Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 159 of 356
Found at i:51288323 original size:19 final size:19
Alignment explanation
Indices: 51288267--51288323 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
51288257 AAAATATAAT
*
51288267 TTTTGAAATTTTTATAAATA
1 TTTTG-AATTTTTATAATTA
* * *
51288287 TTTTAAATTTTAAAAATTA
1 TTTTGAATTTTTATAATTA
*
51288306 TTTTGAATTTTTTTAATT
1 TTTTGAATTTTTATAATT
51288324 TTTGTTGAGA
Statistics
Matches: 29, Mismatches: 8, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
19 25 0.86
20 4 0.14
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.60
Consensus pattern (19 bp):
TTTTGAATTTTTATAATTA
Found at i:51288768 original size:18 final size:21
Alignment explanation
Indices: 51288745--51288786 Score: 63
Period size: 18 Copynumber: 2.1 Consensus size: 21
51288735 GACACCACCA
51288745 ATTTTTT-AATAT-TT-TTTT
1 ATTTTTTAAATATATTATTTT
51288763 ATTTTTTAAATATATTATTTT
1 ATTTTTTAAATATATTATTTT
51288784 ATT
1 ATT
51288787 AGTGGTGTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 7 0.33
19 5 0.24
20 2 0.10
21 7 0.33
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (21 bp):
ATTTTTTAAATATATTATTTT
Found at i:51294600 original size:13 final size:13
Alignment explanation
Indices: 51294582--51294606 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51294572 AAATAACTAT
51294582 AAAATAATTTTAA
1 AAAATAATTTTAA
51294595 AAAATAATTTTA
1 AAAATAATTTTA
51294607 CATTAATAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
AAAATAATTTTAA
Found at i:51294648 original size:105 final size:105
Alignment explanation
Indices: 51294492--51294866 Score: 415
Period size: 105 Copynumber: 3.6 Consensus size: 105
51294482 ATTACATTAT
* * * * *
51294492 AAAAAATTTACATCAATAAAAAATCACAAAACACTAAACTAAATACTAACAATTTATAACCTAAT
1 AAAAAATTTACATTAATAAAAAATCACAAAACACTAAACAAAACACAAACAATTTATAACGTAAT
51294557 CATAAATTACTAACAAAATAACTATAAAATAATTTTAAAA
66 CATAAATTACTAACAAAATAACTATAAAATAATTTTAAAA
* * * * * *
51294597 AATAATTTTACATTAATAAAAAAATAAAAAAATACTAAACCAAACAC-AACAATTTATAACGTAA
1 AAAAAATTTACATTAAT-AAAAAATCACAAAACACTAAACAAAACACAAACAATTTATAACGTAA
* *
51294661 T-AAAAAGTTATTAACAAAATAACTATAAAATAATTTTAAAAAA
65 TCATAAA-TTACTAACAAAATAACTATAAAATAATTTT--AAAA
* *
51294704 ACAAAAATTTACATTAATAAAAATTCACAAAACACTAAACTAAAACACAAACAAATTATAACGTA
1 A-AAAAATTTACATTAATAAAAAATCACAAAACACTAAAC-AAAACACAAACAATTTATAACGTA
* * *
51294769 ATCATAAATTACTAACAAAATAATTTTAAAATAA--TT-ATA
64 ATCATAAATTACTAACAAAATAACTATAAAATAATTTTAAAA
* ** *
51294808 AAAAAA-TTACATTCATAAAAAA-CATTAAAC-CATAAACACTAAACATAAACAATTTATAA
1 AAAAAATTTACATTAATAAAAAATCACAAAACAC-TAAACA--AAACACAAACAATTTATAA
51294867 TAATTAATAA
Statistics
Matches: 229, Mismatches: 30, Indels: 25
0.81 0.11 0.09
Matches are distributed among these distances:
100 2 0.01
101 11 0.05
102 31 0.14
103 5 0.02
104 7 0.03
105 60 0.26
106 24 0.10
107 25 0.11
108 20 0.09
109 40 0.17
110 4 0.02
ACGTcount: A:0.60, C:0.13, G:0.01, T:0.26
Consensus pattern (105 bp):
AAAAAATTTACATTAATAAAAAATCACAAAACACTAAACAAAACACAAACAATTTATAACGTAAT
CATAAATTACTAACAAAATAACTATAAAATAATTTTAAAA
Found at i:51294790 original size:109 final size:106
Alignment explanation
Indices: 51294492--51294813 Score: 425
Period size: 105 Copynumber: 3.0 Consensus size: 106
51294482 ATTACATTAT
* * *
51294492 AAAAAATTTACATCAATAAAAAATCACAAAACACTAAACTAAATACTAACAATTTATAACCTAAT
1 AAAAAATTTACATTAATAAAAAATCACAAAACACTAAACTAAACAC-AACAATTTATAACGTAAT
51294557 CATAAATTACTAACAAAATAACTATAAAATAATTTT--AAAA
65 CATAAATTACTAACAAAATAACTATAAAATAATTTTAAAAAA
* * * * * *
51294597 AATAATTTTACATTAATAAAAAAATAAAAAAATACTAAACCAAACACAACAATTTATAACGTAAT
1 AAAAAATTTACATTAAT-AAAAAATCACAAAACACTAAACTAAACACAACAATTTATAACGTAAT
* *
51294662 -AAAAAGTTATTAACAAAATAACTATAAAATAATTTTAAAAAA
65 CATAAA-TTACTAACAAAATAACTATAAAATAATTTTAAAAAA
* *
51294704 ACAAAAATTTACATTAATAAAAATTCACAAAACACTAAACTAAAACACAAACAAATTATAACGTA
1 A-AAAAATTTACATTAATAAAAAATCACAAAACACTAAACT-AAACAC-AACAATTTATAACGTA
* * *
51294769 ATCATAAATTACTAACAAAATAATTTTAAAATAATTATAAAAAA
63 ATCATAAATTACTAACAAAATAACTATAAAATAATTTTAAAAAA
51294813 A
1 A
51294814 TTACATTCAT
Statistics
Matches: 185, Mismatches: 24, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
104 4 0.02
105 60 0.32
106 24 0.13
107 23 0.12
108 20 0.11
109 50 0.27
110 4 0.02
ACGTcount: A:0.61, C:0.12, G:0.01, T:0.26
Consensus pattern (106 bp):
AAAAAATTTACATTAATAAAAAATCACAAAACACTAAACTAAACACAACAATTTATAACGTAATC
ATAAATTACTAACAAAATAACTATAAAATAATTTTAAAAAA
Found at i:51294963 original size:4 final size:4
Alignment explanation
Indices: 51294956--51295002 Score: 55
Period size: 4 Copynumber: 12.0 Consensus size: 4
51294946 AATACATACA
51294956 TTTC TTTC TTTC TTTC TTTC TTTC -TTC -TTC -TTC TTCTCC TTTC TTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TT-T-C TTTC TTTC
51295003 CCTCTTTTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
3 9 0.22
4 26 0.65
5 2 0.05
6 3 0.08
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (4 bp):
TTTC
Found at i:51295644 original size:20 final size:19
Alignment explanation
Indices: 51295619--51295664 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
51295609 TTTTTTGTTA
*
51295619 TTTTAAGAATGAAATATAAT
1 TTTTAA-AATAAAATATAAT
*
51295639 TTTTAAATTAAAATATAAT
1 TTTTAAAATAAAATATAAT
51295658 TTTTAAA
1 TTTTAAA
51295665 TAATATTAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 18 0.75
20 6 0.25
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (19 bp):
TTTTAAAATAAAATATAAT
Found at i:51297211 original size:14 final size:15
Alignment explanation
Indices: 51297192--51297221 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
51297182 AAAGGTTAGA
51297192 TTTTATTT-TTATTT
1 TTTTATTTATTATTT
51297206 TTTTATTTATTATTT
1 TTTTATTTATTATTT
51297221 T
1 T
51297222 GTGATATGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTTATTTATTATTT
Found at i:51300638 original size:43 final size:43
Alignment explanation
Indices: 51300591--51300676 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
51300581 ATGAAAGTTT
51300591 GCCGATGAATTATTTATTGATTATTATAAAGCTTACTATAATC
1 GCCGATGAATTATTTATTGATTATTATAAAGCTTACTATAATC
51300634 GCCGATGAATTATTTATTGATTATTATAAAGCTTACTATAATC
1 GCCGATGAATTATTTATTGATTATTATAAAGCTTACTATAATC
51300677 TATGTGTGTG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.42
Consensus pattern (43 bp):
GCCGATGAATTATTTATTGATTATTATAAAGCTTACTATAATC
Found at i:51301151 original size:40 final size:40
Alignment explanation
Indices: 51301096--51301402 Score: 551
Period size: 40 Copynumber: 7.7 Consensus size: 40
51301086 AGCATTGGAT
51301096 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
51301136 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
51301176 TATATCCGGGCTAAGACCTGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
51301216 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
51301256 TATATCCGGGCTAAGACCCGAAGGCAACTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
** *
51301296 TATATCCGGGCTGTGACCCGAAGGCAATTATGCGAGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
51301336 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
51301376 TATGTCCGGGTTAAGACCCGAAGGCAA
1 TATATCCGGGCTAAGACCCGAAGGCAA
51301403 ATGTGTTTGC
Statistics
Matches: 255, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 255 1.00
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
Found at i:51305899 original size:14 final size:14
Alignment explanation
Indices: 51305880--51305915 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
51305870 TTGTTTCCCT
*
51305880 GAAAATGGCTTCTG
1 GAAAATGACTTCTG
*
51305894 GAAAATGATTTCTG
1 GAAAATGACTTCTG
51305908 GAAAATGA
1 GAAAATGA
51305916 TTTACTTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.28
Consensus pattern (14 bp):
GAAAATGACTTCTG
Found at i:51305916 original size:14 final size:14
Alignment explanation
Indices: 51305889--51305918 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
51305879 TGAAAATGGC
51305889 TTCTGGAAAATGAT
1 TTCTGGAAAATGAT
51305903 TTCTGGAAAATGAT
1 TTCTGGAAAATGAT
51305917 TT
1 TT
51305919 ACTTTTCTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.33, C:0.07, G:0.20, T:0.40
Consensus pattern (14 bp):
TTCTGGAAAATGAT
Found at i:51306402 original size:15 final size:15
Alignment explanation
Indices: 51306382--51306433 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
51306372 ACTACAAAAC
51306382 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
51306397 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
51306416 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
51306431 ATT
1 ATT
51306434 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:51312274 original size:16 final size:16
Alignment explanation
Indices: 51312243--51312279 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
51312233 ACATGAAGAA
51312243 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
51312259 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
51312275 TATTA
1 TATTA
51312280 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:51312318 original size:16 final size:18
Alignment explanation
Indices: 51312299--51312351 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 18
51312289 TAAAATATCA
51312299 AATAATTTATTAAA-A-T
1 AATAATTTATTAAATATT
51312315 AATAAATTATATTAATTATATT
1 AAT-AATT-TATTAA--ATATT
51312337 AATAATTTATTAAAT
1 AATAATTTATTAAAT
51312352 GACTAAATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
16 3 0.10
17 4 0.13
18 8 0.26
20 7 0.23
21 5 0.16
22 4 0.13
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
AATAATTTATTAAATATT
Found at i:51312321 original size:20 final size:20
Alignment explanation
Indices: 51312287--51312350 Score: 55
Period size: 20 Copynumber: 3.3 Consensus size: 20
51312277 TTAAAATAAA
51312287 ATTAAAAT-ATCAAATAATTT
1 ATTAAAATAAT-AAATAATTT
*
51312307 ATTAAAATAATAAAT--TAT
1 ATTAAAATAATAAATAATTT
* *
51312325 ATT-AATTATATTAATAATTT
1 ATTAAAATA-ATAAATAATTT
51312345 ATTAAA
1 ATTAAA
51312351 TGACTAAATA
Statistics
Matches: 35, Mismatches: 4, Indels: 9
0.73 0.08 0.19
Matches are distributed among these distances:
17 4 0.11
18 10 0.29
20 17 0.49
21 4 0.11
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (20 bp):
ATTAAAATAATAAATAATTT
Found at i:51312414 original size:21 final size:22
Alignment explanation
Indices: 51312390--51312434 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
51312380 ATTTAATAAT
51312390 ATTAAAAATATAATA-TTTTAA
1 ATTAAAAATATAATATTTTTAA
* * *
51312411 ATTAATATTTTAATATTTTTAA
1 ATTAAAAATATAATATTTTTAA
51312433 AT
1 AT
51312435 ATTTTTAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
ATTAAAAATATAATATTTTTAA
Found at i:51312418 original size:13 final size:14
Alignment explanation
