Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 158 of 356
Found at i:51006416 original size:27 final size:27
Alignment explanation
Indices: 51006384--51006564 Score: 254
Period size: 27 Copynumber: 6.7 Consensus size: 27
51006374 GGGTATTTTA
* *
51006384 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
51006411 GCAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
51006438 GTAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
51006465 ATAATTCTATAAATCGAGAGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
51006492 GTAATTCTATAAATCGAGAGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
51006519 GTAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
51006546 GTAATTCTATAAATCGAGG
1 GTAATTCTATAAATCGAGG
51006565 ATATTTGCGT
Statistics
Matches: 140, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 140 1.00
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.30
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:51006422 original size:54 final size:54
Alignment explanation
Indices: 51006313--51006463 Score: 160
Period size: 54 Copynumber: 2.8 Consensus size: 54
51006303 GTAATTTTAC
* * * *** * *
51006313 AAACCAGGGGTATTTTGGTAATTTTACT-AATCGAGGGTATTTTGGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTT-GTAAATCGAGGGTAAAATGGCAATTCTGT
51006367 AAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAATGGCAATTCTGT
1 AAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAATGGCAATTCTGT
* * *** *
51006421 AAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAAT
1 AAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAAT
51006464 AATAATTCTA
Statistics
Matches: 82, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
53 1 0.01
54 81 0.99
ACGTcount: A:0.34, C:0.08, G:0.23, T:0.34
Consensus pattern (54 bp):
AAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAATGGCAATTCTGT
Found at i:51006426 original size:81 final size:81
Alignment explanation
Indices: 51006357--51006563 Score: 225
Period size: 81 Copynumber: 2.6 Consensus size: 81
51006347 GGGTATTTTG
* *** * * * * *
51006357 GTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAATGGCAATTCTGTA
1 GTAATTCTGTAAACCAAGGGTAAAATAATAATTCTATAAATCGAGAGTAAAATGGCAATTCTATA
51006422 AATCGAGGGTAAAATA
66 AATCGAGGGTAAAATA
* * *
51006438 GTAATTCTGTAAATCGAGGGTAAAATAATAATTCTATAAATCGAGAGTAAAATGGTAATTCTATA
1 GTAATTCTGTAAACCAAGGGTAAAATAATAATTCTATAAATCGAGAGTAAAATGGCAATTCTATA
* **
51006503 AATCGAGAGTAAAACG
66 AATCGAGGGTAAAATA
* *** **
51006519 GTAATTCTATAAATTGAGGGTAAAATGGTAATTCTATAAATCGAG
1 GTAATTCTGTAAACCAAGGGTAAAATAATAATTCTATAAATCGAG
51006564 GATATTTGCG
Statistics
Matches: 107, Mismatches: 19, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 107 1.00
ACGTcount: A:0.41, C:0.08, G:0.20, T:0.31
Consensus pattern (81 bp):
GTAATTCTGTAAACCAAGGGTAAAATAATAATTCTATAAATCGAGAGTAAAATGGCAATTCTATA
AATCGAGGGTAAAATA
Found at i:51006583 original size:27 final size:27
Alignment explanation
Indices: 51006544--51006608 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
51006534 GAGGGTAAAA
* *
51006544 TGGTAATTCTATAAATCGAGGATA-TT
1 TGGTAATTTTATAAACCGAGGATACTT
* *
51006570 TGCGTAGTTTTATAAACCGAGGGTACTT
1 TG-GTAATTTTATAAACCGAGGATACTT
51006598 TGGTAATTTTA
1 TGGTAATTTTA
51006609 CAACTGGGGG
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
26 2 0.06
27 26 0.81
28 4 0.12
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (27 bp):
TGGTAATTTTATAAACCGAGGATACTT
Found at i:51011040 original size:25 final size:26
Alignment explanation
Indices: 51011012--51011117 Score: 121
Period size: 25 Copynumber: 4.2 Consensus size: 26
51011002 GGAGGCCTAG
*
51011012 CCTTTTTTAAT-AACTAGGGCAAA-C
1 CCTTTTTTAATAAACTGGGGCAAAGC
* * *
51011036 CCCTTTTTGATAAACTGGGCCAAAGC
1 CCTTTTTTAATAAACTGGGGCAAAGC
**
51011062 CC-TTTTTGGTAAACTGGGGCAAAGC
1 CCTTTTTTAATAAACTGGGGCAAAGC
*
51011087 CC-TTTTTAGTAAACTGGGGCAAAGC
1 CCTTTTTTAATAAACTGGGGCAAAGC
51011112 CCTTTT
1 CCTTTT
51011118 AGCACTTCCT
Statistics
Matches: 72, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
24 9 0.12
25 57 0.79
26 6 0.08
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (26 bp):
CCTTTTTTAATAAACTGGGGCAAAGC
Found at i:51011082 original size:50 final size:50
Alignment explanation
Indices: 51011023--51011117 Score: 147
Period size: 50 Copynumber: 1.9 Consensus size: 50
51011013 CTTTTTTAAT
51011023 AACTAGGGCAAACCCCTTTTT-GATAAACTGGGCCAAAGCCCTTTTTGGTA
1 AACTAGGGCAAACCCCTTTTTAG-TAAACTGGGCCAAAGCCCTTTTTGGTA
* * *
51011073 AACTGGGGCAAAGCCCTTTTTAGTAAACTGGGGCAAAGCCCTTTT
1 AACTAGGGCAAACCCCTTTTTAGTAAACTGGGCCAAAGCCCTTTT
51011118 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
50 40 0.98
51 1 0.02
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.27
Consensus pattern (50 bp):
AACTAGGGCAAACCCCTTTTTAGTAAACTGGGCCAAAGCCCTTTTTGGTA
Found at i:51011371 original size:27 final size:27
Alignment explanation
Indices: 51011341--51011564 Score: 263
Period size: 27 Copynumber: 8.3 Consensus size: 27
51011331 ACCCCATATA
51011341 GGTATCTT-GGTAATTCTACCCTACAGG
1 GGTAT-TTCGGTAATTCTACCCTACAGG
* * * *
51011368 GGTATTTTGGTATTTCTGCCCTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
51011395 GGTATTTCGGTAATTCTACCCTAC-GG
1 GGTATTTCGGTAATTCTACCCTACAGG
**
51011421 GGTATTTCAATAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * * *
51011448 GGTATTTTGGTAATTCTACCTTATAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
51011475 GGTATTTCAGTAATTCCACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * *
51011502 GGTATTTCGGTATTTCTACCCTATAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
** *
51011529 GGTATTTTAGTAATTCTATCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
51011556 GGTATTTCG
1 GGTATTTCG
51011565 ATATTTTACA
Statistics
Matches: 161, Mismatches: 34, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
26 25 0.16
27 136 0.84
ACGTcount: A:0.23, C:0.19, G:0.20, T:0.38
Consensus pattern (27 bp):
GGTATTTCGGTAATTCTACCCTACAGG
Found at i:51011439 original size:80 final size:81
Alignment explanation
Indices: 51011351--51011564 Score: 295
Period size: 80 Copynumber: 2.7 Consensus size: 81
51011341 GGTATCTTGG
* * *
51011351 TAATTCTACCCTACAGGGGTATTTTGGTATTTCTGCCCTACAAGGGTATTTCGGTAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAAGGGTATTTCGGTAATTCCACCC
51011416 TAC-GGGGTATTTCAA
66 TACAGGGGTATTTCAA
* * *
51011431 TAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCTTATAAGGGTATTTCAGTAATTCCACCC
1 TAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAAGGGTATTTCGGTAATTCCACCC
**
51011496 TACAGGGGTATTTCGG
66 TACAGGGGTATTTCAA
* * * * * *
51011512 TATTTCTACCCTATAAGGGTATTTTAGTAATTCTATCCTACAGGGGTATTTCG
1 TAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAAGGGTATTTCG
51011565 ATATTTTACA
Statistics
Matches: 116, Mismatches: 17, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
80 62 0.53
81 54 0.47
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (81 bp):
TAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAAGGGTATTTCGGTAATTCCACCC
TACAGGGGTATTTCAA
Found at i:51011583 original size:27 final size:26
Alignment explanation
Indices: 51011553--51011654 Score: 82
Period size: 27 Copynumber: 3.8 Consensus size: 26
51011543 TCTATCCTAC
51011553 AGGGGTATTTCGAT-ATTTTACAAATCA
1 AGGGGTATTT-GATAATTTTACAAA-CA
* * *
51011580 A-GGGAATTTTGGTAATTTTACAAACT
1 AGGGGTA-TTTGATAATTTTACAAACA
* * *
51011606 AGGCGTATTTTAGTAATTTTACAAACC
1 AGGGGTATTTGA-TAATTTTACAAACA
*
51011633 AGGGGTATTTTGGTAATTTTAC
1 AGGGGTA-TTTGATAATTTTAC
51011655 TGATCGAGGG
Statistics
Matches: 59, Mismatches: 11, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
26 11 0.19
27 45 0.76
28 3 0.05
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (26 bp):
AGGGGTATTTGATAATTTTACAAACA
Found at i:51011636 original size:134 final size:134
Alignment explanation
Indices: 51011363--51011647 Score: 310
Period size: 134 Copynumber: 2.1 Consensus size: 134
51011353 ATTCTACCCT
* *
51011363 ACAGGGGTATTTTGGTATTTCTGCCCTACAAGGGTATTTCGGTAATTCTACCCTACGGGGTATTT
1 ACAGGGGTATTTTGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACGGGGTATTT
** * * **
51011428 CAATAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCTTATAAGGGTATTTCAGTAATTCCA
66 CAATAATTCTACAATACAAGGGAATTTTGGTAATTCTACCAAATAAGGGTATTTCAGTAATTCCA
**
51011493 CCCT
131 CCAA
* * * *
51011497 ACAGGGGTATTTCGGTATTTCTACCCTATAAGGGTATTTTAGTAATTCTATCCTACAGGGGTATT
1 ACAGGGGTATTTTGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTAC-GGGGTATT
* * * *
51011562 TCGAT-ATTTTACAA-ATCAAGGGAATTTTGGTAATTTTA-CAAACT-AGGCGTATTTTAGTAAT
65 TCAATAATTCTACAATA-CAAGGGAATTTTGGTAATTCTACCAAA-TAAGG-GTATTTCAGTAAT
**
51011623 TTTA-CAA
127 TCCACCAA
51011630 ACCAGGGGTATTTTGGTA
1 A-CAGGGGTATTTTGGTA
51011648 ATTTTACTGA
Statistics
Matches: 125, Mismatches: 21, Indels: 10
0.80 0.13 0.06
Matches are distributed among these distances:
133 8 0.06
134 105 0.84
135 12 0.10
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.38
Consensus pattern (134 bp):
ACAGGGGTATTTTGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACGGGGTATTT
CAATAATTCTACAATACAAGGGAATTTTGGTAATTCTACCAAATAAGGGTATTTCAGTAATTCCA
CCAA
Found at i:51011643 original size:54 final size:54
Alignment explanation
Indices: 51011567--51011720 Score: 177
Period size: 54 Copynumber: 2.9 Consensus size: 54
51011557 GTATTTCGAT
* * *
51011567 ATTTTACAAATCAAGGGAATTTTGGTAATTTTAC-AAACTAGGCGTATTTTAGTA
1 ATTTTACAAACCAAGGGTATTTTGGTAATTTTACTAAACGAGG-GTATTTTAGTA
* * * *
51011621 ATTTTACAAACCAGGGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTA
1 ATTTTACAAACCAAGGGTATTTTGGTAATTTTACTAAACGAGGGTATTTTAGTA
** * *
51011675 ATTTTGTAAACCAAGGGTATTTTAGTAATTTT-GTAAATCGAGGGTA
1 ATTTTACAAACCAAGGGTATTTTGGTAATTTTACTAAA-CGAGGGTA
51011721 AAACGGTAAT
Statistics
Matches: 84, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
53 2 0.02
54 77 0.92
55 5 0.06
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (54 bp):
ATTTTACAAACCAAGGGTATTTTGGTAATTTTACTAAACGAGGGTATTTTAGTA
Found at i:51011665 original size:27 final size:26
Alignment explanation
Indices: 51011567--51011706 Score: 145
Period size: 27 Copynumber: 5.2 Consensus size: 26
51011557 GTATTTCGAT
* *
51011567 ATTTTACAAATCAAGGGAATTTTGGTA
1 ATTTTACAAA-CCAGGGTATTTTGGTA
* *
51011594 ATTTTACAAACTAGGCGTATTTTAGTA
1 ATTTTACAAACCAGG-GTATTTTGGTA
51011621 ATTTTACAAACCAGGGGTATTTTGGTA
1 ATTTTACAAACCA-GGGTATTTTGGTA
* * *
51011648 ATTTTACTGATCGAGGGTATTTTGGTA
1 ATTTTAC-AAACCAGGGTATTTTGGTA
** *
51011675 ATTTTGTAAACCAAGGGTATTTTAGTA
1 ATTTTACAAACC-AGGGTATTTTGGTA
51011702 ATTTT
1 ATTTT
51011707 GTAAATCGAG
Statistics
Matches: 95, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
26 6 0.06
27 84 0.88
28 5 0.05
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (26 bp):
ATTTTACAAACCAGGGTATTTTGGTA
Found at i:51011695 original size:81 final size:79
Alignment explanation
Indices: 51011526--51011706 Score: 211
Period size: 81 Copynumber: 2.3 Consensus size: 79
51011516 TCTACCCTAT
* **
51011526 AAGGGTATTTTAGTAATTCTATCCTACAGGGGTATTTCGATATTTTACAAATCAAGGGAATTTTG
1 AAGGGTATTTTAGTAATTTTATCAAACAGGGGTATTTCGATATTTTACAAATCAAGGGAATTTTG
51011591 GTAATTTTACAAAC
66 GTAATTTTACAAAC
* * * ** * *
51011605 TAGGCGTATTTTAGTAATTTTA-CAAACCAGGGGTATTTTGGTAATTTTACTGATCGAGGGTATT
1 AAGG-GTATTTTAGTAATTTTATCAAA-CAGGGGTATTTCGAT-ATTTTACAAATCAAGGGAATT
**
51011669 TTGGTAATTTTGTAAACC
63 TTGGTAATTTTACAAA-C
51011687 AAGGGTATTTTAGTAATTTT
1 AAGGGTATTTTAGTAATTTT
51011707 GTAAATCGAG
Statistics
Matches: 85, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
79 5 0.06
80 29 0.34
81 47 0.55
82 4 0.05
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (79 bp):
AAGGGTATTTTAGTAATTTTATCAAACAGGGGTATTTCGATATTTTACAAATCAAGGGAATTTTG
