Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 174 of 356
Found at i:56705168 original size:50 final size:50
Alignment explanation
Indices: 56705093--56705383 Score: 347
Period size: 50 Copynumber: 5.8 Consensus size: 50
56705083 TTGTGAATAT
*
56705093 ACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGATGAGGTC
1 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGATGAGGTC
* * *
56705143 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCATACTG-TTAAGTC
1 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TGATGAGGTC
* * * * * * * ** *
56705193 GCATGGGTAGTACTAAGTCCAGGCTACTATGCGTACTCA-ATTACTTCGATC
1 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAGATGA-TGAGGTC
56705244 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGATGAGGTC
1 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGATGAGGTC
*
56705294 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTGA--TC
1 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TGATGAGGTC
* * * *
56705343 GCATGTGTAGTACTAAGTGCAGGCTACTATGCGTATCAGAT
1 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT
56705384 AGTTTCGGCT
Statistics
Matches: 206, Mismatches: 29, Indels: 14
0.83 0.12 0.06
Matches are distributed among these distances:
48 1 0.00
49 39 0.19
50 120 0.58
51 46 0.22
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGATGAGGTC
Found at i:56705273 original size:101 final size:99
Alignment explanation
Indices: 56705099--56705383 Score: 324
Period size: 101 Copynumber: 2.8 Consensus size: 99
56705089 ATATACGTGT
** * **
56705099 GTAGTACTAAGTGTAGGCTACTACGTGTATCAGA-TGATGAGGTCACGTGTGTAGTACTAAGTGC
1 GTAGTACTAAGTCCAGGCTACTACGCGTATCAGATTCTTGA--TCACGTGTGTAGTACTAAGTGC
* * *
56705163 AGGCTACTACGTGTATCATACTG-TTAAGTCGCATGG
64 AGGCTACTACGTGTATCAGA-TGATGAAGTCACATGG
*
56705199 GTAGTACTAAGTCCAGGCTACTATGCGTACTCA-ATTACTTCGATCACGTGTGTAGTACTAAGTG
1 GTAGTACTAAGTCCAGGCTACTACGCGTA-TCAGATT-CTT-GATCACGTGTGTAGTACTAAGTG
* * *
56705263 CAGGCTACTACGTGTATCAGATGATGAGGTCACGTGT
63 CAGGCTACTACGTGTATCAGATGATGAAGTCACATGG
* * * * *
56705300 GTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTGATCGCATGTGTAGTACTAAGTGCAG
1 GTAGTACTAAGTCCAGGCTACTACGCGTATCAGATTCTTGATCACGTGTGTAGTACTAAGTGCAG
* *
56705365 GCTACTATGCGTATCAGAT
66 GCTACTACGTGTATCAGAT
56705384 AGTTTCGGCT
Statistics
Matches: 159, Mismatches: 20, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
99 41 0.26
100 33 0.21
101 82 0.52
102 1 0.01
103 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (99 bp):
GTAGTACTAAGTCCAGGCTACTACGCGTATCAGATTCTTGATCACGTGTGTAGTACTAAGTGCAG
GCTACTACGTGTATCAGATGATGAAGTCACATGG
Found at i:56705500 original size:27 final size:26
Alignment explanation
Indices: 56705470--56705521 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 26
56705460 GGGAAAATCG
56705470 ATAAAGTGGTAATATGTG-AAAGTTATT
1 ATAAAGT-G-AATATGTGCAAAGTTATT
* *
56705497 ATAAGGTGAATATGTGCAAATTTAT
1 ATAAAGTGAATATGTGCAAAGTTAT
56705522 GTTTATGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 8 0.36
26 8 0.36
27 6 0.27
ACGTcount: A:0.40, C:0.02, G:0.21, T:0.37
Consensus pattern (26 bp):
ATAAAGTGAATATGTGCAAAGTTATT
Found at i:56724406 original size:28 final size:28
Alignment explanation
Indices: 56724343--56724496 Score: 265
Period size: 28 Copynumber: 5.5 Consensus size: 28
56724333 ATATTAAGTC
* *
56724343 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
56724370 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
56724398 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
56724426 CGCACACTTAGTGCTACATAATCAAATT
1 CGCACACTTAGTGCTACATAATCAAACT
56724454 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
56724482 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
56724497 GTACTATTTA
Statistics
Matches: 122, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
27 22 0.18
28 100 0.82
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:56730626 original size:353 final size:350
Alignment explanation
Indices: 56729852--56731237 Score: 1438
Period size: 354 Copynumber: 3.9 Consensus size: 350
56729842 AGTAATCAAG
* * * ** * *
56729852 TCATTCATCACAAAGACGAACAACACGTGGCTACT-TTTACTTTTCCTCAATCATGTAATTCCAA
1 TCATTCATCACAAAGACGAAC-ACCCATGGC-AATGTTTACTTTTTATCAACCATGTAATGCCAA
* * * * * * *
56729916 TGAAAGGATATAATTTACCAATGTCTCAGG-ATATGAAATACATTATTTTAAATGACGCTACATA
64 TGAAAGGATATCATTTACCTATGTCTCAGGTA-ATGAATTCCACTATTGTGAATGACGCTACATA
* * * * * *** * * *
56729980 CTACAGAAGTCATACAGCCAATGCATCAAATTTTAGTTCCTTATCCATTTGAACTCAAGCTTTTA
128 TTACAAAAGTCATATACCCAATGCACCAGCCTTCAATTCCTTATCTATTTGAACTCAAGCTTTTA
* * * * *
56730045 CTTACATAAAAGTATACAAATCATGCATACATAGTCCATCATCCACTTAGGATTAAGGTATGCCA
193 CTTACATCAATGTATACGAGTCATGCATACATAG-CCATCATCCACTCAGGATTAAGGTATGCCA
* * * * * * * *
56730110 CACTTTTAATCTCACAAGTGAATAACTTCATAAGA-GGACTTAGGATCTCTTGTTCTTA-GACTA
257 CACTTTGAATGTCACAAGTGAATAAATCCATAA-ACGGATTTAGGATCTCTTCTTCTTAGGTCCA
* * **
56730173 GTCTAATGTACTATCAGTCCAGTTAGTCACAT
321 ATCTAATGTACTGTCAGT-CA-ACAGTCACAT
* * * * * * ** * *
56730205 TCATTTATCACAAATATGAACACCCCGTGGCCACGCATACATTTTATCAACCATGTAATTCCAAT
1 TCATTCATCACAAAGACGAACA-CCCATGGCAATGTTTACTTTTTATCAACCATGTAATGCCAAT
* * *
56730270 GAAAGGATATCATTTACCTATGTCTTAGGTAATGAATTCCATTATTGTGAATGACGTTACATATT
65 GAAAGGATATCATTTACCTATGTCTCAGGTAATGAATTCCACTATTGTGAATGACGCTACATATT
** ** * * * *
56730335 GTAAAAGTTGTATACCCAATGCA-CAGCCTTTAATTCCTTATTTATTTAAACTCAGGCTTTTACT
130 ACAAAAGTCATATACCCAATGCACCAGCCTTCAATTCCTTATCTATTTGAACTCAAGCTTTTACT
* *
56730399 TATATCAATGTATACGAGTCATGCATACATAGCCTATCATCCACTCAGTATTAAGGTATGCCACA
195 TACATCAATGTATACGAGTCATGCATACATAGCC-ATCATCCACTCAGGATTAAGGTATGCCACA
* * *
56730464 CTTTGAATGTCACAAGTGAATAAATCCATAAACAGATTTAGGATATCTTCTTCTTAGGTCTAATC
259 CTTTGAATGTCACAAGTGAATAAATCCATAAACGGATTTAGGATCTCTTCTTCTTAGGTCCAATC
*
56730529 TAATGTACTGTCAGTCTAACCAGCCACAT
324 TAATGTACTGTCAGTC-AA-CAGTCACAT
** **
56730558 TCATTCATCACAAAGACGAACGACCCATGGCAATGTTTACTTTTTAAAAACTTTGTAATGCCAAT
1 TCATTCATCACAAAGACGAAC-ACCCATGGCAATGTTTACTTTTTATCAACCATGTAATGCCAAT
** * *
56730623 GAAAGGATATCATTTAATTATATCTCAGGCAATGAATTCCACTATTGTGAATGACGCTACATATT
65 GAAAGGATATCATTTACCTATGTCTCAGGTAATGAATTCCACTATTGTGAATGACGCTACATATT
* * * * *
56730688 GCAAAAATCATATACCCAATACAACAGCCTTCAGTTCCTTATCTATTTGAACTCAAGCTTTTACT
130 ACAAAAGTCATATACCCAATGCACCAGCCTTCAATTCCTTATCTATTTGAACTCAAGCTTTTACT
* * *
56730753 TACATCAATGTATACGAGTCATGCATACATAGCCTATTATCCACTCAGGATTAAGGTATGTCATA
195 TACATCAATGTATACGAGTCATGCATACATAGCC-ATCATCCACTCAGGATTAAGGTATGCCACA
* * * * * * *
56730818 CTTTAAATGTCGCAAGTAAATAAATCCAAAAATGGATTCAGGATCTCTTCTTCTTAGGTCCAGTC
259 CTTTGAATGTCACAAGTGAATAAATCCATAAACGGATTTAGGATCTCTTCTTCTTAGGTCCAATC
* * * *
56730883 TAATGCACCGTCGGTGC-AGAGTCACAT
324 TAATGTACTGTCAGT-CAACAGTCACAT
* * * *
56730910 CCATTC-TTATCAAAGACGAACAACCCATGGCCACT-TTTACTTTTTTTATCAACCATGTATTGC
1 TCATTCATCA-CAAAGACGAAC-ACCCATGG-CAATGTTTAC--TTTTTATCAACCATGTAATGC
* * *
56730973 TAATGAAGGGATATCATTTACCTATGTCTCAGGTAATGAATTTCACTATTGTGAATGACGCTACA
61 CAATGAAAGGATATCATTTACCTATGTCTCAGGTAATGAATTCCACTATTGTGAATGACGCTACA
* ***
56731038 TATTACAAAAGTCGTATACCCAATGCACCAGCCTTCAATTCCTTATCTATTTGAACTCATTATTT
126 TATTACAAAAGTCATATACCCAATGCACCAGCCTTCAATTCCTTATCTATTTGAACTCAAGCTTT
* * * * ** * * * *
56731103 TACTTACGTTAGTGTATATGAGTCACACATACATAGTCAGCCATCCACTTAGGATTAAGGTACGC
191 TACTTACATCAATGTATACGAGTCATGCATACATAGCCA-TCATCCACTCAGGATTAAGGTATGC
* * * * *
56731168 CAAACATAGAATGTCACAAGTGAATAAATCTATAAACGGATTTAGGATCTCTTCTTCTTGGGTCC
255 CACACTTTGAATGTCACAAGTGAATAAATCCATAAACGGATTTAGGATCTCTTCTTCTTAGGTCC
56731233 AATCT
320 AATCT
56731238 GATCTACTAT
Statistics
Matches: 859, Mismatches: 158, Indels: 31
0.82 0.15 0.03
Matches are distributed among these distances:
351 5 0.01
352 172 0.20
353 277 0.32
354 404 0.47
355 1 0.00
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.33
Consensus pattern (350 bp):
TCATTCATCACAAAGACGAACACCCATGGCAATGTTTACTTTTTATCAACCATGTAATGCCAATG
AAAGGATATCATTTACCTATGTCTCAGGTAATGAATTCCACTATTGTGAATGACGCTACATATTA
CAAAAGTCATATACCCAATGCACCAGCCTTCAATTCCTTATCTATTTGAACTCAAGCTTTTACTT
ACATCAATGTATACGAGTCATGCATACATAGCCATCATCCACTCAGGATTAAGGTATGCCACACT
TTGAATGTCACAAGTGAATAAATCCATAAACGGATTTAGGATCTCTTCTTCTTAGGTCCAATCTA
ATGTACTGTCAGTCAACAGTCACAT
Found at i:56738651 original size:26 final size:25
Alignment explanation
Indices: 56738613--56738666 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 25
56738603 CTTTTATCTT
56738613 TTTTATCTTCTTTAAGTA-CATTTTA
1 TTTTATCTTCTTTAA-TATCATTTTA
* *
56738638 TTTTATTTTCCTTTAATATTATTTTA
1 TTTTATCTT-CTTTAATATCATTTTA
56738664 TTT
1 TTT
56738667 CTAGGTTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.22, C:0.09, G:0.02, T:0.67
Consensus pattern (25 bp):
TTTTATCTTCTTTAATATCATTTTA
Found at i:56740283 original size:47 final size:46
Alignment explanation
Indices: 56740137--56740291 Score: 125
Period size: 47 Copynumber: 3.3 Consensus size: 46
56740127 ACAATAGCCA
* * * * *
56740137 GTGTCTGGGACATGGCATCGTCATTGAGACGAGGGCTAGTGTAAGAC
1 GTGTCTGGGACATGGCATCGGC-TAGAGATGAGTGCCAGTGTAAGAC
* * * * * * *
56740184 GTGTCTGGGACAT-GCATCAGCCACA-TTACAATAGCCAGTGTATGACC
1 GTGTCTGGGACATGGCATCGGCTAGAGAT-GAGT-GCCAGTGTAAGA-C
*
56740231 ATGTCTGGGACATGGCATCGGCGTAGAGATGAGTGCCAGTGTAAGAC
1 GTGTCTGGGACATGGCATCGGC-TAGAGATGAGTGCCAGTGTAAGAC
*
56740278 GTGTCTAGGACATG
1 GTGTCTGGGACATG
56740292 TTCAGAATGA
Statistics
Matches: 80, Mismatches: 22, Indels: 12
0.70 0.19 0.11
Matches are distributed among these distances:
45 2 0.03
46 16 0.20
47 39 0.49
48 18 0.22
49 4 0.05
50 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.23
Consensus pattern (46 bp):
GTGTCTGGGACATGGCATCGGCTAGAGATGAGTGCCAGTGTAAGAC
Found at i:56746176 original size:95 final size:92
Alignment explanation
Indices: 56746063--56746427 Score: 326
Period size: 95 Copynumber: 3.9 Consensus size: 92
56746053 GTTATGTGAG
* * * *
56746063 AGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGAGAAGAGGGCTAGTGTAAGACGTG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TTGAGAAGAGTGCCAGTGTAAGACATG
56746128 TCTGGGACATGCATCAACCACATTACGAT
65 TCTGGGACATGCATC-ACCACATTACGAT
* * *
56746157 AGCCAAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTAGAGATGAGTGCCAGTGTAAGACGT
1 AGCC-AGTGTAAGACCATGTCTGGGACATGGCATCGGC-TTGAGAAGAGTGCCAGTGTAAGACAT
** * * *
56746222 GTCTGGGACATGCATTGGCCTTA-ATGATGGT
64 GTCTGGGACATGCA-TCACC--ACATTACGAT
* * **** *
56746253 AGCCAGTGTAAGA-CGTGTCTGGGACAT-GCATCGGC-TAAGCTTCGTGCTAGTGTAAGACATGT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGAGAAGAGTGCCAGTGTAAGACATGT
* * * *
56746315 CTGGGACATACAACAGCACATATACACGAG
66 CTGGGACATGCATCACCACAT-T--ACGAT
* *
56746345 AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGAAGA-TAGCCAGTGTAAGACC
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CTTGA-GAAGAGT-GCCAGTGTAAGA-C
*
56746409 ATCTCTGGGACATGGCATC
62 ATGTCTGGGACAT-GCATC
56746428 GACAACTTAA
Statistics
Matches: 215, Mismatches: 40, Indels: 27
0.76 0.14 0.10
Matches are distributed among these distances:
88 1 0.00
89 2 0.01
90 1 0.00
91 31 0.14
92 14 0.07
93 21 0.10
94 24 0.11
95 80 0.37
96 12 0.06
97 13 0.06
98 13 0.06
99 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.22
Consensus pattern (92 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGAGAAGAGTGCCAGTGTAAGACATGT
CTGGGACATGCATCACCACATTACGAT
Found at i:56746402 original size:49 final size:47
Alignment explanation
Indices: 56746063--56746428 Score: 241
Period size: 47 Copynumber: 7.7 Consensus size: 47
56746053 GTTATGTGAG
* * * *
56746063 AGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGA-GAAGAG
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTAGATGAAGAT
* * * ** * * *
56746111 GGCTAGTGTAAGACGTGTCTGGGACATGCATCAACC-ACATTACGAT
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTAGATGAAGAT
* *
56746157 AGCCAAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTAGA-GATGAGT
1 AGCC-AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTAGATGAAGA-T
* * * *
56746207 -GCCAGTGTAAGACGTGTCTGGGACATGCATTGGCCTTA-ATGATGGT
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-TAGATGAAGAT
* * **
56746253 AGCCAGTGTAAGACGTGTCTGGGACATGCATCGG-CTAAGCT-TCG-T
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-AGATGAAGAT
* * * * * *
56746298 -GCTAGTGTAAGACATGTCTGGGACATACAACAGCAC-ATAT-ACACGAG
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGC-CTAGATGA-A-GAT
* *
56746345 AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGAAGAT
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTAGATGAAGAT
*
56746394 AGCCAGTGTAAGACCATCTCTGGGACATGGCATCG
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCG
56746429 ACAACTTAAC
Statistics
Matches: 250, Mismatches: 47, Indels: 41
0.74 0.14 0.12
