Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 181 of 356
Found at i:58741681 original size:49 final size:49
Alignment explanation
Indices: 58741624--58741899 Score: 304
Period size: 49 Copynumber: 5.6 Consensus size: 49
58741614 ATACGCATAA
*
58741624 TAGCCTGCACTTAGTACTACACATGTGACCAACAATCCAGTACACGTAG
1 TAGCCTGCACTTAGTACTACACACGTGACCAACAATCCAGTACACGTAG
* *
58741673 TAGCCTGCACTTAGTACTACACACGTGACCAACAATCCAATACACATAG
1 TAGCCTGCACTTAGTACTACACACGTGACCAACAATCCAGTACACGTAG
* * * *
58741722 TAGCCTGCACTTAGTACTACCCACGTGACCTCACCAT-CTGATACACGTAG
1 TAGCCTGCACTTAGTACTACACACGTGACC-AACAATCCAG-TACACGTAG
* ** ** *
58741772 TAGCCTGCACTTAGTACTACACACGTGATCGAAGTC-ATTGAGTAGGCATAG
1 TAGCCTGCACTTAGTACTACACACGTGA-CCAA--CAATCCAGTACACGTAG
* * * * ***
58741823 TAGCCTGCACTTAGTACTACACATGCGACTTAACAGTATGGTACACGTAG
1 TAGCCTGCACTTAGTACTACACACGTGAC-CAACAATCCAGTACACGTAG
58741873 TAGCCTGCACTTAGTACTACACACGTG
1 TAGCCTGCACTTAGTACTACACACGTG
58741900 TATTCACAAT
Statistics
Matches: 190, Mismatches: 29, Indels: 15
0.81 0.12 0.06
Matches are distributed among these distances:
49 77 0.41
50 74 0.39
51 37 0.19
52 2 0.01
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (49 bp):
TAGCCTGCACTTAGTACTACACACGTGACCAACAATCCAGTACACGTAG
Found at i:58741875 original size:101 final size:98
Alignment explanation
Indices: 58741614--58741899 Score: 360
Period size: 101 Copynumber: 2.9 Consensus size: 98
58741604 AAGCTATCTG
* **
58741614 ATACGCATAATAGCCTGCACTTAGTACTACACATGTGAC-CAACAATCCAGTACACGTAGTAGCC
1 ATACGCATAGTAGCCTGCACTTAGTACTACACATGTGACTCAAC-ATCTGGTACACGTAGTAGCC
58741678 TGCACTTAGTACTACACACGTGACCAACAATCCA
65 TGCACTTAGTACTACACACGTGACCAACAATCCA
* * * * *
58741712 ATACACATAGTAGCCTGCACTTAGTACTACCCACGTGACCTCACCATCTGATACACGTAGTAGCC
1 ATACGCATAGTAGCCTGCACTTAGTACTACACATGTGA-CTCAACATCTGGTACACGTAGTAGCC
* **
58741777 TGCACTTAGTACTACACACGTGATCGAAGTC-ATTGA
65 TGCACTTAGTACTACACACGTGA-CCAA--CAATCCA
* * * * *
58741813 GTAGGCATAGTAGCCTGCACTTAGTACTACACATGCGACTTAACAGTATGGTACACGTAGTAGCC
1 ATACGCATAGTAGCCTGCACTTAGTACTACACATGTGACTCAACA-TCTGGTACACGTAGTAGCC
58741878 TGCACTTAGTACTACACACGTG
65 TGCACTTAGTACTACACACGTG
58741900 TATTCACAAT
Statistics
Matches: 161, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
98 34 0.21
99 41 0.25
100 11 0.07
101 74 0.46
102 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (98 bp):
ATACGCATAGTAGCCTGCACTTAGTACTACACATGTGACTCAACATCTGGTACACGTAGTAGCCT
GCACTTAGTACTACACACGTGACCAACAATCCA
Found at i:58749121 original size:28 final size:28
Alignment explanation
Indices: 58749047--58749174 Score: 166
Period size: 28 Copynumber: 4.5 Consensus size: 28
58749037 CATGAGATTG
* * **
58749047 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
* *
58749076 TCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
58749104 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
58749133 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
58749161 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
58749175 GACTTACTAT
Statistics
Matches: 87, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
28 44 0.51
29 43 0.49
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:58758222 original size:43 final size:42
Alignment explanation
Indices: 58758133--58758241 Score: 123
Period size: 43 Copynumber: 2.6 Consensus size: 42
58758123 TAAGATTACG
* *
58758133 TGTAAGACCATA-TCTGGGATATGGCATCGATATGAGACTTCG
1 TGTAAGACCATAGT-TGGGATATGGCATCGATATGAGACTCCA
* * *
58758175 TGTAAGACCATAGTTGGGCTATTGGCGTCGATATGAG-GTCCCA
1 TGTAAGACCATAGTTGGGATA-TGGCATCGATATGAGACT-CCA
*