GTAATTTTACAAAC
Found at i:51011729 original size:27 final size:27
Alignment explanation
Indices: 51011699--51011879 Score: 272
Period size: 27 Copynumber: 6.7 Consensus size: 27
51011689 GGGTATTTTA
* * *
51011699 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
**
51011726 GTAATTCTATAAATTAAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
51011753 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
51011780 ATAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
51011807 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
51011834 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
51011861 GTAATTCTATAAATCGAGG
1 GTAATTCTATAAATCGAGG
51011880 ATATTTGGGT
Statistics
Matches: 138, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 138 1.00
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:51011746 original size:81 final size:81
Alignment explanation
Indices: 51011670--51011879 Score: 260
Period size: 81 Copynumber: 2.6 Consensus size: 81
51011660 GAGGGTATTT
* ** * * *
51011670 TGGTAATTTTGTAAACCAAGGGT-ATTTTAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCT
1 TGGTAATTCTGTAAACCAAGGGTAAAATGA-TAATTCTATAAATCGAGGGTAAAACGGTAATTCT
51011734 ATAAATTAAGGGTAAAA
65 ATAAATTAAGGGTAAAA
* * * *
51011751 TGGTAATTCTGTAAATCGAGGGTAAAATGATAATTCTATAAATTGAGGGTAAAATGGTAATTCTA
1 TGGTAATTCTGTAAACCAAGGGTAAAATGATAATTCTATAAATCGAGGGTAAAACGGTAATTCTA
**
51011816 TAAATCGAGGGTAAAA
66 TAAATTAAGGGTAAAA
* * * *
51011832 TGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGG
1 TGGTAATTCTGTAAACCAAGGGTAAAATGATAATTCTATAAATCGAGG
51011880 ATATTTGGGT
Statistics
Matches: 113, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
81 110 0.97
82 3 0.03
ACGTcount: A:0.39, C:0.07, G:0.22, T:0.32
Consensus pattern (81 bp):
TGGTAATTCTGTAAACCAAGGGTAAAATGATAATTCTATAAATCGAGGGTAAAACGGTAATTCTA
TAAATTAAGGGTAAAA
Found at i:51013035 original size:41 final size:41
Alignment explanation
Indices: 51012978--51013060 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
51012968 TGATCTATTT
51012978 GCCATTTAAAGACTTCTAGTTTAAACCCCAATTTCAAACAA
1 GCCATTTAAAGACTTCTAGTTTAAACCCCAATTTCAAACAA
51013019 GCCATTTAAAGACTTCTAGTTTAAACCCCAATTTCAAACAA
1 GCCATTTAAAGACTTCTAGTTTAAACCCCAATTTCAAACAA
51013060 G
1 G
51013061 GACTTATATT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.39, C:0.24, G:0.08, T:0.29
Consensus pattern (41 bp):
GCCATTTAAAGACTTCTAGTTTAAACCCCAATTTCAAACAA
Found at i:51013944 original size:28 final size:29
Alignment explanation
Indices: 51013861--51013944 Score: 100
Period size: 28 Copynumber: 3.0 Consensus size: 29
51013851 TCATACCTAT
* *
51013861 ATATGGCCCACTAGGCCC-AATTTCTTTC
1 ATATGGCCCACTAGGCCCAAATTACATTC
* * *
51013889 ATGTGGCCCATTAGGCCCAAATCACATTC
1 ATATGGCCCACTAGGCCCAAATTACATTC
*
51013918 ATATGG-CCACTAGGCCCAAATTGCATT
1 ATATGGCCCACTAGGCCCAAATTACATT
51013945 TAAAGTCATG
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
28 34 0.74
29 12 0.26
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27
Consensus pattern (29 bp):
ATATGGCCCACTAGGCCCAAATTACATTC
Found at i:51016337 original size:22 final size:23
Alignment explanation
Indices: 51016260--51016386 Score: 132
Period size: 23 Copynumber: 5.4 Consensus size: 23
51016250 GCCATGATAG
51016260 GTAAGCTCCTATTGAGCTGATGAACA
1 GTAAGCT-CTATTGAGCTGA--AACA
* *
51016286 ATAAGCTCTATTGAGCTGAAACT
1 GTAAGCTCTATTGAGCTGAAACA
*
51016309 GTAAGCTCTATCGAGCTG-AACA
1 GTAAGCTCTATTGAGCTGAAACA
51016331 GTAAGCT-TATATGAGCTGAAACA
1 GTAAGCTCTAT-TGAGCTGAAACA
* * * *
51016354 GTAAGCTCCAATGAGCTAAAAATA
1 GTAAGCTCTATTGAGCT-GAAACA
51016378 GTAAGCTCT
1 GTAAGCTCT
51016387 TACGAGCTGA
Statistics
Matches: 86, Mismatches: 11, Indels: 10
0.80 0.10 0.09
Matches are distributed among these distances:
21 3 0.03
22 16 0.19
23 36 0.42
24 13 0.15
25 12 0.14
26 6 0.07
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.26
Consensus pattern (23 bp):
GTAAGCTCTATTGAGCTGAAACA
Found at i:51016370 original size:45 final size:45
Alignment explanation
Indices: 51016280--51016370 Score: 123
Period size: 45 Copynumber: 2.0 Consensus size: 45
51016270 ATTGAGCTGA
* *
51016280 TGAACAATAAGCTCTATTGAGCTGAAACTGTAAGCTCTATCGAGC
1 TGAACAATAAGCTCTATTGAGCTGAAACAGTAAGCTCAATCGAGC
*
51016325 TGAACAGTAAGCT-TATATGAGCTGAAACAGTAAGCTCCAAT-GAGC
1 TGAACAATAAGCTCTAT-TGAGCTGAAACAGTAAGCT-CAATCGAGC
51016370 T
1 T
51016371 AAAAATAGTA
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
44 3 0.07
45 35 0.85
46 3 0.07
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (45 bp):
TGAACAATAAGCTCTATTGAGCTGAAACAGTAAGCTCAATCGAGC
Found at i:51021584 original size:29 final size:28
Alignment explanation
Indices: 51021517--51021612 Score: 120
Period size: 29 Copynumber: 3.4 Consensus size: 28
51021507 AAGTCTACAT
* * *
51021517 ACATGCATATGGCCCACTAGACCCAATC
1 ACATTCATATGGCCCATTAGACCAAATC
* *
51021545 TCATTCATATGGCCCATTAGGCCGAAATC
1 ACATTCATATGGCCCATTAGACC-AAATC
*
51021574 ACATTCGTATGGCCCATTAGACCCAAATC
1 ACATTCATATGGCCCATTAGA-CCAAATC
51021603 ACATTCATAT
1 ACATTCATAT
51021613 ACATGCTTTC
Statistics
Matches: 57, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
28 19 0.33
29 36 0.63
30 2 0.04
ACGTcount: A:0.31, C:0.30, G:0.14, T:0.25
Consensus pattern (28 bp):
ACATTCATATGGCCCATTAGACCAAATC
Found at i:51021692 original size:17 final size:18
Alignment explanation
Indices: 51021670--51021704 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
51021660 TGCCTATTAT
51021670 GGGCCCA-ATAGCCCATC
1 GGGCCCACATAGCCCATC
*
51021687 GGGCCCACGTAGCCCATC
1 GGGCCCACATAGCCCATC
51021705 CTGGCCCGGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.20, C:0.43, G:0.26, T:0.11
Consensus pattern (18 bp):
GGGCCCACATAGCCCATC
Found at i:51026074 original size:28 final size:29
Alignment explanation
Indices: 51026036--51026102 Score: 91
Period size: 28 Copynumber: 2.3 Consensus size: 29
51026026 CCCAAACAAT
* *
51026036 ACATGCATATGGCCCACTAGGCC-CAATC
1 ACATTCATATGGCCCACTAGGCCGAAATC
* *
51026064 TCATTCATATGGCCCATTAGGCCGAAATC
1 ACATTCATATGGCCCACTAGGCCGAAATC
51026093 ACATTCATAT
1 ACATTCATAT
51026103 ACATGCTTTC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
28 20 0.61
29 13 0.39
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.25
Consensus pattern (29 bp):
ACATTCATATGGCCCACTAGGCCGAAATC
Found at i:51026980 original size:44 final size:44
Alignment explanation
Indices: 51026917--51027000 Score: 141
Period size: 44 Copynumber: 1.9 Consensus size: 44
51026907 TCGACACAAA
51026917 GAAAAGTAGAAATCGTTTAAAACCAGAGGTGAATAAAAAATGAG
1 GAAAAGTAGAAATCGTTTAAAACCAGAGGTGAATAAAAAATGAG
* * *
51026961 GAAAATTAGAAATCGTTTAAAACCAGATGTGAATCAAAAA
1 GAAAAGTAGAAATCGTTTAAAACCAGAGGTGAATAAAAAA
51027001 GAAAACTTTG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.52, C:0.08, G:0.19, T:0.20
Consensus pattern (44 bp):
GAAAAGTAGAAATCGTTTAAAACCAGAGGTGAATAAAAAATGAG
Found at i:51029712 original size:38 final size:38
Alignment explanation
Indices: 51029669--51029744 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
51029659 TTCATCCTTT
51029669 TTCATTTCTTTTGGCCAAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCAAAAATTCTAAGGAAGGAGGAA
*
51029707 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCAAAAATTCTAAGGAAGGAGGAA
51029745 GGAGTTCTTG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.33, C:0.13, G:0.22, T:0.32
Consensus pattern (38 bp):
TTCATTTCTTTTGGCCAAAAATTCTAAGGAAGGAGGAA
Found at i:51037106 original size:38 final size:38
Alignment explanation
Indices: 51037063--51037138 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
51037053 TTCATCCTTT
51037063 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
51037101 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
51037139 GGAGTTCTTG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.32
Consensus pattern (38 bp):
TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
Found at i:51038427 original size:40 final size:40
Alignment explanation
Indices: 51038326--51038466 Score: 176
Period size: 40 Copynumber: 3.5 Consensus size: 40
51038316 TACTCGAATG
*
51038326 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
51038367 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * * *
51038407 ATATCCGGGCTACGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
51038447 ATATCCGGGTTAAGACCCGA
1 ATATCCGGGCTAAGTCCCGA
51038467 TGGCCTTGTG
Statistics
Matches: 86, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
39 1 0.01
40 56 0.65
41 28 0.33
42 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:51041426 original size:49 final size:48
Alignment explanation
Indices: 51041371--51041491 Score: 152
Period size: 49 Copynumber: 2.5 Consensus size: 48
51041361 TGTGATCCCA
*
51041371 TGTAAGACCATATCTGGGATATGGCATTGGCATCAACATGTGTGGTCCG
1 TGTAAGACCATATCTGGGATATGGCATTGGCATCAACATGTGTGAT-CG
* * * * * *
51041420 TGTAAGACCATGTTTGGGACATGGCATTGGCATCGATATGTGTTATCG
1 TGTAAGACCATATCTGGGATATGGCATTGGCATCAACATGTGTGATCG
* *
51041468 TGCAAGACCATATCTAGGATATGG
1 TGTAAGACCATATCTGGGATATGG
51041492 AGTTGATATG
Statistics
Matches: 60, Mismatches: 12, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
48 21 0.35
49 39 0.65
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (48 bp):
TGTAAGACCATATCTGGGATATGGCATTGGCATCAACATGTGTGATCG
Found at i:51041585 original size:48 final size:46
Alignment explanation
Indices: 51041498--51041613 Score: 128
Period size: 48 Copynumber: 2.5 Consensus size: 46
51041488 ATGGAGTTGA
* * *
51041498 TATGAGATCCT-GTATAAGACCATGTTTAGGACATGGCATCAGCATCAT
1 TATGAGA-CCTCGTATAAGACCACGTTTAGGACATAGCATCA-CATC-G
* *
51041546 TATGAGACCTCGTATAAGACCACGTTTGGGACCTAGCATCACATCG
1 TATGAGACCTCGTATAAGACCACGTTTAGGACATAGCATCACATCG
*
51041592 TATGAGGTCC-CGTATAAGACCA
1 TATGA-GACCTCGTATAAGACCA
51041614 TATATGGGAT
Statistics
Matches: 60, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
46 17 0.28
47 10 0.17
48 33 0.55
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (46 bp):
TATGAGACCTCGTATAAGACCACGTTTAGGACATAGCATCACATCG
Found at i:51041659 original size:94 final size:94
Alignment explanation
Indices: 51041498--51041671 Score: 208
Period size: 94 Copynumber: 1.9 Consensus size: 94
51041488 ATGGAGTTGA
* * * * *
51041498 TATGAGATCCTGTATAAGACCATGTTTAGGACATGGCATCAGCATCATTATGAGACCTCGTATAA
1 TATGAGATCCCGTATAAGACCATATATAGGACATGGCATCAGCATCAGTATGAGACCTCATATAA
*
51041563 GACCACGTTTGGGACCTAGCATCACATCG
66 GACCACGTCTGGGACCTAGCATCACATCG
* * * * *
51041592 TATGAGGTCCCGTATAAGACCATATATGGGATATGGCATCGGCATCGAGT-TGAGATCC-CATGT
1 TATGAGATCCCGTATAAGACCATATATAGGACATGGCATCAGCATC-AGTATGAGA-CCTCATAT
*
51041655 AAGACCATGTCTGGGAC
64 AAGACCACGTCTGGGAC
51041672 ATGGCATTGG
Statistics
Matches: 66, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
94 62 0.94
95 4 0.06
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (94 bp):
TATGAGATCCCGTATAAGACCATATATAGGACATGGCATCAGCATCAGTATGAGACCTCATATAA
GACCACGTCTGGGACCTAGCATCACATCG
Found at i:51041670 original size:48 final size:48
Alignment explanation
Indices: 51041606--51041711 Score: 126
Period size: 48 Copynumber: 2.2 Consensus size: 48
51041596 AGGTCCCGTA
* *
51041606 TAAGACCATATATGGGATATGGCATCGGCATCGAGT-TGAGATC-CCATG
1 TAAGACCATATATGGGACATGGCATCGGCATC-AATATGAGA-CACCATG
* * * *
51041654 TAAGACCATGTCTGGGACATGGCATTGGCATCAATATGAGACATCATG
1 TAAGACCATATATGGGACATGGCATCGGCATCAATATGAGACACCATG
51041702 TAAGACCATA
1 TAAGACCATA
51041712 ACTGGGCTAT
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
47 3 0.06
48 46 0.94
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.25
Consensus pattern (48 bp):
TAAGACCATATATGGGACATGGCATCGGCATCAATATGAGACACCATG
Found at i:51043489 original size:42 final size:42
Alignment explanation