Indices: 51312385--51312423 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
51312375 TGTATATTTA
**
51312385 ATAATATTAAAAAT
1 ATAATATTTTAAAT
51312399 ATAATATTTTAAAT
1 ATAATATTTTAAAT
51312413 -TAATATTTTAA
1 ATAATATTTTAA
51312424 TATTTTTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 11 0.48
14 12 0.52
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (14 bp):
ATAATATTTTAAAT
Found at i:51312483 original size:24 final size:25
Alignment explanation
Indices: 51312429--51312483 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 25
51312419 TTTAATATTT
51312429 TTAAATATTTTTAAAAATAAAAATA
1 TTAAATATTTTTAAAAATAAAAATA
** * *
51312454 AAAAATATTTTT-AATATAATAATA
1 TTAAATATTTTTAAAAATAAAAATA
51312478 TTAAAT
1 TTAAAT
51312484 TTGATTTAAG
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
24 14 0.58
25 10 0.42
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (25 bp):
TTAAATATTTTTAAAAATAAAAATA
Found at i:51312640 original size:19 final size:20
Alignment explanation
Indices: 51312594--51312642 Score: 55
Period size: 22 Copynumber: 2.4 Consensus size: 20
51312584 GAAAAATGAC
*
51312594 TTATTTTACGTTGACCTATAAG
1 TTATTTTCCGTTGACC--TAAG
*
51312616 TCATTTTCCGTTGACC-AAG
1 TTATTTTCCGTTGACCTAAG
51312635 TTATTTTC
1 TTATTTTC
51312643 TGTGAAACAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
19 10 0.42
22 14 0.58
ACGTcount: A:0.22, C:0.18, G:0.12, T:0.47
Consensus pattern (20 bp):
TTATTTTCCGTTGACCTAAG
Found at i:51312872 original size:16 final size:15
Alignment explanation
Indices: 51312846--51312875 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
51312836 GAAATTTTTT
51312846 AAATAATATTATTTC
1 AAATAATATTATTTC
51312861 AAATATATATTATTT
1 AAATA-ATATTATTT
51312876 ATAATTTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (15 bp):
AAATAATATTATTTC
Found at i:51334535 original size:40 final size:40
Alignment explanation
Indices: 51334484--51334828 Score: 557
Period size: 40 Copynumber: 8.6 Consensus size: 40
51334474 CATTTGAATG
*
51334484 ATATCCGGGCTAAGACTCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
51334524 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
51334564 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
51334604 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
51334644 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAACTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
51334684 ATATCCGGGCTAAGACCCGACGGCGTTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
51334724 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAA-TTGAT
* * *
51334764 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
51334804 ATACCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
51334829 ATTGAGCTTG
Statistics
Matches: 285, Mismatches: 18, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
39 2 0.01
40 282 0.99
41 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
Found at i:51337196 original size:45 final size:41
Alignment explanation
Indices: 51337142--51337264 Score: 131
Period size: 41 Copynumber: 2.9 Consensus size: 41
51337132 ATATGTGTTC
51337142 TCGTGTAAGACCACGTCTGGGACGTTGGCATCGGTATATGTAGT
1 TCGTGTAAGACCACGTCTGGGACGTTGGCATC-GTATATG-A-T
* * * *
51337186 TACGTGTAAGACCATGTCTGGGACATCGGCATCGTATTTGAT
1 T-CGTGTAAGACCACGTCTGGGACGTTGGCATCGTATATGAT
* * *
51337228 TCGTGTAAGACC-CTGTCTGGGATGATGGCATTGTATA
1 TCGTGTAAGACCAC-GTCTGGGACGTTGGCATCGTATA
51337265 ATATATGTGA
Statistics
Matches: 66, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
41 28 0.42
42 2 0.03
43 1 0.02
44 7 0.11
45 28 0.42
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (41 bp):
TCGTGTAAGACCACGTCTGGGACGTTGGCATCGTATATGAT
Found at i:51337245 original size:41 final size:44
Alignment explanation
Indices: 51337142--51337249 Score: 134
Period size: 45 Copynumber: 2.5 Consensus size: 44
51337132 ATATGTGTTC
* *
51337142 TCGTGTAAGACCAC-GTCTGGGACGTTGGCATCGGTATATGTAGT
1 TCGTGTAAGACC-CTGTCTGGGACATCGGCATCGGTATATGTAGT
* *
51337186 TACGTGTAAGACCATGTCTGGGACATCGGCATC-GTATTTG-A-T
1 T-CGTGTAAGACCCTGTCTGGGACATCGGCATCGGTATATGTAGT
51337228 TCGTGTAAGACCCTGTCTGGGA
1 TCGTGTAAGACCCTGTCTGGGA
51337250 TGATGGCATT
Statistics
Matches: 57, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
41 20 0.35
42 2 0.04
43 1 0.02
44 7 0.12
45 27 0.47
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (44 bp):
TCGTGTAAGACCCTGTCTGGGACATCGGCATCGGTATATGTAGT
Found at i:51345762 original size:19 final size:19
Alignment explanation
Indices: 51345717--51345763 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
51345707 ATCAAATTAA
*
51345717 AATAAAAATAAAAATATAG
1 AATAAAAATAAAAATAAAG
* *
51345736 AATCAAAACT-AAAATAAAT
1 AAT-AAAAATAAAAATAAAG
51345755 AATAAAAAT
1 AATAAAAAT
51345764 TAGATTAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 5 0.22
19 13 0.57
20 5 0.22
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.21
Consensus pattern (19 bp):
AATAAAAATAAAAATAAAG
Found at i:51345787 original size:31 final size:32
Alignment explanation
Indices: 51345707--51345787 Score: 100
Period size: 31 Copynumber: 2.6 Consensus size: 32
51345697 AAAATTCATT
51345707 ATCAAAT-TAAAATAAA-AATAAAAATATAGA
1 ATCAAATATAAAATAAATAATAAAAATATAGA
51345737 ATCAAA-ACTAAAATAAATAATAAAAAT-TAG-
1 ATCAAATA-TAAAATAAATAATAAAAATATAGA
*
51345767 ATTAAATATAAATATAAATAA
1 ATCAAATATAAA-ATAAATAA
51345788 AGTACAACAA
Statistics
Matches: 45, Mismatches: 1, Indels: 9
0.82 0.02 0.16
Matches are distributed among these distances:
30 15 0.33
31 21 0.47
32 9 0.20
ACGTcount: A:0.68, C:0.04, G:0.02, T:0.26
Consensus pattern (32 bp):
ATCAAATATAAAATAAATAATAAAAATATAGA
Found at i:51350076 original size:7 final size:7
Alignment explanation
Indices: 51350040--51350097 Score: 64
Period size: 7 Copynumber: 8.0 Consensus size: 7
51350030 TTAAATATTA
51350040 AATTTTT
1 AATTTTT
51350047 AAGCTTTTT
1 AA--TTTTT
*
51350056 -ATTTTAA
1 AATTTT-T
51350063 AATTTTT
1 AATTTTT
*
51350070 TATTTTT
1 AATTTTT
51350077 AATTTTT
1 AATTTTT
51350084 AATTTTT
1 AATTTTT
51350091 AATTTTT
1 AATTTTT
51350098 TTTTGAAGAT
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
6 4 0.09
7 28 0.65
8 6 0.14
9 5 0.12
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.69
Consensus pattern (7 bp):
AATTTTT
Found at i:51350077 original size:21 final size:21
Alignment explanation
Indices: 51350051--51350121 Score: 65
Period size: 21 Copynumber: 3.3 Consensus size: 21
51350041 ATTTTTAAGC
51350051 TTTTTATTTTAAAATTTTTTA
1 TTTTTATTTTAAAATTTTTTA
* *
51350072 TTTTTAATTTT-TAATTTTTAA
1 TTTTT-ATTTTAAAATTTTTTA
*
51350093 TTTTT-TTTTGAAGATTTTTATAA
1 TTTTTATTTT-AAAATTTTT-T-A
51350116 TTTTTA
1 TTTTTA
51350122 AATTAACATA
Statistics
Matches: 39, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
19 4 0.10
21 24 0.62
22 5 0.13
23 6 0.15
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (21 bp):
TTTTTATTTTAAAATTTTTTA
Found at i:51350118 original size:9 final size:8
Alignment explanation
Indices: 51350037--51350125 Score: 52
Period size: 7 Copynumber: 11.9 Consensus size: 8
51350027 ATATTAAATA
51350037 TTAAATTT
1 TTAAATTT
*
51350045 TTAAGCTTT
1 TTAA-ATTT
51350054 TT--ATTT
1 TTAAATTT
*
51350060 TAAAATTT
1 TTAAATTT
*
51350068 TT-TATTT
1 TTAAATTT
51350075 TT-AATTT
1 TTAAATTT
51350082 TT-AATTT
1 TTAAATTT
51350089 TT-AATTT
1 TTAAATTT
51350096 TT---TTT
1 TTAAATTT
*
51350101 TGAAGATTT
1 TTAA-ATTT
51350110 TTATAATTT
1 TTA-AATTT
51350119 TTAAATT
1 TTAAATT
51350126 AACATATAAA
Statistics
Matches: 65, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
5 4 0.06
6 4 0.06
7 26 0.40
8 13 0.20
9 17 0.26
10 1 0.02
ACGTcount: A:0.29, C:0.01, G:0.03, T:0.66
Consensus pattern (8 bp):
TTAAATTT
Found at i:51350517 original size:21 final size:21
Alignment explanation
Indices: 51350493--51350533 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
51350483 CTAAAAATTG
*
51350493 AACCCCAAATCTTAAACCATA
1 AACCCCAAATCCTAAACCATA
* *
51350514 AACCCTAAATCCTAGACCAT
1 AACCCCAAATCCTAAACCAT
51350534 GAACGTATAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.44, C:0.34, G:0.02, T:0.20
Consensus pattern (21 bp):
AACCCCAAATCCTAAACCATA
Found at i:51350692 original size:14 final size:14
Alignment explanation
Indices: 51350673--51350722 Score: 64
Period size: 14 Copynumber: 3.5 Consensus size: 14
51350663 AAAGGTTAGT
51350673 TTTAAGGCTTGGGG
1 TTTAAGGCTTGGGG
*
51350687 TTTAAGGGTTGGGG
1 TTTAAGGCTTGGGG
* *
51350701 TTTAGGGCTTGGAGT
1 TTTAAGGCTTGG-GG
51350716 TTTAAGG
1 TTTAAGG
51350723 GTTTATGATT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
14 23 0.77
15 7 0.23
ACGTcount: A:0.16, C:0.04, G:0.42, T:0.38
Consensus pattern (14 bp):
TTTAAGGCTTGGGG
Found at i:51351062 original size:6 final size:6
Alignment explanation
Indices: 51351043--51351077 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
51351033 TTTAGATATG
51351043 ATCAAA AT-AAA ATCAAA ATCAAA ATCAAA AT-AAA A
1 ATCAAA ATCAAA ATCAAA ATCAAA ATCAAA ATCAAA A
51351078 CCTTATTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
5 9 0.32
6 19 0.68
ACGTcount: A:0.71, C:0.11, G:0.00, T:0.17
Consensus pattern (6 bp):
ATCAAA
Found at i:51351068 original size:12 final size:11
Alignment explanation
Indices: 51351043--51351077 Score: 61
Period size: 11 Copynumber: 3.1 Consensus size: 11
51351033 TTTAGATATG
51351043 ATCAAAATAAA
1 ATCAAAATAAA
51351054 ATCAAAATCAAA
1 ATCAAAAT-AAA
51351066 ATCAAAATAAA
1 ATCAAAATAAA
51351077 A
1 A
51351078 CCTTATTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 12 0.52
12 11 0.48
ACGTcount: A:0.71, C:0.11, G:0.00, T:0.17
Consensus pattern (11 bp):
ATCAAAATAAA
Found at i:51351697 original size:40 final size:40
Alignment explanation
Indices: 51351653--51351802 Score: 174
Period size: 40 Copynumber: 3.7 Consensus size: 40
51351643 GGTCAACAGA
51351653 TAGCGGCACTTTCTTAAAAACGCCGCTAATGCTCGATCTT
1 TAGCGGCACTTTCTTAAAAACGCCGCTAATGCTCGATCTT
* *
51351693 TAGCGACACTTTCTTAAAAAGGCCGCTAATGCTCGATCTT
1 TAGCGGCACTTTCTTAAAAACGCCGCTAATGCTCGATCTT
** * * * *
51351733 TAGCGGCGTTTTTTTAGAAACGCCGCTAATGCTTGATTTT
1 TAGCGGCACTTTCTTAAAAACGCCGCTAATGCTCGATCTT
* ** **
51351773 TAGTGGCGTTTTCTATTCAAACGCCGCTAA
1 TAGCGGCACTTTCT-TAAAAACGCCGCTAA
51351803 AAACCTGTTT
Statistics
Matches: 95, Mismatches: 14, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
40 82 0.86
41 13 0.14
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.33
Consensus pattern (40 bp):
TAGCGGCACTTTCTTAAAAACGCCGCTAATGCTCGATCTT
Found at i:51354024 original size:11 final size:12
Alignment explanation
Indices: 51354002--51354039 Score: 51
Period size: 11 Copynumber: 3.2 Consensus size: 12
51353992 ATGTATTATA
51354002 TATATTTAAAAAT
1 TATA-TTAAAAAT
51354015 TATA-TAAAAAT
1 TATATTAAAAAT
*
51354026 AATATTAAAAAT
1 TATATTAAAAAT
51354038 TA
1 TA