58758218 TGTAAGACCATAGCTGGGATATGG
1 TGTAAGACCATAGTTGGGATATGG
58758242 AATTGGTATG
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
42 22 0.39
43 35 0.61
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.28
Consensus pattern (42 bp):
TGTAAGACCATAGTTGGGATATGGCATCGATATGAGACTCCA
Found at i:58758355 original size:20 final size:20
Alignment explanation
Indices: 58758327--58758373 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
58758317 TAGCAATGTT
58758327 TAAGTTGTGAAAGACTATGG
1 TAAGTTGTGAAAGACTATGG
* *
58758347 TATGTTGTGAAAGATTATGG
1 TAAGTTGTGAAAGACTATGG
58758367 TAAGTTG
1 TAAGTTG
58758374 CAAGTTGGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.32, C:0.02, G:0.30, T:0.36
Consensus pattern (20 bp):
TAAGTTGTGAAAGACTATGG
Found at i:58759198 original size:13 final size:13
Alignment explanation
Indices: 58759180--58759209 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
58759170 GACACAGCCA
58759180 TGTGTCTCGGCCG
1 TGTGTCTCGGCCG
*
58759193 TGTGTCTGGGCCG
1 TGTGTCTCGGCCG
58759206 TGTG
1 TGTG
58759210 AAGGACACAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.00, C:0.23, G:0.43, T:0.33
Consensus pattern (13 bp):
TGTGTCTCGGCCG
Found at i:58768249 original size:94 final size:94
Alignment explanation
Indices: 58768086--58768458 Score: 674
Period size: 94 Copynumber: 4.0 Consensus size: 94
58768076 AGTCAAGATT
*
58768086 TCTGCACACAAAGTGACATTTAATTCCGCGCACATAGTGCCAATGTTAACTCATTATAATAAGGC
1 TCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAAGGC
*
58768151 AATTTACTTAATTCAAATAGTATATAAAA
66 AATTTACTTAATTCAAATAGCATATAAAA
*
58768180 TTTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAAGGC
1 TCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAAGGC
58768245 AATTTACTTAATTCAAATAGCATATAAAA
66 AATTTACTTAATTCAAATAGCATATAAAA
* *
58768274 TCTGCACACAAAGTGACATTTAATTTCGCACACATAGTGCCAATGTTAACTCATTATAATAAAGC
1 TCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAAGGC
58768339 AATTTACTTAATTCAAATAGCATATAAAA
66 AATTTACTTAATTCAAATAGCATATAAAA
* *
58768368 TCTACACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATATGGC
1 TCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAAGGC
*
58768433 AACTTACTTAATTCAAATAGCATATA
66 AATTTACTTAATTCAAATAGCATATA
58768459 CAGTCACATT
Statistics
Matches: 268, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
94 268 1.00
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (94 bp):
TCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAAGGC
AATTTACTTAATTCAAATAGCATATAAAA
Found at i:58774638 original size:94 final size:94
Alignment explanation
Indices: 58774477--58774755 Score: 513
Period size: 94 Copynumber: 3.0 Consensus size: 94
58774467 AGTCAAGATT
58774477 TCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAAGGC
1 TCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAAGGC
58774542 AATTTACTTAATTCAAATAGCATATAAAA
66 AATTTACTTAATTCAAATAGCATATAAAA
* *
58774571 TCTGCACACAGAGTGACATTTAATTCCGCACACATAGTGACAATGTTAACTCATTATAATAAGGC
1 TCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAAGGC
58774636 AATTTACTTAATTCAAATAGCATATAAAA
66 AATTTACTTAATTCAAATAGCATATAAAA
* *
58774665 TCTGCACACAAAGTGACATTTAATTCCGCACACATTGTGCCAATGTTAACTCATTATAATATGGC
1 TCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAAGGC
*
58774730 AACTTACTTAATTCAAATAGCATATA
66 AATTTACTTAATTCAAATAGCATATA
58774756 TGGTCACATT
Statistics
Matches: 178, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
94 178 1.00
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.30
Consensus pattern (94 bp):
TCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAAGGC
AATTTACTTAATTCAAATAGCATATAAAA
Found at i:58775969 original size:17 final size:17
Alignment explanation
Indices: 58775944--58775978 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
58775934 TTTCTCTCCC
*
58775944 TTTCTTATTAATTCCTT
1 TTTCCTATTAATTCCTT
58775961 TTTCCTATTAATTCCTT
1 TTTCCTATTAATTCCTT
58775978 T
1 T
58775979 CTTTAATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.17, C:0.20, G:0.00, T:0.63
Consensus pattern (17 bp):
TTTCCTATTAATTCCTT
Found at i:58777835 original size:16 final size:16
Alignment explanation
Indices: 58777810--58777853 Score: 61
Period size: 16 Copynumber: 2.7 Consensus size: 16
58777800 TATTTAAGAA
58777810 ATAATAAATAATAAAT
1 ATAATAAATAATAAAT
*
58777826 ATAATTAATAATAAAGT
1 ATAATAAATAATAAA-T
*
58777843 AAAATAAATAA
1 ATAATAAATAA
58777854 CGAATGAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
16 14 0.58
17 10 0.42
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (16 bp):
ATAATAAATAATAAAT
Found at i:58779990 original size:16 final size:16
Alignment explanation
Indices: 58779969--58780004 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
58779959 AAACCCTAAT
58779969 TTTCCCTTTCTT-TTTC
1 TTTCCCTTT-TTCTTTC
58779985 TTTCCCTTTTTCTTTC
1 TTTCCCTTTTTCTTTC
58780001 TTTC
1 TTTC
58780005 TTTCCCTGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 2 0.11
16 17 0.89
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (16 bp):
TTTCCCTTTTTCTTTC
Found at i:58781391 original size:13 final size:14
Alignment explanation
Indices: 58781365--58781397 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
58781355 ATAAAATATA
58781365 AATTTATATTTAAT
1 AATTTATATTTAAT
58781379 AATTTAT-TTTAAT
1 AATTTATATTTAAT
58781392 ATATTT
1 A-ATTT
58781398 CATTAATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (14 bp):
AATTTATATTTAAT
Found at i:58798083 original size:15 final size:15
Alignment explanation
Indices: 58798065--58798129 Score: 71
Period size: 15 Copynumber: 4.4 Consensus size: 15
58798055 TTATCTTGGG
58798065 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
58798080 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
* *
58798095 TTTC-TCAATCTTGGA
1 TTTCTTTATTC-TGGA
*
58798110 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
58798124 TTTCTT
1 TTTCTT
58798130 GTTATCTTTA
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
14 12 0.29
15 25 0.61
16 4 0.10
ACGTcount: A:0.11, C:0.15, G:0.14, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:58798095 original size:30 final size:31
Alignment explanation
Indices: 58798061--58798129 Score: 90
Period size: 30 Copynumber: 2.3 Consensus size: 31
58798051 TATCTTATCT
* *
58798061 TGGGTTTCTTTATTC-TGGATTTCTTTATTC
1 TGGGTTTCTTCAATCTTGGATTTCTTTATTC
58798091 TGGGTTTC-TCAATCTTGGATTTCTTTATTC
1 TGGGTTTCTTCAATCTTGGATTTCTTTATTC
*
58798121 -GGTTTTCTT
1 TGGGTTTCTT
58798130 GTTATCTTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
29 10 0.29
30 24 0.71
ACGTcount: A:0.10, C:0.14, G:0.17, T:0.58
Consensus pattern (31 bp):
TGGGTTTCTTCAATCTTGGATTTCTTTATTC
Found at i:58802511 original size:42 final size:42
Alignment explanation
Indices: 58802464--58802605 Score: 173
Period size: 42 Copynumber: 3.4 Consensus size: 42
58802454 AGGGTTGAAT
*
58802464 AGAAGCTCGTAAGAGCTGAACGAAAACTCATATGAGTTAAAC
1 AGAAGCTCATAAGAGCTGAACGAAAACTCATATGAGTTAAAC
* * * *
58802506 GGAAGCTCATAAGAACTGAA-TAGAAACTCATAAGAGGTT-AAC
1 AGAAGCTCATAAGAGCTGAACGA-AAACTCATATGA-GTTAAAC
* *
58802548 AGAA-CTTAAAAGAGCTGAACGAAAACTCATATGAGTTAAAC
