATTCTATTCTTATTTATATGTGTTTATTTATATTTAATTTATTT
1 TTGATAAATTAAATATAAACTATTCTATTCTTATTTATATGTGTTTATTTATATTTAATTTATTT
*
50909967 TGTCCGCTAACATGTTTTGTCTAACAATCTTAAGACAGATCCTTGTTATTTTTGCAATTCTCTAA
66 TGTTCGCTAACATGTTTTGTCTAACAATCTTAAGACAGATCCTTGTTATTTTTGCAATTCTCTAA
* * *
50910032 TTCGAGACGAACGAAACACTAAGGCAAAAAGAAAAAAAATCATTTTTAAAATAATTTTTTTAAAA
131 TCCGAGACGAACGAAACACCAAGGCGAAAAGAAAAAAAATCATTTTTAAAATAATTTTTTTAAAA
* * * *
50910097 AAATGAATAAAATCTATTTCGGGATTTATTCCTACTGTTCAATAGATTTTATTCCAATTTTGATT
196 AAGTGGATAAAATCTATTTCGGGATTTATTCCCACTGTTCAACAGATTTTATTCCAATTTTGATT
* ** * * *
50910162 TTATTTTAGCCCAACACGTATTTATTTTTGGCTCAGTAATGGTAGATTTTTTAGTTATTTCCAGA
261 TTATTTTAGCCCAACACGAATTTATTTTTGGCTCCTTAATGGCAGATTTTGTGGTTATTTCCAGA
*
50910227 TTTTCCACCATTCTACATGCCTATAAAAGGCTGTGTTTTCTGTAGGATTAAACCAACACTCTGAT
326 TTTTCCACCATCCTACATGCCTATAAAAGGCTGTGTTTTCTGTAGGATTAAACCAACACTCTGAT
* * * *
50910292 ATT-TATCTTATTCCAAAACTCTGTAGCTTTCAAAATTCTTCCTTTTCCTCTTCGTATTTTTCAA
391 ATTCT-TCTTATACCGAAATTCTGTAGCTCTCAAAATTCTTCCTTTTCCTCTTCGTATTTTTCAA
*
50910356 ACTTTTCGATGATAGAAAAAGGCAAAGTTTGTTCGTTGATCGTTGTAGAGGTGCTACTACTTTGA
455 ACTTTTCGGTGATAGAAAAAGGCAAAGTTTGTTCGTTGATCGTTGTAGAGGTGCTACTACTTTGA
* *
50910421 CTACTGTTGTTGTTGTATCCTGGGAGACATTCGACCAATGTTTCTCCAAGTACCGT-GGATGCGG
520 CCACTATTGTTGTTGTATCCTGGGAGACATTCGACCAATGTTTCTCCAAGTACCGTAGGA-GCGG
* * * *
50910485 TTGAATCTATCTTAAAGAAACTGTGTTTCATAGGCCTCAACATTTCGTAAAATCTCTATTCTTCC
584 TCGAATCTATCTTAAGGAAACTGTGTTTCACAGGCCTCAACGTTTCGTAAAATCTCTATTCTTCC
* *
50910550 TTCTAATTTAAACTTTTATTTAATTTTAATTTTAATTTTTTTTCATAT
649 TTCTAATTTAAACTTTTATTTGATTTTAATTTT-ATTTTTTTTCGTAT
50910598 TT
1 TT
50910600 TCACAGGCTC
Statistics
Matches: 2468, Mismatches: 267, Indels: 78
0.88 0.09 0.03
Matches are distributed among these distances:
690 185 0.07
691 344 0.14
692 255 0.10
693 578 0.23
694 612 0.25
695 339 0.14
696 40 0.02
697 115 0.05
ACGTcount: A:0.30, C:0.16, G:0.13, T:0.42
Consensus pattern (695 bp):
TTGATAAATTAAATATAAACTATTCTATTCTTATTTATATGTGTTTATTTATATTTAATTTATTT
TGTTCGCTAACATGTTTTGTCTAACAATCTTAAGACAGATCCTTGTTATTTTTGCAATTCTCTAA
TCCGAGACGAACGAAACACCAAGGCGAAAAGAAAAAAAATCATTTTTAAAATAATTTTTTTAAAA
AAGTGGATAAAATCTATTTCGGGATTTATTCCCACTGTTCAACAGATTTTATTCCAATTTTGATT
TTATTTTAGCCCAACACGAATTTATTTTTGGCTCCTTAATGGCAGATTTTGTGGTTATTTCCAGA
TTTTCCACCATCCTACATGCCTATAAAAGGCTGTGTTTTCTGTAGGATTAAACCAACACTCTGAT
ATTCTTCTTATACCGAAATTCTGTAGCTCTCAAAATTCTTCCTTTTCCTCTTCGTATTTTTCAAA
CTTTTCGGTGATAGAAAAAGGCAAAGTTTGTTCGTTGATCGTTGTAGAGGTGCTACTACTTTGAC
CACTATTGTTGTTGTATCCTGGGAGACATTCGACCAATGTTTCTCCAAGTACCGTAGGAGCGGTC
GAATCTATCTTAAGGAAACTGTGTTTCACAGGCCTCAACGTTTCGTAAAATCTCTATTCTTCCTT
CTAATTTAAACTTTTATTTGATTTTAATTTTATTTTTTTTCGTAT
Found at i:50914016 original size:15 final size:16
Alignment explanation
Indices: 50913996--50914032 Score: 51
Period size: 14 Copynumber: 2.4 Consensus size: 16
50913986 TATTATATTC
50913996 TTATTTTATATGT-AT
1 TTATTTTATATGTAAT
*
50914011 TTA-TTTATATTTAAT
1 TTATTTTATATGTAAT
50914026 TTATTTT
1 TTATTTT
50914033 GTTCACTAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
14 8 0.42
15 8 0.42
16 3 0.16
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (16 bp):
TTATTTTATATGTAAT
Found at i:50914995 original size:8 final size:8
Alignment explanation
Indices: 50914956--50914996 Score: 50
Period size: 7 Copynumber: 5.2 Consensus size: 8
50914946 CTTTATATAT
50914956 ATTTAAAA
1 ATTTAAAA
50914964 ATATTAAAA
1 AT-TTAAAA
*
50914973 A-TTAATA
1 ATTTAAAA
50914980 ATTT-AAA
1 ATTTAAAA
50914987 ATTTAAAA
1 ATTTAAAA
50914995 AT
1 AT
50914997 ATTTAAAAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
7 12 0.43
8 9 0.32
9 7 0.25
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (8 bp):
ATTTAAAA
Found at i:50916549 original size:18 final size:19
Alignment explanation
Indices: 50916526--50916572 Score: 55
Period size: 17 Copynumber: 2.5 Consensus size: 19
50916516 AATATTAAAT
50916526 AAAATTTAAAAAGTT-C-AA
1 AAAATTTAAAAA-TTACAAA
50916544 AAAA-TTAAAAATTAACAAA