Matches are distributed among these distances:
44 30 0.12
45 3 0.01
46 25 0.10
47 73 0.29
48 45 0.18
49 62 0.25
50 11 0.04
51 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.22
Consensus pattern (47 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTAGATGAAGAT
Found at i:56752735 original size:30 final size:30
Alignment explanation
Indices: 56752699--56752758 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
56752689 TTCCCGAACC
56752699 TAGGGGCAAAA-GTGTAATTATGCAAAAGTT
1 TAGGGGCAAAATG-GTAATTATGCAAAAGTT
* *
56752729 TAGGGGCAAAATGGTAATTTTGCCAAAGTT
1 TAGGGGCAAAATGGTAATTATGCAAAAGTT
56752759 CATATTAGGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.37, C:0.08, G:0.27, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGGTAATTATGCAAAAGTT
Found at i:56754168 original size:27 final size:27
Alignment explanation
Indices: 56754150--56754427 Score: 180
Period size: 27 Copynumber: 10.3 Consensus size: 27
56754140 TACTGAAATG
**
56754150 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATAATA
* **
56754177 CCCTCGATTTATAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCATAATA
* * **
56754204 TCCTCGATTTACAGAATTA-CAGTTTTA
1 CCCTCGATTTATAGAATTACCA-TAATA
* * **
56754231 CCCTCGATTTACAGAATTACTATTTTA
1 CCCTCGATTTATAGAATTACCATAATA
* * * **
56754258 CCCTCGATTTACAGAATTATCGTTTTA
1 CCCTCGATTTATAGAATTACCATAATA
* * **
56754285 CCCTCAATTTATAGACTTACCATTTTA
1 CCCTCGATTTATAGAATTACCATAATA
* * * **
56754312 CCCGCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATAATA
** **
56754339 CCCTCGATTTGCAGAATTACCATTGTA
1 CCCTCGATTTATAGAATTACCATAATA
* * * *
56754366 CCCTCGATTTACAAAATTACTAAAATA
1 CCCTCGATTTATAGAATTACCATAATA
* * * * *
56754393 CCCTTGGTTTACAAAATTACCAAAATA
1 CCCTCGATTTATAGAATTACCATAATA
56754420 CCCTCGAT
1 CCCTCGAT
56754428 CAGTAAAATT
Statistics
Matches: 215, Mismatches: 34, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
26 1 0.00
27 213 0.99
28 1 0.00
ACGTcount: A:0.31, C:0.24, G:0.09, T:0.37
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCATAATA
Found at i:56754220 original size:54 final size:54
Alignment explanation
Indices: 56754150--56754385 Score: 321
Period size: 54 Copynumber: 4.4 Consensus size: 54
56754140 TACTGAAATG
* * *
56754150 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTA
* *
56754204 TCCTCGATTTACAGAATTA-CAGTTTTACCCTCGATTTACAGAATTACTATTTTA
1 CCCTCGATTTACAGAATTACCA-TTTTACCCTCGATTTACAGAATTACCATTTTA
* * * * *
56754258 CCCTCGATTTACAGAATTATCGTTTTACCCTCAATTTATAGACTTACCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTA
* * * *
56754312 CCCGCGATTTACAAAATTACCATTTTACCCTCGATTTGCAGAATTACCATTGTA
1 CCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTA
*
56754366 CCCTCGATTTACAAAATTAC
1 CCCTCGATTTACAGAATTAC
56754386 TAAAATACCC
Statistics
Matches: 159, Mismatches: 21, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
53 2 0.01
54 156 0.98
55 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.38
Consensus pattern (54 bp):
CCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTA
Found at i:56754265 original size:81 final size:80
Alignment explanation
Indices: 56754150--56754385 Score: 328
Period size: 81 Copynumber: 2.9 Consensus size: 80
56754140 TACTGAAATG
* * *
56754150 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTATCCTCGATTTA
1 CCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTA
56754215 CAGAATTACAGTTTTA
66 CAGAATTACA-TTTTA
* * *
56754231 CCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCAATTTA
1 CCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTA
* *
56754296 TAGACTTACCATTTTA
66 CAGAATTA-CATTTTA
* * * * *
56754312 CCCGCGATTTACAAAATTACCATTTTACCCTCGATTTGCAGAATTACCATTGTACCCTCGATTTA
1 CCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTA
*
56754377 CAAAATTAC
66 CAGAATTAC
56754386 TAAAATACCC
Statistics
Matches: 135, Mismatches: 19, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
80 1 0.01
81 132 0.98
82 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.38
Consensus pattern (80 bp):
CCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTA
CAGAATTACATTTTA
Found at i:56754395 original size:54 final size:54
Alignment explanation
Indices: 56754150--56754414 Score: 291
Period size: 54 Copynumber: 4.9 Consensus size: 54
56754140 TACTGAAATG
* * * * *
56754150 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTA
1 CCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCATTTTA
* * *
56754204 TCCTCGATTTACAGAATTAC-AGTTTTACCCTCGATTTACAGAATTACTATTTTA
1 CCCTCGATTTACAAAATTACTA-TTTTACCCTCGATTTACAGAATTACCATTTTA
* * * * *
56754258 CCCTCGATTTACAGAATTA-TCGTTTTACCCTCAATTTATAGACTTACCATTTTA
1 CCCTCGATTTACAAAATTACT-ATTTTACCCTCGATTTACAGAATTACCATTTTA
* * * *
56754312 CCCGCGATTTACAAAATTACCATTTTACCCTCGATTTGCAGAATTACCATTGTA
1 CCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCATTTTA
*** * * *
56754366 CCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCA
1 CCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCA
56754415 AAATACCCTC
Statistics
Matches: 178, Mismatches: 29, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
53 1 0.01
54 177 0.99
ACGTcount: A:0.31, C:0.23, G:0.09, T:0.37
Consensus pattern (54 bp):
CCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCATTTTA
Found at i:56754395 original size:81 final size:81
Alignment explanation
Indices: 56754130--56754414 Score: 302
Period size: 81 Copynumber: 3.5 Consensus size: 81
56754120 AATACTTTAG
* * * * * *
56754130 TTTACCAAATTACTGAAATGCCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATT
1 TTTACAAAATTACTAAAATACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAGAATT
*
56754195 ACCGTTTTATCCTCGA
66 ACCGTTTTACCCTCGA
* *** * *
56754211 TTTACAGAATTAC-AGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACAGAAT
1 TTTACAAAATTACTA-AAATACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAGAAT
* *
56754275 TATCGTTTTACCCTCAA
65 TACCGTTTTACCCTCGA
* * * * *** * *
56754292 TTTATAGACTTACCATTTTACCCGCGATTTACAAAATTACCATTTTACCCTCGATTTGCAGAATT
1 TTTACAAAATTACTAAAATACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAGAATT
* *
56754357 ACCATTGTACCCTCGA
66 ACCGTTTTACCCTCGA
* *
56754373 TTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCA
1 TTTACAAAATTACTAAAATACCCTCGATTTACAAAATTACCA
56754415 AAATACCCTC
Statistics
Matches: 169, Mismatches: 33, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
81 168 0.99
82 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.09, T:0.37
Consensus pattern (81 bp):
TTTACAAAATTACTAAAATACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAGAATT
ACCGTTTTACCCTCGA
Found at i:56754422 original size:54 final size:54
Alignment explanation
Indices: 56754310--56754614 Score: 181
Period size: 54 Copynumber: 5.6 Consensus size: 54
56754300 CTTACCATTT
* *** * * * ***
56754310 TACCCGCGATTTACAAAATTACCATTTTACCCTCGATTTGCAGAATTACCATTG
1 TACCCTCGATTTACAAAATTACCAAAATACCCTTGGTTTGCAAAATTACCAAAA
* *
56754364 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAATACCCTTGGTTTGCAAAATTACCAAAA
* * * * * *
56754418 TACCCTCGA-TCAGTAAAATTACCAAAATATCC-TGGTTTGTAAAATTGCTAAAA
1 TACCCTCGATTTA-CAAAATTACCAAAATACCCTTGGTTTGCAAAATTACCAAAA
* ** * * * *
56754471 TACCC-CTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAGTTACCAAAA
1 TACCCTC-GATTTACAAAATTACCAAAATACCCTTGGTTTGCAAAATTACCAAAA
* * * * *** * *
56754525 TACCACTGGTATGT--GAAATTACCGAAATACCCTCAATTTGTAAAATTACAAAAAA
1 TACC-CTCG-ATTTACAAAATTACCAAAATACCCTTGGTTTGCAAAATTAC-CAAAA
* * *
56754580 TGCCC-CTAATTTACAAAATTACAAAAATACCCTTG
1 TACCCTC-GATTTACAAAATTACCAAAATACCCTTG
56754615 ACTTTCTAAA
Statistics
Matches: 193, Mismatches: 47, Indels: 21
0.74 0.18 0.08
Matches are distributed among these distances:
52 1 0.01
53 46 0.24
54 119 0.62
55 25 0.13
56 2 0.01
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.30
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCAAAATACCCTTGGTTTGCAAAATTACCAAAA
Found at i:56754422 original size:81 final size:80
Alignment explanation
Indices: 56754319--56754502 Score: 197
Period size: 80 Copynumber: 2.3 Consensus size: 80
56754309 TTACCCGCGA
*** ** * ***
56754319 TTTACAAAATTACCATTTTACCCTCGATTTGCAGAATTACCATTGTACCCTCGATTTACAAAATT
1 TTTACAAAATTACCAAAATACCCTCGATCAGCAAAATTACCAAAATACCCT-GATTTACAAAATT
*
56754384 ACTAAAATACCCTTGG
65 ACTAAAATACCCCTGG
* * * ** *
56754400 TTTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACCAAAATATCCTGGTTTGTAAAATTG
1 TTTACAAAATTACCAAAATACCCTCGATCAGCAAAATTACCAAAATACCCTGATTTACAAAATTA
56754465 CTAAAATACCCCTGG
66 CTAAAATACCCCTGG
**
56754480 TTTGTAAAATTACCAAAATACCC
1 TTTACAAAATTACCAAAATACCC
56754503 CTAGTTTGTA
Statistics
Matches: 85, Mismatches: 18, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
80 45 0.53
81 40 0.47
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.32
Consensus pattern (80 bp):
TTTACAAAATTACCAAAATACCCTCGATCAGCAAAATTACCAAAATACCCTGATTTACAAAATTA
CTAAAATACCCCTGG
Found at i:56754435 original size:27 final size:27
Alignment explanation
Indices: 56754310--56754578 Score: 186
Period size: 27 Copynumber: 10.0 Consensus size: 27
56754300 CTTACCATTT
* ** ***
56754310 TACCCGCGATTTACAAAATTACCATTT
1 TACCCTCGATTTGTAAAATTACCAAAA
* * ***
56754337 TACCCTCGATTTGCAGAATTACCATTG
1 TACCCTCGATTTGTAAAATTACCAAAA
** *
56754364 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* * **
56754391 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
**
56754418 TACCCTCGATCAGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* * * *
56754445 TATCCT-GGTTTGTAAAATTGCTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
*
56754471 TACCC-CTGGTTTGTAAAATTACCAAAA
1 TACCCTC-GATTTGTAAAATTACCAAAA
* *
56754498 TACCC-CTAGTTTGTAAAGTTACCAAAA
1 TACCCTCGA-TTTGTAAAATTACCAAAA
* * * *
56754525 TACCACT-GGTATGTGAAATTACCGAAA
1 TACC-CTCGATTTGTAAAATTACCAAAA
* *
56754552 TACCCTCAATTTGTAAAATTACAAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
56754579 ATGCCCCTAA
Statistics
Matches: 193, Mismatches: 43, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
26 21 0.11
27 171 0.89
28 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.10, T:0.30
Consensus pattern (27 bp):
TACCCTCGATTTGTAAAATTACCAAAA
Found at i:56754470 original size:26 final size:27
Alignment explanation
Indices: 56754378--56754611 Score: 195
Period size: 27 Copynumber: 8.7 Consensus size: 27
56754368 CTCGATTTAC
* * **
56754378 AAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCCTGGTTTGT
* **
56754405 AAAATTACCAAAATA-CCCTCGATCAGT
1 AAAATTACCAAAATACCCCT-GGTTTGT
*
56754432 AAAATTACCAAAATA-TCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* *
56754458 AAAATTGCTAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
*
56754485 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* * *
56754512 AAAGTTACCAAAATACCACTGGTATGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* * **
56754539 GAAATTACCGAAATA-CCCTCAATTTGT
1 AAAATTACCAAAATACCCCT-GGTTTGT
* * ** **
56754566 AAAATTACAAAAAATGCCCCTAATTTAC
1 AAAATTAC-CAAAATACCCCTGGTTTGT
*
56754594 AAAATTACAAAAATACCC
1 AAAATTACCAAAATACCC
56754612 TTGACTTTCT
Statistics
Matches: 167, Mismatches: 35, Indels: 10
0.79 0.17 0.05
Matches are distributed among these distances:
26 23 0.14
27 123 0.74
28 17 0.10
29 4 0.02
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.28
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGGTTTGT
Found at i:56754514 original size:80 final size:81
Alignment explanation
Indices: 56754378--56754610 Score: 229
Period size: 80 Copynumber: 2.9 Consensus size: 81
56754368 CTCGATTTAC
* ** * **
56754378 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATA-CCCTCGATCAGTAAAATTACCA
1 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAG-TTTGTAAAATTACCA
* *
56754442 AAATATC-CTGGTTTGT
65 AAATACCACTGGTATGT
* *
56754458 AAAATTGCTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAGTTACCAA
1 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
56754523 AATACCACTGGTATGT
66 AATACCACTGGTATGT
* ** ** * * * ** *
56754539 GAAATTACCGAAATA-CCCTCAATTTGTAAAATTACAAAAAATGCCCCTAATTTACAAAATTACA
1 AAAATTACTAAAATACCCCT-GGTTTGTAAAATTAC-CAAAATACCCCTAGTTTGTAAAATTACC
56754603 AAAATACC
64 AAAATACC
56754611 CTTGACTTTC
Statistics
Matches: 126, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
80 60 0.48
81 37 0.29
82 29 0.23
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.28
Consensus pattern (81 bp):
AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
AATACCACTGGTATGT
Found at i:56754636 original size:29 final size:27
Alignment explanation
Indices: 56754540--56754667 Score: 87
Period size: 28 Copynumber: 4.6 Consensus size: 27
56754530 CTGGTATGTG
* * * *