1 AGAAGCTCATAAGAGCTGAACGAAAACTCATATGAGTTAAAC
*
58802589 AGAAGCTCGTAAGAGCT
1 AGAAGCTCATAAGAGCT
58802606 AATATCTCAA
Statistics
Matches: 81, Mismatches: 14, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
40 3 0.04
41 31 0.38
42 44 0.54
43 3 0.04
ACGTcount: A:0.44, C:0.15, G:0.21, T:0.19
Consensus pattern (42 bp):
AGAAGCTCATAAGAGCTGAACGAAAACTCATATGAGTTAAAC
Found at i:58802551 original size:21 final size:21
Alignment explanation
Indices: 58802440--58802603 Score: 61
Period size: 21 Copynumber: 7.9 Consensus size: 21
58802430 ATGAAGGCTA
*
58802440 AACAGAAACCCATAAG-GGTT
1 AACAGAAACTCATAAGAGGTT
* * * * *
58802460 GAATAGAAGCTCGTAAGAGCTG
1 -AACAGAAACTCATAAGAGGTT
*
58802482 AAC-GAAAACTCATATGA-GTT
1 AACAG-AAACTCATAAGAGGTT
* * ** *
58802502 AAACGGAAGCTCATAAGAACTG
1 -AACAGAAACTCATAAGAGGTT
*
58802524 AATAGAAACTCATAAGAGGTT
1 AACAGAAACTCATAAGAGGTT
* * * *
58802545 AACAG-AACTTAAAAGAGCTG
1 AACAGAAACTCATAAGAGGTT
*
58802565 AAC-GAAAACTCATATGA-GTT
1 AACAG-AAACTCATAAGAGGTT
* *
58802585 AAACAGAAGCTCGTAAGAG
1 -AACAGAAACTCATAAGAG
58802604 CTAATATCTC
Statistics
Matches: 98, Mismatches: 35, Indels: 19
0.64 0.23 0.12
Matches are distributed among these distances:
19 1 0.01
20 17 0.17
21 75 0.77
22 5 0.05
ACGTcount: A:0.45, C:0.15, G:0.21, T:0.18
Consensus pattern (21 bp):
AACAGAAACTCATAAGAGGTT
Found at i:58807747 original size:20 final size:22
Alignment explanation
Indices: 58807708--58807747 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
58807698 CCCCTTTTTC
58807708 TTATTCATCTTTTCCTTTACAA
1 TTATTCATCTTTTCCTTTACAA
58807730 TTATTCA-CTTTT-CTTTAC
1 TTATTCATCTTTTCCTTTAC
58807748 TAGAAATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 6 0.33
21 5 0.28
22 7 0.39
ACGTcount: A:0.20, C:0.23, G:0.00, T:0.57
Consensus pattern (22 bp):
TTATTCATCTTTTCCTTTACAA
Found at i:58811747 original size:16 final size:18
Alignment explanation
Indices: 58811716--58811748 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
58811706 GAGAACAGAG
58811716 GGAGAAATAGAAGAAAAC
1 GGAGAAATAGAAGAAAAC
58811734 GGAG-AATA-AAGAAAA
1 GGAGAAATAGAAGAAAA
58811749 AAGAAGTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.64, C:0.03, G:0.27, T:0.06
Consensus pattern (18 bp):
GGAGAAATAGAAGAAAAC
Found at i:58812201 original size:6 final size:6
Alignment explanation
Indices: 58812165--58812322 Score: 58
Period size: 6 Copynumber: 25.8 Consensus size: 6
58812155 CCCTCCCTAT
* *
58812165 CCCTCC CCC-CC CCC-CC CCCCCC CCCT-C CCCTCC CCCTCC CTCTCTCT
1 CCCTCC CCCTCC CCCTCC CCCTCC CCCTCC CCCTCC CCCTCC C-C-CTCC
* * *** * * *
58812212 CTCTCC CCCTTTC TATTTC CCCT-- CCCTCT CCCTCC CTCTCTCC CTCTCC
1 CCCTCC CCC-TCC CCCTCC CCCTCC CCCTCC CCCTCC C-C-CTCC CCCTCC
* * * *
58812261 CTCTCTCC CTCTCTCC CCCTCC CCCTCC CTCTCC CTCTCT CCC-CC CCCTCT
1 C-C-CTCC C-C-CTCC CCCTCC CCCTCC CCCTCC CCCTCC CCCTCC CCCTCC
*
58812312 CCCTCT CCCTC
1 CCCTCC CCCTC
58812323 TGTTAACCCG
Statistics
Matches: 120, Mismatches: 20, Indels: 24
0.73 0.12 0.15
Matches are distributed among these distances:
4 4 0.03
5 19 0.16
6 70 0.58
7 5 0.04
8 22 0.18
ACGTcount: A:0.01, C:0.72, G:0.00, T:0.28
Consensus pattern (6 bp):
CCCTCC
Found at i:58812205 original size:10 final size:10
Alignment explanation
Indices: 58812153--58812322 Score: 77
Period size: 10 Copynumber: 16.7 Consensus size: 10
58812143 CTCTCTCTCT
*
58812153 CTCCCTCCCT
1 CTCCCTCCCC
*
58812163 ATCCCTCCCC
1 CTCCCTCCCC
58812173 C-CCC-CCCC
1 CTCCCTCCCC
58812181 C-CCC-CCCC
1 CTCCCTCCCC
58812189 CTCCCCTCCCC
1 CT-CCCTCCCC
* *
58812200 CTCCCTCTCT