1 AAAATTTAAAAATT-ACAAA
50916563 AAAATTTAAA
1 AAAATTTAAA
50916573 TGTTAAGTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
16 2 0.08
17 7 0.28
18 5 0.20
19 6 0.24
20 5 0.20
ACGTcount: A:0.68, C:0.04, G:0.02, T:0.26
Consensus pattern (19 bp):
AAAATTTAAAAATTACAAA
Found at i:50917194 original size:27 final size:28
Alignment explanation
Indices: 50917146--50917201 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
50917136 TGGACTTAAC
*
50917146 TTTTAAATTTTTAATTAATTTTATATATT
1 TTTTAAACTTTT-ATTAATTTTATATATT
* *
50917175 TTTTAAACTTTT-TTATTTTTATTTATT
1 TTTTAAACTTTTATTAATTTTATATATT
50917202 ATATTTATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 13 0.54
29 11 0.46
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.70
Consensus pattern (28 bp):
TTTTAAACTTTTATTAATTTTATATATT
Found at i:50917255 original size:18 final size:17
Alignment explanation
Indices: 50917228--50917271 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
50917218 ATAACATTTC
*
50917228 AAAAAAATTAAAATTTTT
1 AAAAATATT-AAATTTTT
**
50917246 AAAAATATTAGTTTTTT
1 AAAAATATTAAATTTTT
50917263 AAAAATATT
1 AAAAATATT
50917272 TTTTAAAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
17 15 0.65
18 8 0.35
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (17 bp):
AAAAATATTAAATTTTT
Found at i:50920416 original size:22 final size:22
Alignment explanation
Indices: 50920391--50920432 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
50920381 AGTACCGTGT
* *
50920391 TGCTGAACAGAGAGCATTGTAG
1 TGCTAAACAGAGAACATTGTAG
50920413 TGCTAAACAGAGAACATTGT
1 TGCTAAACAGAGAACATTGT
50920433 CGTGATAAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.36, C:0.14, G:0.26, T:0.24
Consensus pattern (22 bp):
TGCTAAACAGAGAACATTGTAG
Found at i:50920484 original size:22 final size:22
Alignment explanation
Indices: 50920453--50920515 Score: 81
Period size: 22 Copynumber: 2.9 Consensus size: 22
50920443 AGATAGAACC
*
50920453 AAGTGTTGATTAGAGAGCACCA
1 AAGTGATGATTAGAGAGCACCA
*
50920475 AAGTGATGATTAGAGAGCATCA
1 AAGTGATGATTAGAGAGCACCA
* * *
50920497 AAGTGCTAAATAGAGAGCA
1 AAGTGATGATTAGAGAGCA
50920516 TCGAAGTGCT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.41, C:0.11, G:0.27, T:0.21
Consensus pattern (22 bp):
AAGTGATGATTAGAGAGCACCA
Found at i:50920516 original size:22 final size:22
Alignment explanation
Indices: 50920463--50920550 Score: 97
Period size: 22 Copynumber: 4.0 Consensus size: 22
50920453 AAGTGTTGAT
* * * *
50920463 TAGAGAGCACCAAAGTGATGAT
1 TAGAGAGCATCAAAGTGCTAAA
50920485 TAGAGAGCATCAAAGTGCTAAA
1 TAGAGAGCATCAAAGTGCTAAA
*
50920507 TAGAGAGCATCGAAGTGCTAAA
1 TAGAGAGCATCAAAGTGCTAAA
* *
50920529 CAAAGAGCA-CAGAAGTGCTAAA
1 TAGAGAGCATCA-AAGTGCTAAA
50920551 CCCGTACAAG
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
21 1 0.02
22 56 0.98
ACGTcount: A:0.44, C:0.15, G:0.25, T:0.16
Consensus pattern (22 bp):
TAGAGAGCATCAAAGTGCTAAA
Found at i:50928699 original size:21 final size:21
Alignment explanation
Indices: 50928669--50928714 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
50928659 CTCTAACTAT
50928669 TTTTAATATATTATTTTAAAA
1 TTTTAATATATTATTTTAAAA
*
50928690 TTTTATTATATTATTTTAAAA
1 TTTTAATATATTATTTTAAAA
50928711 TTTT
1 TTTT
50928715 TTAATTTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (21 bp):
TTTTAATATATTATTTTAAAA
Found at i:50929200 original size:26 final size:26
Alignment explanation
Indices: 50929162--50929215 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
50929152 TTGAAAATTT
* *
50929162 TTCGAATCGAGTCAAATGAAATAAAA
1 TTCGAATCAAGTCAAATCAAATAAAA
* *
50929188 TTCGAGTCAAGTCAAATCAAGTAAAA
1 TTCGAATCAAGTCAAATCAAATAAAA
50929214 TT
1 TT
50929216 ATTCGAGTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.46, C:0.13, G:0.15, T:0.26
Consensus pattern (26 bp):
TTCGAATCAAGTCAAATCAAATAAAA
Found at i:50929318 original size:15 final size:15
Alignment explanation
Indices: 50929300--50929334 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