56754540 AAATTACCGAAATACCCTCAATTTGTA
1 AAATTACTGAAATACCCTTACTTTATA
** * * * *
56754567 AAATTACAAAAAATGCCCCTAATTTACA
1 AAATTAC-TGAAATACCCTTACTTTATA
** *
56754595 AAATTACAAAAATACCCTTGACTTTCTA
1 AAATTACTGAAATACCCTT-ACTTTATA
*
56754623 AATATTA-TAGAAATACCATTACTTTATA
1 AA-ATTACT-GAAATACCCTTACTTTATA
56754651 AAATTACTGAAATACCC
1 AAATTACTGAAATACCC
56754668 ATGGTTTGTA
Statistics
Matches: 79, Mismatches: 17, Indels: 10
0.75 0.16 0.09
Matches are distributed among these distances:
27 29 0.37
28 37 0.47
29 13 0.16
ACGTcount: A:0.45, C:0.20, G:0.05, T:0.30
Consensus pattern (27 bp):
AAATTACTGAAATACCCTTACTTTATA
Found at i:56755422 original size:25 final size:25
Alignment explanation
Indices: 56755393--56755440 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
56755383 TTATAATGTG
56755393 AAAATGACTATTTTGCCCCTAGGTA
1 AAAATGACTATTTTGCCCCTAGGTA
*
56755418 AAAATGACTGTTTTGCCCCTAGG
1 AAAATGACTATTTTGCCCCTAGG
56755441 GTTTAATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (25 bp):
AAAATGACTATTTTGCCCCTAGGTA
Found at i:56755501 original size:20 final size:20
Alignment explanation
Indices: 56755467--56755542 Score: 104
Period size: 20 Copynumber: 3.9 Consensus size: 20
56755457 GATACGTGGG
56755467 GTATGATAT--ACATGAT-T
1 GTATGATATGCACATGATAT
56755484 GATATGATATGCACATGATAT
1 G-TATGATATGCACATGATAT
*
56755505 GCATGATATGCACATGATAT
1 GTATGATATGCACATGATAT
*
56755525 GTATGAAATGCACATGAT
1 GTATGATATGCACATGAT
56755543 GAATTCATAA
Statistics
Matches: 52, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
17 1 0.02
18 8 0.15
20 41 0.79
21 2 0.04
ACGTcount: A:0.37, C:0.11, G:0.20, T:0.33
Consensus pattern (20 bp):
GTATGATATGCACATGATAT
Found at i:56755503 original size:11 final size:11
Alignment explanation
Indices: 56755487--56755542 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
56755477 CATGATTGAT
56755487 ATGATATGCAC
1 ATGATATGCAC
56755498 ATGATATG--C
1 ATGATATGCAC
56755507 ATGATATGCAC
1 ATGATATGCAC
*
56755518 ATGATATG--T
1 ATGATATGCAC
*
56755527 ATGAAATGCAC
1 ATGATATGCAC
56755538 ATGAT
1 ATGAT
56755543 GAATTCATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:56755663 original size:25 final size:26
Alignment explanation
Indices: 56755592--56755688 Score: 153
Period size: 26 Copynumber: 3.8 Consensus size: 26
56755582 GAGGAAGTGC
56755592 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
56755618 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
56755644 GAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
56755669 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
56755689 ATTAAAGAGG
Statistics
Matches: 65, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
25 32 0.49
26 33 0.51
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:56755891 original size:42 final size:42
Alignment explanation
Indices: 56755832--56755924 Score: 150
Period size: 42 Copynumber: 2.2 Consensus size: 42
56755822 GTAGTATCCC
*
56755832 CAAATGGGCTTGCATACATTCATTGGTATTTCATGTGATACT
1 CAAATGGGCTTGCATACATTCATTGATATTTCATGTGATACT
* *
56755874 CAAATGGGCTTGCATACATTCATTGATATTTCATGTGTTATT
1 CAAATGGGCTTGCATACATTCATTGATATTTCATGTGATACT
*
56755916 GAAATGGGC
1 CAAATGGGC
56755925 CTATGGGCCA
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.27, C:0.15, G:0.20, T:0.38
Consensus pattern (42 bp):
CAAATGGGCTTGCATACATTCATTGATATTTCATGTGATACT
Found at i:56755983 original size:31 final size:30
Alignment explanation
Indices: 56755948--56756059 Score: 142
Period size: 31 Copynumber: 3.8 Consensus size: 30
56755938 CGTTTACAAT
56755948 AAAGGCTTCGGCCCAGTGATATGATTTATG
1 AAAGGCTTCGGCCCAGTGATATGATTTATG
*
56755978 AAAAGGCTTCGGCCCAGTGATTTGATTTATG
1 -AAAGGCTTCGGCCCAGTGATATGATTTATG
* *
56756009 AAAGGCTTCGGCCCAGT-A-ACCG-TTAAATG
1 AAAGGCTTCGGCCCAGTGATA-TGATT-TATG
56756038 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
56756060 TCGAGACTGA
Statistics
Matches: 73, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
28 2 0.03
29 24 0.33
30 18 0.25
31 29 0.40
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.27
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATG
Found at i:56757275 original size:25 final size:25
Alignment explanation
Indices: 56757246--56757293 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
56757236 TTATAATGAG
56757246 AAAATGACTGCTTTGCCCCTAGGTA
1 AAAATGACTGCTTTGCCCCTAGGTA
*
56757271 AAAATGACTGTTTTGCCCCTAGG
1 AAAATGACTGCTTTGCCCCTAGG
56757294 GTTTAATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
AAAATGACTGCTTTGCCCCTAGGTA
Found at i:56757354 original size:20 final size:20
Alignment explanation
Indices: 56757320--56757395 Score: 104
Period size: 20 Copynumber: 3.9 Consensus size: 20
56757310 GATACGTGGG
56757320 GTATGATAT--ACATGAT-T
1 GTATGATATGCACATGATAT
56757337 GATATGATATGCACATGATAT
1 G-TATGATATGCACATGATAT
*
56757358 GCATGATATGCACATGATAT
1 GTATGATATGCACATGATAT
*
56757378 GTATGAAATGCACATGAT
1 GTATGATATGCACATGAT
56757396 GAATTCATAA
Statistics
Matches: 52, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
17 1 0.02
18 8 0.15
20 41 0.79
21 2 0.04
ACGTcount: A:0.37, C:0.11, G:0.20, T:0.33
Consensus pattern (20 bp):
GTATGATATGCACATGATAT
Found at i:56757356 original size:11 final size:11
Alignment explanation
Indices: 56757340--56757395 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
56757330 CATGATTGAT
56757340 ATGATATGCAC
1 ATGATATGCAC
56757351 ATGATATG--C
1 ATGATATGCAC
56757360 ATGATATGCAC
1 ATGATATGCAC
*
56757371 ATGATATG--T
1 ATGATATGCAC
*
56757380 ATGAAATGCAC
1 ATGATATGCAC
56757391 ATGAT
1 ATGAT
56757396 GAATTCATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:56757516 original size:25 final size:26
Alignment explanation
Indices: 56757445--56757541 Score: 153
Period size: 26 Copynumber: 3.8 Consensus size: 26
56757435 GAGGAAGTGC
56757445 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
56757471 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
56757497 GAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
56757522 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
56757542 ATTAAAGAGG
Statistics
Matches: 65, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
25 32 0.49
26 33 0.51
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:56757744 original size:42 final size:42
Alignment explanation
Indices: 56757685--56757777 Score: 150
Period size: 42 Copynumber: 2.2 Consensus size: 42
56757675 GTAGTATCCC
*
56757685 CAAATGGGCTTGCATACATTCATTGGTATTTCATGTGATACT
1 CAAATGGGCTTGCATACATTCATTGATATTTCATGTGATACT
* *
56757727 CAAATGGGCTTGCATACATTCATTGATATTTCATGTGTTATT
1 CAAATGGGCTTGCATACATTCATTGATATTTCATGTGATACT
*
56757769 GAAATGGGC
1 CAAATGGGC
56757778 CTATGGGCCA
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.27, C:0.15, G:0.20, T:0.38
Consensus pattern (42 bp):
CAAATGGGCTTGCATACATTCATTGATATTTCATGTGATACT
Found at i:56757836 original size:31 final size:30
Alignment explanation
Indices: 56757801--56757912 Score: 142
Period size: 31 Copynumber: 3.8 Consensus size: 30
56757791 CGTTTACAAT
56757801 AAAGGCTTCGGCCCAGTGATATGATTTATG
1 AAAGGCTTCGGCCCAGTGATATGATTTATG
*
56757831 AAAAGGCTTCGGCCCAGTGATTTGATTTATG
1 -AAAGGCTTCGGCCCAGTGATATGATTTATG
* *
56757862 AAAGGCTTCGGCCCAGT-A-ACCG-TTAAATG
1 AAAGGCTTCGGCCCAGTGATA-TGATT-TATG
56757891 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
56757913 TCGAGACTGA
Statistics
Matches: 73, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
28 2 0.03
29 24 0.33
30 18 0.25
31 29 0.40
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.27
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATG
Found at i:56759128 original size:25 final size:25
Alignment explanation
Indices: 56759099--56759146 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
56759089 TTATAATGAG
56759099 AAAATGACTGCTTTGCCCCTAGGTA
1 AAAATGACTGCTTTGCCCCTAGGTA
*
56759124 AAAATGACTGTTTTGCCCCTAGG
1 AAAATGACTGCTTTGCCCCTAGG
56759147 GTTTAATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
AAAATGACTGCTTTGCCCCTAGGTA
Found at i:56759207 original size:20 final size:20
Alignment explanation
Indices: 56759173--56759231 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 20
56759163 GATACGTGGG
56759173 GTATGATAT--ACATGAT-T
1 GTATGATATGCACATGATAT
56759190 GATATGATATGCACATGATAT
1 G-TATGATATGCACATGATAT
*
56759211 GCATGATATGCACATGATAT
1 GTATGATATGCACATGATAT
56759231 G
1 G
56759232 GATGGAGGAA
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
17 1 0.03
18 8 0.22
20 26 0.70
21 2 0.05
ACGTcount: A:0.36, C:0.10, G:0.20, T:0.34
Consensus pattern (20 bp):
GTATGATATGCACATGATAT
Found at i:56759209 original size:11 final size:11
Alignment explanation
Indices: 56759193--56759231 Score: 64
Period size: 11 Copynumber: 3.7 Consensus size: 11
56759183 CATGATTGAT
56759193 ATGATATGCAC
1 ATGATATGCAC
56759204 ATGATATG--C
1 ATGATATGCAC
56759213 ATGATATGCAC
1 ATGATATGCAC
56759224 ATGATATG
1 ATGATATG
56759232 GATGGAGGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 9 0.35
11 17 0.65
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:56759495 original size:42 final size:42
Alignment explanation
Indices: 56759436--56759527 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
56759426 TAGTATCCCC
*
56759436 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
*
56759478 AAATGGGCTTGCATACATTCATTGATATTTCATGTGTTATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
56759520 AAATGGGC
1 AAATGGGC
56759528 CTATGGGCCA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.27, C:0.12, G:0.22, T:0.39
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
Found at i:56759618 original size:30 final size:31
Alignment explanation
Indices: 56759551--56759624 Score: 132
Period size: 31 Copynumber: 2.4 Consensus size: 31
56759541 CGTTTACAGT
56759551 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCTAGTGATATGATTTATGA
*
56759582 AAAGGCTTCGGCCTAGTGATTTGATTTATG-
1 AAAGGCTTCGGCCTAGTGATATGATTTATGA
56759612 AAAGGCTTCGGCC
1 AAAGGCTTCGGCC
56759625 CAGTAACCGT
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
30 13 0.31
31 29 0.69
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (31 bp):
AAAGGCTTCGGCCTAGTGATATGATTTATGA
Found at i:56762476 original size:46 final size:46
Alignment explanation
Indices: 56762402--56762570 Score: 141
Period size: 46 Copynumber: 3.7 Consensus size: 46
56762392 TATTTGGGCA
* * *
56762402 TCCGAACTTGTTGAGTTCAGTCCGAGTTCACTTATGGATGTGACTG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGATGGATGTGACTG
** * *
56762448 TCCGAACTCGTTGAGTTGAGTCTAAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGATGGATGTGACT--G
* *
56762493 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTGATGGATGCGAAC-G
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGATGGATGTG-ACTG
* **
56762541 -CCCAAGCTCGTTGAGTTGAGTATGAGTTCA
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCA
56762571 TTTATGGGCG
Statistics
Matches: 97, Mismatches: 17, Indels: 18
0.73 0.13 0.14
Matches are distributed among these distances:
43 8 0.08
45 6 0.06
46 47 0.48
47 26 0.27
48 4 0.04
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGATGGATGTGACTG
Found at i:56762569 original size:93 final size:93
Alignment explanation
Indices: 56762398--56762569 Score: 240
Period size: 93 Copynumber: 1.8 Consensus size: 93
56762388 AGGATATTTG
* * * *
56762398 GGCATCCGAACTTGTTGAGTTCAGTCCGAGTTCACTTATGGATGTGACTGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTCAGTCCGAGTTCACTGATGGATGCGACTGTCCCAACTCGTTGAG
*
56762463 TTGAGTCTAAGTTCGTGAGATGTAACTA
66 TTGAGTATAAGTTCGTGAGATGTAACTA
* *
56762491 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTGATGGATGCGAAC-G-CCCAAGCTCGTTG
1 GGCATCCGAACTCGTTGAGTTCAGTCCGAGTTCACTGATGGATGCG-ACTGTCCCAA-CTCGTTG
*
56762554 AGTTGAGTATGAGTTC
64 AGTTGAGTATAAGTTC
56762570 ATTTATGGGC
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
92 4 0.06
93 63 0.91
94 2 0.03
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTCAGTCCGAGTTCACTGATGGATGCGACTGTCCCAACTCGTTGAG
TTGAGTATAAGTTCGTGAGATGTAACTA
Found at i:56784964 original size:28 final size:28
Alignment explanation
Indices: 56784924--56785077 Score: 249
Period size: 28 Copynumber: 5.5 Consensus size: 28
56784914 TAAATTGTAC
56784924 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
56784952 AGCACTAAGTGTGCGAATTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
56784980 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
56785008 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
56785036 AGCACTAAGTGTGTC-AG-TTGATTATAT
1 AGCACTAAGTGTG-CGAGTTTGATTATGT
*
56785063 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
56785078 GACTTAATAT
Statistics
Matches: 120, Mismatches: 4, Indels: 5
0.93 0.03 0.04