Indices: 51043364--51043489 Score: 102
Period size: 42 Copynumber: 3.0 Consensus size: 42
51043354 AGGATTCCGT
** *
51043364 TATCTGATTTCATGTAAGACCAC-ATCTGGGAC-GTTGGCATCA
1 TATCTGATTTTGTGTAAGACC-CTGTCTGGGACAG-TGGCATCA
*
51043406 -ACTTCTG-TTTTACGTGTAAGACCATG-CTTGGGACA-TCGGCATCA
1 TA--TCTGATTTT--GTGTAAGACCCTGTC-TGGGACAGT-GGCATCA
51043450 TATCTGATTTTGTGTAAGACCCTGTCTGGGACAGTGGCAT
1 TATCTGATTTTGTGTAAGACCCTGTCTGGGACAGTGGCAT
51043490 TGATGTTTGA
Statistics
Matches: 67, Mismatches: 5, Indels: 24
0.70 0.05 0.25
Matches are distributed among these distances:
41 1 0.01
42 27 0.40
43 12 0.18
44 26 0.39
45 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.33
Consensus pattern (42 bp):
TATCTGATTTTGTGTAAGACCCTGTCTGGGACAGTGGCATCA
Found at i:51052631 original size:21 final size:20
Alignment explanation
Indices: 51052592--51052631 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
51052582 TGGTCCGTAA
*
51052592 GCCCATTGGGCCCAGTTTTG
1 GCCCATTGGGCCCACTTTTG
*
51052612 GCCCATTGAGGCCCTCTTTT
1 GCCCATTG-GGCCCACTTTT
51052632 TCCAAAGTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.10, C:0.33, G:0.25, T:0.33
Consensus pattern (20 bp):
GCCCATTGGGCCCACTTTTG
Found at i:51059815 original size:46 final size:46
Alignment explanation
Indices: 51059748--51059922 Score: 341
Period size: 46 Copynumber: 3.8 Consensus size: 46
51059738 TGTTACCCGC
51059748 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
51059794 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
51059840 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
51059886 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
51059923 TGCCCAAATA
Statistics
Matches: 127, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 127 1.00
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:51062357 original size:30 final size:30
Alignment explanation
Indices: 51062313--51062401 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
51062303 CAAAGATAAT
*
51062313 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
51062342 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
** *
51062372 AAGAAATCTAGG-ATAAAGAAACCCAAGATA
1 AAGAAA-CCCGGAATAAAGAAATCCAAGATA
51062402 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 36 0.72
31 5 0.10
ACGTcount: A:0.57, C:0.15, G:0.17, T:0.11
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:51062378 original size:15 final size:15
Alignment explanation
Indices: 51062313--51062392 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
51062303 CAAAGATAAT
*
51062313 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
51062327 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* * *
51062342 GAGAAACCCGGAATA
1 AAGAAATCCAGAATA
51062357 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
51062372 AAGAAATCTAGGATA
1 AAGAAATCCAGAATA
51062387 AAGAAA
1 AAGAAA
51062393 CCCAAGATAC
Statistics
Matches: 54, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
14 9 0.17
15 44 0.81
16 1 0.02
ACGTcount: A:0.59, C:0.12, G:0.17, T:0.11
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:51062401 original size:15 final size:15
Alignment explanation
Indices: 51062324--51062401 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
51062314 AGAAAACCGA
51062324 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
51062339 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
51062353 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
51062368 AATAAAGAAATCTAGG
1 -ATAAAGAAATCCAAG
*
51062384 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
51062399 ATA
1 ATA
51062402 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.56, C:0.14, G:0.17, T:0.13
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:51065375 original size:46 final size:46
Alignment explanation
Indices: 51065308--51065436 Score: 258
Period size: 46 Copynumber: 2.8 Consensus size: 46
51065298 TGTTACCCGC
51065308 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
51065354 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
51065400 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
51065437 TGCCCAAATA
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 83 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:51075072 original size:7 final size:7
Alignment explanation
Indices: 51075055--51075083 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
51075045 GGTCGAAACC
51075055 ATCTC-T
1 ATCTCAT
51075061 ATCTCAT
1 ATCTCAT
51075068 ATCTCAT
1 ATCTCAT
51075075 ATCTCAT
1 ATCTCAT
51075082 AT
1 AT
51075084 AGATGCTCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 5 0.23
7 17 0.77
ACGTcount: A:0.28, C:0.28, G:0.00, T:0.45
Consensus pattern (7 bp):
ATCTCAT
Found at i:51081485 original size:46 final size:46
Alignment explanation
Indices: 51081418--51081745 Score: 336
Period size: 46 Copynumber: 7.0 Consensus size: 46
51081408 AGTGTGCTCT
*
51081418 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
51081464 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
51081510 TTGATATGAAATGTGTATGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * ** * *
51081556 GTGACATGAAAAGAATAGGACCATGGTTGAAAGATACCATGGAAAC
1 CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
51081602 ATGACA-GAAAATGAATGAGTAAGACCATAGTTGAAAGACACTATGGCAAC
1 CTGACATG-AAATG--T--GTAAGACCATGGTTGAAAGATACCATGGCAAC
* * ** *
51081652 GTGACATGAAAAGAATAAGACCATGATTGAAAGATACCATGGCAAC
1 CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
51081698 GTGACA-GAAAATGAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGACATG-AAATG--T--GTAAGACCATGGTTGAAAGATACCATGGCA
51081746 TCATGTCAAA
Statistics
Matches: 238, Mismatches: 33, Indels: 18
0.82 0.11 0.06
Matches are distributed among these distances:
45 2 0.01
46 175 0.74
50 60 0.25
51 1 0.00
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (46 bp):
CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:51081578 original size:92 final size:92
Alignment explanation
Indices: 51081419--51081697 Score: 380
Period size: 92 Copynumber: 3.0 Consensus size: 92
51081409 GTGTGCTCTC
* * * **
51081419 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGA
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGA
*
51081484 CCATGGTTGAAAGATACCATGGCAACT
66 CCATGGTTGAAAGATACCATGGCAACA
* *
51081511 TGATATGAAATGTGTATGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAGGA
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGA
*
51081576 CCATGGTTGAAAGATACCATGGAAACA
66 CCATGGTTGAAAGATACCATGGCAACA
* * * *
51081603 TGACA-GAAAATGAATGAGTAAGACCATAGTTGAAAGACACTATGGCAACGTGACATGAAAAGAA
1 TGATATG-AAATG--T--GTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
*
51081667 TAAGACCATGATTGAAAGATACCATGGCAAC
61 TAAGACCATGGTTGAAAGATACCATGGCAAC
51081698 GTGACAGAAA
Statistics
Matches: 165, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
91 1 0.01
92 92 0.56
94 1 0.01
96 71 0.43
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.22
Consensus pattern (92 bp):
TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGA
CCATGGTTGAAAGATACCATGGCAACA
Found at i:51081658 original size:96 final size:96
Alignment explanation
Indices: 51081427--51081745 Score: 423
Period size: 96 Copynumber: 3.4 Consensus size: 96
51081417 TCTGATATGA
* * * * * * **
51081427 AATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTT
1 AATGAGTAAGACCATAGTTGAAAGACACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTT
* *
51081492 GAAAGATACCATGGCAACTTGATATG-AAATG
66 GAAAGATACCATGGCAACATGACA-GAAAATG
* * * *
51081523 --T--GTATGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAGGACCATGGTT
1 AATGAGTAAGACCATAGTTGAAAGACACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTT
*
51081584 GAAAGATACCATGGAAACATGACAGAAAATG
66 GAAAGATACCATGGCAACATGACAGAAAATG
* *
51081615 AATGAGTAAGACCATAGTTGAAAGACACTATGGCAACGTGACATGAAAAGAATAAGACCATGATT
1 AATGAGTAAGACCATAGTTGAAAGACACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTT
*
51081680 GAAAGATACCATGGCAACGTGACAGAAAATG
66 GAAAGATACCATGGCAACATGACAGAAAATG
*
51081711 AATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 AATGAGTAAGACCATAGTTGAAAGACACCATGGCA
51081746 TCATGTCAAA
Statistics
Matches: 200, Mismatches: 18, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
91 1 0.00
92 79 0.40
94 2 0.01
96 118 0.59
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (96 bp):
AATGAGTAAGACCATAGTTGAAAGACACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTT
GAAAGATACCATGGCAACATGACAGAAAATG
Found at i:51081675 original size:142 final size:138
Alignment explanation
Indices: 51081436--51081713 Score: 371
Period size: 142 Copynumber: 2.0 Consensus size: 138
51081426 AAATGTGTAA
* * * * *
51081436 GACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATAC
1 GACCATGGTTGAAAGATACCATGGAAACATGACATGAAATGTGTAAGACCATAGTTGAAAGACAC
* * * ** * *
51081501 CATGGCAACTTGATATGAAATGTGTATGACCATGGTTGAAAGATACCATGGCAACGTGACATGAA
66 CATGGCAACGTGACATGAAAAGAATAAGACCATGATTGAAAGATACCATGGCAACGTGACA-GAA
51081566 AA-GAATAG
130 AATGAATAG
51081574 GACCATGGTTGAAAGATACCATGGAAACATGACA-GAAAATGAATGAGTAAGACCATAGTTGAAA
1 GACCATGGTTGAAAGATACCATGGAAACATGACATG-AAATG--T--GTAAGACCATAGTTGAAA
*
51081638 GACACTATGGCAACGTGACATGAAAAGAATAAGACCATGATTGAAAGATACCATGGCAACGTGAC
61 GACACCATGGCAACGTGACATGAAAAGAATAAGACCATGATTGAAAGATACCATGGCAACGTGAC
51081703 AGAAAATGAAT
126 AGAAAATGAAT
51081714 GAGTAAGACC
Statistics
Matches: 121, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
137 1 0.01
138 36 0.30
140 1 0.01
141 5 0.04
142 78 0.64
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (138 bp):
GACCATGGTTGAAAGATACCATGGAAACATGACATGAAATGTGTAAGACCATAGTTGAAAGACAC
CATGGCAACGTGACATGAAAAGAATAAGACCATGATTGAAAGATACCATGGCAACGTGACAGAAA
ATGAATAG
Found at i:51082938 original size:10 final size:10
Alignment explanation
Indices: 51082923--51082947 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
51082913 ATTGGTCGTG
51082923 TAGAAATAAT
1 TAGAAATAAT
51082933 TAGAAATAAT
1 TAGAAATAAT
51082943 TAGAA
1 TAGAA
51082948 CTTGTAACAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.60, C:0.00, G:0.12, T:0.28
Consensus pattern (10 bp):
TAGAAATAAT
Found at i:51085851 original size:40 final size:40
Alignment explanation
Indices: 51085621--51085844 Score: 308
Period size: 40 Copynumber: 5.6 Consensus size: 40
51085611 TGGATGATAA
* ** * * **
51085621 CCGGGCTAAGTCCCGAAGGCATCTGCACTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
51085661 CCGGGC-AAGTTCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
51085700 CCGAGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
51085740 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
51085780 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
*
51085820 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
51085845 ACCGAGTAGC
Statistics
Matches: 165, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 30 0.18
40 133 0.81
41 2 0.01
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:51091117 original size:21 final size:21
Alignment explanation
Indices: 51091078--51091117 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
51091068 AACAATGCTA
*
51091078 TAATTTAGAATAAGGCTACTG
1 TAATTTAGAATAAGACTACTG
* *
51091099 TAATTTAGAGTCAGACTAC
1 TAATTTAGAATAAGACTAC
51091118 GTCTCTCTAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33
Consensus pattern (21 bp):
TAATTTAGAATAAGACTACTG
Found at i:51097878 original size:27 final size:27
Alignment explanation
Indices: 51097848--51098016 Score: 173
Period size: 27 Copynumber: 6.3 Consensus size: 27
51097838 TTTAGTTTAC
51097848 TAAAATTACCGAAATACCCTC-AGCTTG
1 TAAAATTACCGAAATACCCTCGA-CTTG
* *
51097875 TAAAATTACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCCTCGACTTG
** * *
51097902 TAAAATTACTAAAATACCTTCAACTTG
1 TAAAATTACCGAAATACCCTCGACTTG
* * *
51097929 TAAAATTACC-AAAGTACCCCCGATTTA
1 TAAAATTACCGAAA-TACCCTCGACTTG
* * * *
51097956 TAAAATTATCAAAATATCGTCGA-TTG
1 TAAAATTACCGAAATACCCTCGACTTG
*
51097982 TAAAATTACTGAAATACCCTCGACTTG
1 TAAAATTACCGAAATACCCTCGACTTG
51098009 TAAAATTA
1 TAAAATTA
51098017 TCAAAGTACC
Statistics
Matches: 116, Mismatches: 22, Indels: 8
0.79 0.15 0.05
Matches are distributed among these distances:
26 23 0.20
27 89 0.77
28 4 0.03
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
TAAAATTACCGAAATACCCTCGACTTG
Found at i:51098022 original size:80 final size:81
Alignment explanation
Indices: 51097894--51098046 Score: 245
Period size: 80 Copynumber: 1.9 Consensus size: 81
51097884 TGAAATACCC
*
51097894 TCGATTTGTAAAATTACTAAAATACCTTCAACTTGTAAAATTACCAAAGTACCCCCGATTTATAA
1 TCGATTTGTAAAATTACTAAAATACCCTCAACTTGTAAAATTACCAAAGTACCCCCGATTTATAA
51097959 AATTATCAAAATATCG
66 AATTATCAAAATATCG
* * * *
51097975 TCGA-TTGTAAAATTACTGAAATACCCTCGACTTGTAAAATTATCAAAGTACCCCCGATTTATAG
1 TCGATTTGTAAAATTACTAAAATACCCTCAACTTGTAAAATTACCAAAGTACCCCCGATTTATAA
*
51098039 GATTATCA
66 AATTATCA
51098047 TTTTACCCTC
Statistics
Matches: 66, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
80 62 0.94
81 4 0.06
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (81 bp):
TCGATTTGTAAAATTACTAAAATACCCTCAACTTGTAAAATTACCAAAGTACCCCCGATTTATAA
AATTATCAAAATATCG
Found at i:51098033 original size:53 final size:53
Alignment explanation
Indices: 51097848--51098033 Score: 205
Period size: 54 Copynumber: 3.5 Consensus size: 53
51097838 TTTAGTTTAC
* * *
51097848 TAAAATTACCGAAATACCCTCAGCTTGTAAAATTACTGAAATACCCTCGATTTG
1 TAAAATTATCAAAATACCCTC-GATTGTAAAATTACTGAAATACCCTCGATTTG
* * * * *
51097902 TAAAATTA-CTAAAATACCTTCAACTTGTAAAATTAC-CAAAGTACCCCCGATTTA
1 TAAAATTATC-AAAATACCCTCGA-TTGTAAAATTACTGAAA-TACCCTCGATTTG
* * *
51097956 TAAAATTATCAAAATATCGTCGATTGTAAAATTACTGAAATACCCTCGACTTG
1 TAAAATTATCAAAATACCCTCGATTGTAAAATTACTGAAATACCCTCGATTTG
* *
51098009 TAAAATTATCAAAGTACCCCCGATT
1 TAAAATTATCAAAATACCCTCGATT
51098034 TATAGGATTA
Statistics
Matches: 109, Mismatches: 18, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
53 47 0.43
54 61 0.56
55 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (53 bp):
TAAAATTATCAAAATACCCTCGATTGTAAAATTACTGAAATACCCTCGATTTG
Found at i:51098053 original size:27 final size:27
Alignment explanation
Indices: 51098023--51098206 Score: 260
Period size: 27 Copynumber: 6.8 Consensus size: 27
51098013 ATTATCAAAG
* * *
51098023 TACCCCCGATTTATAGGATTATCATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
51098050 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
51098077 TACCTTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
51098104 TACCCACGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
51098131 TACCCTCGATTTATAGAATTATCATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
51098158 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
51098185 TACCCTCAATTTACAAAATTAC
1 TACCCTCGATTTATAGAATTAC
51098207 TAAAATACCC
Statistics
Matches: 140, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 140 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTT
Found at i:51098059 original size:80 final size:80
Alignment explanation
Indices: 51097886--51098060 Score: 242
Period size: 80 Copynumber: 2.2 Consensus size: 80
51097876 AAAATTACTG
*
51097886 AAATACCCTCGATTTGTAAAATTACTAAAATACCTTCAACTTGTAAAATTACCAAAGTACCCCCG
1 AAATACCCTCGA-TTGTAAAATTACTAAAATACCCTCAACTTGTAAAATTACCAAAGTACCCCCG
51097951 ATTTATAAAATTATCA
65 ATTTATAAAATTATCA
* * * * *
51097967 AAATATCGTCGATTGTAAAATTACTGAAATACCCTCGACTTGTAAAATTATCAAAGTACCCCCGA
1 AAATACCCTCGATTGTAAAATTACTAAAATACCCTCAACTTGTAAAATTACCAAAGTACCCCCGA
**
51098032 TTTATAGGATTATCA
66 TTTATAAAATTATCA
***
51098047 TTTTACCCTCGATT
1 AAATACCCTCGATT
51098061 TACAGAATTA
Statistics
Matches: 81, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
80 71 0.88
81 10 0.12
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.33
Consensus pattern (80 bp):
AAATACCCTCGATTGTAAAATTACTAAAATACCCTCAACTTGTAAAATTACCAAAGTACCCCCGA
TTTATAAAATTATCA
Found at i:51098215 original size:27 final size:27
Alignment explanation
Indices: 51098185--51098324 Score: 124
Period size: 27 Copynumber: 5.2 Consensus size: 27
51098175 ATTACCGTTT
** *
51098185 TACCCTCAATTTACAAAATTACTAAAA
1 TACCCTCGGTTTATAAAATTACTAAAA
* * * *
51098212 TACCCTTGGTTTACAAAAGTACCAAAA
1 TACCCTCGGTTTATAAAATTACTAAAA
* * *
51098239 TACCCT-TGATCAGTAAAATTACTAAAA
1 TACCCTCGGTTTA-TAAAATTACTAAAA
*
51098266 TACCC-CTGGTTTGTAAAATTACTAAAA
1 TACCCTC-GGTTTATAAAATTACTAAAA
*
51098293 TACCCAT-GGTTTGTAAAATTACTAAAA
1 TACCC-TCGGTTTATAAAATTACTAAAA
51098320 TACCC
1 TACCC
51098325 CTGTAGGGTA
Statistics
Matches: 93, Mismatches: 15, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
26 3 0.03
27 88 0.95
28 2 0.02
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
TACCCTCGGTTTATAAAATTACTAAAA
Found at i:51098216 original size:81 final size:81
Alignment explanation
Indices: 51098050--51098235 Score: 237
Period size: 81 Copynumber: 2.3 Consensus size: 81
51098040 ATTATCATTT
* *
51098050 TACCCTCGATTTACAGAATTACCATTTTACCTTCGATTTATAGAATTACCATTTTACCCACGATT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCACAATT
* ***
51098115 TACAGAATTACCATTT
66 TACAAAATTACCAAAA
* * * *
51098131 TACCCTCGATTTATAGAATTATCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAATT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCACAATT
*
51098196 TACAAAATTACTAAAA
66 TACAAAATTACCAAAA
* * * *
51098212 TACCCTTGGTTTACAAAAGTACCA
1 TACCCTCGATTTACAGAATTACCA
51098236 AAATACCCTT
Statistics
Matches: 88, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 88 1.00
ACGTcount: A:0.33, C:0.23, G:0.08, T:0.37
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCACAATT
TACAAAATTACCAAAA
Found at i:51098243 original size:54 final size:53
Alignment explanation
Indices: 51098193--51098327 Score: 155
Period size: 54 Copynumber: 2.5 Consensus size: 53
51098183 TTTACCCTCA
* *
51098193 ATTTACAAAATTACTAAAATACCCTTGGTTTACAAAAGTACCAAAATACCCTTG
1 ATTTATAAAATTACTAAAATACCCCTGGTTTACAAAAGTACCAAAATACCC-TG
* ** * *
51098247 A-TCAGTAAAATTACTAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCATG
1 ATTTA-TAAAATTACTAAAATACCCCTGGTTTACAAAAGTACCAAAATACCC-TG
* *
51098301 GTTTGTAAAATTACTAAAATACCCCTG
1 ATTTATAAAATTACTAAAATACCCCTG
51098328 TAGGGTAGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
53 2 0.03
54 65 0.96
55 1 0.01
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.30
Consensus pattern (53 bp):
ATTTATAAAATTACTAAAATACCCCTGGTTTACAAAAGTACCAAAATACCCTG
Found at i:51098339 original size:27 final size:27
Alignment explanation
Indices: 51098255--51098476 Score: 205
Period size: 27 Copynumber: 8.2 Consensus size: 27
51098245 TGATCAGTAA
** *
51098255 AATTACTAAAATACCCCTGGT-TTGTAA
1 AATTACTAAAATACCCCT-GTAGGGTAG
* ** *
51098282 AATTACTAAAATACCCATGGT-TTGTAA
1 AATTACTAAAATACCCCT-GTAGGGTAG
51098309 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACTAAAATACCCCTGTAGGGTAG
*
51098336 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTAAAATACCCCTGTAGGGTAG
* *
51098363 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACTAAAATACCCCTGTAGGGTAG
** **
51098390 AATTACCGAAATACCTTTGTAGGGTAG
1 AATTACTAAAATACCCCTGTAGGGTAG
* * *
51098417 AAATACCAAAATAACCCTGTAGGGTAG
1 AATTACTAAAATACCCCTGTAGGGTAG
** * * * *
51098444 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACTAAAATACCCCTGTAGGGTAG
51098471 AATTAC
1 AATTAC
51098477 AATTTTGCCC
Statistics
Matches: 171, Mismatches: 23, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
26 2 0.01
27 169 0.99
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (27 bp):
AATTACTAAAATACCCCTGTAGGGTAG
Found at i:51098340 original size:54 final size:54
Alignment explanation
Indices: 51098251--51098476 Score: 233
Period size: 54 Copynumber: 4.2 Consensus size: 54
51098241 CCCTTGATCA
** * * **
51098251 GTAAAATTACTAAAATACCCCTGGT-TTGTAAAATTACTAAAATACCCATGGT-TT
1 GTAAAATTACTAAAATACCCCT-GTAGGGTAGAATTACTGAAATACCCAT-GTAGG
*
51098305 GTAAAATTACTAAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGG
1 GTAAAATTACTAAAATACCCCTGTAGGGTAGAATTACTGAAATACCCATGTAGG
* * * * **
51098359 GTAGAATTACTGAAATACCCCTATAGGGTAGAATTACCGAAATACCTTTGTAGG
1 GTAAAATTACTAAAATACCCCTGTAGGGTAGAATTACTGAAATACCCATGTAGG
* * * * * *
51098413 GTAGAAA-TACCAAAATAACCCTGTAGGGTAGAATTACCGAGATACCCTTGTGGG
1 GTA-AAATTACTAAAATACCCCTGTAGGGTAGAATTACTGAAATACCCATGTAGG
51098467 GTAAAATTAC
1 GTAAAATTAC
51098477 AATTTTGCCC
Statistics
Matches: 147, Mismatches: 21, Indels: 8
0.84 0.12 0.05
Matches are distributed among these distances:
53 7 0.05
54 138 0.94
55 2 0.01
ACGTcount: A:0.37, C:0.17, G:0.18, T:0.27
Consensus pattern (54 bp):
GTAAAATTACTAAAATACCCCTGTAGGGTAGAATTACTGAAATACCCATGTAGG
Found at i:51098367 original size:81 final size:81
Alignment explanation
Indices: 51098201--51098449 Score: 240
Period size: 81 Copynumber: 3.1 Consensus size: 81
51098191 CAATTTACAA
* ** * *
51098201 AATTACTAAAATACCCTTGGTTTACAAAAGTACCAAAATACCCTTGATCA--GTAAAATTACTAA
1 AATTACTAAAATACCCATGGTTTGTAAAATTACCAAAATACCCTTG-T-AGGGTAGAATTACTAA
** *
51098264 AATACCCCTGGT-TTGTAA
64 AATACCCCT-GTAGGGTAG
* * *
51098282 AATTACTAAAATACCCATGGTTTGTAAAATTACTAAAATACCCCTGTAGGGTAGAATTACTGAAA
1 AATTACTAAAATACCCATGGTTTGTAAAATTACCAAAATACCCTTGTAGGGTAGAATTACTAAAA
51098347 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
* * * * * *
51098363 AATTACTGAAATACCCCTATAGG---GTAGAATTACCGAAATACCTTTGTAGGGTAGAAATACCA
1 AATTACTAAAATA-CCC-AT-GGTTTGTAAAATTACCAAAATACCCTTGTAGGGTAGAATTACTA
*
51098425 AAATAACCCTGTAGGGTAG
63 AAATACCCCTGTAGGGTAG
51098444 AATTAC
1 AATTAC
51098450 CGAGATACCC
Statistics
Matches: 141, Mismatches: 21, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
79 1 0.01
80 3 0.02
81 130 0.92
82 3 0.02
83 2 0.01
84 2 0.01
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.28
Consensus pattern (81 bp):
AATTACTAAAATACCCATGGTTTGTAAAATTACCAAAATACCCTTGTAGGGTAGAATTACTAAAA
TACCCCTGTAGGGTAG
Found at i:51098487 original size:27 final size:27
Alignment explanation
Indices: 51098457--51098520 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 27
51098447 TACCGAGATA
*
51098457 CCCTTGTGGGGTAAAATTACAATTTTG
1 CCCTTGTGGGGTAAAATGACAATTTTG
* * **
51098484 CCCTTAG-GGTGTTAAATGACTGTTTTG
1 CCCTT-GTGGGGTAAAATGACAATTTTG
51098511 CCCTTGTGGG
1 CCCTTGTGGG
51098521 CAAGTGACTG
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
26 1 0.03
27 27 0.93
28 1 0.03
ACGTcount: A:0.19, C:0.17, G:0.27, T:0.38
Consensus pattern (27 bp):
CCCTTGTGGGGTAAAATGACAATTTTG
Found at i:51098747 original size:24 final size:25
Alignment explanation
Indices: 51098682--51098750 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
51098672 AGGAAGTGCT
*
51098682 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
51098707 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
51098732 AAAAGGGCTTTG-CCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
51098751 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
24 7 0.17
25 35 0.83
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:51101004 original size:56 final size:56
Alignment explanation
Indices: 51100943--51101095 Score: 207
Period size: 56 Copynumber: 2.7 Consensus size: 56
51100933 TCACATATCA
* * * * *
51100943 TCTTACTCGTACATATATATTGGAGTCATATATTGATGCCAATGTATTAAACGTGG
1 TCTTACTCGCACATATATATAGGAGTCACATATCGATGCCAACGTATTAAACGTGG
* * * *
51100999 TCTTACTTGCACACATATATCGGAGTCACATATCGATGCTAACGTATTAAACGTGG
1 TCTTACTCGCACATATATATAGGAGTCACATATCGATGCCAACGTATTAAACGTGG
* *
