Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 160 of 356
Found at i:51641710 original size:24 final size:24
Alignment explanation
Indices: 51641613--51641711 Score: 71
Period size: 24 Copynumber: 4.2 Consensus size: 24
51641603 AAGTTCTATT
* *
51641613 GAGCTG-AAACGGTAAGCTCTGAC
1 GAGCTGAAAACAGTAAGCTCTTAC
* * **
51641636 GAGTTGAGAACACCAAGCTCTTAC
1 GAGCTGAAAACAGTAAGCTCTTAC
* * *
51641660 GAGCT-AGAACGGTAAG-T-TTCAAT
1 GAGCTGAAAACAGTAAGCTCTT--AC
51641683 GAGCTGAAAACAGTAAGCTCTTAC
1 GAGCTGAAAACAGTAAGCTCTTAC
51641707 GAGCT
1 GAGCT
51641712 AATATATCGG
Statistics
Matches: 56, Mismatches: 14, Indels: 11
0.69 0.17 0.14
Matches are distributed among these distances:
21 2 0.04
22 1 0.02
23 19 0.34
24 31 0.55
25 1 0.02
26 2 0.04
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.21
Consensus pattern (24 bp):
GAGCTGAAAACAGTAAGCTCTTAC
Found at i:51643486 original size:24 final size:24
Alignment explanation
Indices: 51643459--51643508 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
51643449 TTTTTATGGT
51643459 CCTATAAAATGCAGACTTAGCTTC
1 CCTATAAAATGCAGACTTAGCTTC
*
51643483 CCTATAAAATGTAGACTTAGCTTC
1 CCTATAAAATGCAGACTTAGCTTC
51643507 CC
1 CC
51643509 CTTTTGATCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.32, C:0.26, G:0.12, T:0.30
Consensus pattern (24 bp):
CCTATAAAATGCAGACTTAGCTTC
Found at i:51645778 original size:226 final size:226
Alignment explanation
Indices: 51645384--51645835 Score: 895
Period size: 226 Copynumber: 2.0 Consensus size: 226
51645374 AATGACAATT
51645384 TTGTCAAAAATCACTTTACAAATGTTGTTTATATAAAAACAAGCATACATTTTCTATCACCAAAC
1 TTGTCAAAAATCACTTTACAAATGTTGTTTATATAAAAACAAGCATACATTTTCTATCACCAAAC
51645449 ATCAAAATACACATAGATTCATCGATGGAAAAACCCTAAATGTTTAACAATTTTGCAAAATAGTC
66 ATCAAAATACACATAGATTCATCGATGGAAAAACCCTAAATGTTTAACAATTTTGCAAAATAGTC
51645514 CCTGGGCTAGCTAGATTAAGCTGTAACGATCTCAAAAACATAGAAATTATTAAAAACAAGACAAA
131 CCTGGGCTAGCTAGATTAAGCTGTAACGATCTCAAAAACATAGAAATTATTAAAAACAAGACAAA
51645579 AACCATACTTAAATGAGCAACAATGCCTTGG
196 AACCATACTTAAATGAGCAACAATGCCTTGG
51645610 TTGTCAAAAATCACTTTACAAATGTTGTTTATATAAAAACAAGCATACATTTTCTATCACCAAAC
1 TTGTCAAAAATCACTTTACAAATGTTGTTTATATAAAAACAAGCATACATTTTCTATCACCAAAC
51645675 ATCAAAATACACATAGATTCATCGATGGAAAAACCCTAAATGTTTAACAATTTTGCAAAATAGTC
66 ATCAAAATACACATAGATTCATCGATGGAAAAACCCTAAATGTTTAACAATTTTGCAAAATAGTC
51645740 CCTGGGCTAGCTAGATTAAGCTGTAACGATCTCAAAAACATAGAAATTATTAAAAACAAGACAAA
131 CCTGGGCTAGCTAGATTAAGCTGTAACGATCTCAAAAACATAGAAATTATTAAAAACAAGACAAA
*
51645805 AATCATACTTAAATGAGCAACAATGCCTTGG
196 AACCATACTTAAATGAGCAACAATGCCTTGG
51645836 CCAAAACTCA
Statistics
Matches: 225, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
226 225 1.00
ACGTcount: A:0.43, C:0.18, G:0.12, T:0.27
Consensus pattern (226 bp):
TTGTCAAAAATCACTTTACAAATGTTGTTTATATAAAAACAAGCATACATTTTCTATCACCAAAC
ATCAAAATACACATAGATTCATCGATGGAAAAACCCTAAATGTTTAACAATTTTGCAAAATAGTC
CCTGGGCTAGCTAGATTAAGCTGTAACGATCTCAAAAACATAGAAATTATTAAAAACAAGACAAA
AACCATACTTAAATGAGCAACAATGCCTTGG
Found at i:51648889 original size:20 final size:20
Alignment explanation
Indices: 51648864--51648901 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
51648854 CATAGGCAAG
*
51648864 GTCAAAATTTTTTAGAGAGT
1 GTCAAAATTTTTAAGAGAGT
51648884 GTCAAAATTTTTAAGAGA
1 GTCAAAATTTTTAAGAGA
51648902 TTTAAATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.39, C:0.05, G:0.18, T:0.37
Consensus pattern (20 bp):
GTCAAAATTTTTAAGAGAGT
Found at i:51652073 original size:40 final size:40
Alignment explanation
Indices: 51652018--51652094 Score: 136
Period size: 40 Copynumber: 1.9 Consensus size: 40
51652008 AAATAAAAAA
51652018 GATTTTACAAAATTATCAATGGAGCAATTTTTTAATTAAT
1 GATTTTACAAAATTATCAATGGAGCAATTTTTTAATTAAT
* *
51652058 GATTTTACAAAATTATCAATGGGGTAATTTTTTAATT
1 GATTTTACAAAATTATCAATGGAGCAATTTTTTAATT
51652095 TCTCTAAACT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.38, C:0.06, G:0.12, T:0.44
Consensus pattern (40 bp):
GATTTTACAAAATTATCAATGGAGCAATTTTTTAATTAAT
Found at i:51654988 original size:24 final size:24
Alignment explanation
Indices: 51654957--51655005 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 24
51654947 TTTTTTAAAA
51654957 TTATTTATAATATTT-ATAT-TATG
1 TTATTTATAAT-TTTGATATATATG
51654980 TTATATTATAATTTTGATATATATG
1 TTAT-TTATAATTTTGATATATATG
51655005 T
1 T
51655006 ATGAGATGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 7 0.30
24 11 0.48
25 5 0.22
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.59
Consensus pattern (24 bp):
TTATTTATAATTTTGATATATATG
Found at i:51655417 original size:26 final size:26
Alignment explanation
Indices: 51655388--51655495 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
51655378 TGGTACAAAT
51655388 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
51655414 TGATAGTGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
51655440 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
51655466 TAATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
51655492 TGAT
1 TGAT
51655496 GGGCATTTCA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:51657148 original size:27 final size:26
Alignment explanation
Indices: 51657108--51657248 Score: 183
Period size: 27 Copynumber: 5.2 Consensus size: 26
51657098 AGGAAGCATC
*
51657108 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
51657135 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
51657162 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
51657189 TTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
51657216 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACATTATCTG-AT
51657243 CTGGTG
1 CTGGTG
51657249 ACTTCATCAC
Statistics
Matches: 100, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
26 10 0.10
27 88 0.88
28 2 0.02
ACGTcount: A:0.17, C:0.23, G:0.24, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:51657194 original size:54 final size:53
Alignment explanation
Indices: 51657108--51657248 Score: 228
Period size: 54 Copynumber: 2.6 Consensus size: 53
51657098 AGGAAGCATC
51657108 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
*
51657162 CTGGTGGCTATGCCACGATTATCTGATTTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
51657216 CTGGTGGCTCTGCCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTG
51657249 ACTTCATCAC
Statistics
Matches: 81, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
53 7 0.09
54 74 0.91
ACGTcount: A:0.17, C:0.23, G:0.24, T:0.35
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:51663441 original size:26 final size:25
Alignment explanation
Indices: 51663402--51663509 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 25
51663392 TGGTACAAAT
51663402 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAAT-GGTTAGGTAAATGTTCCA
*
51663428 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGG-TTAGGTAAATGTTCCA
*
51663454 TGATAATGGGTTAGGTAAATGCTCCA
1 TGATAAT-GGTTAGGTAAATGTTCCA
51663480 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGG-TTAGGTAAATGTTCCA
51663506 TGAT
1 TGAT
51663510 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
25 4 0.05
26 69 0.92
27 2 0.03
ACGTcount: A:0.33, C:0.08, G:0.23, T:0.35
Consensus pattern (25 bp):
TGATAATGGTTAGGTAAATGTTCCA
Found at i:51663480 original size:52 final size:52
Alignment explanation
Indices: 51663402--51663509 Score: 180
Period size: 52 Copynumber: 2.1 Consensus size: 52
51663392 TGGTACAAAT
*
51663402 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATAGGTTAGGTAAATGCTCCATGATAATGGATTAGGTAAATATTCCA
* * *
51663454 TGATAATGGGTTAGGTAAATGCTCCATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGCTCCATGATAATGGATTAGGTAAATATTCCA
51663506 TGAT
1 TGAT
51663510 GGGCATTTCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.33, C:0.08, G:0.23, T:0.35
Consensus pattern (52 bp):
TGATAATAGGTTAGGTAAATGCTCCATGATAATGGATTAGGTAAATATTCCA
Found at i:51665162 original size:27 final size:26
Alignment explanation
Indices: 51665122--51665261 Score: 172
Period size: 27 Copynumber: 5.2 Consensus size: 26
51665112 AGGAAGCGTC
*
51665122 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
51665149 CTGGTGGCTCTGCCACATATATATGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
51665176 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
51665203 TTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
51665230 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACATTATCTG-AT
51665257 CTGGT
1 CTGGT
51665262 TACTTTGTCA
Statistics
Matches: 97, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
26 10 0.10
27 85 0.88
28 2 0.02
ACGTcount: A:0.18, C:0.23, G:0.24, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:51665208 original size:54 final size:53
Alignment explanation
Indices: 51665122--51665261 Score: 217
Period size: 54 Copynumber: 2.6 Consensus size: 53
51665112 AGGAAGCGTC
51665122 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATATGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATATGTT
* *
51665176 CTGGTGGCTATGCCACGATTATCTGATTTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATATGTT
* *
51665230 CTGGTGGCTCTGCCACAATATCTGTATCTGGT
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGT
51665262 TACTTTGTCA
Statistics
Matches: 79, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 7 0.09
54 72 0.91
ACGTcount: A:0.18, C:0.23, G:0.24, T:0.36
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATATGTT
Found at i:51665273 original size:27 final size:26
Alignment explanation
Indices: 51665122--51665280 Score: 140
Period size: 27 Copynumber: 5.9 Consensus size: 26
51665112 AGGAAGCGTC
* * *
51665122 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGACTCTGCCACAA-TATCTGTT
* *
51665149 CTGGTGGCTCTGCCACATATATATGTT
1 CTGGTGACTCTGCCACA-ATATCTGTT
* * *
51665176 CTGGTGGCTATGCCACGATTATCTGATT
1 CTGGTGACTCTGCCAC-AATATCTG-TT
*
51665204 -TGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGACTCTGCCACA-ATATCTGTT
*
51665230 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGACTCTGCCACAATATCTGT-T
* * *
51665257 CTGGTTACTTTGTCACAATATCTG
1 CTGGTGACTCTGCCACAATATCTG
51665281 GCAGCCTCGC
Statistics
Matches: 114, Mismatches: 12, Indels: 12
0.83 0.09 0.09
Matches are distributed among these distances:
26 11 0.10
27 99 0.87
28 4 0.04
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (26 bp):
CTGGTGACTCTGCCACAATATCTGTT
Found at i:51676140 original size:48 final size:48
Alignment explanation
Indices: 51676060--51676180 Score: 152
Period size: 48 Copynumber: 2.5 Consensus size: 48
51676050 GTCAAGTCCT
* ** * *
51676060 AGACATAGTCTTACACGAAATCACATATCGATGCCAATGCTATATCCC
1 AGACATAGTCTTACATGGGATCACATACCGATGCCAATGCCATATCCC
* * * * *
51676108 ATATATGGTCTTACTTGGGATCACATACCGATGCCAATGCCATGTCCC
1 AGACATAGTCTTACATGGGATCACATACCGATGCCAATGCCATATCCC
51676156 AGACATAGTCTTACATGGGATCACA
1 AGACATAGTCTTACATGGGATCACA
51676181 ATGCCATGGC
Statistics
Matches: 59, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
48 59 1.00
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (48 bp):
AGACATAGTCTTACATGGGATCACATACCGATGCCAATGCCATATCCC
Found at i:51676222 original size:37 final size:37
Alignment explanation
Indices: 51676142--51676242 Score: 105