50929290 AAAATTTTTG
50929300 AAAGCAAAAA-AAAAA
1 AAAG-AAAAAGAAAAA
50929315 AAAGAAAAAGAAAAA
1 AAAGAAAAAGAAAAA
50929330 AAAGA
1 AAAGA
50929335 TGCTTTAGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.86, C:0.03, G:0.11, T:0.00
Consensus pattern (15 bp):
AAAGAAAAAGAAAAA
Found at i:50929515 original size:19 final size:19
Alignment explanation
Indices: 50929493--50929531 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
50929483 TTTTTATAAC
50929493 TATTTTGAATTTTG-AATTT
1 TATTTT-AATTTTGTAATTT
*
50929512 TATTTTATTTTTGTAATTT
1 TATTTTAATTTTGTAATTT
50929531 T
1 T
50929532 TGTTAAGAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.69
Consensus pattern (19 bp):
TATTTTAATTTTGTAATTT
Found at i:50929695 original size:18 final size:19
Alignment explanation
Indices: 50929672--50929710 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
50929662 TTGCTTATCC
*
50929672 TAAAT-ATATTTAATAATT
1 TAAATAATATTTAAAAATT
*
50929690 TAAATAATTTTTAAAAATT
1 TAAATAATATTTAAAAATT
50929709 TA
1 TA
50929711 TACCAAAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
TAAATAATATTTAAAAATT
Found at i:50936018 original size:25 final size:25
Alignment explanation
Indices: 50935990--50936039 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
50935980 TATCTCATGT
50935990 ATATACTTCAAACACTATATATATA
1 ATATACTTCAAACACTATATATATA
* * *
50936015 ATATATTTCTAATACTATATATATA
1 ATATACTTCAAACACTATATATATA
50936040 TTTTACATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.46, C:0.12, G:0.00, T:0.42
Consensus pattern (25 bp):
ATATACTTCAAACACTATATATATA
Found at i:50937733 original size:12 final size:12
Alignment explanation
Indices: 50937716--50937746 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
50937706 ATTCATTTGA
50937716 CATTCATGCAGT
1 CATTCATGCAGT
*
50937728 CATTCATGCATT
1 CATTCATGCAGT
50937740 CATTCAT
1 CATTCAT
50937747 ACATTGCATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.26, C:0.26, G:0.10, T:0.39
Consensus pattern (12 bp):
CATTCATGCAGT
Found at i:50946162 original size:69 final size:71
Alignment explanation
Indices: 50945987--50946162 Score: 212
Period size: 71 Copynumber: 2.5 Consensus size: 71
50945977 CTTTTCAAGG
* * * *
50945987 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGATGAGGTATTTTTAATTTTT
1 AAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGACGAGGTATTTTTAATTTAT
50946052 GTTATC
66 GTTATC
* * ** * * *
50946058 AAAATCGACTCATACTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTAT
1 AAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGACGAGGTATTTTTAATTTAT
50946123 GTT-T-
66 GTTATC
* * *
50946127 TAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCT
50946163 TTTAATTTGT
Statistics
Matches: 89, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
69 31 0.35
70 1 0.01
71 57 0.64
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (71 bp):
AAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGACGAGGTATTTTTAATTTAT
GTTATC
Found at i:50946401 original size:191 final size:187
Alignment explanation
Indices: 50945987--50946505 Score: 549
Period size: 191 Copynumber: 2.7 Consensus size: 187
50945977 CTTTTCAAGG
* * ** * * *
50945987 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGATGAGGTATTTTTAATTTTT
1 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAA--TTT
* * * * * * * * *
50946052 GTTATCAAAATCGACTCATACTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTA
64 -TTA-C--TATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGACGAGGTAATTTCA
* ** * *
50946117 GTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTGTGTTTTTC
125 ATTTATGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTCTCTTTTTC
*
50946180 -AAATCAGCCCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAA-TTTT
1 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTT
* * *
50946243 ACTATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAGGATGAGGTAATTTCAATTTCT
66 ACTATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGACGAGGTAATTTCAATTTAT
*
50946308 GTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAA-CCTTTTAATTTCTACTTTTTC
131 GTTT-T--A-AATCAACTCATATTGCGAGAGGTGAGTT-AAGCCTTTTAATTTCT-CTTTTTC
*
50946370 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTAAGGTATTTTCAATTTTT
1 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAA-----
* * * *
50946435 GTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTT
61 -T-TTTTACTATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGACGAGGTAATT
50946500 TCAATT
122 TCAATT
50946506 AAGCCTTTCA
Statistics
Matches: 275, Mismatches: 34, Indels: 26
0.82 0.10 0.08
Matches are distributed among these distances:
185 54 0.20
186 1 0.00
187 1 0.00
188 4 0.01
189 39 0.14
190 8 0.03
191 57 0.21
192 51 0.19
199 42 0.15
201 18 0.07
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (187 bp):
AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTT
ACTATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGACGAGGTAATTTCAATTTAT
GTTTTAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTCTCTTTTTC
Found at i:50946406 original size:127 final size:126
Alignment explanation
Indices: 50946246--50946473 Score: 323
Period size: 127 Copynumber: 1.8 Consensus size: 126
50946236 CAATTTTACT
* *
50946246 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAGGATGAGGTAATTTCAATTTCTGT-
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATAAGGTAATTTCAATTTCTGTG
*
50946310 TTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAA
66 TT-TCAA-AATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTACTTTTTCAAA
* * * * * *
50946373 ATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTAAGGTATTTTCAATTTTTGTG
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATAAGGTAATTTCAATTTCTGTG
* **
50946438 TTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGA
66 TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGA
50946474 GCCTCAGGTC
Statistics
Matches: 88, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
126 27 0.31
127 59 0.67
128 2 0.02
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.34
Consensus pattern (126 bp):
ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATAAGGTAATTTCAATTTCTGTG
TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTACTTTTTCAAA
Found at i:50949151 original size:25 final size:25
Alignment explanation
Indices: 50949123--50949172 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
50949113 TATCTCATGT
50949123 ATATACTTCAAACACTATATATATA
1 ATATACTTCAAACACTATATATATA
* * *
50949148 ATATATTTCTAATACTATATATATA
1 ATATACTTCAAACACTATATATATA
50949173 TTTTACATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.46, C:0.12, G:0.00, T:0.42
Consensus pattern (25 bp):
ATATACTTCAAACACTATATATATA
Found at i:50950532 original size:17 final size:17
Alignment explanation
Indices: 50950510--50950549 Score: 80
Period size: 17 Copynumber: 2.4 Consensus size: 17
50950500 ATTGGTTAAG
50950510 TTGCATTTAGGATAATT
1 TTGCATTTAGGATAATT
50950527 TTGCATTTAGGATAATT
1 TTGCATTTAGGATAATT
50950544 TTGCAT
1 TTGCAT
50950550 CTAGTTATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.28, C:0.07, G:0.17, T:0.47
Consensus pattern (17 bp):
TTGCATTTAGGATAATT
Found at i:50950638 original size:18 final size:18
Alignment explanation
Indices: 50950615--50950650 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
50950605 TTGTAAAACG
50950615 TTAATTTTGCAAAATATT
1 TTAATTTTGCAAAATATT
50950633 TTAATTTTGCAAAATATT
1 TTAATTTTGCAAAATATT
50950651 GATTAACATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.50
Consensus pattern (18 bp):
TTAATTTTGCAAAATATT
Found at i:50950838 original size:9 final size:10
Alignment explanation
Indices: 50950815--50950848 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
50950805 TACAAATTGG
50950815 TTTATTTATT
1 TTTATTTATT
50950825 TTTATTTATT
1 TTTATTTATT
*
50950835 TTATTTTTATT
1 TT-TATTTATT
50950846 TTT
1 TTT
50950849 TGTGATTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (10 bp):