51101055 ACTTACTCGCACATATATATAGGAGTCGCATATCGATGCCA
1 TCTTACTCGCACATATATATAGGAGTCACATATCGATGCCA
51101096 CATACTTCCA
Statistics
Matches: 83, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
56 83 1.00
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.32
Consensus pattern (56 bp):
TCTTACTCGCACATATATATAGGAGTCACATATCGATGCCAACGTATTAAACGTGG
Found at i:51103079 original size:63 final size:66
Alignment explanation
Indices: 51103000--51103160 Score: 177
Period size: 67 Copynumber: 2.5 Consensus size: 66
51102990 AGACATTATG
* * * *
51103000 ATGTAGCTAGGTCGCATGGGT-ATACTA-TG-TGTACACCATGTAGATAAGAGAGCTACGGGATA
1 ATGTAGCTAGGTCGCATGGGTGATACTAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGATA
*
51103062 T
66 A
* * *
51103063 ATGTAGCTAGGTCGCATGTGTGGTTCTAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGATACTA-GTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
51103128 AA
65 AA
* * *
51103130 AT-TGGCTAGGTCACATGGGTGGTACTGAGTG
1 ATGTAGCTAGGTCGCATGGGTGATACT-AGTG
51103161 TTCACCATGT
Statistics
Matches: 81, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
63 20 0.25
64 4 0.05
66 25 0.31
67 32 0.40
ACGTcount: A:0.29, C:0.14, G:0.32, T:0.25
Consensus pattern (66 bp):
ATGTAGCTAGGTCGCATGGGTGATACTAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGATA
A
Found at i:51107880 original size:16 final size:16
Alignment explanation
Indices: 51107861--51107891 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
51107851 ATTGTTTTAT
51107861 TACAAAATTTCACTTC
1 TACAAAATTTCACTTC
*
51107877 TACATAATTTCACTT
1 TACAAAATTTCACTT
51107892 ACTCCATTCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACAAAATTTCACTTC
Found at i:51108230 original size:50 final size:50
Alignment explanation
Indices: 51108102--51108230 Score: 177
Period size: 50 Copynumber: 2.6 Consensus size: 50
51108092 CTGGTATGCA
* * * *
51108102 TAGTAGCCTGCACTTAGTACTACGCATGCGACCAATCAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATCAATCTGATACACG
* ** *
51108152 TAGAAGCCTGCACTTAGTACTACACACGTGACTTATCCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATCAATCTGATACACG
*
51108202 TAGTAGCCTACACTTAGTACTACACACGT
1 TAGTAGCCTGCACTTAGTACTACACACGT
51108231 TGATCGCGTG
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
50 69 1.00
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATCAATCTGATACACG
Found at i:51111292 original size:5 final size:5
Alignment explanation
Indices: 51111282--51111379 Score: 74
Period size: 6 Copynumber: 18.2 Consensus size: 5
51111272 TATGTCTTTC
* *
51111282 AAAAT AAAAT AATAAT AAAATT GAAAT GAAAAT AAAAAT CAAAAGA AAAAT
1 AAAAT AAAAT AA-AAT AAAA-T AAAAT -AAAAT -AAAAT -AAAA-T AAAAT
*
51111333 AAAAAT AAAAT -AAAG AAAAT AAAAAT AAGAAT -AAAT AAAAT AAAAT
1 -AAAAT AAAAT AAAAT AAAAT -AAAAT AA-AAT AAAAT AAAAT AAAAT
51111379 A
1 A
51111380 GGAGGATTCA
Statistics
Matches: 76, Mismatches: 8, Indels: 18
0.75 0.08 0.18
Matches are distributed among these distances:
4 6 0.08
5 31 0.41
6 39 0.51
ACGTcount: A:0.76, C:0.01, G:0.05, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:51111349 original size:21 final size:20
Alignment explanation
Indices: 51111287--51111377 Score: 96
Period size: 20 Copynumber: 4.5 Consensus size: 20
51111277 CTTTCAAAAT
*
51111287 AAAATAATAATAAAATTGAAATG
1 AAAATAAAAATAAAA-T-AAA-G
* *
51111310 AAAATAAAAATCAAA-AGA-
1 AAAATAAAAATAAAATAAAG
51111328 AAAATAAAAATAAAATAAAG
1 AAAATAAAAATAAAATAAAG
*
51111348 AAAATAAAAATAAGAATAAAT
1 AAAATAAAAATAA-AATAAAG
51111369 AAAATAAAA
1 AAAATAAAA
51111378 TAGGAGGATT
Statistics
Matches: 59, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
18 14 0.24
19 2 0.03
20 15 0.25
21 15 0.25
23 13 0.22
ACGTcount: A:0.76, C:0.01, G:0.05, T:0.18
Consensus pattern (20 bp):
AAAATAAAAATAAAATAAAG
Found at i:51111358 original size:26 final size:25
Alignment explanation
Indices: 51111305--51111371 Score: 73
Period size: 26 Copynumber: 2.7 Consensus size: 25
51111295 AATAAAATTG
* **
51111305 AAATGAAAATAAA-AATCAAAAGAA
1 AAATAAAAATAAATAAAGAAAAGAA
*
51111329 AAATAAAAATAAAATAAAGAAAATAA
1 AAATAAAAAT-AAATAAAGAAAAGAA
*
51111355 AAATAAGAATAAATAAA
1 AAATAAAAATAAATAAA
51111372 ATAAAATAGG
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
24 9 0.25
25 10 0.28
26 17 0.47
ACGTcount: A:0.78, C:0.01, G:0.06, T:0.15
Consensus pattern (25 bp):
AAATAAAAATAAATAAAGAAAAGAA
Found at i:51111363 original size:35 final size:37
Alignment explanation
Indices: 51111287--51111379 Score: 111
Period size: 35 Copynumber: 2.5 Consensus size: 37
51111277 CTTTCAAAAT
*
51111287 AAAATAATAATAAAATTGAAATGAAAATAAAAATCAAAAGA
1 AAAATAAAAATAAAA-T-AAATGAAAATAAAAAT--AAAGA
51111328 AAAATAAAAATAAAATAAA-GAAAATAAAAAT-AAGA
1 AAAATAAAAATAAAATAAATGAAAATAAAAATAAAGA
51111363 ATAAAT-AAAATAAAATA
1 A-AAATAAAAATAAAATA
51111380 GGAGGATTCA
Statistics
Matches: 50, Mismatches: 1, Indels: 8
0.85 0.02 0.14
Matches are distributed among these distances:
35 16 0.32
36 4 0.08
38 12 0.24
39 3 0.06
40 1 0.02
41 14 0.28
ACGTcount: A:0.75, C:0.01, G:0.05, T:0.18
Consensus pattern (37 bp):
AAAATAAAAATAAAATAAATGAAAATAAAAATAAAGA
Found at i:51113256 original size:40 final size:40
Alignment explanation
Indices: 51113196--51113406 Score: 230
Period size: 40 Copynumber: 5.3 Consensus size: 40
51113186 ATTTGAATGA
* *
51113196 TATCTGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
*
51113236 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
* * *
51113276 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * *
51113316 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * * * * *
51113356 TACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
51113396 TATCC-GGCTAA
1 TATCCGGGCTAA
51113407 ATTCTGAAGA
Statistics
Matches: 155, Mismatches: 13, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 7 0.05
40 145 0.94
41 3 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
Found at i:51114447 original size:28 final size:28
Alignment explanation
Indices: 51114415--51114470 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
51114405 ATTCCCCTTT
51114415 GAGTCTAGTTTCATTAGAAACAAACGGC
1 GAGTCTAGTTTCATTAGAAACAAACGGC
51114443 GAGTCTAGTTTCATTAGAAACAAACGGC
1 GAGTCTAGTTTCATTAGAAACAAACGGC
51114471 ATGAGTATGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (28 bp):
GAGTCTAGTTTCATTAGAAACAAACGGC
Found at i:51121425 original size:40 final size:40
Alignment explanation
Indices: 51121277--51121488 Score: 241
Period size: 40 Copynumber: 5.3 Consensus size: 40
51121267 CATTTGAATG
* * *
51121277 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* * * *
51121317 TTATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
*
51121357 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
*
51121397 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
* * * * ** *
51121437 ATACCCAGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
51121477 ATATCC-GGCTAA
1 ATATCCGGGCTAA
51121489 ATTCCAAAGA
Statistics
Matches: 155, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
39 7 0.05
40 145 0.94
41 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
Found at i:51124882 original size:27 final size:26
Alignment explanation
Indices: 51124823--51124936 Score: 113
Period size: 27 Copynumber: 4.2 Consensus size: 26
51124813 AGGAAGCGTC
*
51124823 CTGGTGGCTATGCCACAAATTATCTGATT
1 CTGGTGGCTCTGCCAC--ATTATCTG-TT
*
51124852 -TGGTGGCTCTACCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
*
51124878 CTGGTGGCTCTGCCACGATTATCTATAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* * *
51124906 CTAGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
51124932 CTGGT
1 CTGGT
51124937 AGCCATGCTG
Statistics
Matches: 72, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
26 9 0.12
27 34 0.47
28 29 0.40
ACGTcount: A:0.19, C:0.23, G:0.20, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:51132458 original size:47 final size:47
Alignment explanation
Indices: 51132406--51132954 Score: 875
Period size: 47 Copynumber: 11.6 Consensus size: 47
51132396 GATAATTGTG
* *
51132406 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
51132453 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
51132500 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
51132549 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
51132596 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG-
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
51132642 ATGTGAAAGTGTAATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG---TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
51132692 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
51132741 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
51132788 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
51132835 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
51132882 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
51132929 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
51132955 TCCCGAAGGG
Statistics
Matches: 471, Mismatches: 25, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
46 11 0.02
47 323 0.69
49 126 0.27
50 11 0.02
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:51132553 original size:143 final size:143
Alignment explanation
Indices: 51132406--51132954 Score: 919
Period size: 143 Copynumber: 3.9 Consensus size: 143
51132396 GATAATTGTG
*
51132406 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
51132471 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
66 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
51132536 GCCGATGTGATGA
131 GCCGATGTGATGA
*
51132549 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
51132614 GTGATAAGGCCGAATGGCCAATGTGATG-ATGTGAAAGTGTAATATATATGTGATAAGGCCTAAT
66 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGT-ATATATATGTGATAAGGCCTAAT
51132678 GGCCGATGTGATGA
130 GGCCGATGTGATGA
51132692 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * *
51132757 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAA
64 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
*
51132820 TAGCCGATGTGATGA
129 TGGCCGATGTGATGA
* *
51132835 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * * *
51132900 GTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
66 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
51132955 TCCCGAAGGG
Statistics
Matches: 383, Mismatches: 17, Indels: 14
0.93 0.04 0.03
Matches are distributed among these distances:
141 97 0.25
142 13 0.03
143 181 0.47
145 81 0.21
146 11 0.03
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (143 bp):
ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
GCCGATGTGATGA
Found at i:51135299 original size:50 final size:50
Alignment explanation
Indices: 51135242--51135478 Score: 251
Period size: 50 Copynumber: 4.7 Consensus size: 50
51135232 CGGGTACGCA
* * * *
51135242 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGGTACAGG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACAGG
* * * *
51135292 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATTTGATACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACAGG
* * * * ** * * *
51135342 TAATAGCCTACACTTACTACTACACACATGATCGAAACTATCGGGTAC-GCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCTAACAATCTGGTACAG-G
* ** **
51135393 TAGTAGCCTGCACTTAGTACTACACATGCAACCTAACAATCTGGTACAAT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACAGG
51135443 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
51135479 AATTGTCTTA
Statistics
Matches: 148, Mismatches: 36, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
50 114 0.77
51 34 0.23
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACAGG
Found at i:51135520 original size:151 final size:150
Alignment explanation