Matches are distributed among these distances:
26 1 0.01
27 22 0.18
28 96 0.80
29 1 0.01
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.34
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:56794344 original size:25 final size:24
Alignment explanation
Indices: 56794316--56794362 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 24
56794306 ATTTGGGTTT
56794316 TTAATGGCT-CATTAAGTCACAAACG
1 TTAATGGCTCCATT-AGTC-CAAACG
56794341 TTAATGGCTCCATTAGTCCAAA
1 TTAATGGCTCCATTAGTCCAAA
56794363 TTTCCAAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 4 0.19
25 13 0.62
26 4 0.19
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30
Consensus pattern (24 bp):
TTAATGGCTCCATTAGTCCAAACG
Found at i:56798576 original size:26 final size:26
Alignment explanation
Indices: 56798547--56798599 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
56798537 AAACTATAAC
56798547 TCATATCTCACATATTATTCAATTCA
1 TCATATCTCACATATTATTCAATTCA
56798573 TCATATCTCACATATTATTCAATTCA
1 TCATATCTCACATATTATTCAATTCA
56798599 T
1 T
56798600 ACCTTATTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.34, C:0.23, G:0.00, T:0.43
Consensus pattern (26 bp):
TCATATCTCACATATTATTCAATTCA
Found at i:56798925 original size:43 final size:43
Alignment explanation
Indices: 56798878--56799002 Score: 162
Period size: 43 Copynumber: 2.9 Consensus size: 43
56798868 ATCACATATC
* * * *
56798878 GATGCCACTGTCCCAGACAGGGTCTTACACGAAATCA-ATTAA
1 GATGCCAATGTCCTAGACATGGTCTTACACGAAATCACAATAA
*
56798920 TGATGCCAATGTCCTAGACATGGTCTTACACGTAATCACAATAA
1 -GATGCCAATGTCCTAGACATGGTCTTACACGAAATCACAATAA
* * *
56798964 AATGCCAATGTCCTAGACATGGTCTTACATGTAATCACA
1 GATGCCAATGTCCTAGACATGGTCTTACACGAAATCACA
56799003 TCTCGGTAAC
Statistics
Matches: 74, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
43 70 0.95
44 4 0.05
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.26
Consensus pattern (43 bp):
GATGCCAATGTCCTAGACATGGTCTTACACGAAATCACAATAA
Found at i:56809106 original size:46 final size:46
Alignment explanation
Indices: 56809039--56809214 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
56809029 TGTAACCCGC
* * *
56809039 CCATAAGCGAACTCGGACTCAACTAAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* * *
56809085 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCG---GAC--GTTCGCAT
* *
56809135 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
56809178 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
56809215 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 3 0.03
45 2 0.02
46 61 0.56
47 27 0.25
48 2 0.02
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:56809205 original size:93 final size:93
Alignment explanation
Indices: 56809046--56809217 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
56809036 CGCCCATAAG
* *
56809046 CGAACTCGGACTCAACTAAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTAAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
56809111 ACGAGTTCGAATGCCTAGTTACATCTCA
66 ACGAGTTCGAATGCCTAGTTACATCTCA
* *
56809139 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTAAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
56809204 ACGAGTTCGGATGC
66 ACGAGTTCGAATGC
56809218 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTAAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGAATGCCTAGTTACATCTCA
Found at i:56809233 original size:46 final size:46
Alignment explanation
Indices: 56809088--56809226 Score: 135
Period size: 47 Copynumber: 3.0 Consensus size: 46
56809078 TTCGCATCCA
*
56809088 TAAGTGAACTCGGACTCAACTCAACGAGTTCGAATGC-CTAGTTA-CATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATC
* * * * *
56809136 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA--
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATC
56809181 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
56809227 CTAGTGACAT
Statistics
Matches: 74, Mismatches: 10, Indels: 16
0.74 0.10 0.16
Matches are distributed among these distances:
44 8 0.11
45 2 0.03
46 28 0.38
47 29 0.39
48 2 0.03
49 4 0.05
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
Found at i:56811652 original size:15 final size:15
Alignment explanation
Indices: 56811613--56811653 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
56811603 CAAGGAAACC
56811613 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
56811628 -AGATAGAGAAATCCA
1 GA-ATAAAGAAATCCA
56811643 GAATAAAGAAA
1 GAATAAAGAAA
56811654 CCTAAGATAC
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 1 0.05
15 20 0.91
16 1 0.05
ACGTcount: A:0.61, C:0.10, G:0.17, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:56814727 original size:93 final size:93
Alignment explanation
Indices: 56814614--56814785 Score: 319
Period size: 93 Copynumber: 1.8 Consensus size: 93
56814604 CGCCCATAAG
56814614 CGAACTCGGACTCAACTCAACGAGCTC-GAGCATTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTCGGA-CATTCGCATCCATAAGTGAACTCGGACTCAACTC
56814678 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
56814707 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
56814772 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
56814786 TCAACCATCC
Statistics
Matches: 77, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
93 75 0.97
94 2 0.03
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:56814781 original size:46 final size:47
Alignment explanation
Indices: 56814607--56814782 Score: 229
Period size: 46 Copynumber: 3.8 Consensus size: 47
56814597 TGTAACCCGC
*
56814607 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC-GAGCATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCAT
* *
56814653 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA-G-C-A-TTCGCAT
*
56814703 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-CATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCAT
*
56814746 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
56814783 TGCTCAACCA
Statistics
Matches: 113, Mismatches: 8, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.54
47 31 0.27
48 3 0.03
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (47 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCAT
Found at i:56817136 original size:16 final size:17
Alignment explanation
Indices: 56817104--56817136 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
56817094 TATAAGATAC
*
56817104 TTGTGATATATAATATT
1 TTGTGATATAAAATATT
56817121 TTGTGAT-TAAAATATT
1 TTGTGATATAAAATATT
56817137 GATTTAAGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.52
Consensus pattern (17 bp):
TTGTGATATAAAATATT
Found at i:56817941 original size:9 final size:10
Alignment explanation
Indices: 56817920--56817944 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
56817910 CACGAAAAAA
56817920 TTTTCTAATT
1 TTTTCTAATT
56817930 TTTTCTAATT
1 TTTTCTAATT
56817940 TTTTC
1 TTTTC
56817945 CAAAACTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.16, C:0.12, G:0.00, T:0.72
Consensus pattern (10 bp):
TTTTCTAATT
Found at i:56818948 original size:14 final size:14
Alignment explanation
Indices: 56818929--56818962 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
56818919 GCCCAAAGTG
*
56818929 GATGATATGATTAT
1 GATGATATGACTAT
*
56818943 GATGATATTACTAT
1 GATGATATGACTAT
56818957 GATGAT
1 GATGAT
56818963 GAAAGTCGTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.35, C:0.03, G:0.21, T:0.41
Consensus pattern (14 bp):
GATGATATGACTAT
Found at i:56819848 original size:15 final size:15
Alignment explanation
Indices: 56819828--56819865 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
56819818 ATATCGTATC
56819828 TTGGATTTTTCTATT
1 TTGGATTTTTCTATT
**
56819843 TTGGATTCCTCTATT
1 TTGGATTTTTCTATT
56819858 TTGG-TTTT
1 TTGGATTTT
56819866 CTTGTCATCT
Statistics
Matches: 19, Mismatches: 4, Indels: 1
0.79 0.17 0.04
Matches are distributed among these distances:
14 2 0.11
15 17 0.89
ACGTcount: A:0.11, C:0.11, G:0.16, T:0.63
Consensus pattern (15 bp):
TTGGATTTTTCTATT
Found at i:56823074 original size:45 final size:44
Alignment explanation
Indices: 56823002--56823087 Score: 154
Period size: 45 Copynumber: 1.9 Consensus size: 44
56822992 GAACTATGTG
56823002 ATTTGAACTCATGAGTTGTGGTCTGAGTTCATGATATATGTGAC
1 ATTTGAACTCATGAGTTGTGGTCTGAGTTCATGATATATGTGAC
*
56823046 ATTTGAACTCATTGAGTTGTGGTTTGAGTTCATGATATATGT
1 ATTTGAACTCA-TGAGTTGTGGTCTGAGTTCATGATATATGT
56823088 TCCACATGTT
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
44 11 0.28
45 29 0.73
ACGTcount: A:0.24, C:0.09, G:0.24, T:0.42
Consensus pattern (44 bp):
ATTTGAACTCATGAGTTGTGGTCTGAGTTCATGATATATGTGAC
Found at i:56824168 original size:22 final size:22
Alignment explanation
Indices: 56824125--56824168 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
56824115 ATTTGCTAAG
*
56824125 AATGTGTCTTAAGAAAGGATGC
1 AATGTGTCTTAAGAAAAGATGC
*
56824147 AATGTGTCTTAAGAAAATATGC
1 AATGTGTCTTAAGAAAAGATGC
56824169 TTTATCATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.30
Consensus pattern (22 bp):
AATGTGTCTTAAGAAAAGATGC
Found at i:56825295 original size:27 final size:27
Alignment explanation
Indices: 56825254--56825426 Score: 256
Period size: 27 Copynumber: 6.4 Consensus size: 27
56825244 TGGATAAGTT
56825254 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
**
56825281 GTAGAATTATTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
56825308 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
56825335 ATAGAATTACTGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
56825362 GTAGAAATACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
56825389 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
56825416 GTAAAATTACC
1 GTAGAATTACC
56825427 ATTTTTCCCC
Statistics
Matches: 130, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 130 1.00
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:56826207 original size:27 final size:26
Alignment explanation
Indices: 56826155--56826214 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
56826145 CGCCATATAT
*
56826155 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
56826181 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
56826208 ATATCTG
1 ATATCTG
56826215 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:56834611 original size:45 final size:45
Alignment explanation
Indices: 56834440--56834608 Score: 223
Period size: 45 Copynumber: 3.8 Consensus size: 45
56834430 TTTCACCGGT
* * *
56834440 ATTATAGCCTGTTAGGCTCGAAA-GCCCGAATAGTATCTTACCGGC
1 ATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAGTATCTCATCGGC
* ** *
56834485 ATTGTAGCCTATTAGGCTCAAAGGCCTGAATAGTATCTCATCGGC
1 ATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCATCGGC
* * *
56834530 ATTATAGCTTGCTAGGCTCAAAGGCCCGAATAGTGTCTCATCGGT
1 ATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCATCGGC
*
56834575 ATTATAGCCTGCTAGGCTCAAAGGCCCAAATAGT
1 ATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT
56834609 GTCGTACGAT
Statistics
Matches: 109, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
44 3 0.03
45 106 0.97
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.27
Consensus pattern (45 bp):
ATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCATCGGC
Found at i:56842337 original size:12 final size:13
Alignment explanation
Indices: 56842320--56842351 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
56842310 ATAGCACATT
56842320 TCAAAAC-ATGCA
1 TCAAAACTATGCA
56842332 TCAAAACTATGCA
1 TCAAAACTATGCA
56842345 -CAAAACT
1 TCAAAACT
56842352 TAACATTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.50, C:0.25, G:0.06, T:0.19
Consensus pattern (13 bp):
TCAAAACTATGCA
Found at i:56849596 original size:22 final size:22
Alignment explanation
Indices: 56849569--56849691 Score: 58
Period size: 22 Copynumber: 5.3 Consensus size: 22
56849559 ATGTGCATAT
56849569 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
56849591 ATGTGATGAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
*
56849615 TATGTGATAAGGCCAAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
* *
56849638 ATGTGATGAATGTG-AGCAT-G-CA
1 ATGTGAT-AA-G-GCCGAATGGCCA
56849660 TATGTGTGATAAGGCCGAATGGCCA
1 -A--TGTGATAAGGCCGAATGGCCA
56849685 ATGTGAT
1 ATGTGAT
56849692 GAATATGAAC
Statistics
Matches: 73, Mismatches: 12, Indels: 32
0.62 0.10 0.27
Matches are distributed among these distances:
22 24 0.33
23 17 0.23
24 16 0.22
25 16 0.22
ACGTcount: A:0.33, C:0.13, G:0.29, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:56849613 original size:47 final size:47
Alignment explanation
Indices: 56849553--56849737 Score: 289
Period size: 47 Copynumber: 3.9 Consensus size: 47
56849543 GATAATTGTG
**
56849553 ATGTGAATGTGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