51354040 ATACGGGCGA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
11 10 0.45
12 8 0.36
13 4 0.18
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (12 bp):
TATATTAAAAAT
Found at i:51359713 original size:27 final size:28
Alignment explanation
Indices: 51359629--51359753 Score: 173
Period size: 27 Copynumber: 4.5 Consensus size: 28
51359619 CATGAGATTG
* * * *
51359629 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
51359658 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
51359686 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
51359713 GCACTGAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
51359740 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
51359754 GACTTAATAT
Statistics
Matches: 91, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
27 51 0.56
28 22 0.24
29 18 0.20
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:51359765 original size:54 final size:55
Alignment explanation
Indices: 51359657--51359766 Score: 161
Period size: 54 Copynumber: 2.0 Consensus size: 55
51359647 TAAATTGTAC
* *
51359657 AGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGACTTGAATATAT
* *
51359712 AGCACTGAGTGTGCGAG-TTGATTATATAGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGC-GACTTGAATATAT
51359766 A
1 A
51359767 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
54 30 0.60
55 20 0.40
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGACTTGAATATAT
Found at i:51376512 original size:17 final size:17
Alignment explanation
Indices: 51376486--51376565 Score: 81
Period size: 17 Copynumber: 4.6 Consensus size: 17
51376476 TCCTCCTATT
*
51376486 TTTTTA-TTTAGTTTTA
1 TTTTTATTTTATTTTTA
51376502 TTTTTATTTTATTTTTA
1 TTTTTATTTTATTTTTA
*
51376519 TTTTTCTTTTGATTTTTA
1 TTTTTATTTT-ATTTTTA
* * *
51376537 TTTTCATTTCAATTTTA
1 TTTTTATTTTATTTTTA
51376554 TTATTTTATTTT
1 -T-TTTTATTTT
51376566 GAAAGACATA
Statistics
Matches: 52, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
16 6 0.12
17 24 0.46
18 15 0.29
19 7 0.13
ACGTcount: A:0.17, C:0.04, G:0.03, T:0.76
Consensus pattern (17 bp):
TTTTTATTTTATTTTTA
Found at i:51376535 original size:7 final size:6
Alignment explanation
Indices: 51376482--51376545 Score: 69
Period size: 6 Copynumber: 10.8 Consensus size: 6
51376472 TGAATCCTCC
* *
51376482 TATTTT T-TTATT TAGTTT TATTTT TA-TTT TATTTT TATTTT TCTTTT
1 TATTTT TATT-TT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT
* *
51376529 GATTTT TATTTT CATTT
1 TATTTT TATTTT TATTT
51376546 CAATTTTATT
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
5 7 0.15
6 40 0.83
7 1 0.02
ACGTcount: A:0.16, C:0.03, G:0.03, T:0.78
Consensus pattern (6 bp):
TATTTT
Found at i:51378736 original size:38 final size:38
Alignment explanation
Indices: 51378685--51378762 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
51378675 TAGGGAGGAA
51378685 GAAAGCAAATCCAAAGCCTATATAAACACCCTAAGTGT
1 GAAAGCAAATCCAAAGCCTATATAAACACCCTAAGTGT
51378723 GAAAGCAAATCCAAAGCCTATATAAACACCCTAAGTGT
1 GAAAGCAAATCCAAAGCCTATATAAACACCCTAAGTGT
51378761 GA
1 GA
51378763 CCTAGAAGGG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.45, C:0.23, G:0.14, T:0.18
Consensus pattern (38 bp):
GAAAGCAAATCCAAAGCCTATATAAACACCCTAAGTGT
Found at i:51379527 original size:13 final size:13
Alignment explanation
Indices: 51379511--51379535 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51379501 TTAAATCTGT
51379511 TAATTAGTTTAAA
1 TAATTAGTTTAAA
51379524 TAATTAGTTTAA
1 TAATTAGTTTAA
51379536 TAAAGAAACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TAATTAGTTTAAA
Found at i:51383771 original size:36 final size:37
Alignment explanation
Indices: 51383722--51383797 Score: 120
Period size: 36 Copynumber: 2.1 Consensus size: 37
51383712 ATTTTTTTAA
51383722 ATTAAAAAGATTAAAATATCTT-TGAATAAAATAATTT
1 ATTAAAAAGATTAAAATA-CTTCTGAATAAAATAATTT
*
51383759 ATTAAAAA-ATTAAAATACTTCTGAATAACATAATTT
1 ATTAAAAAGATTAAAATACTTCTGAATAAAATAATTT
51383795 ATT
1 ATT
51383798 TTAATTACAA
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
35 3 0.08
36 26 0.70
37 8 0.22
ACGTcount: A:0.53, C:0.05, G:0.04, T:0.38
Consensus pattern (37 bp):
ATTAAAAAGATTAAAATACTTCTGAATAAAATAATTT
Found at i:51386085 original size:6 final size:6
Alignment explanation
Indices: 51386074--51386100 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
51386064 AAAAGAAAAG
51386074 AAACAA AAACAA AAACAA AAACAA AAA
1 AAACAA AAACAA AAACAA AAACAA AAA
51386101 GGGAACTACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (6 bp):
AAACAA
Found at i:51390253 original size:184 final size:187
Alignment explanation
Indices: 51389907--51390283 Score: 424
Period size: 185 Copynumber: 2.0 Consensus size: 187
51389897 AAAAATTTTA
* *
51389907 GGGGAGTAAAATATTGAAGGAAAATAAATAAGGGAAGTAAAATTTTAGAGGGGAAACATTAAAAA
1 GGGGAGTAAAATATTGAAGGAAAATAAATAAGGGAAGTAAAATTTTAGAGAGAAAACATT-AAAA
* * * *
51389972 AAAATTGGGGGGAAGGGAGGGTTTGGGGTAGATGGGGGGTGGGATAATAGGGGAGTAAAAGTTTT
65 AAAATTGGGGGGAA--GAGGATTTAGGGTAGATGGGGGGTGGGATAAGAGGCGAGTAAAAGTTTT
* ** *
51390037 AGGGGAAAAGTGGGAGAGAGTAAAAATTTTGGGGGAAAA-TAAAAATTTTTGAGGGTTTG
128 AGGGGAAAAGTGGGAGAGAGTAAAAATTTTGGGGAAAAAGTAAAAAGGTTTGAAGGTTTG
* * * * * * * *
51390096 GGGGAGTAAAATTTTGAGGGAAAGTAAAT-GGGGGAGTACAATTTTGGAGAGAAAATATT-AAAA
1 GGGGAGTAAAATATTGAAGGAAAATAAATAAGGGAAGTAAAATTTTAGAGAGAAAACATTAAAAA
* * **
51390159 AAATTGGTGGGAA-ATGGATTTAGGGTAGATGAGGGGTTGGGATGGGAGGCGAG-AAAATGTTTT
66 AAATTGGGGGGAAGA-GGATTTAGGGTAGATG-GGGGGTGGGATAAGAGGCGAGTAAAA-GTTTT
* * * *
51390222 GGGGGGAAAGTGGGA-TGAGTAAAAGTTTTGGGGAAAAAGTAAAAAGGTTTGAAGGTTTG
128 AGGGGAAAAGTGGGAGAGAGTAAAAATTTTGGGGAAAAAGTAAAAAGGTTTGAAGGTTTG
51390281 GGG
1 GGG
51390284 TAAAAATGTA
Statistics
Matches: 158, Mismatches: 26, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
183 1 0.01
184 38 0.24
185 54 0.34
186 16 0.10
188 23 0.15
189 26 0.16
ACGTcount: A:0.37, C:0.01, G:0.38, T:0.24
Consensus pattern (187 bp):
GGGGAGTAAAATATTGAAGGAAAATAAATAAGGGAAGTAAAATTTTAGAGAGAAAACATTAAAAA
AAATTGGGGGGAAGAGGATTTAGGGTAGATGGGGGGTGGGATAAGAGGCGAGTAAAAGTTTTAGG
GGAAAAGTGGGAGAGAGTAAAAATTTTGGGGAAAAAGTAAAAAGGTTTGAAGGTTTG
Found at i:51390826 original size:21 final size:21
Alignment explanation
Indices: 51390795--51390852 Score: 91
Period size: 21 Copynumber: 2.8 Consensus size: 21
51390785 CCTTTAAAAC
51390795 AGGGT-ACACGCCCGTGTGGA
1 AGGGTAACACGCCCGTGTGGA
*
51390815 AGGGTAACACGCCCGTGTGGG
1 AGGGTAACACGCCCGTGTGGA
*
51390836 AGGGTAACACACCCGTG
1 AGGGTAACACGCCCGTG
51390853 CCCCACACCC
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
20 5 0.14
21 30 0.86
ACGTcount: A:0.22, C:0.26, G:0.38, T:0.14
Consensus pattern (21 bp):
AGGGTAACACGCCCGTGTGGA
Found at i:51391967 original size:47 final size:47
Alignment explanation
Indices: 51391892--51392248 Score: 276
Period size: 47 Copynumber: 7.6 Consensus size: 47
51391882 GGTTAAGTGT
*
51391892 CGATGTCATGTCCCAGACATGGTCTTACACTGGCTCAT-AGCTC-AAGT
1 CGATG-CATGTCCCAGACATGGTCTTACACTGGCT-ATCAGCTCTAAGC
* * * *
51391939 AGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCTTAGC
1 CGATG-CATGTCCCAGACATGGTCTTACACTGGCTATCAGCTCTAAGC
*
51391987 CGATGCATGTCCCAGACAT-GTCTTACACTGGCT-T-A-CGTCTGGAGGC
1 CGATGCATGTCCCAGACATGGTCTTACACTGGCTATCAGC-TCT--AAGC
* * * *
51392033 CGATGCATGTCCTAGACATGGTCTTACACTGACTATCATCTCTTAGC
1 CGATGCATGTCCCAGACATGGTCTTACACTGGCTATCAGCTCTAAGC
*
51392080 CGATGCATGTCCCAGACAT-GTCTTACACTGGCT-T-A-CGTCTGGAGGC
1 CGATGCATGTCCCAGACATGGTCTTACACTGGCTATCAGC-TCT--AAGC
* ** *
51392126 CGATGCATGTCCCAGACAT-GTCTTACACTAGCCCT-TG-TCTTAATGC
1 CGATGCATGTCCCAGACATGGTCTTACACTGGCTATCAGCTC-TAA-GC
** * * * ** * *
51392172 CGATGCCATGTCCTGGACATGGTCTTACACTGACTCTTATAATGT-GGC
1 CGATG-CATGTCCCAGACATGGTCTTACACTGGCTATCA-GCTCTAAGC
51392220 CGATGCATGTCCCAGACAT-GTCTTACACT
1 CGATGCATGTCCCAGACATGGTCTTACACT
51392249 TGCTCACACA
Statistics
Matches: 256, Mismatches: 33, Indels: 43
0.77 0.10 0.13
Matches are distributed among these distances:
43 2 0.01
44 8 0.03
45 3 0.01
46 100 0.39
47 109 0.43
48 27 0.11
49 4 0.02
50 2 0.01
51 1 0.00
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (47 bp):
CGATGCATGTCCCAGACATGGTCTTACACTGGCTATCAGCTCTAAGC
Found at i:51392058 original size:93 final size:93
Alignment explanation
Indices: 51391892--51392154 Score: 408
Period size: 93 Copynumber: 2.8 Consensus size: 93
51391882 GGTTAAGTGT
* * **
51391892 CGATGTCATGTCCCAGACATGGTCTTACACTGGCTCATA-G-CT-CAAGTAGATGCCATGTCCCA
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCT--TACGTCTGGAGGCCGATG-CATGTCCCA
51391954 GACATGGTCTTACACTGACTATCATCTCTTAGC
61 GACATGGTCTTACACTGACTATCATCTCTTAGC
*
51391987 CGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTGGAGGCCGATGCATGTCCTAGACAT
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTGGAGGCCGATGCATGTCCCAGACAT
51392052 GGTCTTACACTGACTATCATCTCTTAGC
66 GGTCTTACACTGACTATCATCTCTTAGC
51392080 CGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTGGAGGCCGATGCATGTCCCAGACAT
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTGGAGGCCGATGCATGTCCCAGACAT
51392145 -GTCTTACACT
66 GGTCTTACACT
51392155 AGCCCTTGTC
Statistics
Matches: 159, Mismatches: 6, Indels: 9
0.91 0.03 0.05
Matches are distributed among these distances:
91 2 0.01
92 11 0.07
93 121 0.76
94 20 0.13
95 5 0.03
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (93 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTGGAGGCCGATGCATGTCCCAGACAT
GGTCTTACACTGACTATCATCTCTTAGC
Found at i:51392098 original size:140 final size:138
Alignment explanation
Indices: 51391892--51392248 Score: 402
Period size: 140 Copynumber: 2.5 Consensus size: 138
51391882 GGTTAAGTGT
* * * * * **
51391892 CGATGTCATGTCCCAGACATGGTCTTACACTGGCTCATAGCTCAAGTAGATGCCATGTCCCAGAC
1 CGATGCCATGTCCTAGACATGGTCTTACACTGACT-ATATCTCTAGCCGATG-CATGTCCCAGAC
*
51391957 ATGGTCTTACACTGACTATCATC-TCT-TA-GCCGATGCATGTCCCAGACATGTCTTACACT-G-
64 AT-GTCTTACACTGACT-T-A-CGTCTGGAGGCCGATGCATGTCCCAGACATGTCTTACACTAGC
* *
51392017 GCTTACGTCTGGAGGC
125 CCTT--GTCTGAAGGC
51392033 CGATG-CATGTCCTAGACATGGTCTTACACTGACTATCATCTCTTAGCCGATGCATGTCCCAGAC
1 CGATGCCATGTCCTAGACATGGTCTTACACTGACTAT-ATCTC-TAGCCGATGCATGTCCCAGAC
*
51392097 ATGTCTTACACTGGCTTACGTCTGGAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCCCTT
64 ATGTCTTACACTGACTTACGTCTGGAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCCCTT
* *
51392162 GTCTTAATGC
129 GTCTGAAGGC
* * * * *
51392172 CGATGCCATGTCCTGGACATGGTCTTACACTGACTCTTATAATGTGGCCGATGCATGTCCCAGAC
1 CGATGCCATGTCCTAGACATGGTCTTACACTGACT-ATAT-CTCTAGCCGATGCATGTCCCAGAC
51392237 ATGTCTTACACT
64 ATGTCTTACACT
51392249 TGCTCACACA
Statistics
Matches: 189, Mismatches: 17, Indels: 21
0.83 0.07 0.09
Matches are distributed among these distances:
136 1 0.01
137 4 0.02
138 2 0.01
139 58 0.31
140 108 0.57
141 16 0.08