1 CTCCCTCCCC
*
58812210 CTCTCTCCCC
1 CTCCCTCCCC
** *
58812220 CTTTCTATTTCCC
1 C--TC-CCTCCCC
*
58812233 CTCCCTCTCC
1 CTCCCTCCCC
58812243 CTCCCTCTCTCC
1 CTCCCTC-C-CC
58812255 CT--CTCCCTC
1 CTCCCTCCC-C
*
58812264 TCTCCCTCTCTC
1 -CTCCCTC-CCC
58812276 C-CCCTCCCC
1 CTCCCTCCCC
*
58812285 CTCCCTCTCC
1 CTCCCTCCCC
*
58812295 CTCTCTCCCC
1 CTCCCTCCCC
58812305 C-CCCTCTCCC
1 CTCCCTC-CCC
58812315 TCTCCCTC
1 -CTCCCTC
58812323 TGTTAACCCG
Statistics
Matches: 121, Mismatches: 22, Indels: 32
0.69 0.13 0.18
Matches are distributed among these distances:
8 14 0.12
9 12 0.10
10 64 0.53
11 10 0.08
12 15 0.12
13 6 0.05
ACGTcount: A:0.01, C:0.71, G:0.00, T:0.28
Consensus pattern (10 bp):
CTCCCTCCCC
Found at i:58812256 original size:8 final size:8
Alignment explanation
Indices: 58812233--58812303 Score: 74
Period size: 8 Copynumber: 8.6 Consensus size: 8
58812223 TCTATTTCCC
58812233 CTCCCTCT
1 CTCCCTCT
58812241 CCCTCCCTCT
1 --CTCCCTCT
58812251 CT-CC-CT
1 CTCCCTCT
58812257 CTCCCTCT
1 CTCCCTCT
58812265 CTCCCTCT
1 CTCCCTCT
*
58812273 CTCCCCCT
1 CTCCCTCT
*
58812281 CCCCCTCCCT
1 CTCCCT--CT
58812291 CTCCCTCT
1 CTCCCTCT
58812299 CTCCC
1 CTCCC
58812304 CCCCCTCTCC
Statistics
Matches: 53, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
6 4 0.08
7 4 0.08
8 30 0.57
10 15 0.28
ACGTcount: A:0.00, C:0.69, G:0.00, T:0.31
Consensus pattern (8 bp):
CTCCCTCT
Found at i:58812323 original size:6 final size:6
Alignment explanation
Indices: 58812229--58812323 Score: 92
Period size: 6 Copynumber: 16.2 Consensus size: 6
58812219 CCTTTCTATT
58812229 TCCC-C TCCCTC TCCCTC -CCTCTC TCCCTC TCCCTC T--CTC -CCTCTC
1 TCCCTC TCCCTC TCCCTC TCC-CTC TCCCTC TCCCTC TCCCTC TCC-CTC
* * * *
58812274 TCCCCC TCCCCC TCCCTC TCCCTC TCTCCCC CCCCTC TCCCTC TCCCTC
1 TCCCTC TCCCTC TCCCTC TCCCTC TC-CCTC TCCCTC TCCCTC TCCCTC
58812323 T
1 T
58812324 GTTAACCCGT
Statistics
Matches: 76, Mismatches: 6, Indels: 15
0.78 0.06 0.15
Matches are distributed among these distances:
4 3 0.04
5 6 0.08
6 59 0.78
7 8 0.11
ACGTcount: A:0.00, C:0.69, G:0.00, T:0.31
Consensus pattern (6 bp):
TCCCTC
Found at i:58812537 original size:2 final size:2
Alignment explanation
Indices: 58812530--58812710 Score: 128
Period size: 2 Copynumber: 95.0 Consensus size: 2
58812520 TAGCGAGAGG
* * *
58812530 TC TC TC TC TC TC CC TC TC TC TC TC TC CC TC CC TC -C T- TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
* * *
58812570 TC TC TC TC TC TC TC TC TC TC TC TG TC TC TG TC TC TC CC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
* * * * * * *
58812612 -C CC CC TC TC CC TC CC TC -C CC CC TC TC TC -C CC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
* * * * * *
58812651 TC TC -C T- TC TC CC TC -C CC TC -C CC CC TC CC CC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
58812689 TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC
58812711 ATACATAAAA
Statistics
Matches: 145, Mismatches: 25, Indels: 18
0.77 0.13 0.10
Matches are distributed among these distances:
1 9 0.06
2 136 0.94
ACGTcount: A:0.00, C:0.60, G:0.01, T:0.39
Consensus pattern (2 bp):
TC
Found at i:58812621 original size:15 final size:15
Alignment explanation
Indices: 58812601--58812684 Score: 61
Period size: 15 Copynumber: 5.7 Consensus size: 15
58812591 CTGTCTCTGT
58812601 CTCTCCCTCTCCCCC
1 CTCTCCCTCTCCCCC
58812616 CTCTCCCTC-CCTCCC
1 CTCTCCCTCTCC-CCC
* *
58812631 C-C-CTCTCTCCCCT
1 CTCTCCCTCTCCCCC
* *
58812644 CTCTCTCTCTCCTTCTC
1 CTCTCCCTCTCC--CCC
58812661 C-CTCCC-CTCCCCC
1 CTCTCCCTCTCCCCC
*
58812674 CTCCCCCTCTC
1 CTCTCCCTCTC