Period size: 37 Copynumber: 2.7 Consensus size: 37
51676132 ATACCGATGC
* * *
51676142 CAATGCCATGTCCCAGAC-ATAGTCTTACATGGGATCA
1 CAATGCCATGGCCCAG-CTATGGTCTTACATGGCATCA
* *
51676179 CAATGCCATGGCCCAGCTATGGTCTTACATGTCATTA
1 CAATGCCATGGCCCAGCTATGGTCTTACATGGCATCA
* * * *
51676216 CGATGCCATAGTCCTGCTATGGTCTTA
1 CAATGCCATGGCCCAGCTATGGTCTTA
51676243 TACGTACTCA
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
36 1 0.02
37 53 0.98
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.29
Consensus pattern (37 bp):
CAATGCCATGGCCCAGCTATGGTCTTACATGGCATCA
Found at i:51681666 original size:44 final size:42
Alignment explanation
Indices: 51681569--51681717 Score: 144
Period size: 44 Copynumber: 3.5 Consensus size: 42
51681559 GGTGCTTTGA
* * *
51681569 ATATCTGCACACTTAGTGCTACAACAATTAGCCGAAGCTAGAACG
1 ATATC-GCACACTTAGTGCCAC-TCAATTAGCCGAAGCTAG-TCG
51681614 AT-TCCGCACACTTAGTGCCATCTCAATTAGCCGAAGCTAAGTCG
1 ATAT-CGCACACTTAGTGCCA-CTCAATTAGCCGAAGCT-AGTCG
* **
51681658 GTATCGCACACTTAGTG-C-CTC-ATATAGCCGAAGCTAGTTT
1 ATATCGCACACTTAGTGCCACTCAAT-TAGCCGAAGCTAGTCG
*
51681698 AAATCGCACACTTAGTGCCA
1 ATATCGCACACTTAGTGCCA
51681718 AATACTATTG
Statistics
Matches: 89, Mismatches: 8, Indels: 17
0.78 0.07 0.15
Matches are distributed among these distances:
40 20 0.22
41 15 0.17
43 1 0.01
44 46 0.52
45 7 0.08
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (42 bp):
ATATCGCACACTTAGTGCCACTCAATTAGCCGAAGCTAGTCG
Found at i:51689920 original size:47 final size:47
Alignment explanation
Indices: 51689866--51690272 Score: 611
Period size: 47 Copynumber: 8.6 Consensus size: 47
51689856 TATTTGAATA
* *
51689866 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
51689913 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
51689962 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
51690009 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
51690058 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
51690105 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
51690152 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
51690199 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
51690246 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
51690273 TCCCGAAGGG
Statistics
Matches: 341, Mismatches: 13, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 245 0.72
48 1 0.00
49 94 0.28
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:51690155 original size:94 final size:95
Alignment explanation
Indices: 51689866--51690272 Score: 615
Period size: 96 Copynumber: 4.3 Consensus size: 95
51689856 TATTTGAATA
* *
51689866 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG-ATATA
* *
51689931 TATGTGATAAGGCCTAATGGCCGATGTGATG
65 TATGTGATAAGGCCGAATGGCCAATGTGATG
* *
51689962 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG-ATATA
* *
51690027 TATGTGATAAGGCCTAATGGCCGATGTGATG
65 TATGTGATAAGGCCGAATGGCCAATGTGATG
*
51690058 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG-TGTA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGATATA
*
51690121 TGTGTGATAAGGCCGAATGGCCAATGTGATG
65 TATGTGATAAGGCCGAATGGCCAATGTGATG
* *
51690152 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG-TATA
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGATATA
51690215 TATGTGATAAGGCCGAATGGCCAATGTGATG
65 TATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
51690246 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
51690273 TCCCGAAGGG
Statistics
Matches: 292, Mismatches: 15, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
93 2 0.01
94 137 0.47
95 1 0.00
96 151 0.52
97 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (95 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGATATAT
ATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:51692766 original size:38 final size:38
Alignment explanation
Indices: 51692702--51692776 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
51692692 AATCCGAGTT
*
51692702 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
51692740 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
51692777 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:51692894 original size:40 final size:40
Alignment explanation
Indices: 51692834--51693070 Score: 303
Period size: 40 Copynumber: 5.9 Consensus size: 40
51692824 CTCGATGATG
* *
51692834 ATCCGGGCTAAGTCCAGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
* ** * *
51692874 ATCCGTGCTAAACCCCGAAGAGCATTCATGCTATTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
*
51692914 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
* * *
51692954 ATCCAGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
* ** * *
51692994 ATCCGTGCTAAACCCCGAAGAGCATTCATGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
* * *
51693034 ATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
51693071 CGTGTATTCG
Statistics
Matches: 168, Mismatches: 29, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 168 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
Found at i:51693052 original size:120 final size:119
Alignment explanation
Indices: 51692829--51693070 Score: 387
Period size: 120 Copynumber: 2.0 Consensus size: 119
51692819 AAGGTCTCGA
*
51692829 TGATGATCCGGGCTAAGTCCAGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCGAAG
1 TGATGATCCAGGCTAAGTCCAGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCGAAG
* * *
51692894 AGCATTCATGCTATTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAG
66 AGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCAATCATGCTAG
51692948 TGATGTATCCAGGCTAAGTTCC-GAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCGA
1 TGATG-ATCCAGGCTAAG-TCCAGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCGA
* * * *
51693012 AGAGCATTCATGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGG
64 AGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCAATCATGCTAG
51693068 TGA
1 TGA
51693071 CGTGTATTCG
Statistics
Matches: 113, Mismatches: 8, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
119 5 0.04
120 105 0.93
121 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (119 bp):
TGATGATCCAGGCTAAGTCCAGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCGAAG
AGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCAATCATGCTAG
Found at i:51694467 original size:85 final size:85
Alignment explanation
Indices: 51694324--51694502 Score: 340
Period size: 85 Copynumber: 2.1 Consensus size: 85
51694314 GGCCGGCCAT
51694324 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
51694389 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
51694409 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
*
51694474 GTTAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
51694494 GGGCATGGG
1 GAGCATGGG
51694503 CAATAAAATA
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.27
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:51694493 original size:41 final size:41
Alignment explanation
Indices: 51694363--51694493 Score: 92
Period size: 46 Copynumber: 3.1 Consensus size: 41
51694353 AAAACATGTC
*
51694363 ATAAACATGTTGGGGTAGTGCATTATGTAAGGATTAATAAA
1 ATAAACATGTTGGGGTAGTGCATTATGTTAGGATTAATAAA
* * ** * *
51694404 ATAAAGA-GCAT-GGGT-G-GACAAGATGTTATGG-CTAAAAACA
1 ATAAACATG-TTGGGGTAGTG-CATTATGTTA-GGATTAATAA-A
51694444 TGTCATAAACATGTTGGGGTAGTGCATTATGTTAGGATTAATAAA
1 ----ATAAACATGTTGGGGTAGTGCATTATGTTAGGATTAATAAA
51694489 ATAAA
1 ATAAA
51694494 GGGCATGGGC
Statistics
Matches: 64, Mismatches: 13, Indels: 26
0.62 0.13 0.25
Matches are distributed among these distances:
38 1 0.02
39 13 0.20
40 8 0.12
41 12 0.19
44 7 0.11
45 8 0.12
46 14 0.22
47 1 0.02
ACGTcount: A:0.40, C:0.07, G:0.24, T:0.29
Consensus pattern (41 bp):
ATAAACATGTTGGGGTAGTGCATTATGTTAGGATTAATAAA
Found at i:51695820 original size:47 final size:47
Alignment explanation
Indices: 51695766--51696219 Score: 646
Period size: 47 Copynumber: 9.6 Consensus size: 47
51695756 TATTTGAATA
* *
51695766 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
51695813 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
51695862 AATGTGAAAGTGTATATATGCGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
51695909 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
51695958 AATGTGCACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTG-AAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
51696005 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
51696052 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
51696099 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
51696146 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
51696193 GATGTGGAAGCGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
51696220 TCCCGAAGGG
Statistics
Matches: 374, Mismatches: 26, Indels: 14
0.90 0.06 0.03
Matches are distributed among these distances:
46 2 0.01
47 281 0.75
49 89 0.24
50 2 0.01
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:51698265 original size:45 final size:45
Alignment explanation
Indices: 51698204--51698291 Score: 149
Period size: 45 Copynumber: 2.0 Consensus size: 45
51698194 CCAAAACATG
*
51698204 TGTCACATACATCATGAACTCAGACTACAACTCAATGAGCTCACA
1 TGTCACATACATCATGAACTCAGACCACAACTCAATGAGCTCACA
* *
51698249 TGTCACATATATCATGAACTCAGACCATAACTCAATGAGCTCA
1 TGTCACATACATCATGAACTCAGACCACAACTCAATGAGCTCA
51698292 TATTTCAAGT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.38, C:0.27, G:0.11, T:0.24
Consensus pattern (45 bp):
TGTCACATACATCATGAACTCAGACCACAACTCAATGAGCTCACA
Found at i:51720132 original size:39 final size:40
Alignment explanation
Indices: 51720078--51720294 Score: 325
Period size: 40 Copynumber: 5.5 Consensus size: 40
51720068 CAAACCAGTA
* *
51720078 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
51720117 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
51720156 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
51720196 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
51720236 CCTTCGGGGCTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
51720276 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
51720295 TTATCATCCG
Statistics
Matches: 167, Mismatches: 8, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 54 0.32
40 113 0.68
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:51733861 original size:30 final size:30
Alignment explanation
Indices: 51733827--51733885 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
51733817 TCCCGAGCCT
*
51733827 AGGGGCAAAAGTGTAAATATGCAAAAGTTG
1 AGGGGCAAAAGTATAAATATGCAAAAGTTG
* * *
51733857 AGGGGCAAAATTATAATTTTGCAAAAGTT
1 AGGGGCAAAAGTATAAATATGCAAAAGTT
51733886 TGAGTTAAGG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.42, C:0.07, G:0.25, T:0.25
Consensus pattern (30 bp):
AGGGGCAAAAGTATAAATATGCAAAAGTTG
Found at i:51737823 original size:50 final size:50
Alignment explanation
Indices: 51737768--51737866 Score: 153
Period size: 50 Copynumber: 2.0 Consensus size: 50
51737758 TATGGCATTG
* *
51737768 ATATGAGATCCCATGTAAAACCATGTATGGGACATGGTATTGGCATCGAC
1 ATATGAGATCCCATGTAAAACCATGTATGGAACATGGCATTGGCATCGAC
* * *
51737818 ATATGAGATTCCATGTAAGACCATGTTTGGAACATGGCATTGGCATCGA
1 ATATGAGATCCCATGTAAAACCATGTATGGAACATGGCATTGGCATCGA