TTTATTTATT
Found at i:50950839 original size:15 final size:14
Alignment explanation
Indices: 50950815--50950846 Score: 55
Period size: 15 Copynumber: 2.2 Consensus size: 14
50950805 TACAAATTGG
50950815 TTTATTTATTTTTA
1 TTTATTTATTTTTA
50950829 TTTATTTTATTTTTA
1 TTTA-TTTATTTTTA
50950844 TTT
1 TTT
50950847 TTTGTGATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTATTTATTTTTA
Found at i:50950856 original size:21 final size:20
Alignment explanation
Indices: 50950819--50950862 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 20
50950809 AATTGGTTTA
*
50950819 TTTATTTTTATTTATTTTATT
1 TTTATTTTTATTGA-TTTATT
50950840 TTTATTTTT-TGTGATTTATT
1 TTTATTTTTAT-TGATTTATT
50950860 TTT
1 TTT
50950863 TAGGTGTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.16, C:0.00, G:0.05, T:0.80
Consensus pattern (20 bp):
TTTATTTTTATTGATTTATT
Found at i:50958542 original size:21 final size:21
Alignment explanation
Indices: 50958516--50958559 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
50958506 GCTTCGAGAG
*
50958516 CTATAATTAGCGATGAAGGAT
1 CTATAATTAACGATGAAGGAT
*
50958537 CTATAATTAATGATGAAGGAT
1 CTATAATTAACGATGAAGGAT
50958558 CT
1 CT
50958560 CACTTTGTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.39, C:0.09, G:0.20, T:0.32
Consensus pattern (21 bp):
CTATAATTAACGATGAAGGAT
Found at i:50965806 original size:46 final size:46
Alignment explanation
Indices: 50965739--50965908 Score: 182
Period size: 46 Copynumber: 3.7 Consensus size: 46
50965729 TGTAACCCGC
*
50965739 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCAGGTGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCAGGTGTTCGCTT
* * *
50965785 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGATGCCTAG-TT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCAGG-TG-TTCGCTT
* *** * * ***
50965831 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCTT
1 CCATAAGT-GAACTCAGACTCAACTCAACGAGCTCAGGTGTTCGCTT
50965878 CCATAAGTGAACTCAGACTCAACTCAACGAG
1 CCATAAGTGAACTCAGACTCAACTCAACGAG
50965909 TTCGGATGCC
Statistics
Matches: 100, Mismatches: 19, Indels: 10
0.78 0.15 0.08
Matches are distributed among these distances:
45 2 0.02
46 64 0.64
47 33 0.33
48 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCAGGTGTTCGCTT
Found at i:50965860 original size:93 final size:93
Alignment explanation
Indices: 50965747--50965918 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
50965737 GCCCATAAGT
*** *
50965747 GAACTCAGACTCAACTCAACGAGCTCAGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
50965812 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * *
50965840 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCTTCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
50965905 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
50965919 CAATATCCTA
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:50983058 original size:40 final size:40
Alignment explanation
Indices: 50982991--50983235 Score: 284
Period size: 40 Copynumber: 6.2 Consensus size: 40
50982981 CCTTCGGAGT
** * *
50982991 TTAG-CCGGATATAGCCACTAGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* *
50983030 TTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
*
50983070 TTAGCCCGG-TATAATAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* * *
50983109 TTAGCCCGGATATAATAGCTCGCACAAACGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* **
50983149 TTAGCCCGGATATAGTAGCTCGCATGAATG-CTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* ** * *
50983188 TTAGCCCGAATA-AGCCACTAGCTCAAATG-CTCTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCT-TCGGGAC
50983227 TTAGCCCGG
1 TTAGCCCGG
50983236 TTATCATCCG
Statistics
Matches: 181, Mismatches: 22, Indels: 6
0.87 0.11 0.03
Matches are distributed among these distances:
38 12 0.07
39 76 0.42
40 93 0.51
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:50983112 original size:79 final size:79
Alignment explanation
Indices: 50983014--50983236 Score: 281