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (138 bp):
CGATGCCATGTCCTAGACATGGTCTTACACTGACTATATCTCTAGCCGATGCATGTCCCAGACAT
GTCTTACACTGACTTACGTCTGGAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCCCTTGT
CTGAAGGC
Found at i:51392182 original size:93 final size:92
Alignment explanation
Indices: 51391892--51392248 Score: 399
Period size: 93 Copynumber: 3.8 Consensus size: 92
51391882 GGTTAAGTGT
* * **
51391892 CGATGTCATGTCCCAGACATGGTCTTACACTGGCTCATAG-CTCAAGTAGATGCCATGTCCCAGA
1 CGATG-CATGTCCCAGACATGGTCTTACACTGGCT--TAGTCTGAGGCCGATG-CATGTCCCAGA
51391956 CATGGTCTTACACTGACTATCATCTCTTAGC
62 CATGGTCTTACACTGACTATCATCTCTTAGC
*
51391987 CGATGCATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTGGAGGCCGATGCATGTCCTAGACA
1 CGATGCATGTCCCAGACATGGTCTTACACTGGCTTA-GTCT-GAGGCCGATGCATGTCCCAGACA
51392051 TGGTCTTACACTGACTATCATCTCTTAGC
64 TGGTCTTACACTGACTATCATCTCTTAGC
51392080 CGATGCATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTGGAGGCCGATGCATGTCCCAGACA
1 CGATGCATGTCCCAGACATGGTCTTACACTGGCTTA-GTCT-GAGGCCGATGCATGTCCCAGACA
* * *
51392144 T-GTCTTACACTAGCCCT-T-GTCT-TAATGC
64 TGGTCTTACACT-G-ACTATCATCTCTTA-GC
** * * *
51392172 CGATGCCATGTCCTGGACATGGTCTTACACTGACTCTTA-TAATGTGGCCGATGCATGTCCCAGA
1 CGATG-CATGTCCCAGACATGGTCTTACACTG--GCTTAGT-CTGAGGCCGATGCATGTCCCAGA
51392236 CAT-GTCTTACACT
62 CATGGTCTTACACT
51392249 TGCTCACACA
Statistics
Matches: 237, Mismatches: 14, Indels: 23
0.86 0.05 0.08
Matches are distributed among these distances:
91 4 0.02
92 21 0.09
93 135 0.57
94 67 0.28
95 6 0.03
96 4 0.02
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (92 bp):
CGATGCATGTCCCAGACATGGTCTTACACTGGCTTAGTCTGAGGCCGATGCATGTCCCAGACATG
GTCTTACACTGACTATCATCTCTTAGC
Found at i:51398511 original size:21 final size:21
Alignment explanation
Indices: 51398487--51398532 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
51398477 AAAACAGGGC
51398487 ACACGCCAC-TATGGAAGGGTA
1 ACACGCC-CGTATGGAAGGGTA
* *
51398508 ACACGCCCGTGTGGGAGGGTA
1 ACACGCCCGTATGGAAGGGTA
51398529 ACAC
1 ACAC
51398533 ACACACCCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 1 0.05
21 21 0.95
ACGTcount: A:0.28, C:0.26, G:0.33, T:0.13
Consensus pattern (21 bp):
ACACGCCCGTATGGAAGGGTA
Found at i:51405309 original size:15 final size:14
Alignment explanation
Indices: 51405283--51405318 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
51405273 ACTATGCATG
*
51405283 CAAAATATAAAAGA
1 CAAAATACAAAAGA
51405297 CATAAATACAAAAGA
1 CA-AAATACAAAAGA
51405312 CAAAATA
1 CAAAATA
51405319 GTGAATTGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.69, C:0.11, G:0.06, T:0.14
Consensus pattern (14 bp):
CAAAATACAAAAGA
Found at i:51407782 original size:15 final size:16
Alignment explanation
Indices: 51407753--51407782 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
51407743 CAAACATGCT
51407753 TTAACACATTATCAAA
1 TTAACACATTATCAAA
51407769 TTAACACA-TATCAA
1 TTAACACATTATCAA
51407783 CAAGGCACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAACACATTATCAAA
Found at i:51408258 original size:15 final size:16
Alignment explanation
Indices: 51408238--51408268 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
51408228 CCTTCATTTG
51408238 CATTTCA-TTACTTTC
1 CATTTCATTTACTTTC
51408253 CATTTCATTTACTTTC
1 CATTTCATTTACTTTC
51408269 TTTAGCTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.19, C:0.26, G:0.00, T:0.55
Consensus pattern (16 bp):
CATTTCATTTACTTTC
Found at i:51412929 original size:13 final size:13
Alignment explanation
Indices: 51412911--51412935 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51412901 ATTTACAATC
51412911 TCAAGTTCAATTT
1 TCAAGTTCAATTT
51412924 TCAAGTTCAATT
1 TCAAGTTCAATT
51412936 ACCTATTAGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.08, T:0.44
Consensus pattern (13 bp):
TCAAGTTCAATTT
Found at i:51417511 original size:21 final size:23
Alignment explanation
Indices: 51417469--51417518 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 23
51417459 CGGATATTAA
*
51417469 TTTTATTATCTTTTAGAGTATTT
1 TTTTAATATCTTTTAGAGTATTT
*
51417492 TTTTAATATTTTTTA-A-TATTT
1 TTTTAATATCTTTTAGAGTATTT
*
51417513 TATTAA
1 TTTTAA
51417519 AGTGGCATAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 10 0.42
22 1 0.04
23 13 0.54
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.66
Consensus pattern (23 bp):
TTTTAATATCTTTTAGAGTATTT
Found at i:51422723 original size:36 final size:36
Alignment explanation
Indices: 51422676--51422749 Score: 130
Period size: 36 Copynumber: 2.1 Consensus size: 36
51422666 ACTACAGAAT
*
51422676 CTAGATAGGCTAAAGACGACCTGAAGGAACTTGATG
1 CTAGATAGGCTAAAGAAGACCTGAAGGAACTTGATG
*
51422712 CTAGATAGGCTAAAGAAGACTTGAAGGAACTTGATG
1 CTAGATAGGCTAAAGAAGACCTGAAGGAACTTGATG
51422748 CT
1 CT
51422750 CTACCTTCTC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.36, C:0.15, G:0.27, T:0.22
Consensus pattern (36 bp):
CTAGATAGGCTAAAGAAGACCTGAAGGAACTTGATG
Found at i:51426698 original size:45 final size:45
Alignment explanation
Indices: 51426634--51426722 Score: 142
Period size: 45 Copynumber: 2.0 Consensus size: 45
51426624 AAAACATGTG
51426634 TCACATACATCATGAACTCAGACCACAACTCAATCAGCTCAGATA
1 TCACATACATCATGAACTCAGACCACAACTCAATCAGCTCAGATA
* * * *
51426679 TCACATATATCATGAACTCAGACCACAATTCAATGAGTTCAGAT
1 TCACATACATCATGAACTCAGACCACAACTCAATCAGCTCAGAT
51426723 CACATAGTTC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.39, C:0.27, G:0.10, T:0.24
Consensus pattern (45 bp):
TCACATACATCATGAACTCAGACCACAACTCAATCAGCTCAGATA
Found at i:51431733 original size:40 final size:40
Alignment explanation
Indices: 51431656--51431873 Score: 334
Period size: 40 Copynumber: 5.5 Consensus size: 40
51431646 AAACTAAGTA
* *
51431656 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
51431695 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
51431735 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
51431775 CCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
51431815 CCTTCGGGGCTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
51431855 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
51431874 TTATCATCCG
Statistics
Matches: 166, Mismatches: 10, Indels: 5
0.92 0.06 0.03
Matches are distributed among these distances:
39 15 0.09
40 151 0.91
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:51439014 original size:52 final size:52
Alignment explanation
Indices: 51438957--51439059 Score: 188
Period size: 52 Copynumber: 2.0 Consensus size: 52
51438947 GATTAACCTA
*
51438957 GGGGTGAGGTTGTTGTACAGTCAGATTGGTTCCAATGTGTTGGGTGAACCAG
1 GGGGTGAGGTTGTTGTACAGTCAGATTGGTTCCAATGTGCTGGGTGAACCAG
*
51439009 GGGGTGAGGTTGTTGTACAGTCGGATTGGTTCCAATGTGCTGGGTGAACCA
1 GGGGTGAGGTTGTTGTACAGTCAGATTGGTTCCAATGTGCTGGGTGAACCA
51439060 TTCATTCATC
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.18, C:0.13, G:0.39, T:0.30
Consensus pattern (52 bp):
GGGGTGAGGTTGTTGTACAGTCAGATTGGTTCCAATGTGCTGGGTGAACCAG
Found at i:51446594 original size:18 final size:19
Alignment explanation
Indices: 51446573--51446608 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
51446563 AAGGGAATAG
51446573 AAGAGAGAAAG-TGAGTGC
1 AAGAGAGAAAGATGAGTGC
*
51446591 AAGAGAGAGAGATGAGTG
1 AAGAGAGAAAGATGAGTG
51446609 GGAATGAAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.44, C:0.03, G:0.42, T:0.11
Consensus pattern (19 bp):
AAGAGAGAAAGATGAGTGC
Found at i:51450541 original size:52 final size:52
Alignment explanation
Indices: 51450460--51450561 Score: 177
Period size: 52 Copynumber: 2.0 Consensus size: 52
51450450 GTTAAAGACA
* * *
51450460 AAAAGAGAATAATTAGCCGAAATTGCATTTGAGGTAAGTCCGTGTGATTACT
1 AAAAGAGAATAATTAGCCAAAATTCCATTTGAGGTAAGTCCGTATGATTACT
51450512 AAAAGAGAATAATTAGCCAAAATTCCATTTGAGGTAAGTCCGTATGATTA
1 AAAAGAGAATAATTAGCCAAAATTCCATTTGAGGTAAGTCCGTATGATTA
51450562 AATGAGCTTG
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 47 1.00
ACGTcount: A:0.39, C:0.12, G:0.21, T:0.28
Consensus pattern (52 bp):
AAAAGAGAATAATTAGCCAAAATTCCATTTGAGGTAAGTCCGTATGATTACT
Found at i:51451017 original size:46 final size:47
Alignment explanation
Indices: 51450915--51451232 Score: 199
Period size: 46 Copynumber: 6.7 Consensus size: 47
51450905 GTTACTTGAG
* * * *
51450915 AGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGACG-A
1 AGCCAGTGTAAGACCATGTCTGGGACAT-GCATCAGCATCGAGATGTA
* * *
51450962 GAGCTAGTGTAAGA-CATGTCTGGGGCATGCATCAGCCTCGAGATGTA
1 -AGCCAGTGTAAGACCATGTCTGGGACATGCATCAGCATCGAGATGTA
* *
51451009 AGCCAGTGTAAGA-CATGTCTGAGACATGCATCTG-ATACGAGATGT-
1 AGCCAGTGTAAGACCATGTCTGGGACATGCATCAGCAT-CGAGATGTA
* ** *
51451054 -GTCAGTGTAAGACCATGTCTGGGACATGGCATTGGCA-CGAATATGTGA
1 AGCCAGTGTAAGACCATGTCTGGGACAT-GCATCAGCATCG-AGATGT-A
* * * * * * ** **
51451102 GAGCTAGTGTAAGACCATGTCAGGGACATGGTATCGGCCTTGATTTCAA
1 -AGCCAGTGTAAGACCATGTCTGGGACAT-GCATCAGCATCGAGATGTA
* * *
51451151 TAGTCAGTATAAGACCATGTCTGGGACATGGCATC-G-ACTTGATGGATG--
1 -AGCCAGTGTAAGACCATGTCTGGGACAT-GCATCAGCA-TCGA--GATGTA
51451199 AGCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 AGCCAGTGTAAGACCATGTCTGGGACAT-GCATC
51451233 GACATTATAC
Statistics
Matches: 217, Mismatches: 39, Indels: 29
0.76 0.14 0.10
Matches are distributed among these distances:
44 11 0.05
45 16 0.07
46 61 0.28
47 46 0.21
48 17 0.08
49 30 0.14
50 35 0.16
51 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (47 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGCATCAGCATCGAGATGTA
Found at i:51451165 original size:99 final size:96
Alignment explanation
Indices: 51451054--51451233 Score: 247
Period size: 96 Copynumber: 1.8 Consensus size: 96
51451044 TACGAGATGT
* * *
51451054 GTCAGTGTAAGACCATGTCTGGGACATGGCATTGGCACGAAT-ATGTGA-GAGCTAGTGTAAGAC
1 GTCAGTATAAGACCATGTCTGGGACATGGCA-TCG-AC--ATGATG-GATGAGCCAGTGTAAGAC
*
51451117 CATGTCAGGGACATGGTATCGGCCTTGATTTCAATA
61 CATGTCAGGGACATGGCATCGGCCTTGATTTCAATA
*
51451153 GTCAGTATAAGACCATGTCTGGGACATGGCATCGACTTGATGGATGAGCCAGTGTAAGACCATGT
1 GTCAGTATAAGACCATGTCTGGGACATGGCATCGACATGATGGATGAGCCAGTGTAAGACCATGT
*
51451218 CTGGGACATGGCATCG
66 CAGGGACATGGCATCG
51451234 ACATTATACC
Statistics
Matches: 73, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
95 3 0.04
96 36 0.49
97 2 0.03
98 2 0.03
99 30 0.41
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (96 bp):
GTCAGTATAAGACCATGTCTGGGACATGGCATCGACATGATGGATGAGCCAGTGTAAGACCATGT
CAGGGACATGGCATCGGCCTTGATTTCAATA
Found at i:51462672 original size:22 final size:22
Alignment explanation
Indices: 51462630--51462672 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
51462620 GTGCCAAAGG
*
51462630 CACACGAGCGTGTCCCTATGTC
1 CACACGAGCGTGTACCTATGTC
51462652 CACACGAGCGTGTGACC-ATGT
1 CACACGAGCGTGT-ACCTATGT
51462673 TTTATGAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 17 0.89
23 2 0.11