51737867 GTGGTGATCA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 44 1.00
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.27
Consensus pattern (50 bp):
ATATGAGATCCCATGTAAAACCATGTATGGAACATGGCATTGGCATCGAC
Found at i:51737903 original size:48 final size:48
Alignment explanation
Indices: 51737693--51737910 Score: 157
Period size: 48 Copynumber: 4.6 Consensus size: 48
51737683 AGATCCCGTA
** * * *
51737693 TAAGACCATATCTGGGATATGGCATCAGAATCAGTATGTG-TTATCATG
1 TAAGACCATATCTGGGATATGGCATTGGCATCAGTATGAGATCA-CATG
*
51737741 TAAGACCATATCTGGGATATGGCATT-G----A-TATGAGATCCCATG
1 TAAGACCATATCTGGGATATGGCATTGGCATCAGTATGAGATCACATG
* * * * * *
51737783 TAAAACCATGTATGGGACATGGTATTGGCATCGACATATGAGATTC-CATG
1 TAAGACCATATCTGGGATATGGCATTGGCATC-A-GTATGAGA-TCACATG
* * * * * *
51737833 TAAGACCATGTTTGGAACATGGCATTGGCATCGAGT-GGTGATCACATG
1 TAAGACCATATCTGGGATATGGCATTGGCATC-AGTATGAGATCACATG
*
51737881 TAAGACCATATCTGGGATATGGCGTTGGCA
1 TAAGACCATATCTGGGATATGGCATTGGCA
51737911 ACTTATTATG
Statistics
Matches: 138, Mismatches: 21, Indels: 22
0.76 0.12 0.12
Matches are distributed among these distances:
42 30 0.22
43 3 0.02
47 3 0.02
48 58 0.42
49 1 0.01
50 41 0.30
51 2 0.01
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (48 bp):
TAAGACCATATCTGGGATATGGCATTGGCATCAGTATGAGATCACATG
Found at i:51744716 original size:15 final size:16
Alignment explanation
Indices: 51744693--51744727 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
51744683 ATTAGTTTAA
*
51744693 ATTTGATAA-TATTTT
1 ATTTAATAAGTATTTT
51744708 ATTTAATAAGTATTTT
1 ATTTAATAAGTATTTT
51744724 ATTT
1 ATTT
51744728 TTAATAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (16 bp):
ATTTAATAAGTATTTT
Found at i:51745440 original size:25 final size:24
Alignment explanation
Indices: 51745392--51745449 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
51745382 ATTTTTCTCC
* * *
51745392 TAAATTTTTATTTTATTTAATTATT
1 TAAATTTTCAATTTATTGAATTA-T
*
51745417 TAAATTTTCAATTTATTGAGTTAT
1 TAAATTTTCAATTTATTGAATTAT
51745441 TAATATTTT
1 TAA-ATTTT
51745450 ATACTAATTA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 4 0.14
25 24 0.86
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.62
Consensus pattern (24 bp):
TAAATTTTCAATTTATTGAATTAT
Found at i:51750063 original size:10 final size:10
Alignment explanation
Indices: 51750050--51750082 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
51750040 TTTAAAAAGT
51750050 ATTAATTTAA
1 ATTAATTTAA
51750060 ATTAATTTAA
1 ATTAATTTAA
*
51750070 A-AAATTTAA
1 ATTAATTTAA
51750079 ATTA
1 ATTA
51750083 TAAAATACAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
9 8 0.40
10 12 0.60
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (10 bp):
ATTAATTTAA
Found at i:51750081 original size:25 final size:27
Alignment explanation
Indices: 51750034--51750086 Score: 67
Period size: 25 Copynumber: 2.0 Consensus size: 27
51750024 TTGTAAATTC
*
51750034 ATTATATTTAAAAAGTATTAATT-TAA
1 ATTATATTTAAAAAATATTAATTATAA
51750060 ATTA-ATTTAAAAAAT-TTAAATTATAA
1 ATTATATTTAAAAAATATT-AATTATAA
51750086 A
1 A
51750087 ATACAATAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 2 0.08
25 14 0.58
26 8 0.33
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (27 bp):
ATTATATTTAAAAAATATTAATTATAA
Found at i:51750823 original size:3 final size:3
Alignment explanation
Indices: 51750817--51750842 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
51750807 CTTTTTTTCT
51750817 TAC TAC TAC TAC TAC TAC TAC TAC TA
1 TAC TAC TAC TAC TAC TAC TAC TAC TA
51750843 AGCTTTTTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.31, G:0.00, T:0.35
Consensus pattern (3 bp):
TAC
Found at i:51756938 original size:40 final size:40
Alignment explanation
Indices: 51756883--51756963 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
51756873 TGGTTTCAGA
51756883 CCACAAATCTGAGTTAGAAAAATATTTTAATATTAATTTC
1 CCACAAATCTGAGTTAGAAAAATATTTTAATATTAATTTC
51756923 CCACAAATCTGAGTTAGAAAAATATTTTAATATTAATTTC
1 CCACAAATCTGAGTTAGAAAAATATTTTAATATTAATTTC
51756963 C
1 C
51756964 ATGTATTTGA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.42, C:0.14, G:0.07, T:0.37
Consensus pattern (40 bp):
CCACAAATCTGAGTTAGAAAAATATTTTAATATTAATTTC
Found at i:51759621 original size:23 final size:23
Alignment explanation
Indices: 51759595--51759647 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 23
51759585 CACTCATAAA
51759595 TTCTTTTAC-TTTTCAAGTTCTTT
1 TTCTTTT-CGTTTTCAAGTTCTTT
* * **
51759618 TTCTATTCGTTTTGATTTTCTTT
1 TTCTTTTCGTTTTCAAGTTCTTT
51759641 TTCTTTT
1 TTCTTTT
51759648 TTTTTGTTGC
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
22 1 0.04
23 23 0.96
ACGTcount: A:0.09, C:0.15, G:0.06, T:0.70
Consensus pattern (23 bp):
TTCTTTTCGTTTTCAAGTTCTTT
Found at i:51768743 original size:39 final size:40
Alignment explanation
Indices: 51768642--51768865 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
51768632 TCGAATGATG
* * *
51768642 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
51768681 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
51768722 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
51768761 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
51768800 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
51768839 AACCGGGATATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
51768866 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
39 75 0.45
40 80 0.48
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:51768879 original size:40 final size:40
Alignment explanation
Indices: 51768695--51768872 Score: 150
Period size: 39 Copynumber: 4.5 Consensus size: 40
51768685 GGACTAAGAT
** * *
51768695 CCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGCTAAG-C
1 CCGAAGGCATTTGAACGAGTTACTATA-ACCGGGATAAGTC
* ** * *
51768734 CCGAAGGCATTGGTGCGAGTTACTA-ATTCCGGGCTAAG-C
1 CCGAAGGCATTTGAACGAGTTACTATA-ACCGGGATAAGTC
* ** *
51768773 CCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGTTAAGTC
1 CCGAAGGCATTTGAACGAGTTACTATAA-CCGGGATAAGTC
** *
51768813 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGATATGTC
1 CCGAAGGCATTTGAACGAGTTACTATAACCGGGATAAGTC
51768853 CCGAAGGCATTTGAACGAGT
1 CCGAAGGCATTTGAACGAGT
51768873 AGCTATATCC
Statistics
Matches: 128, Mismatches: 8, Indels: 5
0.91 0.06 0.04
Matches are distributed among these distances:
39 73 0.57
40 53 0.41
41 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTTGAACGAGTTACTATAACCGGGATAAGTC
Found at i:51768888 original size:79 final size:78
Alignment explanation
Indices: 51768695--51768865 Score: 238
Period size: 78 Copynumber: 2.2 Consensus size: 78
51768685 GGACTAAGAT
*
51768695 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA
1 CCGAAGGCATTTGTGCGAGTTACTAA-TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTA
* *
51768759 ATTCCGGGCTAAGC
65 ATACCGGGATAAGC
* *
51768773 CCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-
1 CCGAAGGCATTTGTGCGAGTTACT-AATCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTA
*
51768837 ATAACCGGGATATGTC
65 AT-ACCGGGATAAG-C
51768853 CCGAAGGCATTTG
1 CCGAAGGCATTTG
51768866 AACGAGTAGC
Statistics
Matches: 82, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
78 35 0.43
79 34 0.41
80 13 0.16
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGTTACTAATCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAA
TACCGGGATAAGC
Found at i:51768896 original size:79 final size:79
Alignment explanation
Indices: 51768695--51768898 Score: 209
Period size: 79 Copynumber: 2.6 Consensus size: 79
51768685 GGACTAAGAT
* ** * * *
51768695 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCT-AAGCCCGAAGGCATTGGTGCGAGTTACTA
1 CCGAAGGCATTGGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTGGTGCGAGTTACTA
* *
51768759 ATTCCGGGCTAAGC
66 ATACCGGGATAAGC
** * *
51768773 CCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-
1 CCGAAGGCATTGGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTGGTGCGAGTTACTA
*
51768837 ATAACCGGGATATGTC
66 AT-ACCGGGATAAG-C
* * *
51768853 CCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTGGAACGAGTTA-CTAAATCCGGGTTAAATCCCGAAGG
51768899 TACGTGATTC
Statistics
Matches: 107, Mismatches: 15, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
78 34 0.32
79 49 0.46
80 24 0.22
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTGGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTGGTGCGAGTTACTA
ATACCGGGATAAGC
Found at i:51772515 original size:119 final size:120
Alignment explanation
Indices: 51772333--51772555 Score: 283
Period size: 119 Copynumber: 1.9 Consensus size: 120
51772323 TCCTCGTTCA
*
51772333 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
51772398 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTACTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTACTAACTCGCACC
* ** * **
51772453 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATTTCGTACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
51772515 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
51772556 CACCATTCAA
Statistics
Matches: 88, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
118 4 0.05
119 64 0.73
120 20 0.23
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTACTAACTCGCACC
Found at i:51772555 original size:40 final size:40
Alignment explanation
Indices: 51772331--51772555 Score: 260
Period size: 40 Copynumber: 5.7 Consensus size: 40
51772321 GCTCCTCGTT
* *
51772331 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
51772371 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
51772411 CAAATGCCTTCGGGACTTAACCCGGATTTACTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* ** *
51772451 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATTTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
51772490 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
51772531 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
51772556 CACCATTCAA
Statistics
Matches: 158, Mismatches: 21, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
38 2 0.01
39 28 0.18
40 117 0.74
41 11 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:51780512 original size:39 final size:40
Alignment explanation
Indices: 51780347--51780571 Score: 260
Period size: 40 Copynumber: 5.7 Consensus size: 40
51780337 GCTCCTCGTT
* *
51780347 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
51780387 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
51780427 CAAATGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * * *
51780467 CCAATGCCTTCGGG-CTTAGCCCGGAGTTAGTATCTCGTA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
51780506 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
51780547 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
51780572 CACCATTCAA
Statistics
Matches: 161, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 116 0.72
41 12 0.07
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:51780555 original size:119 final size:120
Alignment explanation
Indices: 51780349--51780571 Score: 283
Period size: 119 Copynumber: 1.9 Consensus size: 120
51780339 TCCTCGTTCA
*
51780349 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* * *
51780414 TTAGTAACTCGCACAAATGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * * **
51780469 AATGCCTTCGGG-CTTAGCCCGGAGT-TAGTATCTCGTACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGG-GTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
51780531 ATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
64 ATATAGTAAC-TAGCACAAATGCCTTCGGGACTTAACCCGGA
51780572 CACCATTCAA
Statistics
Matches: 88, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
118 3 0.03
119 64 0.73
120 21 0.24
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:51800238 original size:41 final size:41
Alignment explanation
Indices: 51800193--51800416 Score: 285
Period size: 41 Copynumber: 5.5 Consensus size: 41
51800183 TTAGTGATAT
* *
51800193 TCAGGCTT-TATGCCTAGCAGGCTTTATGCTGGTGAATTATA
1 TCAGGCTTAT-TGCCTAGCAGGCTTTATGCCGGTGTATTATA
* *
51800234 TCAGGCTTATTGCCTAGCAGGCTTTATGCCAGTGAATTATA
1 TCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTATA
*
51800275 TCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTATT
1 TCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTATA
* *
51800316 TCAGGCTTATTGCCTAGCAGGCTGTATGCCGGTGTATTATT
1 TCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTATA
* * * *
51800357 TCAGGCCTATTGCCTAGCAAGCTCTT-TGTCAGTGTATTATA
1 TCAGGCTTATTGCCTAGCAGGCT-TTATGCCGGTGTATTATA
51800398 -CTAGGCTT-TATGCCTAGCA
1 TC-AGGCTTAT-TGCCTAGCA
51800417 AATTTTATGT
Statistics
Matches: 166, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
40 2 0.01
41 162 0.98
42 2 0.01
ACGTcount: A:0.21, C:0.20, G:0.23, T:0.36
Consensus pattern (41 bp):
TCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTATA
Found at i:51800412 original size:123 final size:123
Alignment explanation
Indices: 51800192--51800416 Score: 314
Period size: 123 Copynumber: 1.8 Consensus size: 123
51800182 ATTAGTGATA
* * * *
51800192 TTCAGGCTTTATGCCTAGCAGGCTTTATGCTGGTGAATTATATCAGGCTTATTGCCTAGCAGGCT
1 TTCAGGCTTTATGCCTAGCAGGCTGTATGCCGGTGAATTATATCAGGCCTATTGCCTAGCAAGCT
51800257 TTATGCCAGTGAATTATATCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTAT
66 TTATGCCAGTGAATTATATCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTAT
* *
51800315 TTCAGGC-TTATTGCCTAGCAGGCTGTATGCCGGTGTATTATTTCAGGCCTATTGCCTAGCAAGC
1 TTCAGGCTTTA-TGCCTAGCAGGCTGTATGCCGGTGAATTATATCAGGCCTATTGCCTAGCAAGC
* *
51800379 TCTT-TGTCAGTGTATTATA-CTAGGCTT-TATGCCTAGCA
65 T-TTATGCCAGTGAATTATATC-AGGCTTAT-TGCCTAGCA
51800417 AATTTTATGT
Statistics
Matches: 90, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
122 5 0.06
123 83 0.92
124 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.36
Consensus pattern (123 bp):
TTCAGGCTTTATGCCTAGCAGGCTGTATGCCGGTGAATTATATCAGGCCTATTGCCTAGCAAGCT
TTATGCCAGTGAATTATATCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTAT
Found at i:51818483 original size:45 final size:45
Alignment explanation
Indices: 51818360--51818520 Score: 182
Period size: 45 Copynumber: 3.6 Consensus size: 45
51818350 GTTATACACC
* ** * * *
51818360 AAGATGAGTAAGACCACATTTGAAATATGTTATGGTATCATGATA
1 AAGATGAGTAAGACCATAGCTAAAAGATGTTATGGCATCATGATA
* * *
51818405 AAGATGAGTAAGA-TATAGCTAAAAAATGCTATGGCATCATGATA
1 AAGATGAGTAAGACCATAGCTAAAAGATGTTATGGCATCATGATA
*
51818449 AAGATGAGTACGACCATAGCTAAAAGATGTTATGGCATCATGATA
1 AAGATGAGTAAGACCATAGCTAAAAGATGTTATGGCATCATGATA
* * *
51818494 TAA-ATGACTAAGGCCATAGCTGAAAGA
1 -AAGATGAGTAAGACCATAGCTAAAAGA
51818521 CGCTATGGGC
Statistics
Matches: 98, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
44 35 0.36
45 61 0.62
46 2 0.02
ACGTcount: A:0.42, C:0.11, G:0.21, T:0.25
Consensus pattern (45 bp):
AAGATGAGTAAGACCATAGCTAAAAGATGTTATGGCATCATGATA
Found at i:51821713 original size:20 final size:20
Alignment explanation
Indices: 51821670--51821713 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
51821660 TCCTAATTTT
* *
51821670 ATTTGATTCCAATCAATTTT
1 ATTTGATTCCAATCAAATTG
**
51821690 ATTTGATTTTAATCAAATTG
1 ATTTGATTCCAATCAAATTG
51821710 ATTT
1 ATTT
51821714 AATTGCTCAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.32, C:0.09, G:0.07, T:0.52
Consensus pattern (20 bp):
ATTTGATTCCAATCAAATTG
Found at i:51822186 original size:22 final size:23
Alignment explanation
Indices: 51822161--51822210 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 23
51822151 AATTTATTAT
51822161 TTTATTTTATTT-TATATAAATA
1 TTTATTTTATTTATATATAAATA
* *
51822183 TTTA-TTTATTTATATTTATATA
1 TTTATTTTATTTATATATAAATA
51822205 TTTATT
1 TTTATT
51822211 CGCTAACGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 7 0.29
22 16 0.67
23 1 0.04
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (23 bp):
TTTATTTTATTTATATATAAATA
Found at i:51822199 original size:14 final size:14
Alignment explanation
Indices: 51822152--51822209 Score: 54
Period size: 14 Copynumber: 4.4 Consensus size: 14
51822142 AAATTATTCA
51822152 ATTTATTATTT-TAT
1 ATTTA-TATTTATAT
51822166 -TTTAT-TTTATAT
1 ATTTATATTTATAT
* *
51822178 A--AATATTTATTT
1 ATTTATATTTATAT
51822190 ATTTATATTTATAT
1 ATTTATATTTATAT
51822204 ATTTAT
1 ATTTAT
51822210 TCGCTAACGT
Statistics
Matches: 35, Mismatches: 4, Indels: 10
0.71 0.08 0.20
Matches are distributed among these distances:
11 5 0.14
12 11 0.31
13 4 0.11
14 15 0.43
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
ATTTATATTTATAT
Found at i:51822210 original size:26 final size:27
Alignment explanation
Indices: 51822152--51822210 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 27
51822142 AAATTATTCA
51822152 ATTTA-TTATTTTATTTTATTTTATAT
1 ATTTATTTATTTTATTTTATTTTATAT
**
51822178 AAATATTTA-TTTA-TTTATATTTATAT
1 ATTTATTTATTTTATTTTAT-TTTATAT
51822204 ATTTATT
1 ATTTATT
51822211 CGCTAACGTG
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
25 5 0.19
26 19 0.70
27 3 0.11
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (27 bp):
ATTTATTTATTTTATTTTATTTTATAT
Found at i:51822399 original size:52 final size:52
Alignment explanation
Indices: 51822338--51822442 Score: 210
Period size: 52 Copynumber: 2.0 Consensus size: 52
51822328 AAAATATTAG
51822338 TATATAAAGTGCAATTAAAAAATTTGCACAAGTTAGTTGGATAAGTAGTACA
1 TATATAAAGTGCAATTAAAAAATTTGCACAAGTTAGTTGGATAAGTAGTACA
51822390 TATATAAAGTGCAATTAAAAAATTTGCACAAGTTAGTTGGATAAGTAGTACA
1 TATATAAAGTGCAATTAAAAAATTTGCACAAGTTAGTTGGATAAGTAGTACA
51822442 T
1 T
51822443 TTGAAGTTTG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.44, C:0.08, G:0.17, T:0.31
Consensus pattern (52 bp):
TATATAAAGTGCAATTAAAAAATTTGCACAAGTTAGTTGGATAAGTAGTACA
Found at i:51822654 original size:139 final size:141
Alignment explanation
Indices: 51822390--51822804 Score: 416
Period size: 143 Copynumber: 3.0 Consensus size: 141
51822380 AAGTAGTACA
* ** *
51822390 TATATAAAGTGCAATTA-AAAAATTTGCACAAGTTAGTTGGATAAGTAG-TACATTTGAAGTTTG
1 TATATAAAGTGTAATTACAAAAA-TTGCATGAGTTAGTTGAATAAGTAGTTACATTTGAAGTTTG
* * * * *
51822453 ATTTTGGGC-TCAAAAATCTATT-GGATCTTAGACTTGAGAGTTAAGAGGCTACAGGTGGTT-AA
65 ATCTTGGACTTC-AAAATCTGTTAGAATCTTAGACTTAAGAGTTAAGAGGCTACAGGTGGTTAAA
51822515 A-AAAAATACTAG
129 ACAAAAATACTAG
*
51822527 TATATAAAGTGTAGTTACAAAAATTGCATGAGTTAGTTGAATAAGTAGTTACATTTGAAGTTTGA
1 TATATAAAGTGTAATTACAAAAATTGCATGAGTTAGTTGAATAAGTAGTTACATTTGAAGTTTGA
* * * * * * ** *
51822592 CCTTGGACTTCAGAATTTGTTAGAATCTTAGATTTAAGAGTTGAGAGGTTGA-ATTTGTTTAAAA
66 TCTTGGACTTCAAAATCTGTTAGAATCTTAGACTTAAGAGTTAAGAGGCT-ACAGGTGGTTAAAA
*
51822656 CAAAAATATTAG
130 CAAAAATACTAG
* ** *
51822668 TATATGAAGTGTAAAATTACAAAAATTGCATGAACTAGTTGAATAAGTAGTTACATTTGAAGTTG
1 TATATAAAGTGT--AATTACAAAAATTGCATGAGTTAGTTGAATAAGTAGTTACATTTGAAGTTT
* * * * * * **
51822733 GATCTTGGACTTCAAAATGTGTTA-AATTTTGGACTTGAA-AATTGAGAGGCTGCACTTGGTTAA
64 GATCTTGGACTTCAAAATCTGTTAGAATCTTAGACTT-AAGAGTTAAGAGGCTACAGGTGGTTAA
*
51822796 AATAAAAAT
128 AACAAAAAT
51822805 TTTATAAATA
Statistics
Matches: 230, Mismatches: 37, Indels: 17
0.81 0.13 0.06
Matches are distributed among these distances:
137 37 0.16
138 33 0.14
139 30 0.13
140 4 0.02
141 21 0.09
142 35 0.15
143 70 0.30
ACGTcount: A:0.38, C:0.08, G:0.20, T:0.34
Consensus pattern (141 bp):
TATATAAAGTGTAATTACAAAAATTGCATGAGTTAGTTGAATAAGTAGTTACATTTGAAGTTTGA
TCTTGGACTTCAAAATCTGTTAGAATCTTAGACTTAAGAGTTAAGAGGCTACAGGTGGTTAAAAC
AAAAATACTAG
Found at i:51824114 original size:21 final size:22
Alignment explanation
Indices: 51824073--51824121 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 22
51824063 ATAAATGGAT
*
51824073 TAAATAAAATTTTCTTTAATAA
1 TAAATAAAATTTTCATTAATAA
*
51824095 TAAATTAAATTTT-ATTAATAA
1 TAAATAAAATTTTCATTAATAA
51824116 TAAATA
1 TAAATA
51824122 TCACTGGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 12 0.50
22 12 0.50
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (22 bp):
TAAATAAAATTTTCATTAATAA
Found at i:51828054 original size:13 final size:13
Alignment explanation
Indices: 51828036--51828062 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
51828026 TCGCAGCCTA
51828036 ACATATGTGTCAT
1 ACATATGTGTCAT
51828049 ACATATGTGTCAT
1 ACATATGTGTCAT
51828062 A
1 A
51828063 TCCGTCAGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (13 bp):
ACATATGTGTCAT
Found at i:51829290 original size:12 final size:12
Alignment explanation
Indices: 51829273--51829301 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
51829263 GTGGAAAATT
51829273 TGCTACTTTAAG
1 TGCTACTTTAAG
51829285 TGCTACTTTAAG
1 TGCTACTTTAAG
51829297 TGCTA
1 TGCTA
51829302 ATTACAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.24, C:0.17, G:0.17, T:0.41
Consensus pattern (12 bp):
TGCTACTTTAAG
Found at i:51833138 original size:13 final size:13
Alignment explanation
Indices: 51833120--51833155 Score: 72
Period size: 13 Copynumber: 2.8 Consensus size: 13
51833110 CTTGGGACAC
51833120 GCCCGTGTGGGCA
1 GCCCGTGTGGGCA
51833133 GCCCGTGTGGGCA
1 GCCCGTGTGGGCA
51833146 GCCCGTGTGG
1 GCCCGTGTGG
51833156 TCACACACAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.06, C:0.31, G:0.47, T:0.17
Consensus pattern (13 bp):
GCCCGTGTGGGCA
Found at i:51834679 original size:93 final size:93
Alignment explanation
Indices: 51834567--51834737 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
51834557 GCCCATAAGT
* *
51834567 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
51834632 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
51834660 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
51834725 CGAGTTCGGATGC
66 CGAGTTCGGATGC
51834738 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:51834734 original size:46 final size:46
Alignment explanation
Indices: 51834559--51834734 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
51834549 TGTAACCCGC
* * *
51834559 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
51834605 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
51834655 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
51834698 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
51834735 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:51843432 original size:22 final size:20
Alignment explanation
Indices: 51843399--51843446 Score: 53
Period size: 19 Copynumber: 2.3 Consensus size: 20
51843389 GACAGGGTGT
51843399 AAAAAACACTCAAACTATTTAAA
1 AAAAAACACTC-AA--ATTTAAA
*
51843422 AAAAATC-CTCAAATTTAAA
1 AAAAAACACTCAAATTTAAA
51843441 AAAAAA
1 AAAAAA
51843447 GTAACTAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 12 0.52