Period size: 79 Copynumber: 2.8 Consensus size: 79
50983004 GCCACTAGCT
* *
50983014 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
50983079 TATAATAACTCGCA
66 TATAATAACTCGCA
* * * *
50983093 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCACAAACGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
* *
50983158 ATATAGTAGCTCGCA
66 -TATAATAACTCGCA
** * ** *
50983173 TGAATG-CTTCGGGACTTAGCCCGAATA-AGCCACTAGCTCAAATG-CTCTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCT-TCGGGACTTAGCCCG
50983235 GT
65 GT
50983237 TATCATCCGA
Statistics
Matches: 125, Mismatches: 17, Indels: 6
0.84 0.11 0.04
Matches are distributed among these distances:
77 3 0.02
78 26 0.21
79 80 0.64
80 16 0.13
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
TATAATAACTCGCA
Found at i:50986130 original size:43 final size:43
Alignment explanation
Indices: 50986012--50986132 Score: 145
Period size: 42 Copynumber: 2.8 Consensus size: 43
50986002 TCACATATTG
* * * * **
50986012 ATGCCACTGTCCTAGACAAGGTCTTACACGAAATCATAATATG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCATAATACA
* *
50986055 ATGCCAATGT-CCAGACATTGTCTTACACGTAATCTTAATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCATAATACA
* *
50986097 ATGCCAATGTCCCGGACATGGTCTTACATGTAATCA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCA
50986133 CAACTTGATA
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 35 0.54
43 30 0.46
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCATAATACA
Found at i:50989630 original size:42 final size:42
Alignment explanation
Indices: 50989584--50989737 Score: 184
Period size: 42 Copynumber: 3.6 Consensus size: 42
50989574 TAAGACTATG
* * * *
50989584 TGTAATACCATATCTAGGATATGGCATCTATATGGGACTTCG
1 TGTAAGACCATATCTAGGATATGGCATCGATATGAGACTTCA
*
50989626 TGTAAGACCATATCTAGGATATGGCATCGATATGATACTTCA
1 TGTAAGACCATATCTAGGATATGGCATCGATATGAGACTTCA
* * * * *
50989668 TGCAAGACCATAGCTAGGCTATTGGCATCGATACGAGA-TCCCA
1 TGTAAGACCATATCTAGGATA-TGGCATCGATATGAGACT-TCA
*
50989711 TGTAAGACCATATCTGGGATATGGCAT
1 TGTAAGACCATATCTAGGATATGGCAT
50989738 TGTTATAGTA
Statistics
Matches: 95, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
42 62 0.65
43 33 0.35
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATATCTAGGATATGGCATCGATATGAGACTTCA
Found at i:50997207 original size:23 final size:23
Alignment explanation
Indices: 50997180--50997467 Score: 269
Period size: 23 Copynumber: 12.5 Consensus size: 23
50997170 CAAAGTGCCA
* *
50997180 CACTGTAATATAGCCAAAGCTAT
1 CACTGTAATGTAGCCAAAGCTAC
* * *
50997203 CACTGCAACGTAGCCGAAGCTAC
1 CACTGTAATGTAGCCAAAGCTAC
*
50997226 CACTGTATTGTAGCCAAAGCTAC
1 CACTGTAATGTAGCCAAAGCTAC
* *
50997249 CACTGTATTGTAGCCGAAGCTAC
1 CACTGTAATGTAGCCAAAGCTAC
50997272 CACTG-AGATGTAGCCAAAGCTAC
1 CACTGTA-ATGTAGCCAAAGCTAC
* *
50997295 CACTGTATTGTAGCCGAAGCTAC
1 CACTGTAATGTAGCCAAAGCTAC
*
50997318 CACTG-AGATGTAGCCAAATCTAC
1 CACTGTA-ATGTAGCCAAAGCTAC
* *
50997341 CACTGTATTGTAGCCAAAGATAC
1 CACTGTAATGTAGCCAAAGCTAC
* *
50997364 CACTG-AGATGTAGTCGAAGCTAC
1 CACTGTA-ATGTAGCCAAAGCTAC
* * * **
50997387 CACTATATTGCAGCTGAAGCTAC
1 CACTGTAATGTAGCCAAAGCTAC
* *
50997410 CACTGTATTGTAGCCGAAGCTAC
1 CACTGTAATGTAGCCAAAGCTAC
* **
50997433 AACTG-AGATGTAGTGAAAGCTAC
1 CACTGTA-ATGTAGCCAAAGCTAC
* *
50997456 CATTGAAATGTA
1 CACTGTAATGTA
50997468 TCCTATAGAT
Statistics
Matches: 218, Mismatches: 39, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
22 4 0.02
23 210 0.96
24 4 0.02
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (23 bp):
CACTGTAATGTAGCCAAAGCTAC
Found at i:50997457 original size:46 final size:46
Alignment explanation
Indices: 50997190--50997437 Score: 320
Period size: 46 Copynumber: 5.4 Consensus size: 46
50997180 CACTGTAATA
* * ** *
50997190 TAGCCAAAGCTATCACTGCAACGTAGCCGAAGCTACCACTGTA-TTG
1 TAGCCAAAGCTACCACTGTATTGTAGCCGAAGCTACCACTG-AGATG
50997236 TAGCCAAAGCTACCACTGTATTGTAGCCGAAGCTACCACTGAGATG
1 TAGCCAAAGCTACCACTGTATTGTAGCCGAAGCTACCACTGAGATG