ACGTcount: A:0.21, C:0.33, G:0.26, T:0.21
Consensus pattern (22 bp):
CACACGAGCGTGTACCTATGTC
Found at i:51482143 original size:40 final size:40
Alignment explanation
Indices: 51482087--51482292 Score: 263
Period size: 40 Copynumber: 5.2 Consensus size: 40
51482077 NNNNNNNNNN
*
51482087 CCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAA
1 CCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAA
51482127 CCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAA
1 CCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAA
*
51482167 CCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAA
1 CCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAA
* * * *
51482207 CCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAA
1 CCCGGATTTAATAACTCGCACGAATGCCTTCGGGA-CTTAA
* * * * * * *
51482247 TCCGGATATATTCACTTAGCAC-AAAGCCTTCGGGACTTAG
1 CCCGGATTTAATAAC-TCGCACGAATGCCTTCGGGACTTAA
51482287 CCCGGA
1 CCCGGA
51482293 CAGCATTCAC
Statistics
Matches: 147, Mismatches: 16, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
39 3 0.02
40 136 0.93
41 8 0.05
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (40 bp):
CCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAA
Found at i:51490098 original size:72 final size:78
Alignment explanation
Indices: 51489961--51490180 Score: 317
Period size: 72 Copynumber: 2.9 Consensus size: 78
51489951 TCCTCGTTCA
* * * * * *
51489961 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTAACCCGGATTT
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGATGCCTTCGGGACTAACCCGGATTT
51490026 AACAACTCGCACG
66 AACAACTCGCACG
51490039 AATGCCTTC-GGACTTAA-CC-GA-TTAA-AACTCGCACGATGCCTTC-GGACTAACCCGGATTT
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGATGCCTTCGGGACTAACCCGGATTT
*
51490098 AATAACTCGCACG
66 AACAACTCGCACG
51490111 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG-ATGCCTTCGGGAC-TAACCCGGAT
51490176 TTAAC
64 TTAAC
51490181 TCCAAGCTCG
Statistics
Matches: 126, Mismatches: 8, Indels: 14
0.85 0.05 0.09
Matches are distributed among these distances:
72 37 0.29
73 24 0.19
74 5 0.04
75 3 0.02
76 6 0.05
77 16 0.13
78 17 0.13
79 4 0.03
80 14 0.11
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.24
Consensus pattern (78 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGATGCCTTCGGGACTAACCCGGATTT
AACAACTCGCACG
Found at i:51490130 original size:112 final size:109
Alignment explanation
Indices: 51489961--51490275 Score: 352
Period size: 100 Copynumber: 2.9 Consensus size: 109
51489951 TCCTCGTTCA
* * *
51489961 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGAC-TAACCCGGAT
1 AATGCCTTC-GGAC-TAACCCGGATTTA-TAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
*
51490024 TTAACAACTCGCACGAATGCCTTCGGACTTAA-CC-GATTAAAACTCGC
63 TTAATAACTCGCACGAATGCCTTCGGACTTAACCCGGATT-AAACTC-C
51490071 ACGATGCCTTCGGACTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 A--ATGCCTTCGGACTAACCCGGATTT-ATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
*
51490136 TTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAACTCC
63 TTAATAACTCGCACGAATGCCTTC-GGACTTAACCCGGATTAAACTCC
51490184 AA-G-C-TCGGACT-ACCC-GA--T-TAA--CGCACGAATGCCTTCGGGACTTAACCCGGATTTA
1 AATGCCTTCGGACTAACCCGGATTTATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTA
* * * * *
51490239 GTATCTCGCACAAAGGCCTTCGGATCTTAATCCGGAT
66 ATAACTCGCACGAATGCCTTCGGA-CTTAACCCGGAT
51490276 ATATTCACTT
Statistics
Matches: 186, Mismatches: 10, Indels: 28
0.83 0.04 0.12
Matches are distributed among these distances:
99 3 0.02
100 62 0.33
102 3 0.02
104 1 0.01
106 2 0.01
107 4 0.02
108 7 0.04
109 1 0.01
110 21 0.11
111 20 0.11
112 41 0.22
113 10 0.05
114 7 0.04
115 4 0.02
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (109 bp):
AATGCCTTCGGACTAACCCGGATTTATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTA
ATAACTCGCACGAATGCCTTCGGACTTAACCCGGATTAAACTCC
Found at i:51490136 original size:40 final size:40
Alignment explanation
Indices: 51489961--51490179 Score: 314
Period size: 40 Copynumber: 5.7 Consensus size: 40
51489951 TCCTCGTTCA
* * * * *
51489961 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
51490000 AATGCCTTCGGGAC-TAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
51490039 AATGCCTTC-GGACTTAA-CC-GA-TTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
51490074 -ATGCCTTC-GGAC-TAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
51490111 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
51490151 AATGCCTTCGGGACTTAACCCGGATTTAA
1 AATGCCTTCGGGACTTAACCCGGATTTAA
51490180 CTCCAAGCTC
Statistics
Matches: 166, Mismatches: 5, Indels: 17
0.88 0.03 0.09
Matches are distributed among these distances:
33 3 0.02
34 14 0.08
35 12 0.07
36 8 0.05
37 12 0.07
38 33 0.20
39 30 0.18
40 54 0.33
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:51490260 original size:40 final size:40
Alignment explanation
Indices: 51490205--51490314 Score: 109
Period size: 40 Copynumber: 2.7 Consensus size: 40
51490195 ACCCGATTAA
* *
51490205 CGCACGAATGCCTTCGGGACTTAACCCGGATTTAGT-A-TCT
1 CGCAC-AAAGCCTTCGGGACTTAACCCGGATATAGTCACT-T
* *
51490245 CGCACAAAGGCCTTC-GGATCTTAATCCGGATATATTCACTT
1 CGCACAAA-GCCTTCGGGA-CTTAACCCGGATATAGTCACTT
* *
51490286 AGCACAAAGCCTTCGGGACTTAGCCCGGA
1 CGCACAAAGCCTTCGGGACTTAACCCGGA
51490315 CAGCATTCAA
Statistics
Matches: 58, Mismatches: 7, Indels: 10
0.77 0.09 0.13
Matches are distributed among these distances:
39 5 0.09
40 40 0.69
41 12 0.21
42 1 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CGCACAAAGCCTTCGGGACTTAACCCGGATATAGTCACTT
Found at i:51498822 original size:18 final size:19
Alignment explanation
Indices: 51498799--51498835 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
51498789 CGAGCCGGGT
51498799 TAATAAATAAATAA-ATAA
1 TAATAAATAAATAATATAA
*
51498817 TAATAAATACATAATATAA
1 TAATAAATAAATAATATAA
51498836 AAAATCGGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (19 bp):
TAATAAATAAATAATATAA
Found at i:51498823 original size:14 final size:14
Alignment explanation
Indices: 51498799--51498840 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
51498789 CGAGCCGGGT
51498799 TAATAAATAAATAAA
1 TAAT-AATAAATAAA
*
51498814 TAATAATAAATACA
1 TAATAATAAATAAA
51498828 TAAT-ATAAA-AAA
1 TAATAATAAATAAA
51498840 T
1 T
51498841 CGGCAATAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
12 3 0.12
13 5 0.20
14 13 0.52
15 4 0.16
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (14 bp):
TAATAATAAATAAA
Found at i:51501335 original size:40 final size:40
Alignment explanation
Indices: 51501291--51501518 Score: 343
Period size: 40 Copynumber: 5.7 Consensus size: 40
51501281 GCTACTTGCT
51501291 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
**
51501331 CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
51501371 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
51501411 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
51501451 CAAATGCCTTCAGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * *
51501490 CAAATACGTTCGGGACTTAGCCTGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
51501519 CATCCGAATA
Statistics
Matches: 171, Mismatches: 14, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
38 1 0.01
39 31 0.18
40 138 0.81
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:51505732 original size:24 final size:23
Alignment explanation
Indices: 51505704--51505760 Score: 62
Period size: 23 Copynumber: 2.4 Consensus size: 23
51505694 TCTTGTAAGG
*
51505704 GCTTACTGTTTTCAGCTCAT-TGGA
1 GCTTACTGTTTCCA-CTCATAT-GA
* *
51505728 GCTTACCGTTTCCACTCGTATGA
1 GCTTACTGTTTCCACTCATATGA
51505751 GCTTACTGTT
1 GCTTACTGTT
51505761 CATCAGCTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
23 15 0.54
24 13 0.46
ACGTcount: A:0.16, C:0.25, G:0.19, T:0.40
Consensus pattern (23 bp):
GCTTACTGTTTCCACTCATATGA
Found at i:51505926 original size:20 final size:20
Alignment explanation
Indices: 51505898--51505936 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
51505888 ATATGTGCTT
*
51505898 ATATGGATGAATTACTGTTG
1 ATATAGATGAATTACTGTTG
*
51505918 ATATAGATGCATTACTGTT
1 ATATAGATGAATTACTGTT
51505937 ATTACTGATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.41
Consensus pattern (20 bp):
ATATAGATGAATTACTGTTG
Found at i:51507781 original size:96 final size:96
Alignment explanation
Indices: 51507606--51507783 Score: 212
Period size: 96 Copynumber: 1.9 Consensus size: 96
51507596 AGGTCTCGTG
* * * * * * * *
51507606 TAAGACCATGTTTGGGACATGGCATTGGCATCGATATGAGACCCCGTATACGACCATATCTAAGA
1 TAAGACCATGTCTGGGACATGGCATCGACACCGATACGAGAACCCATATAAGACCATATCTAAGA
*
51507671 TATAGCATCAGCATCGAGATGAGGCCCTGTA
66 CATAGCATCAGCATCGAGATGAGGCCCTGTA
* * * *
51507702 TAAGACCATGTCTGGGACATGGCATCGACACCGATACGAGAATCCATGTAAGACCATGTCTAGGA
1 TAAGACCATGTCTGGGACATGGCATCGACACCGATACGAGAACCCATATAAGACCATATCTAAGA
* **
51507767 CATGGCATTGGCATCGA
66 CATAGCATCAGCATCGA
51507784 TATGTGTGTA
Statistics
Matches: 66, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
96 66 1.00
ACGTcount: A:0.30, C:0.22, G:0.25, T:0.22
Consensus pattern (96 bp):
TAAGACCATGTCTGGGACATGGCATCGACACCGATACGAGAACCCATATAAGACCATATCTAAGA
CATAGCATCAGCATCGAGATGAGGCCCTGTA
Found at i:51507785 original size:48 final size:47
Alignment explanation
Indices: 51507604--51507787 Score: 156
Period size: 48 Copynumber: 3.9 Consensus size: 47
51507594 TAAGGTCTCG
* * *
51507604 TGTAAGACCATGTTTGGGACATGGCATTGGCATCGATATGAGACCC-
1 TGTAAGACCATGTCTAGGACATGGCATCGGCATCGATATGAGACCCA
* * * * * * * *
51507650 CGTATACGACCATATCTAAGATATAGCATCAGCATCGAGATGAGGCCC-
1 TGTA-A-GACCATGTCTAGGACATGGCATCGGCATCGATATGAGACCCA
* * * * *
51507698 TGTATAAGACCATGTCTGGGACATGGCATCGACACCGATACGAGAATCCA
1 TG--TAAGACCATGTCTAGGACATGGCATCGGCATCGATATGAG-ACCCA
*
51507748 TGTAAGACCATGTCTAGGACATGGCATTGGCATCGATATG
1 TGTAAGACCATGTCTAGGACATGGCATCGGCATCGATATG
51507788 TGTGTAAGTA
Statistics
Matches: 103, Mismatches: 29, Indels: 10
0.73 0.20 0.07
Matches are distributed among these distances:
46 3 0.03
47 1 0.01
48 92 0.89
49 3 0.03
50 4 0.04
ACGTcount: A:0.30, C:0.22, G:0.25, T:0.23
Consensus pattern (47 bp):
TGTAAGACCATGTCTAGGACATGGCATCGGCATCGATATGAGACCCA
Found at i:51508167 original size:94 final size:96
Alignment explanation
Indices: 51507986--51508250 Score: 338
Period size: 94 Copynumber: 2.8 Consensus size: 96
51507976 TGAGATCCTG
* ** * *
51507986 TGTAAGACCATGTCTGGGACATGGCATCAACGTTGATATGTGAGCCAGTGTAATACCATATCTGG
1 TGTAAGACCATGTCTAGGACATGGCATCGGCGTTGATATGTGAGCCAGTGTAAGACCATGTCTGG
* *
51508051 GACATGGCATCTGCGTTGATATGTGAGCCAA
66 GACATGGCATCGGCGTTCATATGTGAGCCAA
51508082 TGTAAGA-C-TGTCTAGGACAT-GCTATCGGCGTTGATATGTGAGCCAGTGTAAGACCATGTCTG
1 TGTAAGACCATGTCTAGGACATGGC-ATCGGCGTTGATATGTGAGCCAGTGTAAGACCATGTCTG
* * *