21 2 0.09
22 3 0.13
23 6 0.26
ACGTcount: A:0.65, C:0.15, G:0.00, T:0.21
Consensus pattern (20 bp):
AAAAAACACTCAAATTTAAA
Found at i:51843753 original size:9 final size:9
Alignment explanation
Indices: 51843695--51843809 Score: 74
Period size: 10 Copynumber: 12.4 Consensus size: 9
51843685 AGATGTGGCA
51843695 AAAAATTAT
1 AAAAATTAT
51843704 AAAAA--AT
1 AAAAATTAT
*
51843711 AAAAATAAAT
1 AAAAAT-TAT
*
51843721 AAAAGTTATT
1 AAAAATTA-T
**
51843731 AAACTTTAAT
1 AAAAATT-AT
51843741 AAAAATTAT
1 AAAAATTAT
51843750 AAAATATT-T
1 AAAA-ATTAT
*
51843759 AAAATTTACT
1 AAAAATTA-T
*
51843769 AAAAATTAA
1 AAAAATTAT
*
51843778 AAAACAATAT
1 AAAA-ATTAT
*
51843788 AAAAATCAT
1 AAAAATTAT
*
51843797 AAAAAATAT
1 AAAAATTAT
51843806 AAAA
1 AAAA
51843810 TAAAATAAAA
Statistics
Matches: 82, Mismatches: 15, Indels: 18
0.71 0.13 0.16
Matches are distributed among these distances:
7 7 0.09
8 2 0.02
9 35 0.43
10 37 0.45
11 1 0.01
ACGTcount: A:0.67, C:0.03, G:0.01, T:0.29
Consensus pattern (9 bp):
AAAAATTAT
Found at i:51843789 original size:38 final size:37
Alignment explanation
Indices: 51843695--51843791 Score: 97
Period size: 38 Copynumber: 2.6 Consensus size: 37
51843685 AGATGTGGCA
* *
51843695 AAAAATTATAAAAAATA-AAAATAAATAAAAGTTATT
1 AAAAATTAAAAAAAATATAAAATAAATAAAAGTTACT
** * ** *
51843731 AAACTTTAATAAAAATTATAAAATATTTAAAATTTACT
1 AAAAATTAA-AAAAAATATAAAATAAATAAAAGTTACT
51843769 AAAAATTAAAAAACAATATAAAA
1 AAAAATTAAAAAA-AATATAAAA
51843792 ATCATAAAAA
Statistics
Matches: 47, Mismatches: 11, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
36 6 0.13
37 11 0.23
38 30 0.64
ACGTcount: A:0.66, C:0.03, G:0.01, T:0.30
Consensus pattern (37 bp):
AAAAATTAAAAAAAATATAAAATAAATAAAAGTTACT
Found at i:51843791 original size:18 final size:18
Alignment explanation
Indices: 51843768--51843809 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
51843758 TAAAATTTAC
51843768 TAAAAATTAAAAAACAATA
1 TAAAAATTAAAAAA-AATA
* *
51843787 TAAAAATCATAAAAAATA
1 TAAAAATTAAAAAAAATA
51843805 TAAAA
1 TAAAA
51843810 TAAAATAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 9 0.43
19 12 0.57
ACGTcount: A:0.74, C:0.05, G:0.00, T:0.21
Consensus pattern (18 bp):
TAAAAATTAAAAAAAATA
Found at i:51844077 original size:38 final size:38
Alignment explanation
Indices: 51844035--51844116 Score: 96
Period size: 38 Copynumber: 2.2 Consensus size: 38
51844025 TGGTATGATA
* *
51844035 ACTTTTATAATTCTT-TTACGAATTT-TATATTTCTTTAT
1 ACTTTTATAATT-TTCTTACGACTTTATA-AATTCTTTAT
*
51844073 ACTTTTATCATTTTCTTACGACTTTATAAATTCTTTAT
1 ACTTTTATAATTTTCTTACGACTTTATAAATTCTTTAT
*
51844111 ATTTTT
1 ACTTTT
51844117 TCTATATTTC
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
37 2 0.05
38 34 0.89
39 2 0.05
ACGTcount: A:0.26, C:0.12, G:0.02, T:0.60
Consensus pattern (38 bp):
ACTTTTATAATTTTCTTACGACTTTATAAATTCTTTAT
Found at i:51844096 original size:20 final size:19
Alignment explanation
Indices: 51844035--51844097 Score: 51
Period size: 20 Copynumber: 3.3 Consensus size: 19
51844025 TGGTATGATA
51844035 ACTTTTATAATTCTT-TTACG
1 ACTTTTAT-ATT-TTCTTACG
* *
51844055 AATTTTATA-TTTCTTTA-T
1 ACTTTTATATTTTC-TTACG
51844073 ACTTTTATCATTTTCTTACG
1 ACTTTTAT-ATTTTCTTACG
51844093 ACTTT
1 ACTTT
51844098 ATAAATTCTT
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
17 2 0.06
18 8 0.24
19 8 0.24
20 16 0.47
ACGTcount: A:0.24, C:0.14, G:0.03, T:0.59
Consensus pattern (19 bp):
ACTTTTATATTTTCTTACG
Found at i:51844410 original size:30 final size:30
Alignment explanation
Indices: 51844374--51844518 Score: 236
Period size: 30 Copynumber: 4.8 Consensus size: 30
51844364 ACTTTTCTCA
51844374 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
* *
51844404 ACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
51844434 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
* *
51844464 ACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
* *
51844494 ACTAGTCACACCTTCTCCACCACCA
1 ACTAGCCACACCTTTTCCACCACCA
51844519 CTTGTACCTA
Statistics
Matches: 105, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 105 1.00
ACGTcount: A:0.26, C:0.48, G:0.03, T:0.23
Consensus pattern (30 bp):
ACTAGCCACACCTTTTCCACCACCAACTCC
Found at i:51844441 original size:60 final size:60
Alignment explanation
Indices: 51844374--51844518 Score: 272
Period size: 60 Copynumber: 2.4 Consensus size: 60
51844364 ACTTTTCTCA
51844374 ACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACTCTTTTTCCACCACCAACTCC
51844434 ACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACTCTTTTTCCACCACCAACTCC
* *
51844494 ACTAGTCACACCTTCTCCACCACCA
1 ACTAGCCACACCTTTTCCACCACCA
51844519 CTTGTACCTA
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 83 1.00
ACGTcount: A:0.26, C:0.48, G:0.03, T:0.23
Consensus pattern (60 bp):
ACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACTCTTTTTCCACCACCAACTCC
Found at i:51845135 original size:25 final size:25
Alignment explanation
Indices: 51845087--51845141 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
51845077 ATTACGTGTA
* *
51845087 TATATATATTTTATACTATTTTATG
1 TATATATATTTAATACTATATTATG
* * *
51845112 TATATATCTTTAATATTATATTATT
1 TATATATATTTAATACTATATTATG
51845137 TATAT
1 TATAT
51845142 TTTTTTTTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.60
Consensus pattern (25 bp):
TATATATATTTAATACTATATTATG
Found at i:51845287 original size:16 final size:15
Alignment explanation
Indices: 51845263--51845310 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
51845253 TAATTATTAT
*
51845263 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
51845279 TATTTTAATATTTTA
1 TATTTTAATATTTTA
51845294 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
51845310 T
1 T
51845311 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:51845298 original size:7 final size:8
Alignment explanation
Indices: 51845263--51845314 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
51845253 TAATTATTAT
*
51845263 TATTCTAA
1 TATTTTAA
*
51845271 TATTTTGA
1 TATTTTAA
51845279 TATTTTAA
1 TATTTTAA
51845287 TATTTT-A
1 TATTTTAA
51845294 TATTTTATA
1 TATTTTA-A
*
51845303 TATTTTAT
1 TATTTTAA
51845311 TATT
1 TATT
51845315 CACATCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:51853701 original size:67 final size:69
Alignment explanation
Indices: 51853583--51853753 Score: 190
Period size: 68 Copynumber: 2.5 Consensus size: 69
51853573 GCTTTCAAGG
* **
51853583 AAAATCAACTCATGTTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTA-TTTTAATTT-T
1 AAAATCAACTCATATTGCGAGAG-TGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTAT
51853646 -TTTT
65 GTTTT
** * *
51853650 AAAAATCAACTCATATTGCG-GAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
1 -AAAATCAACTCATATTGCGAG-AGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTA
51853714 TGTTTT
64 TGTTTT
** *
51853720 -AAATTGACTCATATTGCGAGAGTGAGTTAAGCCT
1 AAAATCAACTCATATTGCGAGAGTGAGTTGAGCCT
51853754 TTTAATTTTT
Statistics
Matches: 88, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
67 25 0.28
68 57 0.65
69 2 0.02
70 4 0.05
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (69 bp):
AAAATCAACTCATATTGCGAGAGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTATG
TTTT
Found at i:51853864 original size:67 final size:67
Alignment explanation
Indices: 51853757--51853938 Score: 228
Period size: 67 Copynumber: 2.7 Consensus size: 67
51853747 TAAGCCTTTT
* * *
51853757 AATTTTTGTTTTTCAAATCAACTCATATTGCTAGAGTGAGTTGAGCCTCAGACACGCTGA-GTAA
1 AATTTCTG-TTTTAAAATCAACTCATATTGCGAGAGTGAGTTGAGCCTCAGACACGCTGAGGT-A
51853821 TTTC
64 TTTC
* *
51853825 AATTTCTGTTTTAAAATCAACT-ATATTGCGAGAAATGAGTTGAGCCTCAGACACGTTGAGGTAT
1 AATTTCTGTTTTAAAATCAACTCATATTGCGAG-AGTGAGTTGAGCCTCAGACACGCTGAGGTAT
51853889 TTC
65 TTC
* *
51853892 AATTTCT-TTTTCAAAAAT-GACTCATATTGCGAGAGTGAGTTAAGCCT
1 AATTTCTGTTTT--AAAATCAACTCATATTGCGAGAGTGAGTTGAGCCT
51853939 TTAATTTTGT
Statistics
Matches: 101, Mismatches: 8, Indels: 11
0.84 0.07 0.09
Matches are distributed among these distances:
66 13 0.13
67 64 0.63
68 24 0.24
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (67 bp):
AATTTCTGTTTTAAAATCAACTCATATTGCGAGAGTGAGTTGAGCCTCAGACACGCTGAGGTATT
TC
Found at i:51853921 original size:185 final size:184
Alignment explanation
Indices: 51853584--51854088 Score: 653
Period size: 185 Copynumber: 2.7 Consensus size: 184
51853574 CTTTCAAGGA
* *
51853584 AAATCAACTCATGTTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTAATTT-T-T
1 AAATCAACTCATATTGCGAGAG-TGAGTTGAGCCTC-AGACACG-TGAGGTATTTCAATTTCTGT
* * * * *
51853647 TTTAAAAATCAACTCATATTGCG-GAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGT
63 TTTAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC--AGCACGCTGAGGTA-TTTCAAT
* *
51853711 TTATGTTTT--AAATTGACTCATATTGCGAGAGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
125 TTCTGTTTTCAAAAATGACTCATATTGCGAGAGTGAGTTAAGCC-TTTAA-TTTTGTTTTTC
*
51853771 AAATCAACTCATATTGCTAGAGTGAGTTGAGCCTCAGACACGCTGA-GTAATTTCAATTTCTGTT
1 AAATCAACTCATATTGCGAGAGTGAGTTGAGCCTCAGACACG-TGAGGT-ATTTCAATTTCTGTT
*
51853835 TT-AAAATCAACT-ATATTGCGAGAAATGAGTTGAGCCTCAGACACGTTGAGGTATTTCAATTTC
64 TTAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAG-CACGCTGAGGTATTTCAATTTC
51853898 T-TTTTCAAAAATGACTCATATTGCGAGAGTGAGTTAAGCCTTTAATTTTGTTTTTC
128 TGTTTTCAAAAATGACTCATATTGCGAGAGTGAGTTAAGCCTTTAATTTTGTTTTTC
51853954 AAATCAACTCATATTGCGAG-GTGAGTTGAGCCTCAGGACACGTGAGGTATTTC-ATTTCTGTTG
1 AAATCAACTCATATTGCGAGAGTGAGTTGAGCCTCA-GACACGTGAGGTATTTCAATTTCTGTT-
*
51854017 TTAAAAAAAT-AACTCATATTGCGAG-AATGAGTTGAG-CTCAGGACGCTGAGGTAATTTC-ATT
64 TT--AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGCACGCTGAGGT-ATTTCAATT
51854078 TCTGTTTTCAA
126 TCTGTTTTCAA
51854089 TTACTTTATT
Statistics
Matches: 287, Mismatches: 15, Indels: 36
0.85 0.04 0.11
Matches are distributed among these distances:
181 9 0.03
182 40 0.14
183 59 0.21
184 31 0.11
185 84 0.29
186 40 0.14
187 24 0.08
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.36
Consensus pattern (184 bp):
AAATCAACTCATATTGCGAGAGTGAGTTGAGCCTCAGACACGTGAGGTATTTCAATTTCTGTTTT
AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGCACGCTGAGGTATTTCAATTTCTGT
TTTCAAAAATGACTCATATTGCGAGAGTGAGTTAAGCCTTTAATTTTGTTTTTC
Found at i:51853982 original size:115 final size:117
Alignment explanation
Indices: 51853825--51854049 Score: 318
Period size: 117 Copynumber: 1.9 Consensus size: 117
51853815 GAGTAATTTC
51853825 AATTTCTGTTTTAAAATCAACTATATTGCGAGAAATGAGTTGAGCCTCA-GACACGTTGAGGTAT
1 AATTTCTGTTTTAAAATCAACTATATTGCGAG-AATGAGTTGAGCCTCAGGACACG-TGAGGTAT
* * *
51853889 TTCAATTTCT-TT-TT-CAAAAATGACTCATATTGCGAGAGTGAGTTAAGCCTTT
64 TTC-ATTTCTGTTGTTAAAAAAATAACTCATATTGCGAGAATGAGTTAAGCCTTT
* *
51853941 AATTT-TGTTTTTCAAATCAACTCATATTGCGAG-GTGAGTTGAGCCTCAGGACACGTGAGGTAT
1 AATTTCTG-TTTTAAAATCAACT-ATATTGCGAGAATGAGTTGAGCCTCAGGACACGTGAGGTAT
51854004 TTCATTTCTGTTGTTAAAAAAATAACTCATATTGCGAGAATGAGTT
64 TTCATTTCTGTTGTTAAAAAAATAACTCATATTGCGAGAATGAGTT
51854050 GAGCTCAGGA
Statistics
Matches: 98, Mismatches: 5, Indels: 11
0.86 0.04 0.10
Matches are distributed among these distances:
114 6 0.06
115 29 0.30
116 26 0.27
117 37 0.38
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.36
Consensus pattern (117 bp):