50997282 TAGCCAAAGCTACCACTGTATTGTAGCCGAAGCTACCACTGAGATG
1 TAGCCAAAGCTACCACTGTATTGTAGCCGAAGCTACCACTGAGATG
* * *
50997328 TAGCCAAATCTACCACTGTATTGTAGCCAAAGATACCACTGAGATG
1 TAGCCAAAGCTACCACTGTATTGTAGCCGAAGCTACCACTGAGATG
* * * * * *
50997374 TAGTCGAAGCTACCACTATATTGCAGCTGAAGCTACCACTGTA-TTG
1 TAGCCAAAGCTACCACTGTATTGTAGCCGAAGCTACCACTG-AGATG
* *
50997420 TAGCCGAAGCTACAACTG
1 TAGCCAAAGCTACCACTG
50997438 AGATGTAGTG
Statistics
Matches: 180, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
45 1 0.01
46 178 0.99
47 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (46 bp):
TAGCCAAAGCTACCACTGTATTGTAGCCGAAGCTACCACTGAGATG
Found at i:50999804 original size:13 final size:13
Alignment explanation
Indices: 50999786--50999813 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
50999776 ATAATTACAC
50999786 ATAATTATTCACA
1 ATAATTATTCACA
50999799 ATAATTATTCACA
1 ATAATTATTCACA
50999812 AT
1 AT
50999814 CTTTCAATAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.14, G:0.00, T:0.39
Consensus pattern (13 bp):
ATAATTATTCACA
Found at i:51003627 original size:23 final size:23
Alignment explanation
Indices: 51003601--51003926 Score: 367
Period size: 23 Copynumber: 14.2 Consensus size: 23
51003591 ACTGTAACGC
51003601 AGCCGAAGCTACCACTATATTGT
1 AGCCGAAGCTACCACTATATTGT
* * *
51003624 AGCCAAAGCTACCATTGTATTGT
1 AGCCGAAGCTACCACTATATTGT
* *
51003647 CGCCGAAGCTACCACTA-AGATGT
1 AGCCGAAGCTACCACTATA-TTGT
51003670 AGCCGAAGCTACCACTATATTGT
1 AGCCGAAGCTACCACTATATTGT
* *
51003693 AGCCAAAGCTACCACTGTATTGT
1 AGCCGAAGCTACCACTATATTGT
* *
51003716 CGCCGAAGCTACCACTA-AGATGT
1 AGCCGAAGCTACCACTATA-TTGT
*
51003739 AGCCGAAGCTACCACTA-AGATGT
1 AGCCGAAGCTACCACTATA-TTGT
* * *
51003762 AGCCAAAGCTACCACTGTATTTT
1 AGCCGAAGCTACCACTATATTGT
*
51003785 AGCTGAAGCTACCACTGATA-TGT
1 AGCCGAAGCTACCACT-ATATTGT
51003808 AGCCGAAGCTACCACTATATTGT
1 AGCCGAAGCTACCACTATATTGT
* * *
51003831 AGACGAAGCTAGCACTGTATTGT
1 AGCCGAAGCTACCACTATATTGT
*
51003854 AGCCGAAGCTACCACTA-AGATGT
1 AGCCGAAGCTACCACTATA-TTGT
*
51003877 AGCC-AGAGCTACCATTATATTGT
1 AGCCGA-AGCTACCACTATATTGT
* *
51003900 AGCCGAAGCTACCACTAAAATGT
1 AGCCGAAGCTACCACTATATTGT
51003923 AGCC
1 AGCC
51003927 TATAGATTCC
Statistics
Matches: 255, Mismatches: 38, Indels: 20
0.81 0.12 0.06
Matches are distributed among these distances:
22 7 0.03
23 242 0.95
24 6 0.02
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (23 bp):
AGCCGAAGCTACCACTATATTGT
Found at i:51003926 original size:69 final size:69
Alignment explanation
Indices: 51003601--51003915 Score: 481
Period size: 69 Copynumber: 4.6 Consensus size: 69
51003591 ACTGTAACGC
* *
51003601 AGCCGAAGCTACCACTATATTGTAGCCAAAGCTACCATTGTATTGTCGCCGAAGCTACCACTAAG
1 AGCCGAAGCTACCACTATATTGTAGCCAAAGCTACCACTGTATTGTAGCCGAAGCTACCACTAAG
51003666 ATGT
66 ATGT
*
51003670 AGCCGAAGCTACCACTATATTGTAGCCAAAGCTACCACTGTATTGTCGCCGAAGCTACCACTAAG
1 AGCCGAAGCTACCACTATATTGTAGCCAAAGCTACCACTGTATTGTAGCCGAAGCTACCACTAAG
51003735 ATGT
66 ATGT
* * * *
51003739 AGCCGAAGCTACCACTA-AGATGTAGCCAAAGCTACCACTGTATTTTAGCTGAAGCTACCACTGA
1 AGCCGAAGCTACCACTATA-TTGTAGCCAAAGCTACCACTGTATTGTAGCCGAAGCTACCACTAA
*
51003803 TATGT
65 GATGT
* * *
51003808 AGCCGAAGCTACCACTATATTGTAGACGAAGCTAGCACTGTATTGTAGCCGAAGCTACCACTAAG
1 AGCCGAAGCTACCACTATATTGTAGCCAAAGCTACCACTGTATTGTAGCCGAAGCTACCACTAAG
51003873 ATGT
66 ATGT
* *
51003877 AGCC-AGAGCTACCATTATATTGTAGCCGAAGCTACCACT
1 AGCCGA-AGCTACCACTATATTGTAGCCAAAGCTACCACT
51003916 AAAATGTAGC
Statistics
Matches: 225, Mismatches: 18, Indels: 6
0.90 0.07 0.02
Matches are distributed among these distances:
68 2 0.01
69 222 0.99
70 1 0.00
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (69 bp):
AGCCGAAGCTACCACTATATTGTAGCCAAAGCTACCACTGTATTGTAGCCGAAGCTACCACTAAG
ATGT
Found at i:51005865 original size:25 final size:25
Alignment explanation
Indices: 51005818--51005883 Score: 107
Period size: 25 Copynumber: 2.7 Consensus size: 25
51005808 TTTTAATAAT
*
51005818 TGGGGCAAA-CCCCTTTCGGTAAAC
1 TGGGGCAAAGCCCTTTTCGGTAAAC