*
56849600 ATGTGAACATGCATATATGTGATAAGGCCAAATGGCCAATGTGATGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* *
56849647 ATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* * * *
56849694 ATATGAACATGCATATATGTGGTAAAGCCGAATGGCTAATGTGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGA
56849738 AATATATGTA
Statistics
Matches: 126, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 126 1.00
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.26
Consensus pattern (47 bp):
ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
Found at i:56849992 original size:37 final size:37
Alignment explanation
Indices: 56849942--56850054 Score: 181
Period size: 37 Copynumber: 3.1 Consensus size: 37
56849932 GGAAATATAT
*
56849942 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
56849979 TCCGGGTAAGACCCAATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
56850016 TCCGGGTAAGACCCGATAATTTCGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
56850053 TC
1 TC
56850055 TGAGCTAAAG
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 70 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:56856125 original size:22 final size:22
Alignment explanation
Indices: 56856097--56856218 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
56856087 TTCCACATCC
56856097 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
56856119 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
56856143 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
56856166 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
56856190 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
56856213 ATCACA
1 ATCACA
56856219 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:56856132 original size:47 final size:47
Alignment explanation
Indices: 56856069--56856502 Score: 581
Period size: 47 Copynumber: 9.1 Consensus size: 47
56856059 CCCTTCGGGA
* * *
56856069 CTTATCACATTTATACACT-TCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
56856116 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
56856163 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* * *
56856210 CTTATCACACATACACATGTTCACATTCATCAAATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
*
56856257 CTTATCACACATACT-CATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATA-TACATGTTCACATTCATCACATTGGCCATTCGGC
* * **
56856304 CTTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTTAGC
1 C-TTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
56856352 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
56856399 CTTATCACATATATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC----ATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* * *
56856450 CTTTTCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
56856497 CTTATC
1 CTTATC
56856503 TGTAACACCC
Statistics
Matches: 350, Mismatches: 28, Indels: 18
0.88 0.07 0.05
Matches are distributed among these distances:
46 1 0.00
47 265 0.76
48 41 0.12
51 42 0.12
52 1 0.00
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
Found at i:56856371 original size:142 final size:142
Alignment explanation
Indices: 56856090--56856502 Score: 640
Period size: 142 Copynumber: 2.9 Consensus size: 142
56856080 TATACACTTC
*
56856090 CACATCCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATTGGC
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATTGGC
**
56856155 CATTCGGCC-TTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
66 CATTCGGCCTTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTTAGCCTTATCACA
56856219 CATACACATGTT
131 CATACACATGTT
* *
56856231 CACATTCATCAAATTGGCCATTCGGCCTTATCACACATACT-CA-TGTTCACATTCATCACATTG
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATA-TACACT-TTCACATTCATCACATTG
56856294 GCCATTCGGCCTTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTTAGCCTTATCA
64 GCCATTCGGCCTTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTTAGCCTTATCA
56856359 CACATACACATGTT
129 CACATACACATGTT
56856373 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATATATACACTTTCACATTCATCACAT
1 CACATTCATCACATTGGCCATTCGGCCTTATCAC----ATATATACACTTTCACATTCATCACAT
* * *
56856438 TGGCCATTCGGCCTTT-TCACATATATACACT-TTCACATTCATCACATCGGCCA-TTAGGCCTT
62 TGGCCATTCGGCCTTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTTA-GCCTT
56856500 ATC
125 ATC
56856503 TGTAACACCC
Statistics
Matches: 251, Mismatches: 10, Indels: 18
0.90 0.04 0.06
Matches are distributed among these distances:
140 1 0.00
141 67 0.27
142 99 0.39
144 3 0.01
145 41 0.16
146 39 0.16
147 1 0.00
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.33
Consensus pattern (142 bp):
CACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATTGGC
CATTCGGCCTTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTTAGCCTTATCACA
CATACACATGTT
Found at i:56857915 original size:40 final size:40
Alignment explanation
Indices: 56857870--56858813 Score: 1613
Period size: 40 Copynumber: 23.6 Consensus size: 40
56857860 CAAGCTCAAT
* *
56857870 TGCCTTCGGGTCTTAACCCGGGTATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
56857910 TGCCTTCGGGTCTTAGCCCGGATATATCAACTT-GCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAA-TTCGCACAAA
56857950 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* * *
56857990 CGCCGTCGGGTCTTAG-CCGGATATATCAGTTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
56858029 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
56858069 TGCCTTTGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
56858109 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
56858149 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
56858189 TGCCTTCGGGTCTTAACCCGGATATATCAGTTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
56858229 TGCCTTCGGGTCTTATCCCGGATATATCAATTCACACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
56858269 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
56858309 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
56858349 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
56858389 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
56858429 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* * *
56858469 TGCCTTCGGGTCTTAACCCGGATATATCAGTTCGTACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
56858509 TGCCTTCGGGTCTTATCCCGAATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
56858549 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
56858589 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
56858629 TGCCTTCGGGTCTTAGCCCGAATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
56858669 TGCCTTCGGGTCTTAACCCGGATACATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
56858709 TGCCTTCGGGTCTTAACCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
56858749 TGCCTTCGGGTCCTAACCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
56858789 TGCCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
56858814 CATTCAAATG
Statistics
Matches: 863, Mismatches: 38, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
39 37 0.04
40 824 0.95
41 2 0.00
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
Found at i:56870919 original size:12 final size:13
Alignment explanation
Indices: 56870902--56870933 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
56870892 ATAGCACATT
56870902 TCAAAAC-ATGCA
1 TCAAAACTATGCA
56870914 TCAAAACTATGCA
1 TCAAAACTATGCA
56870927 -CAAAACT
1 TCAAAACT
56870934 TAACATTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.50, C:0.25, G:0.06, T:0.19
Consensus pattern (13 bp):
TCAAAACTATGCA
Found at i:56872801 original size:93 final size:93
Alignment explanation
Indices: 56872689--56872861 Score: 319
Period size: 93 Copynumber: 1.9 Consensus size: 93
56872679 AACTGTTACA
* * *
56872689 TTATCAATACAACCTATTTCAATATGTATTTTAACTACCATGAATCACATACAAAGCTTGACTCA
1 TTATCAATACAACCCATTTCAATATGTATTTTAACTACCATCAATCACACACAAAGCTTGACTCA
56872754 TAAATCATTTATTAGCCACATATCATAC
66 TAAATCATTTATTAGCCACATATCATAC
56872782 TTATCAATACAACCCATTTCAATATGTATTTTAACTACCATCAATCACACACAAAGCTTGACTCA
1 TTATCAATACAACCCATTTCAATATGTATTTTAACTACCATCAATCACACACAAAGCTTGACTCA
56872847 TAAATCATTTATTAG
66 TAAATCATTTATTAG
56872862 TCATTCACTT
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 77 1.00
ACGTcount: A:0.39, C:0.22, G:0.05, T:0.34
Consensus pattern (93 bp):
TTATCAATACAACCCATTTCAATATGTATTTTAACTACCATCAATCACACACAAAGCTTGACTCA
TAAATCATTTATTAGCCACATATCATAC
Found at i:56874873 original size:46 final size:45
Alignment explanation
Indices: 56874818--56875078 Score: 181
Period size: 46 Copynumber: 5.6 Consensus size: 45
56874808 TTATTTGTGT
*
56874818 GCTAGTGTAAGATATGTCTGGGACATGCATCGGCCAAAGTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAAAG-ATGAGA
* * * * * *
56874864 GCCAGTGTAAGACCATGTTTAGGACATGGCATCGG-TATTGAGACGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA--AAGATGAGA
* * * * *
56874912 GCTAGTGTAAGACATGTTTGGGACATACATTGACCTCAAGATGTA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCC-AAAGATG-AGA
* * *
56874958 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTG-
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCA-AAGATGAGA
* * *
56875003 TC-AGTGTAAGACCATGTCTAGGACATGGCATCGG-CACAGTTATGTGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCAAAG--A--TGAGA
*
56875052 GCTAGTGTAAGACCATGTCTAGGACAT
1 GCTAGTGTAAGA-CATGTCTGGGACAT
56875079 TGTGTCGGCC
Statistics
Matches: 168, Mismatches: 30, Indels: 30
0.74 0.13 0.13
Matches are distributed among these distances:
44 11 0.07
45 15 0.09
46 63 0.38
47 26 0.15
48 26 0.15
49 3 0.02
50 24 0.14
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAAAGATGAGA
Found at i:56876848 original size:43 final size:43
Alignment explanation
Indices: 56876801--56876900 Score: 139
Period size: 43 Copynumber: 2.3 Consensus size: 43
56876791 CAGATATGGT
* *
56876801 CTTACATGAAATCGATT-ATCGATGCCACTGTCCCAGACAGGGC
1 CTTACATGAAATCAATTAAT-GATGCCAATGTCCCAGACAGGGC
* *
56876844 CTTACATGAAATCAATTAATGATGCCAATGTCCCAGACATGGT
1 CTTACATGAAATCAATTAATGATGCCAATGTCCCAGACAGGGC
*
56876887 CTTACATGTAATCA
1 CTTACATGAAATCA
56876901 CATCTCGATA
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
43 49 0.96
44 2 0.04
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (43 bp):
CTTACATGAAATCAATTAATGATGCCAATGTCCCAGACAGGGC
Found at i:56879221 original size:79 final size:79
Alignment explanation
Indices: 56879078--56879287 Score: 260
Period size: 79 Copynumber: 2.7 Consensus size: 79
56879068 TGAAATTGTA
** * * * *
56879078 TTCTGTTTGTAAATAGAAATCAATTGAACAATTCTATTTTAGGATTTTATTCCTGCAGTCCAACA
1 TTCTGTTTCCAAATAGAAATCAATTAAACAATTATGTTTTAGGATTTTATTCCTACAGTCCAACA
*
56879143 -AATTTTTTTCATTT
66 GAATTTGTTTCA-TT
* * * * *
56879157 TTCTTTTTCCAAATAGAAATTAATTAAACAATTTTGTTTTAGGATTTTATTCCTACTGTTCAACA
1 TTCTGTTTCCAAATAGAAATCAATTAAACAATTATGTTTTAGGATTTTATTCCTACAGTCCAACA
*
56879222 GAATTTGTTTGATT
66 GAATTTGTTTCATT
* * *
56879236 TTCTGTTTCCAAGTAAAAATCAATTAAACAATTATGTTTTAGGATTCTATTC
1 TTCTGTTTCCAAATAGAAATCAATTAAACAATTATGTTTTAGGATTTTATTC
56879288 TTACCATTTA
Statistics
Matches: 112, Mismatches: 18, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
79 103 0.92
80 9 0.08
ACGTcount: A:0.31, C:0.13, G:0.10, T:0.46
Consensus pattern (79 bp):
TTCTGTTTCCAAATAGAAATCAATTAAACAATTATGTTTTAGGATTTTATTCCTACAGTCCAACA
GAATTTGTTTCATT
Found at i:56879304 original size:79 final size:79
Alignment explanation
Indices: 56879078--56879320 Score: 240
Period size: 79 Copynumber: 3.1 Consensus size: 79
56879068 TGAAATTGTA
** * * * * * * *
56879078 TTCTGTTTGTAAATAGAAATCAATTGAACAATTCTATTTTAGGATTTTATTCCT-GCAGTCCAAC
1 TTCTGTTTCCAAATAAAAATCAATTAAACAATTATGTTTTAGGATTCTATTCCTACCA-TTCAAC
* *
56879142 A-AATTTTTTTCATTT
65 AGAATTTATTTGA-TT
* * * * * **
56879157 TTCTTTTTCCAAATAGAAATTAATTAAACAATTTTGTTTTAGGATTTTATTCCTACTGTTCAACA
1 TTCTGTTTCCAAATAAAAATCAATTAAACAATTATGTTTTAGGATTCTATTCCTACCATTCAACA
*
56879222 GAATTTGTTTGATT
66 GAATTTATTTGATT
* * * *
56879236 TTCTGTTTCCAAGTAAAAATCAATTAAACAATTATGTTTTAGGATTCTATTCTTACCATTTAATA
1 TTCTGTTTCCAAATAAAAATCAATTAAACAATTATGTTTTAGGATTCTATTCCTACCATTCAACA
56879301 GAATTTATTTGATT
66 GAATTTATTTGATT
56879315 TT-TGTT
1 TTCTGTT
56879321 GTTAACACTA
Statistics
Matches: 137, Mismatches: 25, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
78 4 0.03
79 124 0.91
80 9 0.07
ACGTcount: A:0.31, C:0.12, G:0.10, T:0.47
Consensus pattern (79 bp):
TTCTGTTTCCAAATAAAAATCAATTAAACAATTATGTTTTAGGATTCTATTCCTACCATTCAACA
GAATTTATTTGATT
Found at i:56883224 original size:46 final size:46
Alignment explanation
Indices: 56883157--56883329 Score: 179
Period size: 46 Copynumber: 3.7 Consensus size: 46
56883147 AACCCGCCCC
* *
56883157 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCA
* * * * * *
56883203 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCTAG-TTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-TTCGCATCCA
* * * *
56883249 TTTCA-CGAACTCGGACACAACTCAACGAGTTCGGACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCA
* *
56883296 TAAGTGAACTCGGACTCAACTCCACGAGTCCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
56883330 TGCTCAACCA
Statistics
Matches: 99, Mismatches: 23, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
45 2 0.02
46 63 0.64
47 32 0.32
48 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCA
Found at i:56883332 original size:93 final size:93
Alignment explanation
Indices: 56883162--56883332 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
56883152 GCCCCTAAGT
* * *
56883162 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACACAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
56883227 CGAGTTCAGATGCCTAGTTACATTTCAC
66 CGAGTCCAGATGCCTAGTTACATTTCAC
* *
56883255 GAACTCGGACACAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCCA
1 GAACTCGGACACAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
56883320 CGAGTCCGGATGC
66 CGAGTCCAGATGC
56883333 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (93 bp):
GAACTCGGACACAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTCCAGATGCCTAGTTACATTTCAC
Found at i:56890390 original size:93 final size:93
Alignment explanation
Indices: 56890280--56890450 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
56890270 GCCCCTAAGT
* * * *
56890280 GAACTCGGACTCAACTCAACGAGCTCGGGA-GTTCGCATTCATAAGTGAACTTGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTC-AGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
56890344 ACGAGTTCAGATGCCTAGTTACATTTCAC
65 ACGAGTTCAGATGCCTAGTTACATTTCAC
* *
56890373 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCCA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
56890438 CGAGTTCAGATGC
66 CGAGTTCAGATGC
56890451 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCAGATGCCTAGTTACATTTCAC
Found at i:56890441 original size:46 final size:45
Alignment explanation
Indices: 56890275--56890447 Score: 165
Period size: 46 Copynumber: 3.8 Consensus size: 45
56890265 AACCCGCCCC
* * *
56890275 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGA-GTTCGCATTCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-AGACATTCGCA-TCA
* * *
56890321 TAAGTGAACTTGGACTCAACTCAACGAGTTCAGATGCCTAGTT-ACAT-T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGA---C-A-TTCGCATCA
* *
56890369 TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT-CA
*
56890414 TAAGTGAACTCGGACTCAACTCCACGAGTTCAGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGA
56890448 TGCTCAACCA
Statistics
Matches: 103, Mismatches: 14, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 4 0.04
46 57 0.55
47 28 0.27
48 2 0.02
49 1 0.01
50 2 0.02
51 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.23
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCA
Found at i:56898093 original size:51 final size:51
Alignment explanation
Indices: 56898036--56898140 Score: 201
Period size: 51 Copynumber: 2.1 Consensus size: 51
56898026 ATTGCTTAGC
*
56898036 TATGTTTTATTATTTTTTGTAATTTGACTTTTTATTAAAAAAATGTATACA
1 TATGTTTCATTATTTTTTGTAATTTGACTTTTTATTAAAAAAATGTATACA
56898087 TATGTTTCATTATTTTTTGTAATTTGACTTTTTATTAAAAAAATGTATACA
1 TATGTTTCATTATTTTTTGTAATTTGACTTTTTATTAAAAAAATGTATACA
56898138 TAT
1 TAT
56898141 TAGTAGTAGT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.33, C:0.05, G:0.08, T:0.54
Consensus pattern (51 bp):
TATGTTTCATTATTTTTTGTAATTTGACTTTTTATTAAAAAAATGTATACA
Found at i:56900341 original size:21 final size:21
Alignment explanation
Indices: 56900302--56900341 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
56900292 ATTGTTGGAA
*
56900302 GTAACAATGAAATGGTAAAAC
1 GTAACAAAGAAATGGTAAAAC
* *
56900323 GTAACAAAGACATGTTAAA
1 GTAACAAAGAAATGGTAAA
56900342 TTCAAGATTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.53, C:0.10, G:0.17, T:0.20
Consensus pattern (21 bp):
GTAACAAAGAAATGGTAAAAC
Found at i:56903094 original size:13 final size:13
Alignment explanation
Indices: 56903076--56903100 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
56903066 ATATTCTGAA
56903076 ACACAAAAATAAC
1 ACACAAAAATAAC
56903089 ACACAAAAATAA
1 ACACAAAAATAA
56903101 TATTATAGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.20, G:0.00, T:0.08
Consensus pattern (13 bp):
ACACAAAAATAAC
Found at i:56905789 original size:6 final size:6
Alignment explanation
Indices: 56905778--56905806 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
56905768 CATATCATAT
56905778 CATTGA CATTGA CATTGA CATTGA CATTG
1 CATTGA CATTGA CATTGA CATTGA CATTG
56905807 TCACATCAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.34
Consensus pattern (6 bp):
CATTGA
Found at i:56909512 original size:32 final size:33
Alignment explanation
Indices: 56909473--56909573 Score: 123
Period size: 33 Copynumber: 3.1 Consensus size: 33
56909463 GTGGTACAAC
* *
56909473 TTGGAAAGGTTATGTACACTTTGTGTGTA-CAT
1 TTGGAAAGGTTAGGTATACTTTGTGTGTACCAT
* *
56909505 TTGGAAAGGTTAGGTATATTTTGTGTATACCAT
1 TTGGAAAGGTTAGGTATACTTTGTGTGTACCAT
* * **
56909538 ATGAAAAGGAAAGGTATACTTTGTGTGTACCAT
1 TTGGAAAGGTTAGGTATACTTTGTGTGTACCAT
56909571 TTG
1 TTG
56909574 AAAACGAATG
Statistics
Matches: 57, Mismatches: 11, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
32 25 0.44
33 32 0.56
ACGTcount: A:0.29, C:0.08, G:0.25, T:0.39
Consensus pattern (33 bp):
TTGGAAAGGTTAGGTATACTTTGTGTGTACCAT
Found at i:56917050 original size:33 final size:32
Alignment explanation
Indices: 56917013--56917124 Score: 100
Period size: 33 Copynumber: 3.4 Consensus size: 32
56917003 TACCCAAGTG
*
56917013 GTACAACTTGAAAAGGTTATGTACACTTTGTGT
1 GTAC-ACTTGAAAAGGTTAGGTACACTTTGTGT
* *
56917046 GTACACTTGGAAAGGTTAGGTATACTTTGTGT
1 GTACACTTGAAAAGGTTAGGTACACTTTGTGT
* * ** * *
56917078 ATAC-CGTATGAAAAAGAAAGGTATACTTTGTAT
1 GTACAC-T-TGAAAAGGTTAGGTACACTTTGTGT
56917111 GTACCACTTGAAAA
1 GTA-CACTTGAAAA
56917125 TGAATGTACA
Statistics
Matches: 65, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
31 1 0.02
32 29 0.45
33 32 0.49
34 2 0.03
35 1 0.02
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (32 bp):
GTACACTTGAAAAGGTTAGGTACACTTTGTGT
Found at i:56917060 original size:32 final size:33
Alignment explanation
Indices: 56917013--56917077 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 33
56917003 TACCCAAGTG
*
56917013 GTACAACTTGAAAAGGTTATGTACACTTTGTGT
1 GTACAACTTGAAAAGGTTAGGTACACTTTGTGT
* *
56917046 GTAC-ACTTGGAAAGGTTAGGTATACTTTGTGT
1 GTACAACTTGAAAAGGTTAGGTACACTTTGTGT
56917078 ATACCGTATG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 25 0.86
33 4 0.14
ACGTcount: A:0.28, C:0.11, G:0.25, T:0.37
Consensus pattern (33 bp):
GTACAACTTGAAAAGGTTAGGTACACTTTGTGT
Found at i:56923086 original size:47 final size:48
Alignment explanation
Indices: 56922982--56923204 Score: 171
Period size: 47 Copynumber: 4.8 Consensus size: 48
56922972 GGTAAGGTGT
* * * *
56922982 CGATGCCATGTCCCAGAAATGGTCTTACATTGGATCAT-ATCTCAAGT--
1 CGATGCCATGTCCCAGACAGGGTCTTACACTGGCTC-TCATCTC-AGTGC
* * * *
56923029 CTATGCCATGTCCCAGACAGGGTCTTACACTGGCTATCATCT-TGTAGT
1 CGATGCCATGTCCCAGACAGGGTCTTACACTGGCTCTCATCTCAGT-GC
* * * *
56923077 TGATG-CATGTCCCAGACA-TGTCTTACACTAGCTCTCGTCTCAGTGC
1 CGATGCCATGTCCCAGACAGGGTCTTACACTGGCTCTCATCTCAGTGC
*
56923123 CGATGCCATGTCCCAGAC-GTGGTCTTACACTGGCTCTCATAATGC-G-GC
1 CGATGCCATGTCCCAGACAG-GGTCTTACACTGGCTCTCAT-CT-CAGTGC
* * *
56923171 CGATG-CATGTCCCAAACA-TGTCTTACACTAGCTC
1 CGATGCCATGTCCCAGACAGGGTCTTACACTGGCTC
56923205 ACACACAAAT
Statistics
Matches: 142, Mismatches: 23, Indels: 23
0.76 0.12 0.12
Matches are distributed among these distances:
45 2 0.01
46 38 0.27
47 72 0.51
48 27 0.19
49 2 0.01
50 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACAGGGTCTTACACTGGCTCTCATCTCAGTGC
Found at i:56923149 original size:94 final size:94
Alignment explanation
Indices: 56923031--56923204 Score: 260
Period size: 94 Copynumber: 1.9 Consensus size: 94
56923021 TCTCAAGTCT
** * ** *
56923031 ATGCCATGTCCCAGACAGGGTCTTACACTGGCTATCATCTTGTAGTTGATGCATGTCCCAGACAT
1 ATGCCATGTCCCAGACAGGGTCTTACACTGGCTATCATAATGCAGCCGATGCATGTCCCAAACAT
56923096 GTCTTACACTAGCTCTCGTCTCAGTGCCG
66 GTCTTACACTAGCTCTCGTCTCAGTGCCG
* *
56923125 ATGCCATGTCCCAGAC-GTGGTCTTACACTGGCTCTCATAATGCGGCCGATGCATGTCCCAAACA
1 ATGCCATGTCCCAGACAG-GGTCTTACACTGGCTATCATAATGCAGCCGATGCATGTCCCAAACA
56923189 TGTCTTACACTAGCTC
65 TGTCTTACACTAGCTC
56923205 ACACACAAAT
Statistics
Matches: 71, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
93 1 0.01
94 70 0.99
ACGTcount: A:0.21, C:0.30, G:0.21, T:0.28
Consensus pattern (94 bp):
ATGCCATGTCCCAGACAGGGTCTTACACTGGCTATCATAATGCAGCCGATGCATGTCCCAAACAT
GTCTTACACTAGCTCTCGTCTCAGTGCCG
Found at i:56930669 original size:46 final size:46
Alignment explanation
Indices: 56930619--56930791 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
56930609 TCTTGTAGCT
*
56930619 GATGCATGTTCCAGACATGTCTTACACTGGCT-TACGTCTCGTGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCT-CGTCTCGTGGCC
* * *
56930665 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAAT-ACC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCTCGTCTC-GTGGCC
* * * * *
56930711 GATGCCATGTCCTAGACATGGTCTTACACGGGCTCTCATAAT-GTGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCGT-CTCGTGGCC
*
56930759 GATGCATGTCCCAGACATGTCTTACACTAGCTC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTC
56930792 ACACACAAAT
Statistics
Matches: 106, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
46 55 0.52
47 29 0.27
48 21 0.20
49 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.21, T:0.29
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCTCGTCTCGTGGCC
Found at i:56934583 original size:42 final size:42
Alignment explanation
Indices: 56934535--56934647 Score: 127
Period size: 43 Copynumber: 2.7 Consensus size: 42
56934525 AGTACAATAC
** **
56934535 CAATGCCATATCCCAGATATGGTCTTACATGGGATCTTAAAT
1 CAATGCCATATCCCAGATATGGTCTTACATGAAATCCCAAAT
* * *
56934577 CAATGCCAATAGCCCAGCTATGGTCTTACATGAAATCCCATAT
1 CAATGCC-ATATCCCAGATATGGTCTTACATGAAATCCCAAAT
** *
56934620 TGATGCCATATCCCAGATATAGTCTTAC
1 CAATGCCATATCCCAGATATGGTCTTAC
56934648 TCCTAAACTC
Statistics
Matches: 58, Mismatches: 12, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
42 25 0.43
43 33 0.57
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (42 bp):
CAATGCCATATCCCAGATATGGTCTTACATGAAATCCCAAAT
Found at i:56950038 original size:28 final size:28
Alignment explanation
Indices: 56949972--56950206 Score: 375
Period size: 28 Copynumber: 8.4 Consensus size: 28
56949962 GAGATTGGCG
* * *
56949972 CTAAGTGTGCGGGTTTAAAT-TGTACGGCA
1 CTAAGTGTGCGAGTTTGATTATGTA--GCA
56950001 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
56950029 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
56950057 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
56950085 CTAAGTGTGCGAGTTTGATTACGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
56950113 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
56950141 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
56950169 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
56950196 CTGAGTGTGCG
1 CTAAGTGTGCG
56950207 GACTTAATAT
Statistics
Matches: 198, Mismatches: 7, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
27 24 0.12
28 153 0.77
29 17 0.09
30 4 0.02
ACGTcount: A:0.25, C:0.12, G:0.29, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATGTAGCA
Found at i:56952631 original size:20 final size:18
Alignment explanation
Indices: 56952597--56952634 Score: 58
Period size: 20 Copynumber: 2.0 Consensus size: 18
56952587 GAAAAAAAAT
56952597 GGAGAGAAAAATGAGAGA
1 GGAGAGAAAAATGAGAGA
56952615 GGAGAAGAAAGAATGAGAGA
1 GGAG-AGAAA-AATGAGAGA
56952635 ATGTTGTGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.22
19 5 0.28
20 9 0.50
ACGTcount: A:0.55, C:0.00, G:0.39, T:0.05
Consensus pattern (18 bp):
GGAGAGAAAAATGAGAGA
Found at i:56955200 original size:42 final size:44
Alignment explanation
Indices: 56955100--56955213 Score: 128
Period size: 43 Copynumber: 2.7 Consensus size: 44
56955090 CAATGCCAAC
* * *
56955100 ATCCCAGAC-GTGGTCTTACATGT-AACCAAATATCGATGACACT
1 ATCCCAGACAG-GGTCTTACACGTAAATCAAATATCGATGACAAT
* *
56955143 ATCCCAGACAGGGTCTTCCAC-TAAATCAAATAT-GATGTCAAT
1 ATCCCAGACAGGGTCTTACACGTAAATCAAATATCGATGACAAT
* *
56955185 GTCCCAGACATGGTCTTACACGTAAATCA
1 ATCCCAGACAGGGTCTTACACGTAAATCA
56955214 TAAGTCGATG
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
42 26 0.43
43 33 0.55
44 1 0.02
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.25