51508144 GGACATGGCATCGGTGTTCATATGTGAGCTAG
65 GGACATGGCATCGGCGTTCATATGTGAGCCAA
* * ** * * *
51508176 TGTAAGACCATGTCTGGGACATGGCATTGGCCCTGATATATGTGCCAGTGTAAGACCATGTTTGG
1 TGTAAGACCATGTCTAGGACATGGCATCGGCGTTGATATGTGAGCCAGTGTAAGACCATGTCTGG
*
51508241 GACGTGGCAT
66 GACATGGCAT
51508251 TAGCATTGAT
Statistics
Matches: 147, Mismatches: 18, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
93 2 0.01
94 80 0.54
95 2 0.01
96 61 0.41
97 2 0.01
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (96 bp):
TGTAAGACCATGTCTAGGACATGGCATCGGCGTTGATATGTGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGGCGTTCATATGTGAGCCAA
Found at i:51508262 original size:48 final size:48
Alignment explanation
Indices: 51507985--51508250 Score: 349
Period size: 48 Copynumber: 5.6 Consensus size: 48
51507975 ATGAGATCCT
**
51507985 GTGTAAGACCATGTCTGGGACATGGCATCAACGTTGATATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA
* * *
51508033 GTGTAATACCATATCTGGGACATGGCATCTGCGTTGATATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA
* *
51508081 ATGTAAGA-C-TGTCTAGGACAT-GCTATCGGCGTTGATATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGC-ATCGGCGTTGATATGTGAGCCA
* * *
51508127 GTGTAAGACCATGTCTGGGACATGGCATCGGTGTTCATATGTGAGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA
* ** * *
51508175 GTGTAAGACCATGTCTGGGACATGGCATTGGCCCTGATATATGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA
* *
51508223 GTGTAAGACCATGTTTGGGACGTGGCAT
1 GTGTAAGACCATGTCTGGGACATGGCAT
51508251 TAGCATTGAT
Statistics
Matches: 190, Mismatches: 24, Indels: 8
0.86 0.11 0.04
Matches are distributed among these distances:
45 2 0.01
46 38 0.20
47 2 0.01
48 146 0.77
49 2 0.01
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA
Found at i:51516583 original size:28 final size:28
Alignment explanation
Indices: 51516533--51516623 Score: 121
Period size: 28 Copynumber: 3.2 Consensus size: 28
51516523 GTGACAGAGT
* *
51516533 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-AAAGATAATTTGTGGCAGTGC
*
51516562 CACCAGAAAAGATAATTTGTGGCAGGGC
1 CACCAGAAAAGATAATTTGTGGCAGTGC
*
51516590 CACCAGAATAGATAATTTGTGGCA-TAGC
1 CACCAGAAAAGATAATTTGTGGCAGT-GC
51516618 CACCAG
1 CACCAG
51516624 GACGCTTCCT
Statistics
Matches: 56, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
28 49 0.88
29 7 0.12
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.22
Consensus pattern (28 bp):
CACCAGAAAAGATAATTTGTGGCAGTGC
Found at i:51516772 original size:28 final size:28
Alignment explanation
Indices: 51516729--51516795 Score: 107
Period size: 28 Copynumber: 2.4 Consensus size: 28
51516719 AAATTAACCC
51516729 TAGGGGTATAAAGGTAATTTTGCACACA
1 TAGGGGTATAAAGGTAATTTTGCACACA
* * *
51516757 TAGGGGTATTATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCACACA
51516785 TAGGGGTATAA
1 TAGGGGTATAA
51516796 TAGTGCATCT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.33, C:0.07, G:0.27, T:0.33
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCACACA
Found at i:51519134 original size:20 final size:20
Alignment explanation
Indices: 51519109--51519152 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
51519099 AATGTTTGTG
51519109 AATGATGTTTATTGATCAAT
1 AATGATGTTTATTGATCAAT
*
51519129 AATGATGTTTATTGATCAGT
1 AATGATGTTTATTGATCAAT
51519149 AATG
1 AATG
51519153 CCGTGTAGCG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.34, C:0.05, G:0.18, T:0.43
Consensus pattern (20 bp):
AATGATGTTTATTGATCAAT
Found at i:51523378 original size:40 final size:39
Alignment explanation
Indices: 51523320--51523544 Score: 308
Period size: 40 Copynumber: 5.6 Consensus size: 39
51523310 TGGATGATAA
* * *
51523320 CCGGGCTAAGTCCTGAAGGCATTTGTGCTACTGACTA-ATT
1 CCGGGCTAAGTCC-GAAGGCATTTGTGCGAGTTACTATA-T
*
51523360 CCGGGCTAAGCTCCGAAGGCGTTTGTGCGAGTTACTATAT
1 CCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTATAT
*
51523400 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAC
1 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATAT
51523440 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATAT
* *
51523480 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTATAT
*
51523520 CTGGGCTAAGTCTCGAAGGCATTTG
1 CCGGGCTAAGTC-CGAAGGCATTTG
51523545 AGCAAGTAGT
Statistics
Matches: 169, Mismatches: 11, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
39 2 0.01
40 163 0.96
41 4 0.02
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.27
Consensus pattern (39 bp):
CCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:51523537 original size:120 final size:120
Alignment explanation
Indices: 51523320--51523544 Score: 346
Period size: 120 Copynumber: 1.9 Consensus size: 120
51523310 TGGATGATAA
* * *
51523320 CCGGGCTAAGTCCTGAAGGCATTTGTGCTACTGACTAATTCCGGGCTAAGCTCCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGACTGACTAATTCCGGGCTAAGCTCCGAAGGCATTTG
*
51523385 TGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAC
66 TGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAC
* *
51523440 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCCGGGCTAAGAC-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGACTGACTAAT-TCCGGGCTAAG-CTCCGAAGGCATT
* *
51523503 TGTGCGAGTTACTATAACTGGGCTAAGTCTCGAAGGCATTTG
64 TGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
51523545 AGCAAGTAGT
Statistics
Matches: 95, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
119 2 0.02
120 92 0.97
121 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.27
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGACTGACTAATTCCGGGCTAAGCTCCGAAGGCATTTG
TGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAC
Found at i:51523843 original size:22 final size:21
Alignment explanation
Indices: 51523802--51523845 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
51523792 GAATGTGCAT
51523802 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
51523824 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
51523846 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:51528433 original size:28 final size:28
Alignment explanation
Indices: 51528401--51528528 Score: 175
Period size: 29 Copynumber: 4.5 Consensus size: 28
51528391 ATAGTAAGTC
*
51528401 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
51528429 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
51528458 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
51528486 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
51528515 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51528529 CAATCTCATG
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 44 0.49
29 45 0.51
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:51528491 original size:57 final size:57
Alignment explanation
Indices: 51528400--51528528 Score: 188
Period size: 57 Copynumber: 2.3 Consensus size: 57
51528390 TATAGTAAGT
*
51528400 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACA-AATCAAAC
* * * * *
51528457 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
51528514 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
51528529 CAATCTCATG
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
Found at i:51534748 original size:40 final size:40
Alignment explanation
Indices: 51534509--51534733 Score: 339
Period size: 40 Copynumber: 5.6 Consensus size: 40
51534499 TGGATGATAA
* * *
51534509 CCGGGTTAAGTCCCGAAGGCATTTGTGCTAGTCACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
51534549 CTGGGCTAAG-CTCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTC-CCGAAGGCATTTGTGCGAGTTACTATAT
*
51534589 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
51534628 CTCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAT
1 C-CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
51534669 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
51534709 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
51534734 AGCAAGTAGT
Statistics
Matches: 169, Mismatches: 11, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
39 2 0.01
40 164 0.97
41 3 0.02
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:51535032 original size:22 final size:21
Alignment explanation
Indices: 51534991--51535034 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
51534981 GAATGTGCAT
51534991 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
51535013 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
51535035 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:51543672 original size:22 final size:22
Alignment explanation
Indices: 51543566--51543726 Score: 139
Period size: 22 Copynumber: 7.1 Consensus size: 22
51543556 TATTGATATA
*
51543566 TCAGCTCG-TAAGAGCTTGCTGTTT
1 TCAGCTCGAT-AGAGCTTACTG--T
* *
51543590 TCAGCTC-ATTGAAGCTTACCGTT
1 TCAGCTCGATAG-AGCTTACTG-T
* *
51543613 TCAACTC-ATATGAGCTTACTAT
1 TCAGCTCGATA-GAGCTTACTGT
* *
51543635 TCACACTCAATAGAGCTTACTGT
1 TCA-GCTCGATAGAGCTTACTGT
*
51543658 TTAGCTCGATAGAGCTTACTGT
1 TCAGCTCGATAGAGCTTACTGT
* *
51543680 TCAACTTGATAGAGCTTACTGT
1 TCAGCTCGATAGAGCTTACTGT
*
51543702 TCAGCTCAATAGAGCTTACTGT
1 TCAGCTCGATAGAGCTTACTGT
51543724 TCA
1 TCA
51543727 TCAGCTTAAG
Statistics
Matches: 115, Mismatches: 17, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
22 62 0.54
23 34 0.30
24 19 0.17
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.35
Consensus pattern (22 bp):
TCAGCTCGATAGAGCTTACTGT
Found at i:51543696 original size:44 final size:44
Alignment explanation
Indices: 51543602--51543726 Score: 153
Period size: 44 Copynumber: 2.8 Consensus size: 44
51543592 AGCTCATTGA
* * *
51543602 AGCTTACCGTTTCAACTCATATGAGCTTACTATTCACACTCAATAG
1 AGCTTACTGTTT-AGCTCATA-GAGCTTACTGTTCACACTCAATAG
**
51543648 AGCTTACTGTTTAGCTCGATAGAGCTTACTGTTCA-ACTTGATAG
1 AGCTTACTGTTTAGCTC-ATAGAGCTTACTGTTCACACTCAATAG
*
51543692 AGCTTACTGTTCAGCTCAATAGAGCTTACTGTTCA
1 AGCTTACTGTTTAGCTC-ATAGAGCTTACTGTTCA
51543727 TCAGCTTAAG
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
44 40 0.56
45 17 0.24
46 14 0.20
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.34
Consensus pattern (44 bp):
AGCTTACTGTTTAGCTCATAGAGCTTACTGTTCACACTCAATAG
Found at i:51543925 original size:20 final size:19
Alignment explanation
Indices: 51543900--51543977 Score: 75
Period size: 20 Copynumber: 3.9 Consensus size: 19
51543890 TGTTTATAGG
*
51543900 GATGAATTACTATTGATACA
1 GATGAACTACTATT-ATACA
* * *
51543920 GATGAATTACTGTTATTACT
1 GATGAACTACTATTA-TACA
*
51543940 GATAAACTACTATTTATACA
1 GATGAACTACTA-TTATACA
51543960 GATGAACTACTAGTTATA
1 GATGAACTACTA-TTATA
51543978 TGAATGAATT
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
19 1 0.02
20 44 0.92
21 3 0.06
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.37
Consensus pattern (19 bp):
GATGAACTACTATTATACA
Found at i:51543996 original size:40 final size:40
Alignment explanation