51005842 TGGGGCAAAGCCCTTTTCGGTAAAC
1 TGGGGCAAAGCCCTTTTCGGTAAAC
*
51005867 TGGGGCAAAGCCGTTTT
1 TGGGGCAAAGCCCTTTT
51005884 AGCACTTCCT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
24 9 0.23
25 30 0.77
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (25 bp):
TGGGGCAAAGCCCTTTTCGGTAAAC
Found at i:51006149 original size:27 final size:27
Alignment explanation
Indices: 51006106--51006279 Score: 231
Period size: 27 Copynumber: 6.4 Consensus size: 27
51006096 TACCCCACAT
* *
51006106 GGTATCTCAGTAATTCTACCCTACGGG
1 GGTATTTCAGTAATTCTACCCTACAGG
* * *
51006133 GGTATTTCGGTATTTCTACCCTACAAG
1 GGTATTTCAGTAATTCTACCCTACAGG
* *
51006160 GGTATTTCGGTAATTCTACCCTATAGG
1 GGTATTTCAGTAATTCTACCCTACAGG
51006187 GGTATTTCAGTAATTCTACCCTACAGG
1 GGTATTTCAGTAATTCTACCCTACAGG
* * * *
51006214 GGTATTTCGGTATTTCTACCTTACAAG
1 GGTATTTCAGTAATTCTACCCTACAGG
* *
51006241 GGTATTTTAGTAATTCTACCCAACAGG
1 GGTATTTCAGTAATTCTACCCTACAGG
51006268 GGTATTTCAGTA
1 GGTATTTCAGTA
51006280 TTTTACAAAT
Statistics
Matches: 126, Mismatches: 21, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 126 1.00
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.36
Consensus pattern (27 bp):
GGTATTTCAGTAATTCTACCCTACAGG
Found at i:51006204 original size:81 final size:81
Alignment explanation
Indices: 51006106--51006279 Score: 285
Period size: 81 Copynumber: 2.1 Consensus size: 81
51006096 TACCCCACAT
* * *
51006106 GGTATCTCAGTAATTCTACCCTACGGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGT
1 GGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGT
* *
51006171 AATTCTACCCTATAGG
66 AATTCTACCCAACAGG
* *
51006187 GGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCTTACAAGGGTATTTTAGT
1 GGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGT
51006252 AATTCTACCCAACAGG
66 AATTCTACCCAACAGG
51006268 GGTATTTCAGTA
1 GGTATTTCAGTA
51006280 TTTTACAAAT
Statistics
Matches: 86, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
81 86 1.00
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.36
Consensus pattern (81 bp):
GGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGT
AATTCTACCCAACAGG
Found at i:51006295 original size:27 final size:27
Alignment explanation
Indices: 51006237--51006405 Score: 162
Period size: 27 Copynumber: 6.3 Consensus size: 27
51006227 TTCTACCTTA
* * *
51006237 CAAGGGTATTTTAGTAATTCTACCCAA-
1 CAAGGGTATTTTGGTAATTTTA-CAAAT
* **
51006264 CAGGGGTATTTCAGT-ATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
51006290 CAAGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
51006317 CAGGGGTATTTTGGTAATTTTACTAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* ** *
51006344 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* **
51006371 CAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
51006398 CGAGGGTA
1 CAAGGGTA
51006406 AAATGGCAAT
Statistics
Matches: 119, Mismatches: 21, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
25 3 0.03
26 17 0.14
27 99 0.83
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:51006355 original size:54 final size:54
Alignment explanation
Indices: 51006239--51006405 Score: 196
Period size: 54 Copynumber: 3.1 Consensus size: 54
51006229 CTACCTTACA
* * * * * *
51006239 AGGGTATTTTAGTAATTCTACCCAA-CAGGGGTATTTCAGT-ATTTTACAAATCA
1 AGGGTATTTTGGTAATTTTA-CAAACCAGGGGTATTTTAGTAATTTTACTAATCG
*
51006292 AGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACTAATCG
1 AGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACTAATCG
** * *
51006346 AGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTT-GTAAATCG
1 AGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACT-AATCG
51006400 AGGGTA
1 AGGGTA
51006406 AAATGGCAAT
Statistics
Matches: 99, Mismatches: 12, Indels: 5
0.85 0.10 0.04
Matches are distributed among these distances:
52 3 0.03
53 32 0.32
54 64 0.65
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.39
Consensus pattern (54 bp):
AGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACTAATCG
Done.