Indices: 51135214--51135522 Score: 424
Period size: 151 Copynumber: 2.0 Consensus size: 150
51135204 GGCATTTATC
* * *
51135214 ACACGTGATCAAAACTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATC
1 ACACATGATCAAAACTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCTAAC
* * * **
51135279 AATCCGGTACAGGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATTTGATACATGTA
66 AATCCGGTACAAGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATTTGAAACACATA
*
51135344 ATAGCCTACACTTACTACTA
131 ATAGCCTACACATACTACTA
*
51135364 CACACATGATCGAAACTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCTAA
1 -ACACATGATCAAAACTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCTAA
* * *
51135429 CAATCTGGTACAATTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-AATTGTCTTAAACA
65 CAATCCGGTACAAGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA-T-T-TGAAACA
* * *
51135493 CATAGTAGCCTGCACATAGTACT-
127 CATAATAGCCTACACATACTACTA
51135516 ACACATG
1 ACACATG
51135523 TGTTCTCACA
Statistics
Matches: 139, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
150 1 0.01
151 115 0.83
152 1 0.01
153 22 0.16
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (150 bp):
ACACATGATCAAAACTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCTAAC
AATCCGGTACAAGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATTTGAAACACATA
ATAGCCTACACATACTACTA
Found at i:51139583 original size:27 final size:26
Alignment explanation
Indices: 51139553--51139614 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
51139543 ATTTACTAAA
* *
51139553 ATACCCCTAAGTATAAAAATTACCATC
1 ATACCCCTAAGT-GAAAAATGACCATC
* * *
51139580 ATACCCCTAGGTGCAAAATGACCATT
1 ATACCCCTAAGTGAAAAATGACCATC
51139606 ATACCCCTA
1 ATACCCCTA
51139615 GGGTTAATTT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 19 0.63
27 11 0.37
ACGTcount: A:0.39, C:0.29, G:0.08, T:0.24
Consensus pattern (26 bp):
ATACCCCTAAGTGAAAAATGACCATC
Found at i:51139763 original size:28 final size:28
Alignment explanation
Indices: 51139719--51139800 Score: 107
Period size: 28 Copynumber: 3.0 Consensus size: 28
51139709 GGAGGAAGAG
*
51139719 TTCTGGTGGCTATGCCACAAATATCTGT
1 TTCTGGTGGCTACGCCACAAATATCTGT
*
51139747 TTTTGGTGGCTACGCCACAAATATCTG-
1 TTCTGGTGGCTACGCCACAAATATCTGT
*
51139774 TTCTGGTGGCT-CTGCCAC-ATTATCTGT
1 TTCTGGTGGCTAC-GCCACAAATATCTGT
51139801 ATCTAGTGAC
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 8 0.17
27 15 0.31
28 25 0.52
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.37
Consensus pattern (28 bp):
TTCTGGTGGCTACGCCACAAATATCTGT
Found at i:51141901 original size:28 final size:28
Alignment explanation
Indices: 51141861--51141917 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
51141851 AAGAAAGAAG
51141861 TCCAGAAGAATACATCATTCAAGCCCAC
1 TCCAGAAGAATACATCATTCAAGCCCAC
51141889 TCCAGAAGAATACATCATTCAAGCCCAC
1 TCCAGAAGAATACATCATTCAAGCCCAC
51141917 T
1 T
51141918 AGAACTAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.39, C:0.32, G:0.11, T:0.19
Consensus pattern (28 bp):
TCCAGAAGAATACATCATTCAAGCCCAC
Found at i:51145120 original size:16 final size:16
Alignment explanation
Indices: 51145101--51145132 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
51145091 AATTGTTTTA
51145101 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
51145117 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
51145133 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:51145401 original size:50 final size:49
Alignment explanation
Indices: 51145336--51145715 Score: 201
Period size: 50 Copynumber: 7.9 Consensus size: 49
51145326 AAGCCCTCTG
* * * * *
51145336 GTACGCATAGGAGCCTACAATTAGTACTACACATGCGACCTATCAATCTC
1 GTACACATAGTAGCCTACACTTAGTACTACACACGTGACCTATCAATC-C
* * * * *
51145386 GTACACATAGTAGCCTGCACTTAGTGCTACACACGTGACTTATCCATCG
1 GTACACATAGTAGCCTACACTTAGTACTACACACGTGACCTATCAATCC
* * ** * * **
51145435 GATACACGTAGTAGCCTACACTTAGTACTACACACGTAATCGAAACTATTGG
1 G-TACACATAGTAGCCTACACTTAGTACTACACACGTGA-CCTATC-AATCC
** * * **
51145487 GTATGCATAGTATCCTACACTTAGTACTACACATGCAACCTATCAATCC
1 GTACACATAGTAGCCTACACTTAGTACTACACACGTGACCTATCAATCC
** * * * *
51145536 GGTACACATAACAGCCTGCACTTAGTACTACACACGTGACCTAACCATCT
1 -GTACACATAGTAGCCTACACTTAGTACTACACACGTGACCTATCAATCC
* ** * * **
51145586 G-ATACAT-GTAG--------T---ACTACACACGTGATCGAAACTATTGG
1 GTACACATAGTAGCCTACACTTAGTACTACACACGTGA-CCTATC-AATCC
* * * * * *
51145624 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTG
1 GTACACATAGTAGCCTACACTTAGTACTACACACGTGACCTATCAATC-C
*
51145674 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTA
1 GTACACATAGTAGCCTACACTTAGTACTACACACGTGACCTA
51145716 AAACTGTCTT
Statistics
Matches: 246, Mismatches: 64, Indels: 40
0.70 0.18 0.11
Matches are distributed among these distances:
36 13 0.05
37 4 0.02
38 2 0.01
39 5 0.02
40 4 0.02
47 2 0.01
48 6 0.02
49 6 0.02
50 156 0.63
51 45 0.18
52 3 0.01
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (49 bp):
GTACACATAGTAGCCTACACTTAGTACTACACACGTGACCTATCAATCC
Found at i:51145542 original size:101 final size:101
Alignment explanation
Indices: 51145391--51145572 Score: 240
Period size: 101 Copynumber: 1.8 Consensus size: 101
51145381 ATCTCGTACA
* * ** * * * **
51145391 CATAGTAGCCTGCACTTAGTGCTACACACGTGACTTATCCATCGGATACACGTAGTAGCCTACAC
1 CATAGTAGCCTACACTTAGTACTACACACGCAACCTATCAATCGGATACACATAACAGCCTACAC
51145456 TTAGTACTACACACGTAATCGAAACTATTGGGTATG
66 TTAGTACTACACACGTAATCGAAACTATTGGGTATG
* * *
51145492 CATAGTATCCTACACTTAGTACTACACATGCAACCTATCAATCCGG-TACACATAACAGCCTGCA
1 CATAGTAGCCTACACTTAGTACTACACACGCAACCTATCAAT-CGGATACACATAACAGCCTACA
51145556 CTTAGTACTACACACGT
65 CTTAGTACTACACACGT
51145573 GACCTAACCA
Statistics
Matches: 68, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
101 65 0.96
102 3 0.04
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.26
Consensus pattern (101 bp):
CATAGTAGCCTACACTTAGTACTACACACGCAACCTATCAATCGGATACACATAACAGCCTACAC
TTAGTACTACACACGTAATCGAAACTATTGGGTATG
Found at i:51145703 original size:137 final size:137
Alignment explanation
Indices: 51145457--51145716 Score: 439
Period size: 137 Copynumber: 1.9 Consensus size: 137
51145447 AGCCTACACT
* *
51145457 TAGTACTACACACGTAATCGAAACTATTGGGTATGCATAGTATCCTACACTTAGTACTACACATG
1 TAGTACTACACACGTAATCGAAACTATTGGGTACGCATAGTAGCCTACACTTAGTACTACACATG
*
51145522 CAACCTATCAATCCGGTACACATAACAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTG
66 CAACCTAACAATCCGGTACACATAACAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTG
51145587 ATACATG
131 ATACATG
* *
51145594 TAGTACTACACACGTGATCGAAACTATTGGGTACGCATAGTAGCCTGCACTTAGTACTACACATG
1 TAGTACTACACACGTAATCGAAACTATTGGGTACGCATAGTAGCCTACACTTAGTACTACACATG
* * **
51145659 CGACCTAACAATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
66 CAACCTAACAATCCGGTACACATAACAGCCTGCACTTAGTACTACACACGTGACCTAA
51145717 AACTGTCTTA
Statistics
Matches: 114, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
137 114 1.00
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.25
Consensus pattern (137 bp):
TAGTACTACACACGTAATCGAAACTATTGGGTACGCATAGTAGCCTACACTTAGTACTACACATG
CAACCTAACAATCCGGTACACATAACAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTG
ATACATG
Found at i:51145716 original size:50 final size:50
Alignment explanation
Indices: 51145594--51145758 Score: 174
Period size: 50 Copynumber: 3.2 Consensus size: 50
51145584 CTGATACATG
** * *
51145594 TAGTACTACACACGTGATCGAAACTAT-TGGGTACGCATAGTAGCCTGCACT
1 TAGTACTACACACGTGA-CCTAACAATCT-GGTACACATAGTAGCCTGCACT
* *
51145645 TAGTACTACACATGCGACCTAACAATCTGGTACACATAGTAGCCTGCACT
1 TAGTACTACACACGTGACCTAACAATCTGGTACACATAGTAGCCTGCACT
* * *
51145695 TAGTACTACACACGTGACCTAA-AA-CTGTCTTAAACACATAGTAGCCCGCACA
1 TAGTACTACACACGTGACCTAACAATCTG--GT--ACACATAGTAGCCTGCACT
51145747 TAGTACTACACA
1 TAGTACTACACA
51145759 TGTGTTCTCA
Statistics
Matches: 98, Mismatches: 11, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
48 3 0.03
49 2 0.02
50 48 0.49
51 16 0.16
52 29 0.30
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (50 bp):
TAGTACTACACACGTGACCTAACAATCTGGTACACATAGTAGCCTGCACT
Found at i:51147969 original size:46 final size:46
Alignment explanation
Indices: 51147818--51148172 Score: 194
Period size: 46 Copynumber: 7.5 Consensus size: 46
51147808 ATTGTGTGCT
* *
51147818 AGTGTAAGACATGTCTGTGACATGCATCGGC-CAT-ATTGTAAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTCGTGA-TGT-AGAGCC
* * * * *
51147864 AGTGTAAGGCCATGTCTGGGACATGACATCGGTATTGAGATG-AGAGCT
1 AGTGTAA-GACATGTCTGGGACATG-CATCGG-CTCGTGATGTAGAGCC
* *
51147912 AGTGAAAGACATGTCTAGGACATGCATCGGCCTCGTGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CTCGTGATGTAGAGCC
* * ** *
51147958 AGTGTAAGACATGTCTGGGACATGCCTCAGCTACAAGATGT---GTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCT-CGTGATGTAGAGCC
* * * * *
51148002 AGTATAAAACCGTGTCTGGGACATGGCATCAGCACG-GATATGTGAGAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTCGTG--ATGT-AGAGCC
* * * *
51148052 AGTGTAAGACCATGTCTGGGACATAGCGTCGGCT--TCGATTTCGATAGTC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTCGT-GATGT--AGAGCC
* * *
51148101 AATGTAAGACCATGTCTGGGACATGGCATCGACT--TGATGGATGAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTCGTGATGTA-GAGCC
*
51148148 AGTGTAAGATCATGTATGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
51148173 TCATTGGCAT
Statistics
Matches: 240, Mismatches: 50, Indels: 38
0.73 0.15 0.12
Matches are distributed among these distances:
44 10 0.04
45 16 0.07
46 67 0.28
47 55 0.23
48 23 0.10
49 36 0.15
50 32 0.13
51 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTCGTGATGTAGAGCC
Found at i:51148172 original size:47 final size:49
Alignment explanation
Indices: 51148047--51148172 Score: 150
Period size: 49 Copynumber: 2.6 Consensus size: 49
51148037 GGATATGTGA
* * *
51148047 GAGCCAGTGTAAGACCATGTCTGGGACATAGCGTCGGCTTCGATTTCGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTCGA-TTCGAT
* * *
51148097 -AGTCAATGTAAGACCATGTCTGGGACATGGCATCGACTT-GA-TGGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTCGATTCGAT
* *
51148143 GAGCCAGTGTAAGATCATGTATGGGACATG
1 GAGCCAGTGTAAGACCATGTCTGGGACATG
51148173 TCATTGGCAT
Statistics
Matches: 65, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
46 4 0.06
47 25 0.38
48 2 0.03
49 34 0.52
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.25
Consensus pattern (49 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTCGATTCGAT
Found at i:51175830 original size:24 final size:24
Alignment explanation
Indices: 51175760--51175832 Score: 67
Period size: 24 Copynumber: 3.0 Consensus size: 24
51175750 AAGCACCATG
* *
51175760 ATTATAGGCTTTTCATGAGCTTCCTA
1 ATTAT-GGCTCTT-ATGAGCTTCCCA
* * *
51175786 A-TATGGTTCTTTGTGAACTTCCCA
1 ATTATGGCTC-TTATGAGCTTCCCA
51175810 ATTATGGCTCTTATGAGCTTCCC
1 ATTATGGCTCTTATGAGCTTCCC
51175833 GTTATATAGC
Statistics
Matches: 37, Mismatches: 8, Indels: 6
0.73 0.16 0.12
Matches are distributed among these distances:
24 24 0.65
25 12 0.32
26 1 0.03
ACGTcount: A:0.21, C:0.22, G:0.16, T:0.41
Consensus pattern (24 bp):
ATTATGGCTCTTATGAGCTTCCCA
Found at i:51175878 original size:23 final size:24
Alignment explanation
Indices: 51175850--51175902 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
51175840 AGCCTGGATA
* *
51175850 AGCTTCGCGATA-GGCTTTTTGTT
1 AGCTTCGCGATATGGCTCTTTGTG
*
51175873 AGCTTCTCGATATGGCTCTTTGTG
1 AGCTTCGCGATATGGCTCTTTGTG
51175897 AGCTTC
1 AGCTTC
51175903 CCATTATAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 11 0.42
24 15 0.58
ACGTcount: A:0.13, C:0.21, G:0.25, T:0.42
Consensus pattern (24 bp):
AGCTTCGCGATATGGCTCTTTGTG
Found at i:51189890 original size:14 final size:14
Alignment explanation