AATTTCTGTTTTAAAATCAACTATATTGCGAGAATGAGTTGAGCCTCAGGACACGTGAGGTATTT
CATTTCTGTTGTTAAAAAAATAACTCATATTGCGAGAATGAGTTAAGCCTTT
Found at i:51854039 original size:68 final size:69
Alignment explanation
Indices: 51853954--51854083 Score: 203
Period size: 68 Copynumber: 1.9 Consensus size: 69
51853944 TTTGTTTTTC
*
51853954 AAATCAACTCATATTGCGAG-GTGAGTTGAGCCTCAGGACACGTGAGGT-ATTTCATTTCTGTTG
1 AAATCAACTCATATTGCGAGAATGAGTTGAG-CTCAGGACAC-TGAGGTAATTTCATTTCTGTTG
51854017 TTAAAA
64 TTAAAA
*
51854023 AAAT-AACTCATATTGCGAGAATGAGTTGAGCTCAGGACGCTGAGGTAATTTCATTTCTGTT
1 AAATCAACTCATATTGCGAGAATGAGTTGAGCTCAGGACACTGAGGTAATTTCATTTCTGTT
51854084 TTCAATTACT
Statistics
Matches: 57, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
67 6 0.11
68 38 0.67
69 13 0.23
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.32
Consensus pattern (69 bp):
AAATCAACTCATATTGCGAGAATGAGTTGAGCTCAGGACACTGAGGTAATTTCATTTCTGTTGTT
AAAA
Found at i:51870130 original size:28 final size:28
Alignment explanation
Indices: 51870089--51870147 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 28
51870079 GAACAACAAA
* *
51870089 AACTTCACTGCCCCAAGACAGATTAGTT
1 AACTCCACTCCCCCAAGACAGATTAGTT
*
51870117 AACTCCACTCCCCCAAGATAGATTAGTT
1 AACTCCACTCCCCCAAGACAGATTAGTT
51870145 AAC
1 AAC
51870148 AATTAACAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.34, C:0.31, G:0.12, T:0.24
Consensus pattern (28 bp):
AACTCCACTCCCCCAAGACAGATTAGTT
Found at i:51873503 original size:49 final size:49
Alignment explanation
Indices: 51873388--51873566 Score: 168
Period size: 49 Copynumber: 3.7 Consensus size: 49
51873378 GATAAAATGT
* ** *** *
51873388 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTAGCA-C-ATCAAAGT
1 CGATGCCATGTCCCAGACA-GGTCTTACACTGACTTTCATCTATCGGTGA
*
51873436 CGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATAC-ATCGAG-GC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCAT-CTATCG-GTGA
* * * * *
51873485 CGATGTCGTGTCCTAGACAGGTCTTACATTGGCTTTCATCTATCGGTGA
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATCTATCGGTGA
* *
51873534 TGATGCCATGTCCCAGACAGGTCTTCCACTGAC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGAC
51873567 ACTCAACAAG
Statistics
Matches: 107, Mismatches: 19, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
47 16 0.15
48 21 0.20
49 70 0.65
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.27
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATCTATCGGTGA
Found at i:51873690 original size:46 final size:45
Alignment explanation
Indices: 51873576--51873750 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 45
51873566 CACTCAACAA
* * * *
51873576 GCTGATGCCATGTCCCAAACAGGTCTTACACTAGCTTGTATTTCTCAAG
1 GCTGATG-CATGTCCCAGACATGTCTTACACTAGC---TCTTTCTCAAT
*
51873625 GCTGATGCATGTGCCAGACATGTCTTACACTAGCTCTTGTCTCAAT
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTT-TCTCAAT
* * *
51873671 GCTGATGCATGTCCTAGACATTTCTTACACTGGCTC--TCAT-AATGT
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTTTC-TCAA--T
51873716 GGCTGATGCATGTCCCAGACATGTCTTACACTAGC
1 -GCTGATGCATGTCCCAGACATGTCTTACACTAGC
51873751 ACACATATCA
Statistics
Matches: 109, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
43 4 0.04
44 1 0.01
45 4 0.04
46 69 0.63
48 24 0.22
49 7 0.06
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.31
Consensus pattern (45 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTTTCTCAAT
Found at i:51876065 original size:17 final size:17
Alignment explanation
Indices: 51876039--51876071 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
51876029 TTTAATTAGA
*
51876039 TAAATTAATTTCTCAAT
1 TAAATAAATTTCTCAAT
51876056 TAAATAAATTTCTCAA
1 TAAATAAATTTCTCAA
51876072 CCCAATTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.12, G:0.00, T:0.42
Consensus pattern (17 bp):
TAAATAAATTTCTCAAT
Found at i:51880917 original size:13 final size:13
Alignment explanation
Indices: 51880899--51880923 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51880889 TAATGGTATA
51880899 TTGAATCCATGAT
1 TTGAATCCATGAT
51880912 TTGAATCCATGA
1 TTGAATCCATGA
51880924 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:51882362 original size:47 final size:47
Alignment explanation
Indices: 51882304--51882727 Score: 644
Period size: 47 Copynumber: 9.3 Consensus size: 47
51882294 ATTCAGCCAA
*
51882304 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
*
51882351 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
*
51882398 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
*
51882445 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
*
51882494 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* *
51882541 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCCATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* *
51882588 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCCATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
51882635 GAAAGTG--TA-ATGTGATAA-G--TAATAG--GA--TG-TG-A--T
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
51882668 G-AAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
51882714 GAAAGTGTATATAT
1 GAAAGTGTATATAT
51882728 AATGGCCGAT
Statistics
Matches: 353, Mismatches: 7, Indels: 34
0.90 0.02 0.09
Matches are distributed among these distances:
32 5 0.01
33 2 0.01
34 2 0.01
35 10 0.03
36 3 0.01
37 2 0.01
38 6 0.02
39 1 0.00
40 2 0.01
41 6 0.02
42 2 0.01
43 3 0.01
44 9 0.03
45 2 0.01
46 2 0.01
47 249 0.71
49 47 0.13
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
Found at i:51882432 original size:94 final size:94
Alignment explanation
Indices: 51882304--51882817 Score: 650
Period size: 94 Copynumber: 5.7 Consensus size: 94
51882294 ATTCAGCCAA
*
51882304 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
51882369 TAAGGCCTAATGGCCGATGTGATGAATGT
66 TAAGGCCTAATGGCCGATGTGATGAATGT
*
51882398 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGT
51882463 GATAAGGCCTAATGGCCGATGTGATGAATGT
64 GATAAGGCCTAATGGCCGATGTGATGAATGT
* *
51882494 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
51882559 TAAGGCCTAATAGCCCATGTGATGAATGT
66 TAAGGCCTAATGGCCGATGTGATGAATGT
* *
51882588 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCCATGTGATGAATGTGAAAGTG--TA-ATGTGA
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
51882650 TAA-G--TAATAG--GA--TG-TG-A--T
66 TAAGGCCTAATGGCCGATGTGATGAATGT
51882668 G-AAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG----TA--T-A
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
51882725 T-A----TAATGGCCGATGTGATGAATGT
66 TAAGGCCTAATGGCCGATGTGATGAATGT
* * * * * * * * * *
51882749 GAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
51882814 TAAG
66 TAAG
51882818 TCCCGAAGGG
Statistics
Matches: 377, Mismatches: 22, Indels: 45
0.85 0.05 0.10
Matches are distributed among these distances:
73 5 0.01
74 1 0.00
75 4 0.01
76 1 0.00
77 2 0.01
78 3 0.01
79 51 0.14
80 2 0.01
81 2 0.01
82 45 0.12
83 2 0.01
84 2 0.01
86 2 0.01
88 7 0.02
89 2 0.01
90 2 0.01
91 8 0.02
92 2 0.01
94 142 0.38
96 92 0.24
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (94 bp):
GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
TAAGGCCTAATGGCCGATGTGATGAATGT
Found at i:51882628 original size:190 final size:174
Alignment explanation
Indices: 51882304--51882727 Score: 625
Period size: 190 Copynumber: 2.4 Consensus size: 174
51882294 ATTCAGCCAA
51882304 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * *
51882369 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
66 TAAGGCCTAATAGCCCATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCCAT
*
51882434 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
131 GTGATGAATGTGAAAGTG----TA-ATGTGATAA-G--TAATAG--GA--TG-TG-A--T
*
51882494 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
51882559 TAAGGCCTAATAGCCCATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCCAT
66 TAAGGCCTAATAGCCCATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCCAT
51882624 GTGATGAATGTGAAAGTGTAATGTGATAAGTAATAGGATGTGAT
131 GTGATGAATGTGAAAGTGTAATGTGATAAGTAATAGGATGTGAT
*
51882668 G-AAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
51882728 AATGGCCGAT
Statistics
Matches: 225, Mismatches: 9, Indels: 17
0.90 0.04 0.07
Matches are distributed among these distances:
173 57 0.25
174 2 0.01
176 1 0.00
177 2 0.01
178 2 0.01
180 2 0.01
182 5 0.02
184 1 0.00
185 9 0.04
186 2 0.01
190 142 0.63
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (174 bp):
GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
TAAGGCCTAATAGCCCATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCCAT
GTGATGAATGTGAAAGTGTAATGTGATAAGTAATAGGATGTGAT
Found at i:51882737 original size:35 final size:35
Alignment explanation
Indices: 51882692--51882762 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
51882682 TGATAAGGCC
51882692 TAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 TAATAGCCGATGTGATGAATGTGAAAGTGTATATA
*
51882727 TAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TAATAGCCGATGTGATGAATGTGAAAGTGTATATA
51882762 T
1 T
51882763 GTGACAGGGC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (35 bp):
TAATAGCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:51882992 original size:37 final size:37
Alignment explanation
Indices: 51882936--51883014 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
51882926 CCGAGCTCTA
* *
51882936 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
51882973 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
51883010 AAGAC
1 AAGAC
51883015 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:51884836 original size:105 final size:103
Alignment explanation
Indices: 51884647--51884847 Score: 285
Period size: 105 Copynumber: 1.9 Consensus size: 103
51884637 ACACGGGCAC
** * *
51884647 GTGCTCGGCCATGTGAGAACCCCTGTAGGTTTGAAATGAGTAATAAATTCAATTTATTCTACACC
1 GTGCTCGGCCATGTGAGAACCCCTGTAGGTTCAAAATGAGTAATAAATTCAATTAATTCCACACC
* *
51884712 GGTAAGGGACACAGGTGTGTCCCAAAGCACACGGATGT
66 GATAAGGGACACAGGTGTGTCCCAAAACACACGGATGT
**
51884750 GTGCTCGGCTGTGTGAGAACCCCATGTAGGTTCAAAATGAGTAAATAAATTCAATTAATTCCACA
1 GTGCTCGGCCATGTGAGAACCCC-TGTAGGTTCAAAATGAGT-AATAAATTCAATTAATTCCACA
* * *
51884815 CTGATATGGGACACGGGTGTGTCCCAAAACACA
64 CCGATAAGGGACACAGGTGTGTCCCAAAACACA
51884848 TGGGCGTGTG
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
103 21 0.25
104 16 0.19
105 48 0.56
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (103 bp):
GTGCTCGGCCATGTGAGAACCCCTGTAGGTTCAAAATGAGTAATAAATTCAATTAATTCCACACC
GATAAGGGACACAGGTGTGTCCCAAAACACACGGATGT
Found at i:51895012 original size:15 final size:15
Alignment explanation
Indices: 51894992--51895026 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
51894982 TGAGTAAAGA
51894992 AGAAGGTAGAAAATG
1 AGAAGGTAGAAAATG
51895007 AGAAGGTAGAAAATG
1 AGAAGGTAGAAAATG
51895022 AGAAG
1 AGAAG
51895027 TAAAGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.54, C:0.00, G:0.34, T:0.11
Consensus pattern (15 bp):
AGAAGGTAGAAAATG
Found at i:51896982 original size:33 final size:33
Alignment explanation
Indices: 51896940--51897002 Score: 126
Period size: 33 Copynumber: 1.9 Consensus size: 33
51896930 GCAATATTAC
51896940 AACAATATTTTATTTAAAACCAAAGACAATGGT