Consensus pattern (44 bp):
ATCCCAGACAGGGTCTTACACGTAAATCAAATATCGATGACAAT
Found at i:56974666 original size:11 final size:11
Alignment explanation
Indices: 56974633--56974667 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
56974623 GTACATATGC
*
56974633 TCTTTTTTTGT
1 TCTTTTTTTTT
*
56974644 TCTTTTTCTTT
1 TCTTTTTTTTT
56974655 TCTTTTTTTTT
1 TCTTTTTTTTT
56974666 TC
1 TC
56974668 ATGAGCATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.00, C:0.14, G:0.03, T:0.83
Consensus pattern (11 bp):
TCTTTTTTTTT
Found at i:56975942 original size:3 final size:3
Alignment explanation
Indices: 56975934--56975980 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
56975924 CTCTATGGGA
56975934 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
56975981 AGGATCCTTG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:56979308 original size:27 final size:26
Alignment explanation
Indices: 56979254--56979666 Score: 152
Period size: 27 Copynumber: 15.7 Consensus size: 26
56979244 TTAGTTTACC
* *
56979254 AAATTACTAAATACCCTCGACTTGTA
1 AAATTACCAAATACCCTCGATTTGTA
* *
56979280 AAATTACCAAAGTACCCCCGATTTATA
1 AAATTACCAAA-TACCCTCGATTTGTA
*
56979307 AAATTACCTAAATATCCTCGATTTGTA
1 AAATTACC-AAATACCCTCGATTTGTA
* *
56979334 AAATTACTGAAATA----AGA----TA
1 AAATTAC-CAAATACCCTCGATTTGTA
* ** **
56979353 GAATTACCATTTTACCCTCGATTTACA
1 AAATTACCA-AATACCCTCGATTTGTA
* ** * **
56979380 GAATTACCATTTTACCCTCAATTTACA
1 AAATTACCA-AATACCCTCGATTTGTA
* * * **
56979407 AAATTACTGAAATACCCTTGGTTTACA
1 AAATTAC-CAAATACCCTCGATTTGTA
* ***
56979434 AAATTACCCTAATACCCTCGATCAATA
1 AAATTA-CCAAATACCCTCGATTTGTA
*
56979461 AAATTACCAAAATACCC-CTAGTTTGT-
1 AAATTACC-AAATACCCTCGA-TTTGTA
* * **
56979487 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACC-AAATACCCTCGATTTGTA
*
56979514 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACC-AAATACCCTC-GATTTGTA
* * * *
56979541 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTAC-CAAATACCCTCGATTTGTA
* * *
56979568 AAATCACCAAAATACCC-CTAGTTTCTA
1 AAATTACC-AAATACCCTCGA-TTTGTA
*
56979595 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACC-AAATACCCTCGA-TTTGTA
* *
56979622 AAATTATCGAAATACCC-CTGATTTGTG
1 AAATTA-CCAAATACCCTC-GATTTGTA
*
56979649 AAATTATCGAAATACCCT
1 AAATTA-CCAAATACCCT
56979667 TGTAGGGTAG
Statistics
Matches: 304, Mismatches: 57, Indels: 50
0.74 0.14 0.12
Matches are distributed among these distances:
18 1 0.00
19 10 0.03
23 4 0.01
26 34 0.11
27 248 0.82
28 7 0.02
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.31
Consensus pattern (26 bp):
AAATTACCAAATACCCTCGATTTGTA
Found at i:56979450 original size:54 final size:54
Alignment explanation
Indices: 56979374--56979611 Score: 210
Period size: 54 Copynumber: 4.4 Consensus size: 54
56979364 TTACCCTCGA
* ** * ** *
56979374 TTTACAGAATTACCATTTTACCCTCAATTTACAAAATTACTGAAATACCCTTGG
1 TTTACAAAATTACCATAATACCCTCGATTTACAAAATTACCAAAATACCCCTGG
* ** * *
56979428 TTTACAAAATTACCCTAATACCCTCGATCAATAAAATTACCAAAATACCCCTAG
1 TTTACAAAATTACCATAATACCCTCGATTTACAAAATTACCAAAATACCCCTGG
** * * *
56979482 TTT-GTAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGG
1 TTTACAAAATTACCATAATACCCTCGATTTACAAAATTACCAAAATACCCCTGG
** * * * * * * *
56979535 TTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTAG
1 TTTACAAAATTACCATAATACCCTCGATTTACAAAATTACCAAAATACCCCTGG
*
56979589 TTT-CTAAAATTACCAAAATACCC
1 TTTAC-AAAATTACCATAATACCC
56979612 CTAGTTTGTA
Statistics
Matches: 152, Mismatches: 30, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
53 43 0.28
54 109 0.72
ACGTcount: A:0.39, C:0.24, G:0.06, T:0.31
Consensus pattern (54 bp):
TTTACAAAATTACCATAATACCCTCGATTTACAAAATTACCAAAATACCCCTGG
Found at i:56979517 original size:107 final size:108
Alignment explanation
Indices: 56979401--56979641 Score: 297
Period size: 107 Copynumber: 2.2 Consensus size: 108
56979391 TTACCCTCAA
* ** *
56979401 TTTACAAAATTACTGAAATACCCTTGGTTTACAAAATTACCCTAATACCCTCGATCAATAAAATT
1 TTTACAAAATTACTGAAATACCCCTGGTTTACAAAATTACCAAAATACCCTCGATCAATAAAATC
* * *
56979466 ACCAAAATACCCCTAGTTTGT-AAATTACCAAAATACCCTTGG
66 ACCAAAATACCCCTAGTTTCTAAAATTACCAAAATACCCCTAG
** ** * * * **
56979508 TTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATC
1 TTTACAAAATTACTGAAATACCCCTGGTTTACAAAATTACCAAAATACCCTCGATCAATAAAATC
56979573 ACCAAAATACCCCTAGTTTCTAAAATTACCAAAATACCCCTAG
66 ACCAAAATACCCCTAGTTTCTAAAATTACCAAAATACCCCTAG
**
56979616 TTTGTAAAATTA-TCGAAATACCCCTG
1 TTTACAAAATTACT-GAAATACCCCTG
56979642 ATTTGTGAAA
Statistics
Matches: 112, Mismatches: 20, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
107 72 0.64
108 40 0.36
ACGTcount: A:0.39, C:0.23, G:0.07, T:0.30
Consensus pattern (108 bp):
TTTACAAAATTACTGAAATACCCCTGGTTTACAAAATTACCAAAATACCCTCGATCAATAAAATC
ACCAAAATACCCCTAGTTTCTAAAATTACCAAAATACCCCTAG
Found at i:56979624 original size:54 final size:54
Alignment explanation
Indices: 56979458--56979668 Score: 282
Period size: 54 Copynumber: 3.9 Consensus size: 54
56979448 CCCTCGATCA
56979458 ATAAAATTACCAAAATACCCCTAGTTTGT-AAATTACCAAAATACCCTTGGTTT
1 ATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTT
* * *
56979511 ACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTT
1 ATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTT
* * * *
56979565 ATAAAATCACCAAAATACCCCTAGTTTCTAAAATTACCAAAATACCCCTAGTTT
1 ATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTT
* * * * * *
56979619 GTAAAATTATCGAAATACCCCT-GATTTGTGAAATTATCGAAATACCCTTG
1 ATAAAATTACCAAAATACCCCTAG-TTTGTAAAATTACCAAAATACCCTTG
56979669 TAGGGTAGAA
Statistics
Matches: 136, Mismatches: 20, Indels: 3
0.86 0.13 0.02
Matches are distributed among these distances:
53 28 0.21
54 108 0.79
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (54 bp):
ATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTT
Found at i:56979680 original size:27 final size:27
Alignment explanation
Indices: 56979650--56979979 Score: 423
Period size: 27 Copynumber: 12.3 Consensus size: 27
56979640 TGATTTGTGA
* *
56979650 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* **
56979677 AATTATCGAAATACCCCTG-ATTTGTAG
1 AATTACCGAAATACCCCTGTA-GGGTAG
*
56979704 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
56979731 AATTACCGAAATACCCTTGTAGAGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
56979758 AATTATC-ACAATACCCCTGTATGGTAA
1 AATTACCGA-AATACCCCTGTAGGGTAG
56979785 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
56979812 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
56979839 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
56979866 AATTATCGCAATACCCTTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
56979893 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
56979920 AATTACCGAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
56979947 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
56979973 AATTACC
1 AATTACC
56979980 ATTTTTCCCC
Statistics
Matches: 263, Mismatches: 36, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
26 18 0.07
27 243 0.92
28 2 0.01
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:56979681 original size:81 final size:78
Alignment explanation
Indices: 56979459--56979939 Score: 357
Period size: 81 Copynumber: 6.0 Consensus size: 78
56979449 CCTCGATCAA
* * * ** *
56979459 TAAAATTACCAAAATACCCCTAGTTTGT-AAATTACCAAAATACCCTTG--GTTTACAAAATTAC
1 TAAAATTA-CGAAATACCCCT-GTTAGTGAAATTACCGAAATACCCTTGTAGGGT--AGAATTAC
56979521 CAAAATACCCCTGGTTTG
62 CAAAATACCCCT-GTTTG
* * * * * * *** *
56979539 TAAAATTACTAAAATACCCTTGGTTTA-TAAAATCACCAAAATACCCCTAGT-TTCTAAAATTAC
1 TAAAATTAC-GAAATACCCCT-G-TTAGTGAAATTACCGAAATA-CCCTTGTAGGGTAGAATTAC
56979602 CAAAATACCCCTAGTTTG
62 CAAAATACCCCT-GTTTG
* * * *
56979620 TAAAATTATCGAAATACCCCTGATTTGTGAAATTATCGAAATACCCTTGTAGGGTAGAATTATCG
1 TAAAATTA-CGAAATACCCCTG-TTAGTGAAATTACCGAAATACCCTTGTAGGGTAGAATTACCA
56979685 AAATACCCCTGATTTG
64 AAATACCCCTG-TTTG
* * * *
56979701 TAGAATTACTGAAATACCCCTG-TAGGGTAGAATTACCGAAATACCCTTGTAGAGTAGAATTATC
1 TAAAATTAC-GAAATACCCCTGTTAGTG-A-AATTACCGAAATACCCTTGTAGGGTAGAATTACC
* *
56979765 ACAATACCCCTGTATGG
63 AAAATACCCCTGT-TTG
* * *
56979782 TAAAATTACCGAAATACCCCTG-TAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACC
1 TAAAATTA-CGAAATACCCCTGTTAGTG-A-AATTACCGAAATACCCTTGTAGGGTAGAATTACC
**
56979846 AAAATACCCCTGTAGGG
63 AAAATACCCCTGT-TTG
* * * * *
56979863 TAGAATTATCGCAATACCCTTG-TAGGGTAAAATTACCGAAATACCCCTGTAGGGTAGAATTACC
1 TAAAATTA-CGAAATACCCCTGTTA--GTGAAATTACCGAAATACCCTTGTAGGGTAGAATTACC
*
56979927 GAAATACCCCTGT
63 AAAATACCCCTGT
56979940 AGGGTGGAAT
Statistics
Matches: 339, Mismatches: 46, Indels: 31
0.81 0.11 0.07
Matches are distributed among these distances:
79 4 0.01
80 33 0.10
81 291 0.86
82 8 0.02
83 3 0.01
ACGTcount: A:0.37, C:0.21, G:0.14, T:0.28
Consensus pattern (78 bp):
TAAAATTACGAAATACCCCTGTTAGTGAAATTACCGAAATACCCTTGTAGGGTAGAATTACCAAA
ATACCCCTGTTTG
Found at i:56979940 original size:81 final size:81
Alignment explanation
Indices: 56979596--56979979 Score: 427
Period size: 81 Copynumber: 4.8 Consensus size: 81
56979586 TAGTTTCTAA
* ** * * ** * *
56979596 AATTACCAAAATACCCCTAGT-TTGTAAAATTATCGAAATACCCCTG-ATTTGTGAAATTATCGA
1 AATTACCGAAATACCCCT-GTAGGGTAGAATTACCGAAATACCCCTGTA-GGGTAAAATTACCGA
*
56979659 AATACCCTTGTAGGGTAG
64 AATACCCCTGTAGGGTAG
* ** * *
56979677 AATTATCGAAATACCCCTG-ATTTGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAA
1 AATTACCGAAATACCCCTGTA-GGGTAGAATTACCGAAATACCCCTGTAGGGTAAAATTACCGAA
* *
56979741 ATACCCTTGTAGAGTAG
65 ATACCCCTGTAGGGTAG
* * * *
56979758 AATTATC-ACAATACCCCTGTATGGTAAAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAA
1 AATTACCGA-AATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAAAATTACCGAA
*
56979822 ATACCCCTATAGGGTAG
65 ATACCCCTGTAGGGTAG
* * * *
56979839 AATTACCAAAATACCCCTGTAGGGTAGAATTATCGCAATACCCTTGTAGGGTAAAATTACCGAAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAAAATTACCGAAA
56979904 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
* * * *
56979920 AATTACCGAAATACCCCTGTAGGGTGGAATTACCGAGATA-CCTTGTGGGGTAAAATTACC
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAAAATTACC
56979980 ATTTTTCCCC
Statistics
Matches: 266, Mismatches: 31, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
80 21 0.08
81 242 0.91
82 3 0.01
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (81 bp):
AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAAAATTACCGAAA
TACCCCTGTAGGGTAG
Found at i:56980458 original size:22 final size:22
Alignment explanation
Indices: 56980406--56980470 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 22
56980396 TTAAAGCCTT
* * *
56980406 CTGATTATGGCTTTGCGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
56980428 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
* *
56980450 CTGATTATGGTTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
56980471 ACGTATTTGC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:56980659 original size:27 final size:27
Alignment explanation
Indices: 56980629--56980730 Score: 116
Period size: 27 Copynumber: 3.8 Consensus size: 27
56980619 ATTCTATTAT
* *
56980629 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
56980656 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTATGCCAC-AATATCTGTTTCTG
* *
56980683 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
* * * *
56980710 GTGACTCTGTCATAATATCTG
1 GTGGCTATGCCACAATATCTG
56980731 ATAACTGAGC
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.12
27 51 0.77
28 7 0.11
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.37
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTGTTTCTG
Found at i:56980910 original size:31 final size:31
Alignment explanation
Indices: 56980866--56980976 Score: 123
Period size: 31 Copynumber: 3.5 Consensus size: 31
56980856 TTGCATTCAC
56980866 ATTCTGATTTTTGATTCTGTTACCTCATACTG
1 ATTCTGA-TTTTGATTCTGTTACCTCATACTG
* *
56980898 ATTCTGGTTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTCATACTG
* * * * ** *
56980929 ATTTTGATTCTGATTCTGTCACCTAATTTTC
1 ATTCTGATTTTGATTCTGTTACCTCATACTG
*
56980960 ATTCTGATTCTGATTCT
1 ATTCTGATTTTGATTCT
56980977 AGTTCTGATA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
31 62 0.91
32 6 0.09
ACGTcount: A:0.18, C:0.18, G:0.14, T:0.50
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTCATACTG
Found at i:56982960 original size:27 final size:27
Alignment explanation
Indices: 56982929--56983319 Score: 133
Period size: 27 Copynumber: 14.7 Consensus size: 27
56982919 TTAGTTTACC
* *
56982929 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACTCAAATACCCTCGATTTGTA
*
56982956 AAATTAC-CAAAGTACCC-CTGATTTATA
1 AAATTACTCAAA-TACCCTC-GATTTGTA
* *