Indices: 51543900--51543999 Score: 116
Period size: 40 Copynumber: 2.5 Consensus size: 40
51543890 TGTTTATAGG
* *
51543900 GATGAATTACTATTGATACAGATGAATTACTGTTATTACT
1 GATGAATTACTATTTATACAGATGAACTACTGTTATTACT
* *
51543940 GATAAACTACTATTTATACAGATGAACTACTAGTTA-TA-T
1 GATGAATTACTATTTATACAGATGAACTACT-GTTATTACT
51543979 GAATGAATTAC-AGTTTATACA
1 G-ATGAATTACTA-TTTATACA
51544000 AATAGAAATG
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
39 3 0.06
40 44 0.86
41 4 0.08
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (40 bp):
GATGAATTACTATTTATACAGATGAACTACTGTTATTACT
Found at i:51548378 original size:15 final size:16
Alignment explanation
Indices: 51548360--51548389 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
51548350 GAAAGCTGAA
51548360 AATTT-ATTAAATGAC
1 AATTTAATTAAATGAC
51548375 AATTTAATTAAATGA
1 AATTTAATTAAATGA
51548390 AAAAGAACAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.50, C:0.03, G:0.07, T:0.40
Consensus pattern (16 bp):
AATTTAATTAAATGAC
Found at i:51550020 original size:29 final size:29
Alignment explanation
Indices: 51549978--51550054 Score: 145
Period size: 29 Copynumber: 2.7 Consensus size: 29
51549968 GAATAATTAT
*
51549978 CATGGGCCGAAGCCAAATCATCCGATATG
1 CATGGCCCGAAGCCAAATCATCCGATATG
51550007 CATGGCCCGAAGCCAAATCATCCGATATG
1 CATGGCCCGAAGCCAAATCATCCGATATG
51550036 CATGGCCCGAAGCCAAATC
1 CATGGCCCGAAGCCAAATC
51550055 GGGATAACTC
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 47 1.00
ACGTcount: A:0.31, C:0.31, G:0.22, T:0.16
Consensus pattern (29 bp):
CATGGCCCGAAGCCAAATCATCCGATATG
Found at i:51562563 original size:40 final size:40
Alignment explanation
Indices: 51562515--51562663 Score: 194
Period size: 40 Copynumber: 3.7 Consensus size: 40
51562505 GGATTTAGCT
51562515 GGATATAGCAACTCACACAAATGCCTTCGGGTCTTAGCCC
1 GGATATAGCAACTCACACAAATGCCTTCGGGTCTTAGCCC
* *
51562555 GGATATAGCAACTCGCACAAATGCCTTTGGGTCTTAGCCC
1 GGATATAGCAACTCACACAAATGCCTTCGGGTCTTAGCCC
* * * *
51562595 GGATATAATC-ACT-AGCATAAATGCCTTCGGGACATAGCCC
1 GGATAT-AGCAACTCA-CACAAATGCCTTCGGGTCTTAGCCC
* *
51562635 GGATATAGCAACTCGCACGAATGCCTTCG
1 GGATATAGCAACTCACACAAATGCCTTCG
51562664 ATCTTAGTCC
Statistics
Matches: 93, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 89 0.96
41 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
GGATATAGCAACTCACACAAATGCCTTCGGGTCTTAGCCC
Found at i:51567846 original size:47 final size:46
Alignment explanation
Indices: 51567776--51568038 Score: 168
Period size: 47 Copynumber: 5.7 Consensus size: 46
51567766 TTTGTCCGCC
* * * *
51567776 AGTGTAAGACCATGTCCGGGACATGGCATCGGCATCCAGACGAGGGGT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCAT-CAGATGAGAGCT
* * * *
51567824 AGTGTGAGA-CATGTCTGGGACATGTATCAGCCAT-ATTATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGCATC-GGCATCA-GATGAGAGCT
* *
51567870 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA-CAGAGATGAGTGCC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCATC--AGATGAGAGCT
* * *
51567918 AGAGTAAGA-CATGTCTGGGACATGCATCGGCCTCAACAGA-GATAGCT
1 AGTGTAAGACCATGTCTGGGACATGCATCGG---CATCAGATGAGAGCT
* * * * * *
51567965 AGTGTAAGA-CATATCTGGGACACGAATCGCCA--AGA-GTTGTGCT
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCATCAGATG-AGAGCT
*
51568008 AGTGTAAGA-CATGTCTGGGACACGGCATCGG
1 AGTGTAAGACCATGTCTGGGACA-TGCATCGG
51568039 TAATTTATCC
Statistics
Matches: 172, Mismatches: 30, Indels: 30
0.74 0.13 0.13
Matches are distributed among these distances:
42 4 0.02
43 24 0.14
44 7 0.04
45 1 0.01
46 25 0.15
47 77 0.45
48 30 0.17
49 3 0.02
50 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.31, T:0.21
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCATCAGATGAGAGCT
Found at i:51567937 original size:94 final size:94
Alignment explanation
Indices: 51567776--51568029 Score: 263
Period size: 94 Copynumber: 2.7 Consensus size: 94
51567766 TTTGTCCGCC
* * * * * *
51567776 AGTGTAAGACCATGTCCGGGACATGGCATCGGCATC-CAGACGAGGGGTAGTGTGAGACATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA-CAGAGATGAGTGCTAGTGTAAGACATGTCT
* **
51567840 GGGACATGTATCAGCCAT-ATTATGAG-AGCT
65 GGGACATGCATCAGCC-TCAACA-GAGAAGCT
* *
51567870 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGAGATGAGTGCCAGAGTAAGACATGTCTG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGAGATGAGTGCTAGTGTAAGACATGTCTG
*
51567935 GGACATGCATCGGCCTCAACAGAGATAGCT
66 GGACATGCATCAGCCTCAACAGAGA-AGCT
* * * * *
51567965 AGTGTAAGA-CATATCTGGGACA-CGAATCGCCA-AGAG-T-TGTGCTAGTGTAAGACATGTCTG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGAGATGAGTGCTAGTGTAAGACATGTCTG
51568025 GGACA
66 GGACA
51568030 CGGCATCGGT
Statistics
Matches: 137, Mismatches: 19, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
90 25 0.18
91 1 0.01
92 4 0.03
93 12 0.09
94 82 0.60
95 13 0.09
ACGTcount: A:0.29, C:0.19, G:0.31, T:0.21
Consensus pattern (94 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGAGATGAGTGCTAGTGTAAGACATGTCTG
GGACATGCATCAGCCTCAACAGAGAAGCT
Found at i:51573762 original size:40 final size:40
Alignment explanation
Indices: 51573717--51573939 Score: 263
Period size: 40 Copynumber: 5.6 Consensus size: 40
51573707 ACTTCGCGAG
* * *
51573717 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
51573757 GCCTTC-GGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
51573796 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
51573836 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
51573876 GCCTTCGGATCTTAGTCCGGCTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
* *
51573917 G-CTTCGGGACTTCGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
51573940 CATTCGAATA
Statistics
Matches: 155, Mismatches: 24, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
39 35 0.23
40 110 0.71
41 10 0.06
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:51582665 original size:13 final size:14
Alignment explanation
Indices: 51582639--51582667 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
51582629 ACTAACGATG
51582639 AATTAAACCATTAT
1 AATTAAACCATTAT
51582653 AATTAAA-CATTAT
1 AATTAAACCATTAT
51582666 AA
1 AA
51582668 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:51586481 original size:34 final size:34
Alignment explanation
Indices: 51586433--51586501 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
51586423 ATAAACGAAG
51586433 ATTGCTTCAAGCAAATCCATGGAGGCAAATTGTA
1 ATTGCTTCAAGCAAATCCATGGAGGCAAATTGTA
*
51586467 ATTGCTTCATGCAAATCCATGGAGGCAAATTGTA
1 ATTGCTTCAAGCAAATCCATGGAGGCAAATTGTA
51586501 A
1 A
51586502 GGAACAAGCA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (34 bp):
ATTGCTTCAAGCAAATCCATGGAGGCAAATTGTA
Found at i:51587776 original size:9 final size:9
Alignment explanation
Indices: 51587762--51588085 Score: 136
Period size: 9 Copynumber: 37.1 Consensus size: 9
51587752 TATGTATTAC
*
51587762 GTAAGTTAA
1 GTAAGTTAT
*
51587771 GTAAGTTTT
1 GTAAGTTAT
*
51587780 GTAAGTTTT
1 GTAAGTTAT
51587789 GTAAGTTAT
1 GTAAGTTAT
51587798 GTAAGTTAT
1 GTAAGTTAT
51587807 GTAAGTTAT
1 GTAAGTTAT
* *
51587816 GATATGATAT
1 G-TAAGTTAT
* *
51587826 -AAATTTAT
1 GTAAGTTAT
*
51587834 GTAAGGTAT
1 GTAAGTTAT
51587843 GTAAGTTAT
1 GTAAGTTAT
*
51587852 GTAAATTAT
1 GTAAGTTAT
* **
51587861 GATATGAAAT
1 G-TAAGTTAT
* *
51587871 AT-ATTTAT
1 GTAAGTTAT
* *
51587879 -TTA-TTAC
1 GTAAGTTAT
51587886 GTAAGTTAT
1 GTAAGTTAT
*
51587895 GTAAGTTAC
1 GTAAGTTAT
* *
51587904 AT-ATTTAT
1 GTAAGTTAT
51587912 GT-A-TTAT
1 GTAAGTTAT
* *
51587919 GAAAGTTTT
1 GTAAGTTAT
*
51587928 GTAAGTAAT
1 GTAAGTTAT
51587937 GTAAGTTAT
1 GTAAGTTAT
* *
51587946 GATATGATAT
1 G-TAAGTTAT
* *
51587956 -AAATTTAT
1 GTAAGTTAT
* *
51587964 ATAAGGTAT
1 GTAAGTTAT
*
51587973 GTAAGGTAT
1 GTAAGTTAT
51587982 GTAAGTTAT
1 GTAAGTTAT
*
51587991 GTAAATTAT
1 GTAAGTTAT
* **
51588000 GATATGAAAT
1 G-TAAGTTAT
* *
51588010 AT-ATTTAT
1 GTAAGTTAT
* *
51588018 -TTA-TTAC
1 GTAAGTTAT
51588025 GTAAGTTAT
1 GTAAGTTAT
51588034 GTAAGTTAT
1 GTAAGTTAT
* *
51588043 AT-ATTTAT
1 GTAAGTTAT
*
51588051 AT-A-TTAT
1 GTAAGTTAT
*
51588058 GTAAGTTTT
1 GTAAGTTAT
51588067 GTAAGTTAT
1 GTAAGTTAT
*
51588076 GTAACTTAT
1 GTAAGTTAT
51588085 G
1 G
51588086 ATATGATATA
Statistics
Matches: 232, Mismatches: 67, Indels: 32
0.70 0.20 0.10
Matches are distributed among these distances:
7 18 0.08
8 34 0.15
9 160 0.69
10 20 0.09
ACGTcount: A:0.36, C:0.01, G:0.17, T:0.45
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:51587917 original size:33 final size:33
Alignment explanation
Indices: 51587871--51587933 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
51587861 GATATGAAAT
* *
51587871 ATATTTATTTATTACGTAAGTTATGTAAGTTAC
1 ATATTTATGTATTACGAAAGTTATGTAAGTTAC
* *
51587904 ATATTTATGTATTATGAAAGTTTTGTAAGT
1 ATATTTATGTATTACGAAAGTTATGTAAGT
51587934 AATGTAAGTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.33, C:0.03, G:0.14, T:0.49
Consensus pattern (33 bp):
ATATTTATGTATTACGAAAGTTATGTAAGTTAC
Found at i:51588032 original size:139 final size:140
Alignment explanation
Indices: 51587782--51588101 Score: 502
Period size: 139 Copynumber: 2.3 Consensus size: 140
51587772 TAAGTTTTGT
* * * * **
51587782 AAGTTTTGTAAGTTATGTAAGTTATG-TAAGTTAT-GATATGATATAAATTTATGTAAGGTATGT
1 AAGTTTTGTAAGTTATGTAAGTTATGATATGATATAAAT-TTATATAAAGGTATGTAAGGTATGT
51587845 AAGTTATGTAAATTATGATATGAAATATATTTATTTATTACGTAAGTTATGTAAGTTACATATTT
65 AAGTTATGTAAATTATGATATGAAATATATTTATTTATTACGTAAGTTATGTAAGTTACATATTT
*
51587910 ATGTATTATGA
130 ATATATTATGA
*
51587921 AAGTTTTGTAAGTAATGTAAGTTATGATATGATATAAATTTATAT-AAGGTATGTAAGGTATGTA
1 AAGTTTTGTAAGTTATGTAAGTTATGATATGATATAAATTTATATAAAGGTATGTAAGGTATGTA
*
51587985 AGTTATGTAAATTATGATATGAAATATATTTATTTATTACGTAAGTTATGTAAGTTATATATTTA
66 AGTTATGTAAATTATGATATGAAATATATTTATTTATTACGTAAGTTATGTAAGTTACATATTTA
*
51588050 TATATTATGT
131 TATATTATGA
* *
51588060 AAGTTTTGTAAGTTATGTAACTTATGATATGATATATATTTA
1 AAGTTTTGTAAGTTATGTAAGTTATGATATGATATAAATTTA
51588102 ACATTAAGAT
Statistics
Matches: 166, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
139 153 0.92
140 11 0.07
141 2 0.01
ACGTcount: A:0.37, C:0.01, G:0.16, T:0.46
Consensus pattern (140 bp):
AAGTTTTGTAAGTTATGTAAGTTATGATATGATATAAATTTATATAAAGGTATGTAAGGTATGTA
AGTTATGTAAATTATGATATGAAATATATTTATTTATTACGTAAGTTATGTAAGTTACATATTTA
TATATTATGA
Found at i:51588045 original size:33 final size:33
Alignment explanation
Indices: 51588008--51588075 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 33
51587998 ATGATATGAA
*
51588008 ATATATTTATTTATTACGTAAGTTATGTAAGTT
1 ATATATTTATATATTACGTAAGTTATGTAAGTT
* *
51588041 ATATATTTATATATTATGTAAGTTTTGTAAGTT
1 ATATATTTATATATTACGTAAGTTATGTAAGTT
51588074 AT
1 AT
51588076 GTAACTTATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.34, C:0.01, G:0.12, T:0.53
Consensus pattern (33 bp):
ATATATTTATATATTACGTAAGTTATGTAAGTT