58812685 TCTCTCTCTC
Statistics
Matches: 54, Mismatches: 7, Indels: 16
0.70 0.09 0.21
Matches are distributed among these distances:
13 10 0.19
14 10 0.19
15 28 0.52
16 4 0.07
17 2 0.04
ACGTcount: A:0.00, C:0.70, G:0.00, T:0.30
Consensus pattern (15 bp):
CTCTCCCTCTCCCCC
Found at i:58812779 original size:2 final size:2
Alignment explanation
Indices: 58812772--58812844 Score: 53
Period size: 2 Copynumber: 38.0 Consensus size: 2
58812762 TAGCGAGAAG
* *
58812772 TC TC TC TC TC AC AC TC -C TC TC TC TC T- TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
* * * * * *
58812812 CC TC CC TC CC TC -C TC CC TC TC TC CC TC GC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
58812845 CTCCTCCCTC
Statistics
Matches: 54, Mismatches: 14, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
1 3 0.06
2 51 0.94
ACGTcount: A:0.03, C:0.58, G:0.01, T:0.38
Consensus pattern (2 bp):
TC
Found at i:58812889 original size:4 final size:4
Alignment explanation
Indices: 58812809--58813093 Score: 165
Period size: 4 Copynumber: 73.8 Consensus size: 4
58812799 CTCTCTCTCT
* *
58812809 CTCC CTCC CTCC CT-C CTCC CTCT CTCC CTCG CTCTC CT-C CTCC CT-C
1 CTCC CTCC CTCC CTCC CTCC CTCC CTCC CTCC CTC-C CTCC CTCC CTCC
* * * * *
58812855 CTAC CTCCC CTCC AT-C CTCC CTCT CTCCC CTCC CTCC TTCC CTCC CCCC
1 CTCC CT-CC CTCC CTCC CTCC CTCC CT-CC CTCC CTCC CTCC CTCC CTCC
* * * *
58812904 CTCC CT-C CTCC CCCC CTCTC CCCC TCTCC CTCC C-CC CTCT CTTC CT-C
1 CTCC CTCC CTCC CTCC CTC-C CTCC -CTCC CTCC CTCC CTCC CTCC CTCC
* * * * *
58812951 C-CC CTCT CTCC CTCC TCTCT CTCT CTCC CTCC CTCC TCTCC CTCT CTCT
1 CTCC CTCC CTCC CTCC -CTCC CTCC CTCC CTCC CTCC -CTCC CTCC CTCC
* * * *
58813000 CTCTC CT-C CT-C CT-C CTCT CTTC CTCT TTCC CT-- CTCC CTCC CT--
1 CTC-C CTCC CTCC CTCC CTCC CTCC CTCC CTCC CTCC CTCC CTCC CTCC
* * *
58813042 CTCC CTCT CT-C CTCC CCCC CT-C CT-C CTCC CTCT CTCC CTCC CTCC
1 CTCC CTCC CTCC CTCC CTCC CTCC CTCC CTCC CTCC CTCC CTCC CTCC
58813087 CTCC CTC
1 CTCC CTC
58813094 TCTTCTCTCT
Statistics
Matches: 218, Mismatches: 40, Indels: 46
0.72 0.13 0.15
Matches are distributed among these distances:
2 4 0.02
3 38 0.17
4 153 0.70
5 23 0.11
ACGTcount: A:0.01, C:0.67, G:0.00, T:0.32
Consensus pattern (4 bp):
CTCC
Found at i:58812959 original size:2 final size:2
Alignment explanation
Indices: 58812954--58813285 Score: 225
Period size: 2 Copynumber: 175.5 Consensus size: 2
58812944 CTTCCTCCCC
* * * *
58812954 CT CT CT CC CT C- CT CT CT CT CT CT CC CT CC CT C- CT CT CC CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* *
58812994 CT CT CT CT CT C- CT C- CT C- CT C- CT CT CT -T C- CT CT TT CC
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* * * * * *
58813030 CT CT CC CT CC CT CT CC CT CT CT C- CT CC CC CC CT C- CT C- CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* * * * *
58813069 CC CT CT CT CC CT CC CT CC CT CC CT CT CT -T CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* *
58813110 CT C- CT CT CT CT CT C- CT C- CT CG CT CC CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* * * *
58813149 CT CT CT CT CT CT CT GT CT CT GT CT CT CT CT CT CT CC CT CT CC
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* * * * * * * *
58813191 CT CC CT CT CC CT CT CT TT CC CT CT CC CT CT CC CT CC CT C- CC
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* * *
58813232 CT CT C- CC CT CT CC CT CT CT CT -T CT CT CT CT CT CC CT CT C-
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
58813271 CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT C