56982983 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACTCAAATACCCTCGATTTGTA
* *
56983010 AAATTACTGAAATA----AGA----TA
1 AAATTACTCAAATACCCTCGATTTGTA
* ** * **
56983029 GAATTAC-CATTTTACCCTTGATTTACA
1 AAATTACTCA-AATACCCTCGATTTGTA
* * * **
56983056 AAATTACTGAAATACCCTTGGTTTACA
1 AAATTACTCAAATACCCTCGATTTGTA
* ***
56983083 AAATTACCCAAATACCCTCGATCAATA
1 AAATTACTCAAATACCCTCGATTTGTA
*
56983110 AAATTAC-CAAAATACCC-CTGGTTTGTA
1 AAATTACTC-AAATACCCTC-GATTTGTA
* * * **
56983137 AGATTAC-CAAAATACCCTTGGTTTACAAA
1 AAATTACTC-AAATACCCTCGATTT--GTA
*
56983166 AAATTAC-CAAAATACCC-CTGGTTTGTA
1 AAATTACTC-AAATACCCTC-GATTTGTA
* * * *
56983193 AAATTACTAAAATACCCTTTGGTTTATA
1 AAATTACTCAAATACCC-TCGATTTGTA
*
56983221 AAATTAC-CAAAATACCC-CTAGTTTGTA
1 AAATTACTC-AAATACCCTCGA-TTTGTA
** *
56983248 AAATTACAAAAATATCCCTAG-TTTGTA
1 AAATTACTCAAATA-CCCTCGATTTGTA
*
56983275 AAATTA-TCGAAATACCC-CTGATTTGTG
1 AAATTACTC-AAATACCCTC-GATTTGTA
56983302 AAATTA-TCGAAATACCCT
1 AAATTACTC-AAATACCCT
56983320 GTAGGGTAGA
Statistics
Matches: 279, Mismatches: 53, Indels: 63
0.71 0.13 0.16
Matches are distributed among these distances:
18 1 0.00
19 10 0.04
23 4 0.01
26 10 0.04
27 201 0.72
28 31 0.11
29 22 0.08
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACTCAAATACCCTCGATTTGTA
Found at i:56983011 original size:54 final size:53
Alignment explanation
Indices: 56982929--56983319 Score: 244
Period size: 54 Copynumber: 7.3 Consensus size: 53
56982919 TTAGTTTACC
** * * *
56982929 AAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCTGATTTATA
1 AAATTACCAAAATACCCTCGATTTATAAAATTACCAAA-TACCCCTGATTTGTA
* * * * *
56982983 AAATTACCCAAATATCCTCGATTTGTAAAATTACTGAAATA----AGA----TA
1 AAATTACCAAAATACCCTCGATTTATAAAATTAC-CAAATACCCCTGATTTGTA
* *** * * * * * **
56983029 GAATTACCATTTTACCCTTGATTTACAAAATTACTGAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTCGATTTATAAAATTAC-CAAATACCCCTGATTTGTA
* ** *
56983083 AAATTACCCAAATACCCTCGATCAATAAAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTCGATTTATAAAATTACC-AAATACCCCTGATTTGTA
* * * * *
56983137 AGATTACCAAAATACCCTTGGTTTACAAAAAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTCGATTT--ATAAAATTACC-AAATACCCCTGATTTGTA
* * *
56983193 AAATTACTAAAATACCCTTTGGTTTATAAAATTACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCC-TCGATTTATAAAATTACC-AAATACCCCTGA-TTTGTA
* * * * *
56983248 AAATTACAAAAATATCCCTAG-TTTGTAAAATTATCGAAATACCCCTGATTTGTG
1 AAATTACCAAAATA-CCCTCGATTTATAAAATTA-CCAAATACCCCTGATTTGTA
* *
56983302 AAATTATCGAAATACCCT
1 AAATTACCAAAATACCCT
56983320 GTAGGGTAGA
Statistics
Matches: 270, Mismatches: 50, Indels: 35
0.76 0.14 0.10
Matches are distributed among these distances:
46 34 0.13
50 3 0.01
53 4 0.01
54 128 0.47
55 47 0.17
56 47 0.17
57 7 0.03
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (53 bp):
AAATTACCAAAATACCCTCGATTTATAAAATTACCAAATACCCCTGATTTGTA
Found at i:56983249 original size:55 final size:54
Alignment explanation
Indices: 56983041--56983307 Score: 275
Period size: 54 Copynumber: 4.9 Consensus size: 54
56983031 ATTACCATTT
* * ** * ** **
56983041 TACCCTTGATTTACAAAATTACTGAAATACCCTTGGTTTACAAAATTACCCAAA
1 TACCCTTGGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACAAAAA
* * ** * *
56983095 TACCCTCGATCAATAAAATTACCAAAATACCCCTGGTTTGTAAGATTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACAAAAA
* *
56983149 TACCCTTGGTTTACAAAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAA
1 TACCCTTGGTTT--ATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACAAAAA
*
56983205 TACCCTTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACAAAAA
1 TACCC-TTGGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACAAAAA
* * * * * *
56983260 TATCCC-TAGTTTGTAAAATTATCGAAATACCCCTGATTTGTGAAATTA
1 TA-CCCTTGGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTA
56983308 TCGAAATACC
Statistics
Matches: 181, Mismatches: 28, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
54 86 0.48
55 41 0.23
56 47 0.26
57 7 0.04
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.31
Consensus pattern (54 bp):
TACCCTTGGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACAAAAA
Found at i:56983357 original size:27 final size:27
Alignment explanation
Indices: 56983303--56983685 Score: 545
Period size: 27 Copynumber: 14.3 Consensus size: 27
56983293 TGATTTGTGA
*
56983303 AATTATCGAAATA-CCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
56983329 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
56983356 AATTACCGGAATACCCTTGTATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
56983383 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
56983410 AATTATCGCAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
*
56983437 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
56983464 AATTACCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
56983491 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
56983518 AATTATCGCAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
56983545 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
56983572 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
56983599 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
56983626 AATTACTAAAATACCCCTGTAGAGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
56983653 AATTACCGAGATA-CCTTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
56983679 AATTACC
1 AATTACC
56983686 ATTTTACCCC
Statistics
Matches: 316, Mismatches: 40, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
26 28 0.09
27 288 0.91
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:56984365 original size:27 final size:27
Alignment explanation
Indices: 56984335--56984436 Score: 116
Period size: 27 Copynumber: 3.8 Consensus size: 27
56984325 ATTCTGTTAT
* *
56984335 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
56984362 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTATGCCAC-AATATCTGTTTCTG
* * *
56984389 GTGGCTCTGCCACAATATCTGTATCTA
1 GTGGCTATGCCACAATATCTGTTTCTG
* * *
56984416 GTGACTCTGTCACAATATCTG
1 GTGGCTATGCCACAATATCTG
56984437 ATAACTGAGC
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.12
27 51 0.77
28 7 0.11
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.36
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTGTTTCTG
Found at i:56984393 original size:54 final size:52
Alignment explanation
Indices: 56984327--56984436 Score: 130
Period size: 54 Copynumber: 2.1 Consensus size: 52
56984317 TGCCACGTAT
* * * * *
56984327 TCTGTTATGTGGCTTTGCCACATTATCTGTTTCTGGTGGCTATGCCACAAATA
1 TCTGTTATGTGGCTCTGCCACAATATCTGTATCTAGTGACTATGCCAC-AATA
* * *
56984380 TCTGTTCTGGTGGCTCTGCCACAATATCTGTATCTAGTGACTCTGTCACAATA
1 TCTGTTAT-GTGGCTCTGCCACAATATCTGTATCTAGTGACTATGCCACAATA
56984433 TCTG
1 TCTG
56984437 ATAACTGAGC
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
53 15 0.31
54 33 0.69
ACGTcount: A:0.19, C:0.23, G:0.20, T:0.38
Consensus pattern (52 bp):
TCTGTTATGTGGCTCTGCCACAATATCTGTATCTAGTGACTATGCCACAATA
Found at i:56984644 original size:31 final size:31
Alignment explanation
Indices: 56984572--56984652 Score: 90
Period size: 31 Copynumber: 2.6 Consensus size: 31
56984562 ATTGCATTCA
* *
56984572 CATTCTGAGTTTTGATTCTGTTACCTGATACT
1 CATTCTGA-TTTTGATTCTGTCACCTAATACT
* * * **
56984604 GATTTTGATTCTGATTCTGTCACCTAATTTT
1 CATTCTGATTTTGATTCTGTCACCTAATACT
56984635 CATTCTGATTTTGATTCT
1 CATTCTGATTTTGATTCT
56984653 AGTTCTGATA
Statistics
Matches: 39, Mismatches: 10, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
31 33 0.85
32 6 0.15
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.51
Consensus pattern (31 bp):
CATTCTGATTTTGATTCTGTCACCTAATACT
Found at i:56989167 original size:28 final size:28
Alignment explanation
Indices: 56989105--56989201 Score: 142
Period size: 28 Copynumber: 3.5 Consensus size: 28
56989095 TATTAAGTCT
*
56989105 GCACACTCAGTGCTATATAATC-AACTC
1 GCACACTTAGTGCTATATAATCAAACTC
56989132 GCACACTTAGTGCTATATAATCAAACTC
1 GCACACTTAGTGCTATATAATCAAACTC
* * *
56989160 GCACACTTAGTGCTGTACAATTTAAACTC
1 GCACACTTAGTGCTATATAA-TCAAACTC
56989189 GCACACTTAGTGC
1 GCACACTTAGTGC
56989202 CAATCTCATG
Statistics
Matches: 64, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
27 21 0.33
28 23 0.36
29 20 0.31
ACGTcount: A:0.32, C:0.27, G:0.13, T:0.28
Consensus pattern (28 bp):
GCACACTTAGTGCTATATAATCAAACTC
Found at i:56997766 original size:6 final size:6
Alignment explanation
Indices: 56997755--56997789 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
56997745 TTAAATTTGG
56997755 ATTAAA ATTAAA ATTAAA ATTAAA ATTAAA ATTAA
1 ATTAAA ATTAAA ATTAAA ATTAAA ATTAAA ATTAA
56997790 TTATATTATG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (6 bp):
ATTAAA
Found at i:56998054 original size:27 final size:27
Alignment explanation
Indices: 56997999--56998054 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
56997989 ATAATTTAAG
*
56997999 TACAATTTAATTATTTTATAATAAGTA
1 TACAATTTAATTATTTTATAAGAAGTA
*
56998026 TACAATTTAATTATTTTATAAGAATTA
1 TACAATTTAATTATTTTATAAGAAGTA
56998053 TA
1 TA
56998055 TATTTTTGGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.48
Consensus pattern (27 bp):
TACAATTTAATTATTTTATAAGAAGTA
Found at i:57005931 original size:19 final size:19
Alignment explanation
Indices: 57005883--57005921 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
57005873 GTGATCCTTG
57005883 TTTCTAAAATTTTCATATT
1 TTTCTAAAATTTTCATATT
57005902 TTTCTAAAATTTTC-TATT
1 TTTCTAAAATTTTCATATT
57005920 TT
1 TT
57005922 GTTTCAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.28, C:0.10, G:0.00, T:0.62
Consensus pattern (19 bp):
TTTCTAAAATTTTCATATT
Found at i:57008368 original size:28 final size:28
Alignment explanation
Indices: 57008336--57008415 Score: 99
Period size: 28 Copynumber: 2.9 Consensus size: 28
57008326 TTCCCATTTT
* **
57008336 TAAGATAGTCTTTGGTGGACATTCCACA
1 TAAGATAGTCTATGGCAGACATTCCACA
*
57008364 TAAGATAGTCTATGGCAGACATTCCACG
1 TAAGATAGTCTATGGCAGACATTCCACA
* *
57008392 TAAGATAGTCCATGGCGGAC-TTCC
1 TAAGATAGTCTATGGCAGACATTCC
57008416 TTTTTTTTAT
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
27 4 0.09
28 42 0.91
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (28 bp):
TAAGATAGTCTATGGCAGACATTCCACA
Found at i:57017507 original size:2 final size:2
Alignment explanation
Indices: 57017502--57017569 Score: 136
Period size: 2 Copynumber: 34.0 Consensus size: 2
57017492 TAAATATATA
57017502 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
57017544 TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG
57017570 GAGTAAACAT
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 66 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:57029817 original size:33 final size:33
Alignment explanation
Indices: 57029777--57029845 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 33
57029767 TAATAATTTT
* **
57029777 TATTTAAATAATTTAATATAATGTTACATAAAA
1 TATTTAAATAATTTAACATAATAATACATAAAA
57029810 TATTTAAATAATTTAACATAATAATACATAAAA
1 TATTTAAATAATTTAACATAATAATACATAAAA
57029843 TAT
1 TAT
57029846 AAATTGATCT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.41
Consensus pattern (33 bp):
TATTTAAATAATTTAACATAATAATACATAAAA
Found at i:57029828 original size:23 final size:24
Alignment explanation
Indices: 57029782--57029835 Score: 67
Period size: 23 Copynumber: 2.2 Consensus size: 24
57029772 ATTTTTATTT
57029782 AAATAATTTAATATAATGTTACATA
1 AAAT-ATTTAATATAATGTTACATA
57029807 AAATATTTAA-ATAAT-TTAACATA
1 AAATATTTAATATAATGTT-ACATA
57029830 ATAATA
1 A-AATA
57029836 CATAAAATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
22 2 0.07
23 11 0.41
24 10 0.37
25 4 0.15
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.39
Consensus pattern (24 bp):
AAATATTTAATATAATGTTACATA
Found at i:57034901 original size:19 final size:19
Alignment explanation
Indices: 57034851--57034901 Score: 50
Period size: 19 Copynumber: 2.6 Consensus size: 19
57034841 TAAAAATAAA
*
57034851 ATACATGTGTATTGAATATT
1 ATACATGTAT-TTGAATATT
**
57034871 ATACATACATTTGTAATA-T
1 ATACATGTATTTG-AATATT
57034890 ATACATGTATTT
1 ATACATGTATTT
57034902 ACTTATAATT
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
19 14 0.56
20 11 0.44
ACGTcount: A:0.37, C:0.08, G:0.10, T:0.45
Consensus pattern (19 bp):
ATACATGTATTTGAATATT
Found at i:57034942 original size:5 final size:5
Alignment explanation
Indices: 57034934--57035025 Score: 184
Period size: 5 Copynumber: 18.4 Consensus size: 5
57034924 ATTATTAAGT
57034934 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
57034984 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TA
57035026 GCATAAATTA
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 87 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TAATA
Done.