Indices: 51189871--51189900 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
51189861 ATGAATTTTG
51189871 TATTTTAAAACTAT
1 TATTTTAAAACTAT
*
51189885 TATTTTGAAACTAT
1 TATTTTAAAACTAT
51189899 TA
1 TA
51189901 ATTCGATGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.07, G:0.03, T:0.50
Consensus pattern (14 bp):
TATTTTAAAACTAT
Found at i:51193428 original size:5 final size:5
Alignment explanation
Indices: 51193418--51193450 Score: 57
Period size: 5 Copynumber: 6.4 Consensus size: 5
51193408 ATAGTGTTTG
51193418 TTTTA TTTTA TTTTA TTTTA TTTTA TTTATA TT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTT-TA TT
51193451 CCTTTATATT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 23 0.85
6 4 0.15
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:51194361 original size:15 final size:15
Alignment explanation
Indices: 51194341--51194370 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
51194331 GAAATTGTGG
51194341 TTCTGAAACCACTAT
1 TTCTGAAACCACTAT
*
51194356 TTCTGATACCACTAT
1 TTCTGAAACCACTAT
51194371 AAATGAGCTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.37
Consensus pattern (15 bp):
TTCTGAAACCACTAT
Found at i:51201021 original size:40 final size:40
Alignment explanation
Indices: 51200909--51201024 Score: 187
Period size: 40 Copynumber: 2.9 Consensus size: 40
51200899 AGAATTGAGA
*
51200909 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTGGT
1 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
*
51200949 GTTATATCTGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
1 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
* * *
51200989 GTTACATCCGGGCTAAGTCCTGAAGGGCATTCGTGC
1 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
51201025 CAGTGATGTG
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 70 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (40 bp):
GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
Found at i:51201089 original size:43 final size:43
Alignment explanation
Indices: 51201018--51201160 Score: 151
Period size: 43 Copynumber: 3.3 Consensus size: 43
51201008 CTGAAGGGCA
* * * * * *
51201018 TTCGTGCCAGTGATGTGAAATCAGGCCTTCATGCCTAGCAGGC
1 TTCGTGCCGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGC
* * *
51201061 TTTGTGCTGGTGATATGTATTCGGGCCTTCGTTCCTAGCAGGC
1 TTCGTGCCGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGC
* * * *
51201104 TTCGTGCCGGTGATGTGTATTTGGGTCTTCGTGCCTAGCAAGC
1 TTCGTGCCGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGC
**
51201147 TTAATGCCGGTGAT
1 TTCGTGCCGGTGAT
51201161 TCGAGCAAAG
Statistics
Matches: 82, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
43 82 1.00
ACGTcount: A:0.15, C:0.22, G:0.30, T:0.33
Consensus pattern (43 bp):
TTCGTGCCGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGC
Found at i:51206874 original size:40 final size:40
Alignment explanation
Indices: 51206830--51206950 Score: 179
Period size: 40 Copynumber: 3.0 Consensus size: 40
51206820 AGAATTGAGA
*
51206830 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCATGTTGGT
1 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTGGT
*
51206870 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
1 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTGGT
* * * * *
51206910 GTTACATCCGGGCTAAGTCCTGAAGGGCATTCGTGCCGGT
1 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTGGT
51206950 G
1 G
51206951 ATGTGAAATC
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.31, T:0.27
Consensus pattern (40 bp):
GTTATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTGGT
Found at i:51207009 original size:43 final size:43
Alignment explanation
Indices: 51206962--51207069 Score: 126
Period size: 43 Copynumber: 2.5 Consensus size: 43
51206952 TGTGAAATCA
* * * *
51206962 GGCCTTCATGCCTAGCAGGCTTTGAGCTGGTGATATGTATTCG
1 GGCCTTCGTGCCTAGCAGGCTTCGAGCCGATGATATGTATTCG
* * * *
51207005 GGCCTTCGTTCCTAGCAGGCTTCGTGCCGATGATGTGTATTTG
1 GGCCTTCGTGCCTAGCAGGCTTCGAGCCGATGATATGTATTCG
* *
51207048 GGTCTTCGTGCCTAGCAAGCTT
1 GGCCTTCGTGCCTAGCAGGCTT
51207070 AATGCCGGTG
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 54 1.00
ACGTcount: A:0.14, C:0.23, G:0.30, T:0.33
Consensus pattern (43 bp):
GGCCTTCGTGCCTAGCAGGCTTCGAGCCGATGATATGTATTCG
Found at i:51207076 original size:43 final size:43
Alignment explanation
Indices: 51206992--51207081 Score: 108
Period size: 43 Copynumber: 2.1 Consensus size: 43
51206982 TTTGAGCTGG
* * **
51206992 TGATATGTATTCGGGCCTTCGTTCCTAGCAGGCTTCGTGCCGA
1 TGATATGTATTCGGGCCTTCGTGCCTAGCAAGCTTAATGCCGA
* * * *
51207035 TGATGTGTATTTGGGTCTTCGTGCCTAGCAAGCTTAATGCCGG
1 TGATATGTATTCGGGCCTTCGTGCCTAGCAAGCTTAATGCCGA
51207078 TGAT
1 TGAT
51207082 TCGAGCAAAG
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.16, C:0.21, G:0.29, T:0.34
Consensus pattern (43 bp):
TGATATGTATTCGGGCCTTCGTGCCTAGCAAGCTTAATGCCGA
Found at i:51207194 original size:25 final size:25
Alignment explanation
Indices: 51207155--51207209 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
51207145 AGTGTAATAA
51207155 CGAATGAATATAGGCACTATGTGTG
1 CGAATGAATATAGGCACTATGTGTG
*
51207180 CGAATGAAT-TGAGGCACTGTGTGTG
1 CGAATGAATAT-AGGCACTATGTGTG
*
51207205 TGAAT
1 CGAAT
51207210 TCTTTAACCG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 1 0.04
25 26 0.96
ACGTcount: A:0.29, C:0.11, G:0.31, T:0.29
Consensus pattern (25 bp):
CGAATGAATATAGGCACTATGTGTG
Found at i:51223741 original size:12 final size:12
Alignment explanation
Indices: 51223721--51223816 Score: 52
Period size: 12 Copynumber: 8.0 Consensus size: 12
51223711 CTGTTCCTTG
*
51223721 ATCAGCTCCTAA
1 ATCATCTCCTAA
* **
51223733 ATCTTCTCCTTT
1 ATCATCTCCTAA
*
51223745 ATCAGCTCCTAA
1 ATCATCTCCTAA
* *
51223757 ATCCTCTCCCT-T
1 ATCATCT-CCTAA
*
51223769 ATCAGCTCCTAA
1 ATCATCTCCTAA
* *
51223781 ATCCTCTCCCT-T
1 ATCATCT-CCTAA
*
51223793 ATCAGCTCCTAA
1 ATCATCTCCTAA
*
51223805 ATCTTCTCCTAA
1 ATCATCTCCTAA
51223817 CAGCCTTTCA
Statistics
Matches: 58, Mismatches: 22, Indels: 8
0.66 0.25 0.09
Matches are distributed among these distances:
11 6 0.10
12 46 0.79
13 6 0.10
ACGTcount: A:0.23, C:0.38, G:0.04, T:0.35
Consensus pattern (12 bp):
ATCATCTCCTAA
Found at i:51223748 original size:24 final size:24
Alignment explanation
Indices: 51223715--51223814 Score: 155
Period size: 24 Copynumber: 4.2 Consensus size: 24
51223705 CAACTCCTGT
* *
51223715 TCCTTGATCAGCTCCTAAATCTTC
1 TCCTTTATCAGCTCCTAAATCCTC
51223739 TCCTTTATCAGCTCCTAAATCCTC
1 TCCTTTATCAGCTCCTAAATCCTC
*
51223763 TCCCTTATCAGCTCCTAAATCCTC
1 TCCTTTATCAGCTCCTAAATCCTC
* *
51223787 TCCCTTATCAGCTCCTAAATCTTC
1 TCCTTTATCAGCTCCTAAATCCTC
51223811 TCCT
1 TCCT
51223815 AACAGCCTTT
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 71 1.00
ACGTcount: A:0.20, C:0.38, G:0.05, T:0.37
Consensus pattern (24 bp):
TCCTTTATCAGCTCCTAAATCCTC
Found at i:51228850 original size:24 final size:23
Alignment explanation
Indices: 51228822--51228898 Score: 118
Period size: 24 Copynumber: 3.2 Consensus size: 23
51228812 CCAACTCCTG
51228822 CTCCTTGATCAGCTCCTAAATCTT
1 CTCCTT-ATCAGCTCCTAAATCTT
*
51228846 CTCCTTTATCAGCTCCTAAATCCT
1 CTCC-TTATCAGCTCCTAAATCTT
51228870 CTCCCTTATCAGCTCCTAAATCTT
1 CT-CCTTATCAGCTCCTAAATCTT
51228894 CTCCT
1 CTCCT
51228899 GACAGCCTTT
Statistics
Matches: 49, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
23 3 0.06
24 42 0.86
25 4 0.08
ACGTcount: A:0.19, C:0.38, G:0.05, T:0.38
Consensus pattern (23 bp):
CTCCTTATCAGCTCCTAAATCTT
Found at i:51230007 original size:24 final size:24
Alignment explanation
Indices: 51229972--51230019 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
51229962 AACACACCAC
*
51229972 AGCTCTTACGAGCGTCCCGTTATA
1 AGCTCTTACGAGCGTCCCATTATA
*
51229996 AGCTCTCT-CGAGCTTCCCATTATA
1 AGCTCT-TACGAGCGTCCCATTATA
51230020 CAATTCTTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 20 0.95
25 1 0.05
ACGTcount: A:0.21, C:0.31, G:0.17, T:0.31
Consensus pattern (24 bp):
AGCTCTTACGAGCGTCCCATTATA
Found at i:51230223 original size:24 final size:25
Alignment explanation
Indices: 51230194--51230265 Score: 80
Period size: 24 Copynumber: 3.0 Consensus size: 25
51230184 AGCTACCGTT
51230194 TTATGGCTCTTTGTAAGCTTCCCGA
1 TTATGGCTCTTTGTAAGCTTCCCGA
* *
51230219 -TATGGTTCTTTGTGAA-CTTCCCCA
1 TTATGGCTCTTTGT-AAGCTTCCCGA
51230243 TTATGGCTCTTATG--AGCTTCCCG
1 TTATGGCTCTT-TGTAAGCTTCCCG
51230266 TTACATAGCC
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
23 1 0.03
24 25 0.64
25 11 0.28
26 2 0.05
ACGTcount: A:0.15, C:0.25, G:0.19, T:0.40
Consensus pattern (25 bp):
TTATGGCTCTTTGTAAGCTTCCCGA
Found at i:51243596 original size:94 final size:93
Alignment explanation
Indices: 51243402--51243705 Score: 294
Period size: 94 Copynumber: 3.2 Consensus size: 93
51243392 AGTATAATAC
* * * * *
51243402 CATGTTTGGGACATGGCATCGGCATTGAGACGAGGGCTAGTGTAAGACATATCTGGGACATGCAT
1 CATGTCTGGGACATGGCATCGGC-TAGAGATGAGTGCTAGTGTAAGACATGTCTGGGACATGCAT
* * * *
51243467 CATCCAC-ATTAAGATAGCCAGTGTAAGGC
65 CAGCCACGATCAAGATAGCTAGTGTAA-GA
* *
51243496 CATGTCTGGGACATGGCATCGGCGTAGAGATGAGTGCCAGTGTAAGACATGTTTGGGACATGCAT
1 CATGTCTGGGACATGGCATCGGC-TAGAGATGAGTGCTAGTGTAAGACATGTCTGGGACATGCAT
* * * *
51243561 CGGCCTCGATGATGATAGCTAGTGTAAGA
65 CAGCCACGATCAAGATAGCTAGTGTAAGA
* * ** ** *
51243590 CGTGTCTGGGACAT-GCCTCGGCTA-ATTTTCGTGCTAGTATAAGACATGTCTGGGACATGCATC
1 CATGTCTGGGACATGGCATCGGCTAGAGATGAGTGCTAGTGTAAGACATGTCTGGGACATGCATC
*
51243653 AG-CACGTATACACA-AGAGCTAGTGTAAGA
66 AGCCACG-AT-CA-AGATAGCTAGTGTAAGA
*
51243682 CCATGTCTGCGACATGGCATCGGC
1 -CATGTCTGGGACATGGCATCGGC
51243706 CTCGATGGAG
Statistics
Matches: 172, Mismatches: 32, Indels: 12
0.80 0.15 0.06
Matches are distributed among these distances:
90 3 0.02
91 35 0.20
92 17 0.10
93 19 0.11
94 82 0.48
95 16 0.09
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.24
Consensus pattern (93 bp):
CATGTCTGGGACATGGCATCGGCTAGAGATGAGTGCTAGTGTAAGACATGTCTGGGACATGCATC
AGCCACGATCAAGATAGCTAGTGTAAGA
Found at i:51243605 original size:47 final size:47
Alignment explanation
Indices: 51243402--51243742 Score: 207
Period size: 47 Copynumber: 7.2 Consensus size: 47
51243392 AGTATAATAC
* * * * **
51243402 CATGTTTGGGACATGGCATCGGCATTGA-GACGAGGGCTAGTGTAAGA
1 CATGTCTGGGACAT-GCATCGGCCTCGATGATGATAGCTAGTGTAAGA
* ** * * * * *
51243449 CATATCTGGGACATGCATCATCCAC-ATTAAGATAGCCAGTGTAAGGC
1 CATGTCTGGGACATGCATCGGCCTCGATGATGATAGCTAGTGTAA-GA
* * *
51243496 CATGTCTGGGACATGGCATCGGCGTAGA-GATGAGT-GCCAGTGTAAGA
1 CATGTCTGGGACAT-GCATCGGCCTCGATGATGA-TAGCTAGTGTAAGA
*
51243543 CATGTTTGGGACATGCATCGGCCTCGATGATGATAGCTAGTGTAAGA
1 CATGTCTGGGACATGCATCGGCCTCGATGATGATAGCTAGTGTAAGA
* * * ** *
51243590 CGTGTCTGGGACATGCCTCGG-CT-AATTTTCG-T-GCTAGTATAAGA
1 CATGTCTGGGACATGCATCGGCCTCGATGAT-GATAGCTAGTGTAAGA
* * * ** *
51243634 CATGTCTGGGACATGCATCAG-CACGTATACACAAGAGCTAGTGTAAGA
1 CATGTCTGGGACATGCATCGGCCTCG-AT-GATGATAGCTAGTGTAAGA
* * * *
51243682 CCATGTCTGCGACATGGCATCGGCCTCGATGGA-GATAGCCAGCGTAAAA
1 -CATGTCTGGGACAT-GCATCGGCCTCGAT-GATGATAGCTAGTGTAAGA
51243731 CCATGTCTGGGA
1 -CATGTCTGGGA
51243743 TATGGCAGCA
Statistics
Matches: 223, Mismatches: 55, Indels: 30
0.72 0.18 0.10
Matches are distributed among these distances:
44 30 0.13
45 5 0.02
46 35 0.16
47 74 0.33
48 30 0.13
49 37 0.17
50 9 0.04
51 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (47 bp):
CATGTCTGGGACATGCATCGGCCTCGATGATGATAGCTAGTGTAAGA
Found at i:51246489 original size:30 final size:30
Alignment explanation
Indices: 51246432--51246489 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
51246422 CTTTCGAGCA
* **
51246432 TAGGGGTAAAATGGTCATTTTGTCAAAGTC
1 TAGGGGTAAAATAGTCATTTTACCAAAGTC
51246462 TAGGGGTAAAATAGTCATTTTACCAAAG
1 TAGGGGTAAAATAGTCATTTTACCAAAG
51246490 ACGTAAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.34, C:0.10, G:0.24, T:0.31