58813286 ATACATAAAA
Statistics
Matches: 249, Mismatches: 62, Indels: 38
0.71 0.18 0.11
Matches are distributed among these distances:
1 19 0.08
2 230 0.92
ACGTcount: A:0.00, C:0.60, G:0.01, T:0.39
Consensus pattern (2 bp):
CT
Found at i:58813369 original size:4 final size:4
Alignment explanation
Indices: 58813345--58813790 Score: 74
Period size: 4 Copynumber: 113.0 Consensus size: 4
58813335 GTGAGAAGTT
58813345 CCTC TCCTC CCT- -CTC CTCTC CCTC CTCTC CCTC CCT- -CTC CCTC CC-C
1 CCTC -CCTC CCTC CCTC C-CTC CCTC C-CTC CCTC CCTC CCTC CCTC CCTC
* * * * * * *
58813391 CC-C CCTC CCCC CCTC CC-C CC-C CCCC CCCC CCCC CCCC CCCC CCCC
1 CCTC CCTC CCTC CCTC CCTC CCTC CCTC CCTC CCTC CCTC CCTC CCTC
* * * * * * * * * * * *
58813436 CCCC CCCC CCCC CCCC CCCC CCCC CCCC CCCC CCCC CCCC CCCC CCCC
1 CCTC CCTC CCTC CCTC CCTC CCTC CCTC CCTC CCTC CCTC CCTC CCTC
* * * * * * * * *
58813484 CCCC CCCC CCCC CCCC CCCC CCCC CCCC CCCC CCCC CCTC TCCTC CC-C
1 CCTC CCTC CCTC CCTC CCTC CCTC CCTC CCTC CCTC CCTC -CCTC CCTC
* * * * * *
58813532 CC-C CC-C CCCC CCCC CCCC CCCC CCCC CCCC CTCTC CCTC TCCTC CC-C
1 CCTC CCTC CCTC CCTC CCTC CCTC CCTC CCTC C-CTC CCTC -CCTC CCTC
* * * * *
58813579 CC-C CCCC CCCC CCCC CCTC CCTC TCT- CCTC TCCTC CCT- -CTC CCCC
1 CCTC CCTC CCTC CCTC CCTC CCTC CCTC CCTC -CCTC CCTC CCTC CCTC
* *
58813624 CCTC CTCTC TCTC CCTC CCT- -CTC CTCTC CCT- CCTC TCTC CTCTC CTCTC
1 CCTC C-CTC CCTC CCTC CCTC CCTC C-CTC CCTC CCTC CCTC C-CTC C-CTC
* * * * *
58813673 TCTC CCTC TCCT- CCTC TCTC TCTC CTCTC TCTC TCTC TCCTC TCCT-
1 CCTC CCTC -CCTC CCTC CCTC CCTC C-CTC CCTC CCTC -CCTC -CCTC
* * * * * *
58813719 CCT- CCT- CCTC TCTC TCCTC TCTC TCTC TCTC CCTC TCTC CCTC TCTC
1 CCTC CCTC CCTC CCTC -CCTC CCTC CCTC CCTC CCTC CCTC CCTC CCTC
* * * *
58813766 CCCC CCCC CCCC CCCC CTCTC CCTC
1 CCTC CCTC CCTC CCTC C-CTC CCTC
58813791 TCCCTCTCCC
Statistics
Matches: 382, Mismatches: 29, Indels: 61
0.81 0.06 0.13
Matches are distributed among these distances:
2 8 0.02
3 44 0.12
4 269 0.70
5 61 0.16
ACGTcount: A:0.00, C:0.79, G:0.00, T:0.21
Consensus pattern (4 bp):
CCTC
Found at i:58813370 original size:23 final size:23
Alignment explanation
Indices: 58813344--58813407 Score: 77
Period size: 23 Copynumber: 3.0 Consensus size: 23
58813334 AGTGAGAAGT
58813344 TCCTCT-CCTCCCTCTCCTCTCCC
1 TCCTCTCCCTCCCTCTCC-CTCCC
58813367 TCCTCTCCCTCCCTCTCCCTCCC
1 TCCTCTCCCTCCCTCTCCCTCCC
58813390 -CC-C-CCCTCCC-C-CCCTCCC
1 TCCTCTCCCTCCCTCTCCCTCCC
58813408 CCCCCCCCCC
Statistics
Matches: 40, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
18 7 0.17
19 1 0.03
20 7 0.17
21 1 0.03
22 2 0.05
23 11 0.28
24 11 0.28
ACGTcount: A:0.00, C:0.73, G:0.00, T:0.27
Consensus pattern (23 bp):
TCCTCTCCCTCCCTCTCCCTCCC
Found at i:58813383 original size:19 final size:20
Alignment explanation
Indices: 58813351--58813388 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
58813341 AGTTCCTCTC
58813351 CTCCCTCTCCTCTCCCTCCT
1 CTCCCTCTCCTCTCCCTCCT
58813371 CTCCCTC-CCTCTCCCTCC
1 CTCCCTCTCCTCTCCCTCC
58813389 CCCCCCCTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.00, C:0.68, G:0.00, T:0.32
Consensus pattern (20 bp):
CTCCCTCTCCTCTCCCTCCT
Found at i:58813388 original size:14 final size:14
Alignment explanation
Indices: 58813345--58813407 Score: 57
Period size: 14 Copynumber: 4.7 Consensus size: 14
58813335 GTGAGAAGTT
58813345 CCTCTCCTCCCTCTC
1 CCTC-CCTCCCTCTC
58813360 CTCTCCCT-CCTCTC
1 C-CTCCCTCCCTCTC
58813374 CCTCCCTCTCC-CTC
1 CCTCCCTC-CCTCTC
58813388 CC-CCC-CCCTC-C
1 CCTCCCTCCCTCTC
58813399 CC-CCCTCCC