Found at i:51588076 original size:85 final size:88
Alignment explanation
Indices: 51587937--51588101 Score: 237
Period size: 85 Copynumber: 1.9 Consensus size: 88
51587927 TGTAAGTAAT
*
51587937 GTAAGTTATGATATGATATAAATTTATATAAGGTATGTAAGGTATGTAAGTTATGTAAATTATGA
1 GTAAGTTATGATAAGATATAAATTTATATAAGGTATGTAAGGTATGTAAGTTATGTAAATTATGA
51588002 TATGAAATATATTTATTTATTAC
66 TATGAAATATATTTATTTATTAC
* * * * * *
51588025 GTAAGTTATG-TAAGTTATATATTTATAT-A-TTATGTAAGTTTTGTAAGTTATGTAACTTATGA
1 GTAAGTTATGATAAGATATAAATTTATATAAGGTATGTAAGGTATGTAAGTTATGTAAATTATGA
*
51588087 TATGATATATATTTA
66 TATGAAATATATTTA
51588102 ACATTAAGAT
Statistics
Matches: 69, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
85 43 0.62
86 1 0.01
87 15 0.22
88 10 0.14
ACGTcount: A:0.38, C:0.01, G:0.15, T:0.46
Consensus pattern (88 bp):
GTAAGTTATGATAAGATATAAATTTATATAAGGTATGTAAGGTATGTAAGTTATGTAAATTATGA
TATGAAATATATTTATTTATTAC
Found at i:51591949 original size:46 final size:45
Alignment explanation
Indices: 51591882--51592053 Score: 179
Period size: 46 Copynumber: 3.7 Consensus size: 45
51591872 AACCCGCCCT
* *
51591882 TAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGTATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGC-TTCGTATCCA
* * *
51591928 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGT-TACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--GCTTCGTATCCA
** **
51591974 TTTCAAGT--ACTCGGACTCAACTCAACGAGTTCGAACATTCACATCCA
1 --T-AAGTGAACTCGGACTCAACTCAACGAGTTCGGGC-TTCGTATCCA
51592021 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
51592054 ATGCTCAACC
Statistics
Matches: 104, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
44 4 0.04
45 2 0.02
46 60 0.58
47 31 0.30
48 3 0.03
49 4 0.04
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCTTCGTATCCA
Found at i:51591997 original size:93 final size:93
Alignment explanation
Indices: 51591889--51592057 Score: 275
Period size: 93 Copynumber: 1.8 Consensus size: 93
51591879 CCTTAAGTGA
* ** * **
51591889 ACTCGGACTCAACTCAATGAGCTCGGGCGTTCGTATCCATAAGTGAACTCGGACTCAACTCAACG
1 ACTCGGACTCAACTCAACGAGCTCGAACATTCACATCCATAAGTGAACTCGGACTCAACTCAACG
51591954 AGTTCGGATGCCTAGTTACATTTCAAGT
66 AGTTCGGATGCCTAGTTACATTTCAAGT
*
51591982 ACTCGGACTCAACTCAACGAGTTCGAACATTCACATCCATAAGTGAACTCGGACTCAACTCAACG
1 ACTCGGACTCAACTCAACGAGCTCGAACATTCACATCCATAAGTGAACTCGGACTCAACTCAACG
51592047 AGTTCGGATGC
66 AGTTCGGATGC
51592058 TCAACCATCC
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (93 bp):
ACTCGGACTCAACTCAACGAGCTCGAACATTCACATCCATAAGTGAACTCGGACTCAACTCAACG
AGTTCGGATGCCTAGTTACATTTCAAGT
Found at i:51592073 original size:46 final size:45
Alignment explanation
Indices: 51591884--51592073 Score: 138
Period size: 46 Copynumber: 4.1 Consensus size: 45
51591874 CCCGCCCTTA
* * ** * **
51591884 AGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTC-GTATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACATCC-T
* *
51591929 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTACATTTCA
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACA-TCCT
* ***
51591979 AGT--ACTCGGACTCAACTCAACGAGTTCGAACATTC-ACATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACATCC-T
51592022 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAA-CATCCT
51592069 AGTGA
1 AGTGA
51592074 CATGTCACTT
Statistics
Matches: 112, Mismatches: 19, Indels: 26
0.71 0.12 0.17
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 3 0.03
45 1 0.01
46 63 0.56
47 28 0.25
48 6 0.05
49 3 0.03
50 1 0.01
51 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACATCCT
Found at i:51599042 original size:29 final size:30
Alignment explanation
Indices: 51598978--51599070 Score: 86
Period size: 29 Copynumber: 3.2 Consensus size: 30
51598968 CCCAGTCTCA
* * * *
51598978 TTTATATGGCCC-ATCAGGCCCAATTCACA
1 TTTATATAGCCCGTTCAGGCCCAAATCACC
* * *
51599007 TTCATATAG-TCTTTCAGGCCCAAATCACC
1 TTTATATAGCCCGTTCAGGCCCAAATCACC
*
51599036 TTTATATGGCCCGTT-AGGCCCAAATCACC
1 TTTATATAGCCCGTTCAGGCCCAAATCACC
51599065 -TTATAT
1 TTTATAT
51599071 TCATGCTCAC
Statistics
Matches: 52, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
28 7 0.13
29 42 0.81
30 3 0.06
ACGTcount: A:0.27, C:0.29, G:0.13, T:0.31
Consensus pattern (30 bp):
TTTATATAGCCCGTTCAGGCCCAAATCACC
Found at i:51605682 original size:22 final size:23
Alignment explanation
Indices: 51605647--51605691 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
51605637 TGTTTTCATT
* *
51605647 GAAAACCTTTATTA-AAATAAAA
1 GAAAACCTTAATTATAAAAAAAA
*
51605669 GAAAATCTTAATTATAAAAAAAA
1 GAAAACCTTAATTATAAAAAAAA
51605692 ACTCTTTTCA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.62, C:0.07, G:0.04, T:0.27
Consensus pattern (23 bp):
GAAAACCTTAATTATAAAAAAAA
Found at i:51606752 original size:28 final size:29
Alignment explanation
Indices: 51606721--51606783 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
51606711 GGCCCACTTC
* *
51606721 GCCCAATTT-TATTTATATGGCCCAGCAG
1 GCCCAATTTACATTCATATGGCCCAGCAG
**
51606749 GCCCAATTTACATTCATATGGCCCTTCAG
1 GCCCAATTTACATTCATATGGCCCAGCAG
51606778 GCCCAA
1 GCCCAA
51606784 ATCATCATTA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 9 0.30
29 21 0.70
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.29
Consensus pattern (29 bp):
GCCCAATTTACATTCATATGGCCCAGCAG
Found at i:51606796 original size:29 final size:28
Alignment explanation
Indices: 51606733--51606817 Score: 91
Period size: 29 Copynumber: 3.0 Consensus size: 28
51606723 CCAATTTTAT
** * *
51606733 TTATATGGCCCAGCAGGCCCAATTTACA
1 TTATATGGCCCTTCAGGCCCAAATCACA
51606761 TTCATATGGCCCTTCAGGCCCAAATCATCA
1 TT-ATATGGCCCTTCAGGCCCAAATCA-CA
*
51606791 TTATATGGCTCATT-AGGCCCAAATCAC
1 TTATATGGC-CCTTCAGGCCCAAATCAC
51606818 CTTCTATTCA
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
28 3 0.06
29 39 0.80
30 7 0.14
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.27
Consensus pattern (28 bp):
TTATATGGCCCTTCAGGCCCAAATCACA
Found at i:51613736 original size:43 final size:43
Alignment explanation
Indices: 51613682--51613774 Score: 132
Period size: 43 Copynumber: 2.2 Consensus size: 43
51613672 AATATTATCA
* * *
51613682 GGCTTCGGGCCTAGCACGCTATAATGCCGGTGAGATAAAATCG
1 GGCTTCAGGCCTAGCACGCTATAATGCCAGTGAAATAAAATCG
* * *
51613725 GGCTTCAGGCCTAGCAGGCTATAATGCCAGTGAAATGATATCG
1 GGCTTCAGGCCTAGCACGCTATAATGCCAGTGAAATAAAATCG
51613768 GGCTTCA
1 GGCTTCA
51613775 AGACTAGTAG
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.26, C:0.23, G:0.29, T:0.23
Consensus pattern (43 bp):
GGCTTCAGGCCTAGCACGCTATAATGCCAGTGAAATAAAATCG
Found at i:51618104 original size:61 final size:61
Alignment explanation
Indices: 51617989--51618105 Score: 153
Period size: 61 Copynumber: 1.9 Consensus size: 61
51617979 ATGTGAAATC
*
51617989 AACACGGCGTGGACTTCCGTACACGGGCAAACCACACGCCCATGTAGTTCTAGCAGGCTTT
1 AACACGGCGTGGACTTCCGTACACGGGCAAACCACACGCCCATGTACTTCTAGCAGGCTTT
* * * * * * * *
51618050 AACACGGCTTGGACTTCCTTACACGGGTAGACCACATGCCTATGTCCTTTTAGCAG
1 AACACGGCGTGGACTTCCGTACACGGGCAAACCACACGCCCATGTACTTCTAGCAG
51618106 AATCGAGCAT
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
61 47 1.00
ACGTcount: A:0.24, C:0.30, G:0.23, T:0.23
Consensus pattern (61 bp):
AACACGGCGTGGACTTCCGTACACGGGCAAACCACACGCCCATGTACTTCTAGCAGGCTTT
Found at i:51620078 original size:39 final size:39
Alignment explanation
Indices: 51620028--51620338 Score: 505
Period size: 39 Copynumber: 8.0 Consensus size: 39
51620018 ATTATATTAT
* *
51620028 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
51620067 CAGCACGAAGCCTGCGAGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
51620106 CAGCACGAAGCCTACGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* * *
51620145 CAGCACGAAGCCTGCGAGACTTTAGTCTGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
51620184 CAACACGAAGCCTGCGGGACTTTAGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
51620223 CAGGACGAAGCCTGCGGGACTTTAGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
51620262 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
51620301 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
51620339 TCAGTGTCTT
Statistics
Matches: 252, Mismatches: 20, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 252 1.00
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:51623826 original size:12 final size:12
Alignment explanation
Indices: 51623809--51623833 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
51623799 ACCACGAGGG
51623809 TCGATCACTACT
1 TCGATCACTACT
51623821 TCGATCACTACT
1 TCGATCACTACT
51623833 T
1 T
51623834 GGGAACAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.32, G:0.08, T:0.36
Consensus pattern (12 bp):
TCGATCACTACT
Found at i:51626286 original size:39 final size:39
Alignment explanation
Indices: 51626243--51626318 Score: 152
Period size: 39 Copynumber: 1.9 Consensus size: 39
51626233 CCTTCCATTC
51626243 ATTGACCAAATTTGGAAAGATTGTCAGGGCACATGTAGT
1 ATTGACCAAATTTGGAAAGATTGTCAGGGCACATGTAGT
51626282 ATTGACCAAATTTGGAAAGATTGTCAGGGCACATGTA
1 ATTGACCAAATTTGGAAAGATTGTCAGGGCACATGTA
51626319 CTACTGCTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.28
Consensus pattern (39 bp):
ATTGACCAAATTTGGAAAGATTGTCAGGGCACATGTAGT
Found at i:51633664 original size:26 final size:26
Alignment explanation
Indices: 51633626--51633683 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
51633616 CATGAAATTC
51633626 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
51633652 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
51633678 TTATCA
1 TTATCA
51633684 ATTTGTATCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:51639626 original size:61 final size:61
Alignment explanation
Indices: 51639511--51639627 Score: 144
Period size: 61 Copynumber: 1.9 Consensus size: 61
51639501 ATGTGAAATC
* * *
51639511 AACATGGCCTGGACTTCCATACACGGGCAAACCACACGCCCGTGTAGTTCTAGCAGGCTCT
1 AACACGGCCTGGACTTCCATACACGGGCAAACCACACGCCCATGTACTTCTAGCAGGCTCT
* * * * * * *
51639572 AACACGGCCTGGACTTCCTTACATGGGTAGACCACATGCCCATGTCCTTTTAGCAG
1 AACACGGCCTGGACTTCCATACACGGGCAAACCACACGCCCATGTACTTCTAGCAG
51639628 AATTGAGCAT
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
61 46 1.00
ACGTcount: A:0.24, C:0.32, G:0.22, T:0.22
Consensus pattern (61 bp):
AACACGGCCTGGACTTCCATACACGGGCAAACCACACGCCCATGTACTTCTAGCAGGCTCT
Found at i:51641425 original size:20 final size:20
Alignment explanation
Indices: 51641402--51641442 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
51641392 AAGCAGTAGC
51641402 TCATCCATATAAATAGTATT
1 TCATCCATATAAATAGTATT
51641422 TCATCCATATAAATAGTATT
1 TCATCCATATAAATAGTATT
51641442 T
1 T
51641443 ATGCTCATTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.39, C:0.15, G:0.05, T:0.41
Consensus pattern (20 bp):
TCATCCATATAAATAGTATT
Done.