1 AACAATATTTTATTTAAAACCAAAGACAATGGT
51896973 AACAATATTTTATTTAAAACCAAAGACAAT
1 AACAATATTTTATTTAAAACCAAAGACAAT
51897003 AGTACCAGTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.51, C:0.13, G:0.06, T:0.30
Consensus pattern (33 bp):
AACAATATTTTATTTAAAACCAAAGACAATGGT
Found at i:51898738 original size:93 final size:93
Alignment explanation
Indices: 51898625--51898794 Score: 304
Period size: 93 Copynumber: 1.8 Consensus size: 93
51898615 CGCCCATAAG
* *
51898625 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTCCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATCCGCATCCATAAGTGAACTCGGACTCAACTCA
51898690 ACGAGTTCGGATACCTAGTTACATCTCA
66 ACGAGTTCGGATACCTAGTTACATCTCA
* *
51898718 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATCCGCATCCATAAGTGAACTCGGACTCAACTCA
51898783 ACGAGTTCGGAT
66 ACGAGTTCGGAT
51898795 GCTCAACCAT
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATCCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATACCTAGTTACATCTCA
Found at i:51898793 original size:46 final size:46
Alignment explanation
Indices: 51898618--51898793 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
51898608 TGTAACCCGC
* * * *
51898618 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTCCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
51898664 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATACCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--A-C-A-TTCGCAT
*
51898714 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
51898757 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
51898794 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 3 0.03
46 63 0.57
47 28 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:51904704 original size:80 final size:80
Alignment explanation
Indices: 51904571--51904738 Score: 252
Period size: 80 Copynumber: 2.1 Consensus size: 80
51904561 CGGATGATAA
* *
51904571 CCGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
* *
51904636 TGCGAGTTA-CTATAT
66 AGCAAG-TAGCTATAT
*
51904651 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTA-AATCCGGGCTAAGTCCCGAAGGCATTT
51904715 GAGCAAGTAGCTATAT
65 GAGCAAGTAGCTATAT
51904731 CC-GGCTAA
1 CCGGGCTAA
51904739 ATTCTGAAGG
Statistics
Matches: 81, Mismatches: 5, Indels: 5
0.89 0.05 0.05
Matches are distributed among these distances:
79 8 0.10
80 71 0.88
81 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
AGCAAGTAGCTATAT
Found at i:51904729 original size:40 final size:40
Alignment explanation
Indices: 51904567--51904715 Score: 246
Period size: 40 Copynumber: 3.7 Consensus size: 40
51904557 TATTCGGATG
* * *
51904567 ATAACCGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
51904607 A-AATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAA-CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
51904647 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
51904687 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
51904716 AGCAAGTAGC
Statistics
Matches: 102, Mismatches: 5, Indels: 4
0.92 0.05 0.04
Matches are distributed among these distances:
39 2 0.02
40 99 0.97
41 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:51907120 original size:40 final size:40
Alignment explanation
Indices: 51907072--51907299 Score: 411
Period size: 40 Copynumber: 5.7 Consensus size: 40
51907062 GCAAACACAT
* * *
51907072 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
51907112 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
51907152 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
51907192 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
51907232 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
51907272 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
51907300 TCCAATGCTC
Statistics
Matches: 181, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 181 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:51916722 original size:80 final size:80
Alignment explanation
Indices: 51916589--51916756 Score: 261
Period size: 80 Copynumber: 2.1 Consensus size: 80
51916579 CGGATGATAA
*
51916589 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
* *
51916654 TGCGAGTTA-CTATAT
66 AGCAAG-TAGCTATAT
*
51916669 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTA-AATCCGGGCTAAGTCCCGAAGGCATTT
51916733 GAGCAAGTAGCTATAT
65 GAGCAAGTAGCTATAT
51916749 CC-GGCTAA
1 CCGGGCTAA
51916757 ATTCGAAGGT
Statistics
Matches: 82, Mismatches: 4, Indels: 5
0.90 0.04 0.05
Matches are distributed among these distances:
79 8 0.10
80 72 0.88
81 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
AGCAAGTAGCTATAT
Found at i:51916747 original size:40 final size:40
Alignment explanation
Indices: 51916585--51916733 Score: 255
Period size: 40 Copynumber: 3.7 Consensus size: 40
51916575 TATTCGGATG
* *
51916585 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
51916625 A-AATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAA-CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
51916665 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
51916705 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
51916734 AGCAAGTAGC
Statistics
Matches: 103, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
39 2 0.02
40 100 0.97
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:51919122 original size:40 final size:40
Alignment explanation
Indices: 51919074--51919301 Score: 411
Period size: 40 Copynumber: 5.7 Consensus size: 40
51919064 GCAAACACAT
* * *
51919074 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
51919114 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
51919154 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
51919194 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
51919234 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
51919274 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
51919302 TCCAATGCTC
Statistics
Matches: 181, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 181 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:51928730 original size:80 final size:80
Alignment explanation
Indices: 51928597--51928774 Score: 263
Period size: 80 Copynumber: 2.2 Consensus size: 80
51928587 CGGATGATAA
*
51928597 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
* *
51928662 TGCGAGTTA-CTATAT
66 AGCAAG-TAGCTATAT
*
51928677 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTA-AATCCGGGCTAAGTCCCGAAGGCATTT
51928741 GAGCAAGTAGCTATAT
65 GAGCAAGTAGCTATAT
* *
51928757 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
51928775 TACTTGGTTT
Statistics
Matches: 90, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
79 16 0.18
80 72 0.80
81 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
AGCAAGTAGCTATAT
Found at i:51928755 original size:40 final size:40
Alignment explanation
Indices: 51928593--51928741 Score: 255
Period size: 40 Copynumber: 3.7 Consensus size: 40
51928583 TATTCGGATG
* *
51928593 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
51928633 A-AATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAA-CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
51928673 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
51928713 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
51928742 AGCAAGTAGC
Statistics
Matches: 103, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
39 2 0.02
40 100 0.97
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:51932427 original size:69 final size:69
Alignment explanation
Indices: 51932316--51932452 Score: 256
Period size: 69 Copynumber: 2.0 Consensus size: 69
51932306 GGTACATGTA
* *
51932316 CATATATTGTTCTAATGTTTGTGTAAATTGGTAAATAATTATGAGTGGCTATGATTCTTTCTTAT
1 CATATATTGTTCTAATGTTTGTGTAAATTGGTAAATAATTATGAGCGGCTATAATTCTTTCTTAT
51932381 GCAG
66 GCAG
51932385 CATATATTGTTCTAATGTTTGTGTAAATTGGTAAATAATTATGAGCGGCTATAATTCTTTCTTAT
1 CATATATTGTTCTAATGTTTGTGTAAATTGGTAAATAATTATGAGCGGCTATAATTCTTTCTTAT
51932450 GCA
66 GCA
51932453 AAACAAACTT
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 66 1.00
ACGTcount: A:0.28, C:0.09, G:0.18, T:0.45
Consensus pattern (69 bp):
CATATATTGTTCTAATGTTTGTGTAAATTGGTAAATAATTATGAGCGGCTATAATTCTTTCTTAT
GCAG
Found at i:51941239 original size:5 final size:5
Alignment explanation
Indices: 51941229--51941256 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
51941219 TTGTGTGTTC
51941229 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
51941257 TACAGTTAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:51945553 original size:24 final size:24
Alignment explanation
Indices: 51945488--51945554 Score: 89
Period size: 24 Copynumber: 2.8 Consensus size: 24
51945478 GGTAGCTCAT
51945488 AAGAACCATAATCAGGAAGTTCACA
1 AAGAACCAT-ATCAGGAAGTTCACA
* * *
51945513 AAGAACCTTGTCGGGAAGTTCACA
1 AAGAACCATATCAGGAAGTTCACA
*
51945537 AAGAACCATACCAGGAAG
1 AAGAACCATATCAGGAAG
51945555 CTCCAGATAG
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
24 27 0.77
25 8 0.23
ACGTcount: A:0.43, C:0.21, G:0.21, T:0.15
Consensus pattern (24 bp):
AAGAACCATATCAGGAAGTTCACA
Found at i:51948614 original size:24 final size:23
Alignment explanation
Indices: 51948575--51948628 Score: 63
Period size: 24 Copynumber: 2.3 Consensus size: 23
51948565 CCTTGTAACC
* *
51948575 AGAAGCTCACATAGAGCCATTTCG
1 AGAAGCTCACAAAGAG-CATATCG
* *
51948599 GGAAGCTCATAAAGAGCATATCG
1 AGAAGCTCACAAAGAGCATATCG
51948622 AGAAGCT
1 AGAAGCT
51948629 TATCTGGGCT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
23 12 0.48
24 13 0.52
ACGTcount: A:0.37, C:0.20, G:0.24, T:0.19
Consensus pattern (23 bp):
AGAAGCTCACAAAGAGCATATCG
Found at i:51948695 original size:24 final size:24
Alignment explanation
Indices: 51948668--51948736 Score: 111
Period size: 24 Copynumber: 2.9 Consensus size: 24
51948658 AGAACCATAA
51948668 TCGGGAAGTTCACAAAGAACCTTG
1 TCGGGAAGTTCACAAAGAACCTTG
*
51948692 TCGGGAAGTTCACAAAGAACCTTT
1 TCGGGAAGTTCACAAAGAACCTTG
* *
51948716 TTGGGAAGTTCAAAAAGAACC
1 TCGGGAAGTTCACAAAGAACC
51948737 ATATTGGGAA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 42 1.00
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.22
Consensus pattern (24 bp):
TCGGGAAGTTCACAAAGAACCTTG
Found at i:51948743 original size:24 final size:24
Alignment explanation
Indices: 51948657--51948747 Score: 110
Period size: 24 Copynumber: 3.8 Consensus size: 24
51948647 GGTGGCTCAT
51948657 AAGAACCATAATCGGGAAGTTCACA
1 AAGAACCAT-ATCGGGAAGTTCACA
* *
51948682 AAGAACCTTGTCGGGAAGTTCACA
1 AAGAACCATATCGGGAAGTTCACA
* * * *
51948706 AAGAACCTTTTTGGGAAGTTCAAA
1 AAGAACCATATCGGGAAGTTCACA
*
51948730 AAGAACCATATTGGGAAG
1 AAGAACCATATCGGGAAG
51948748 CTCCAGATAG
Statistics
Matches: 59, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
24 51 0.86
25 8 0.14
ACGTcount: A:0.40, C:0.16, G:0.23, T:0.21
Consensus pattern (24 bp):
AAGAACCATATCGGGAAGTTCACA
Found at i:51957807 original size:28 final size:28
Alignment explanation
Indices: 51957741--51957921 Score: 285
Period size: 28 Copynumber: 6.5 Consensus size: 28
51957731 ATATTAAGTC
* * *
51957741 CGCACA-TTCAGTGCTATATAATC-AGCT
1 CGCACACTT-AGTGCTACATAGTCAAACT
* *
51957768 CGCACACCTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
*
51957796 CGCACACTTAGTGCTATATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
51957824 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
51957852 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
51957880 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
51957908 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51957922 CAATCTCATG
Statistics
Matches: 145, Mismatches: 7, Indels: 3
0.94 0.05 0.02
Matches are distributed among these distances:
27 19 0.13
28 126 0.87
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAGTCAAACT
Found at i:51960386 original size:27 final size:27
Alignment explanation
Indices: 51960356--51960479 Score: 124
Period size: 27 Copynumber: 4.6 Consensus size: 27
51960346 CCCAATTTGA
51960356 TAAAATGACTATTTTGCCCCTATGAGG
1 TAAAATGACTATTTTGCCCCTATGAGG
* * **
51960383 TAAAGTGACTATTTTACCATTATGAGG
1 TAAAATGACTATTTTGCCCCTATGAGG
* * *
51960410 TAAAATGACTGTTTTGCCCTTATGTGG
1 TAAAATGACTATTTTGCCCCTATGAGG
*** *
51960437 TAAAATGACTAAAATGCCCCTA-CATGG
1 TAAAATGACTATTTTGCCCCTATGA-GG
*
51960464 TAAATTGACTATTTTG
1 TAAAATGACTATTTTG
51960480 ACCTTATGTG
Statistics
Matches: 76, Mismatches: 20, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
27 76 1.00
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.35
Consensus pattern (27 bp):
TAAAATGACTATTTTGCCCCTATGAGG
Found at i:51966473 original size:40 final size:40
Alignment explanation
Indices: 51966354--51966530 Score: 180
Period size: 40 Copynumber: 4.5 Consensus size: 40
51966344 CGGATGACAA
* * *
51966354 CCGGACTAAGATCCGAAGGCATTCGTGTGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATAT
* * * * * *
51966394 CCGGGTTATGTCCCGAAGGCATTCATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-CTATAT
*
51966434 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATAT
** * * *
51966474 TTGGGCTAAGACTCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATAT
51966514 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
51966531 ATGCTTGGGT
Statistics
Matches: 111, Mismatches: 23, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
38 1 0.01
39 14 0.13
40 94 0.85
41 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATAT
Found at i:51992823 original size:27 final size:27
Alignment explanation
Indices: 51992653--51992822 Score: 216
Period size: 27 Copynumber: 6.3 Consensus size: 27
51992643 CCCTCGGTTA
* * *
51992653 GTAAAATTACTGTAATA-CCCTATAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
51992679 GTAAAATGACCGTAATACCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
* *
51992706 GTAAAATGATCGTAATACCCCTGTAGT
1 GTAAAATGACCGTAATACCCCTGTAGG
* *
51992733 GTAAAATGACCGTAATGCCCTTGTAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
* *
51992760 GTAAAATGACCATAATACCCCTGTAAG
1 GTAAAATGACCGTAATACCCCTGTAGG
* * * *
51992787 GTAAAATGATCGTAATACTCTTGTATG
1 GTAAAATGACCGTAATACCCCTGTAGG
51992814 GTAAAATGA
1 GTAAAATGA
51992823 TGATTATGCC
Statistics
Matches: 125, Mismatches: 18, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
26 15 0.12
27 110 0.88
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (27 bp):
GTAAAATGACCGTAATACCCCTGTAGG
Found at i:51992835 original size:81 final size:81
Alignment explanation
Indices: 51992653--51992822 Score: 245
Period size: 81 Copynumber: 2.1 Consensus size: 81
51992643 CCCTCGGTTA
* * * * * *
51992653 GTAAAATTACTGTAATACCC-TATAGGGTAAAATGACCGTAATACCCCTGTAGGGTAAAATGATC
1 GTAAAATGACCGTAATGCCCTTGTAGGGTAAAATGACCATAATACCCCTGTAAGGTAAAATGATC
51992717 GTAATACCCCTGTAGT
66 GTAATACCCCTGTAGT
51992733 GTAAAATGACCGTAATGCCCTTGTAGGGTAAAATGACCATAATACCCCTGTAAGGTAAAATGATC
1 GTAAAATGACCGTAATGCCCTTGTAGGGTAAAATGACCATAATACCCCTGTAAGGTAAAATGATC
* *
51992798 GTAATACTCTTGTA-T
66 GTAATACCCCTGTAGT
51992813 GGTAAAATGA
1 -GTAAAATGA
51992823 TGATTATGCC
Statistics
Matches: 80, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
80 18 0.22
81 62 0.77
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (81 bp):
GTAAAATGACCGTAATGCCCTTGTAGGGTAAAATGACCATAATACCCCTGTAAGGTAAAATGATC
GTAATACCCCTGTAGT
Found at i:51994369 original size:35 final size:35
Alignment explanation
Indices: 51994321--51994479 Score: 140
Period size: 35 Copynumber: 4.5 Consensus size: 35
51994311 GTATGTACAT
51994321 ATGTGATGATATATTGAACTTGTATATCTGGCCAC
1 ATGTGATGATATATTGAACTTGTATATCTGGCCAC
* * * * * ***
51994356 ATTTGATGTTATATTAAACTTGAATATTTGATTAC
1 ATGTGATGATATATTGAACTTGTATATCTGGCCAC
* * * * *
51994391 ATGTGATGTTTTATTGAGCTTGTATA-CTCGGTCAT
1 ATGTGATGATATATTGAACTTGTATATCT-GGCCAC
* * * *
51994426 ATATGATGATATATTGTACTTGTATATTTGGCCAT
1 ATGTGATGATATATTGAACTTGTATATCTGGCCAC
*
51994461 ATGTGATGATATAATGAAC
1 ATGTGATGATATATTGAAC
51994480 CTTGAGTATT
Statistics
Matches: 95, Mismatches: 27, Indels: 4
0.75 0.21 0.03
Matches are distributed among these distances:
34 1 0.01
35 93 0.98
36 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.18, T:0.43
Consensus pattern (35 bp):
ATGTGATGATATATTGAACTTGTATATCTGGCCAC
Found at i:51994439 original size:70 final size:70
Alignment explanation
Indices: 51994321--51994479 Score: 167
Period size: 70 Copynumber: 2.3 Consensus size: 70
51994311 GTATGTACAT
* *
51994321 ATGTGATGATATATTGAACTTGTATATCTGGCCACATTTGATGTTATATTAAACTTGAATATTTG
1 ATGTGATGATATATTGAACTTGTATATCTGGCCACATATGATGATATATTAAACTTGAATATTTG
51994386 ATTAC
66 ATTAC
* * * * * ** *
51994391 ATGTGATGTTTTATTGAGCTTGTATA-CTCGGTCATATATGATGATATATTGTACTTGTATATTT
1 ATGTGATGATATATTGAACTTGTATATCT-GGCCACATATGATGATATATTAAACTTGAATATTT
*** *
51994455 GGCCAT
65 GATTAC
*
51994461 ATGTGATGATATAATGAAC
1 ATGTGATGATATATTGAAC
51994480 CTTGAGTATT
Statistics
Matches: 70, Mismatches: 18, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
69 2 0.03
70 68 0.97
ACGTcount: A:0.30, C:0.09, G:0.18, T:0.43
Consensus pattern (70 bp):
ATGTGATGATATATTGAACTTGTATATCTGGCCACATATGATGATATATTAAACTTGAATATTTG
ATTAC
Found at i:52007457 original size:46 final size:46
Alignment explanation
Indices: 52007305--52007476 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
52007295 GGTTGAGCAT
* *
52007305 CCGAACTCGTTGAGTTGAGT-CGAGTTCA-TTATGGAT-CGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
52007348 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
* *
52007393 ATCCGAGCTCGTTCAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
52007441 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
52007477 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 10, Indels: 21
0.78 0.07 0.15
Matches are distributed among these distances:
42 5 0.05
43 20 0.19
44 9 0.08
45 1 0.01
46 35 0.33
47 26 0.24
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:52007468 original size:93 final size:90
Alignment explanation
Indices: 52007301--52007468 Score: 264
Period size: 93 Copynumber: 1.8 Consensus size: 90
52007291 GGATGGTTGA
* * *
52007301 GCATCCGAACTCGTTGAGTTGAGTCGAGTTCATTATGGATCGAATGTCCGAACTCGTTGAGTTGA
1 GCATCCGAACTCGTTCAGTTGAGTCGAGTTCATTATGGATCGAACGCCCGAACTCGTTGAGTTGA
52007366 GTCCGAGTTCGTGAGATGTAACTAG
66 GTCCGAGTTCGTGAGATGTAACTAG
* *
52007391 GCATCCGAGCTCGTTCAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTCAGTTGAGT-CGAGTTCA-TTATGGAT-CGAACGCCCGAACTCGTTGAGT
52007456 TGAGTCCGAGTTC
63 TGAGTCCGAGTTC
52007469 ACTTATGGGC
Statistics
Matches: 70, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
90 22 0.31
91 8 0.11
92 8 0.11
93 32 0.46
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (90 bp):
GCATCCGAACTCGTTCAGTTGAGTCGAGTTCATTATGGATCGAACGCCCGAACTCGTTGAGTTGA
GTCCGAGTTCGTGAGATGTAACTAG
Found at i:52040053 original size:15 final size:14
Alignment explanation
Indices: 52040029--52040063 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
52040019 AGAATGCACA
52040029 GAAAAAAATTTTTGG
1 GAAAAAAA-TTTTGG
*
52040044 GAAAATAATTTTGG
1 GAAAAAAATTTTGG
52040058 GAAAAA
1 GAAAAA
52040064 TCGATTGATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.51, C:0.00, G:0.20, T:0.29
Consensus pattern (14 bp):
GAAAAAAATTTTGG
Found at i:52046332 original size:36 final size:36
Alignment explanation
Indices: 52046283--52046356 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
52046273 AGATACATAC
52046283 TCCCGAGCATATTTGTTTAATCGTAAGAATTCTCTT
1 TCCCGAGCATATTTGTTTAATCGTAAGAATTCTCTT
*
52046319 TCCCGAGCGTATTTGTTTAATCGTAAGAATTCTCTT
1 TCCCGAGCATATTTGTTTAATCGTAAGAATTCTCTT
52046355 TC
1 TC
52046357 GTACTCAGTG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.23, C:0.20, G:0.15, T:0.42
Consensus pattern (36 bp):
TCCCGAGCATATTTGTTTAATCGTAAGAATTCTCTT
Found at i:52047671 original size:30 final size:30
Alignment explanation
Indices: 52047637--52047695 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
52047627 CATTAACGTG
*
52047637 TGTCATACACGGTTGAGACACACTCCCGTA
1 TGTCATACACGGCTGAGACACACTCCCGTA
52047667 TGTCATACACGGCTGAGACACACTCCCGT
1 TGTCATACACGGCTGAGACACACTCCCGT
52047696 GTCTCTGCCC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.22
Consensus pattern (30 bp):
TGTCATACACGGCTGAGACACACTCCCGTA
Found at i:52048719 original size:40 final size:41
Alignment explanation
Indices: 52048601--52048738 Score: 127
Period size: 40 Copynumber: 3.3 Consensus size: 41
52048591 CAAAAATGAT
** * * *
52048601 TAGCCGAAGCTATAACGATATCGCACACTTAGTGCCATCACA
1 TAGCCGAAGCTATTCCAATATCGCACACTAAGTGCCA-CATA
* * * *
52048643 TTAAACTGAAACTA-TCTCAATATCGCACACTCAGTGCCACATA
1 -T-AGCCGAAGCTATTC-CAATATCGCACACTAAGTGCCACATA
* *
52048686 TAGCCGAAGCTATTCCAAT-TCGCACACTAAGTGCTATATA
1 TAGCCGAAGCTATTCCAATATCGCACACTAAGTGCCACATA
52048726 TAGCCGAAGCTAT
1 TAGCCGAAGCTAT
52048739 CTCGAAACGT
Statistics
Matches: 78, Mismatches: 14, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
40 31 0.40
41 12 0.15
42 3 0.04
43 4 0.05
44 28 0.36
ACGTcount: A:0.34, C:0.27, G:0.14, T:0.25
Consensus pattern (41 bp):
TAGCCGAAGCTATTCCAATATCGCACACTAAGTGCCACATA
Found at i:52048758 original size:40 final size:40
Alignment explanation
Indices: 52048660--52048759 Score: 105
Period size: 40 Copynumber: 2.5 Consensus size: 40
52048650 GAAACTATCT
* *
52048660 CAATATCGCACACTC-AGTGCCACATATAGCCGAAGCTATTC
1 CAATA-CGCACAC-CAAGTGCTATATATAGCCGAAGCTATTC
* *
52048701 CAATTCGCACACTAAGTGCTATATATAGCCGAAGCTATCTC
1 CAATACGCACACCAAGTGCTATATATAGCCGAAGCTAT-TC
* *
52048742 GAA-ACGTACACCAAGTGC
1 CAATACGCACACCAAGTGC
52048760 CAACATAGCT
Statistics
Matches: 49, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
40 41 0.84
41 8 0.16
ACGTcount: A:0.33, C:0.29, G:0.16, T:0.22
Consensus pattern (40 bp):
CAATACGCACACCAAGTGCTATATATAGCCGAAGCTATTC
Found at i:52058504 original size:27 final size:28
Alignment explanation
Indices: 52058448--52058572 Score: 200
Period size: 27 Copynumber: 4.5 Consensus size: 28
52058438 TAAATTGTGC
52058448 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
52058476 AGCACTAAGTGTGCGAG-TTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
52058503 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
52058531 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
52058558 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
52058573 GACTTAATAT
Statistics
Matches: 93, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
27 50 0.54
28 43 0.46
ACGTcount: A:0.26, C:0.14, G:0.30, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGACTATGT
Done.