Consensus pattern (30 bp):
TAGGGGTAAAATAGTCATTTTACCAAAGTC
Found at i:51247026 original size:47 final size:46
Alignment explanation
Indices: 51246879--51247043 Score: 142
Period size: 47 Copynumber: 3.6 Consensus size: 46
51246869 GACGAGGGCT
* * * *
51246879 AGTGTAAGACATGTTTGGGACATGCATCAACCGC-ATCATGATAGCC
1 AGTGTAAGACACGTCTGGGACATGCATCAACCTCGATGAT-ATAGCC
* * * * *
51246925 CGTGTAAGACCACGTCTGGGACATG--GCGACATAGAGGTGA-ATA-CC
1 AGTGTAAGA-CACGTCTGGGACATGCATCAACCTCGA--TGATATAGCC
*
51246970 AGTGTAAGACATGTCTGGGACATGCATCAACCTCGATGATATTAGCC
1 AGTGTAAGACACGTCTGGGACATGCATCAACCTCGATGATA-TAGCC
* *
51247017 AGTGTAAGACGCGTCTGGGGCATGCAT
1 AGTGTAAGACACGTCTGGGACATGCAT
51247044 TGGCTAAGTT
Statistics
Matches: 92, Mismatches: 18, Indels: 17
0.72 0.14 0.13
Matches are distributed among these distances:
44 17 0.18
45 14 0.15
46 20 0.22
47 39 0.42
48 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACACGTCTGGGACATGCATCAACCTCGATGATATAGCC
Found at i:51256207 original size:79 final size:81
Alignment explanation
Indices: 51256065--51256247 Score: 225
Period size: 79 Copynumber: 2.3 Consensus size: 81
51256055 TACTCGTTCA
* *
51256065 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
* *
51256129 TTTAGT-AGC-TCGCACC
66 TATAGTCA-CTTAGCA-C
**
51256145 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
*
51256207 ATATGGTCACTTAGCAC
65 ATATAGTCACTTAGCAC
*
51256224 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
51256248 CATCATTCGA
Statistics
Matches: 90, Mismatches: 8, Indels: 10
0.83 0.07 0.09
Matches are distributed among these distances:
78 3 0.03
79 58 0.64
80 29 0.32
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTCACTTAGCAC
Found at i:51256247 original size:40 final size:40
Alignment explanation
Indices: 51256044--51256247 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
51256034 CGGAATTTAA
** *
51256044 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
51256084 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
51256124 CCGGATTTAGTAGCTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
51256163 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
51256203 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
51256243 CCGGA
1 CCGGA
51256248 CATCATTCGA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 93 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:51264288 original size:79 final size:81
Alignment explanation
Indices: 51264144--51264328 Score: 211
Period size: 79 Copynumber: 2.3 Consensus size: 81
51264134 GCTACTCGTT
* * *
51264144 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATACCTTCGGGACTTAACCCG
* *
51264208 GATTTAGT-AGC-TCGCA
65 GATATAGTCA-CTTAGCA
* **
51264224 CCAACGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATACCTTC-GGATCTTAGTCC
1 -CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATACCTTCGGGA-CTTAACCC
*
51264286 GGATATGGTCACTTAGCA
64 GGATATAGTCACTTAGCA
51264304 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
51264329 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
78 3 0.03
79 57 0.64
80 26 0.29
81 3 0.03
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (81 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATACCTTCGGGACTTAACCCGG
ATATAGTCACTTAGCA
Found at i:51264328 original size:40 final size:40
Alignment explanation
Indices: 51264126--51264328 Score: 209
Period size: 40 Copynumber: 5.1 Consensus size: 40
51264116 GGAATTTAAT
** *
51264126 CGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGCC
1 CGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCC
* *
51264166 CGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
* * * *
51264206 CGGATTTAGTAGCTCGCACCAACGCCTTCGGG-CTTAGCC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
* *
51264245 CGGA-ATTAGTAACTCGCACAAATACCTTC-GGATCTTAGTC
1 CGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCC
* * *
51264285 CGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCC
1 CGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCC
51264325 CGGA
1 CGGA
51264329 CATCATTCGA
Statistics
Matches: 134, Mismatches: 22, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
38 2 0.01
39 30 0.22
40 90 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
Found at i:51272239 original size:40 final size:40
Alignment explanation
Indices: 51272048--51272232 Score: 223
Period size: 40 Copynumber: 4.7 Consensus size: 40
51272038 TCGAATGATG
* * * *
51272048 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
51272088 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
51272128 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGCTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
51272167 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
51272207 ACCGAGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51272233 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
39 34 0.27
40 82 0.66
41 8 0.06
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:51272254 original size:79 final size:79
Alignment explanation
Indices: 51272101--51272265 Score: 208
Period size: 79 Copynumber: 2.1 Consensus size: 79
51272091 GGACTAAGAT
** * **
51272101 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGCTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAAAACCGAGCTAAGCCCGAAGGCATTGGAACGAGCTACTAA
*
51272166 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
51272180 CCGAAGGCATTTGTGCGAGTTACTAAAACCGAGCTATGTCCCGAAGGCATTTGAACGAG-TAGCT
1 CCGAAGGCATTTGTGCGAGTTACTAAAACCGAGCTAAG-CCCGAAGGCATTGGAACGAGCTA-CT
* *
51272244 ATATCC-GGTTAAATT
64 AAATCCGGGTTAAATC
51272259 CCGAAGG
1 CCGAAGG
51272266 TACGTGATTT
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 50 0.68
80 24 0.32
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAAAACCGAGCTAAGCCCGAAGGCATTGGAACGAGCTACTAA
ATCCGGGTTAAATC
Found at i:51279125 original size:21 final size:20
Alignment explanation
Indices: 51279099--51279144 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
51279089 AATTATAAAG
51279099 GAAATGAAAGTAAAAGAAATA
1 GAAATGAAAGTAAAAGAAA-A
* * *
51279120 GAAATGAAGGTTAATGAAAA
1 GAAATGAAAGTAAAAGAAAA
51279140 GAAAT
1 GAAAT
51279145 AGTATATGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 6 0.27
21 16 0.73
ACGTcount: A:0.61, C:0.00, G:0.22, T:0.17
Consensus pattern (20 bp):
GAAATGAAAGTAAAAGAAAA
Found at i:51280004 original size:10 final size:10
Alignment explanation
Indices: 51279989--51280045 Score: 62
Period size: 10 Copynumber: 5.8 Consensus size: 10
51279979 TGAACATGAT
*
51279989 TTAAGAATTA
1 TTAAAAATTA
*
51279999 TTAAGAATTA
1 TTAAAAATTA
*
51280009 TAAAAAATTA
1 TTAAAAATTA
*
51280019 -TAAAAATCA
1 TTAAAAATTA
*
51280028 TTTAAAATTA
1 TTAAAAATTA
51280038 TTAAAAAT
1 TTAAAAAT
51280046 AACATCCAAA
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
9 7 0.18
10 32 0.82
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.37
Consensus pattern (10 bp):
TTAAAAATTA
Found at i:51280090 original size:11 final size:11
Alignment explanation
Indices: 51280070--51280114 Score: 56
Period size: 11 Copynumber: 4.2 Consensus size: 11
51280060 CTTGAATTTC
*
51280070 TTAAATAATTA
1 TTAAAAAATTA
51280081 TTAAAAAATTA
1 TTAAAAAATTA
*
51280092 -TACAAAATTA
1 TTAAAAAATTA
*
51280102 TTTAAAAATTA
1 TTAAAAAATTA
51280113 TT
1 TT
51280115 TTTTATAATG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
10 9 0.31
11 20 0.69
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (11 bp):
TTAAAAAATTA
Found at i:51281108 original size:20 final size:21
Alignment explanation
Indices: 51281054--51281108 Score: 53
Period size: 20 Copynumber: 2.7 Consensus size: 21
51281044 ATAGTTCTTG
* *
51281054 ATAATTATTAAATAATTTTCT
1 ATAATTATTTAATAAGTTTCT
*
51281075 ATGA-TATTGT-ATAAGTTT-T
1 ATAATTATT-TAATAAGTTTCT
51281094 ATAATTATTTAATAA
1 ATAATTATTTAATAA
51281109 TTATTTAAGA
Statistics
Matches: 27, Mismatches: 4, Indels: 7
0.71 0.11 0.18
Matches are distributed among these distances:
19 5 0.19
20 19 0.70
21 3 0.11
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.51
Consensus pattern (21 bp):
ATAATTATTTAATAAGTTTCT
Found at i:51281223 original size:10 final size:10
Alignment explanation
Indices: 51281201--51281246 Score: 60
Period size: 9 Copynumber: 4.8 Consensus size: 10
51281191 TCCAAACATT
*
51281201 ATTTTTAGT-
1 ATTTTTAATA
51281210 ATTTTTAATA
1 ATTTTTAATA
51281220 A-TTTTAATA
1 ATTTTTAATA
51281229 ATTTTTAATA
1 ATTTTTAATA
*
51281239 ATTATTAA
1 ATTTTTAA
51281247 AAGTTTTTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
9 17 0.52
10 16 0.48
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (10 bp):
ATTTTTAATA
Found at i:51281253 original size:19 final size:19
Alignment explanation
Indices: 51281212--51281253 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
51281202 TTTTTAGTAT
*
51281212 TTTTAATAATTTTAATAAT
1 TTTTAATAATTTTAATAAG
51281231 TTTTAATAATTATTAA-AAG
1 TTTTAATAATT-TTAATAAG
51281250 TTTT
1 TTTT
51281254 TTATTTTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (19 bp):
TTTTAATAATTTTAATAAG
Found at i:51281650 original size:16 final size:16
Alignment explanation
Indices: 51281623--51281661 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
51281613 GCGAGAACTA
51281623 TAAAATTTAAAGAAATT
1 TAAAA-TTAAAGAAATT
* *
51281640 TAAAATTAAAGTATTT
1 TAAAATTAAAGAAATT
51281656 TAAAAT
1 TAAAAT
51281662 GCATTGTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 15 0.75
17 5 0.25
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.38
Consensus pattern (16 bp):
TAAAATTAAAGAAATT
Found at i:51284611 original size:19 final size:20
Alignment explanation
Indices: 51284587--51284625 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
51284577 TAAATAATCT
*
51284587 TTACTATAAT-TATAATAAA
1 TTACTATAATCTACAATAAA
51284606 TTACTATAATCTACAATAAA
1 TTACTATAATCTACAATAAA
51284626 ACTAATATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.51, C:0.10, G:0.00, T:0.38
Consensus pattern (20 bp):
TTACTATAATCTACAATAAA
Found at i:51288231 original size:10 final size:9
Alignment explanation
Indices: 51288191--51288326 Score: 51
Period size: 9 Copynumber: 14.3 Consensus size: 9
51288181 TTTTAGAAAA
51288191 TTTTAAATT
1 TTTTAAATT
*
51288200 TTTTAACTT
1 TTTTAAATT
51288209 TCTTTATATATT
1 T-TTTA-A-ATT
51288221 TTTTAGAATTTT
1 TTTTA-AA--TT
*
51288233 TTTTAAA-A
1 TTTTAAATT
* *
51288241 ATTTATAATA
1 TTTTA-AATT
**
51288251 TTTTAAAAA
1 TTTTAAATT
* *
51288260 ATATAA-TT
1 TTTTAAATT
*
51288268 TTTGAAATT
1 TTTTAAATT
*
51288277 TTTATAAATA
1 TTT-TAAATT
51288287 TTTTAAATT
1 TTTTAAATT
**
51288296 TTAAAAATT
1 TTTTAAATT
*
51288305 ATTTTGAATT
1 -TTTTAAATT
*
51288315 TTTTTAATT
1 TTTTAAATT
51288324 TTT
1 TTT
51288327 GTTGAGAGAG
Statistics
Matches: 94, Mismatches: 23, Indels: 20
0.69 0.17 0.15
Matches are distributed among these distances:
8 7 0.07
9 46 0.49
10 23 0.24
11 8 0.09
12 10 0.11
ACGTcount: A:0.37, C:0.01, G:0.02, T:0.60
Consensus pattern (9 bp):
TTTTAAATT
Found at i:51288296 original size:19 final size:20
Alignment explanation
Indices: 51288232--51288317 Score: 63
Period size: 19 Copynumber: 4.2 Consensus size: 20
51288222 TTTAGAATTT
*
51288232 TTTTTAAAAA-T-TTATAATA
1 TTTTTAAAAATTATTTTAA-A
*
51288251 TTTTAAAAAATATAATTTTTGAAA
1 TTTTTAAAAAT-T-A-TTTT-AAA
*
51288275 TTTTTATAAA-TATTTTAAA
1 TTTTTAAAAATTATTTTAAA
*
51288294 -TTTTAAAAATTATTTTGAA
1 TTTTTAAAAATTATTTTAAA
51288313 TTTTT
1 TTTTT
51288318 TTAATTTTTG
Statistics
Matches: 53, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
18 8 0.15
19 20 0.38
20 8 0.15
21 2 0.04
22 1 0.02
24 12 0.23
25 2 0.04
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (20 bp):
TTTTTAAAAATTATTTTAAA
Done.