1 CCTCCCTCCC
58813408 CCCCCCCCCC
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
11 8 0.19
12 5 0.12
13 9 0.21
14 12 0.28
15 6 0.14
16 3 0.07
ACGTcount: A:0.00, C:0.75, G:0.00, T:0.25
Consensus pattern (14 bp):
CCTCCCTCCCTCTC
Found at i:58813393 original size:1 final size:1
Alignment explanation
Indices: 58813387--58813595 Score: 328
Period size: 1 Copynumber: 209.0 Consensus size: 1
58813377 CCCTCTCCCT
* *
58813387 CCCCCCCCCTCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
58813452 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
* * * * * * * *
58813517 CCCCCTCTCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCTCCCTCTCCTCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
58813582 CCCCCCCCCCCCCC
1 CCCCCCCCCCCCCC
58813596 TCCCTCTCTC
Statistics
Matches: 188, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
1 188 1.00
ACGTcount: A:0.00, C:0.95, G:0.00, T:0.05
Consensus pattern (1 bp):
C
Found at i:58813604 original size:2 final size:2
Alignment explanation
Indices: 58813599--58813833 Score: 162
Period size: 2 Copynumber: 126.0 Consensus size: 2
58813589 CCCCCCCTCC
* * * * *
58813599 CT CT CT C- CT CT C- CT CC CT CT CC CC CC CT C- CT CT CT CT CC
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* *
58813638 CT CC CT CT C- CT CT CC CT C- CT CT CT C- CT CT C- CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
*
58813676 CC CT CT C- CT C- CT CT CT CT CT C- CT CT CT CT CT CT CT C- CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
*
58813714 CT C- CT C- CT C- CT C- CT CT CT CT C- CT CT CT CT CT CT CT CC
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* * * * * * * * * *
58813751 CT CT CT CC CT CT CT C- CC CC CC CC CC CC CC CC CT CT CC CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* *
58813792 CC CT CT CC CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
58813834 TACATACAAT
Statistics
Matches: 193, Mismatches: 23, Indels: 34
0.77 0.09 0.14
Matches are distributed among these distances:
1 17 0.09
2 176 0.91
ACGTcount: A:0.00, C:0.63, G:0.00, T:0.37
Consensus pattern (2 bp):
CT
Found at i:58813897 original size:19 final size:19
Alignment explanation
Indices: 58813875--58813932 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 19
58813865 TAAGAATTAG
*
58813875 TAATATATATAAATATTTT
1 TAATATATATTAATATTTT
*
58813894 TAATCTAT-TTAA-A-TTT
1 TAATATATATTAATATTTT
*
58813910 TAATGTATATTAATAATTTT
1 TAATATATATTAAT-ATTTT
58813930 TAA
1 TAA
58813933 GAAATTAGTA
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
16 10 0.31
17 5 0.16
18 3 0.09
19 8 0.25
20 6 0.19
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (19 bp):
TAATATATATTAATATTTT
Found at i:58814285 original size:20 final size:20
Alignment explanation
Indices: 58814242--58814285 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
58814232 AAAAAATGAT
* *
58814242 TAAAGATTGTAAAATTTATT
1 TAAAAATTGTAAAATTTATA
58814262 TAAAAATTGTGAAAA-TTATA
1 TAAAAATTGT-AAAATTTATA
58814282 TAAA
1 TAAA
58814286 TTGAAAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.52, C:0.00, G:0.09, T:0.39
Consensus pattern (20 bp):
TAAAAATTGTAAAATTTATA
Found at i:58814287 original size:30 final size:30
Alignment explanation
Indices: 58814203--58814287 Score: 75
Period size: 31 Copynumber: 2.8 Consensus size: 30
58814193 TTTAAATGTA
* * * *
58814203 AAAAATTGTGGAAATCA-ATAATTTTTTTT
1 AAAAATTGTGAAAATTATATAAATTTATTT
* * *
58814232 AAAAAATGATTAAAGATTGTA-AAATTTATTT
1 AAAAATTG-TGAAA-ATTATATAAATTTATTT
58814263 AAAAATTGTGAAAATTATATAAATT
1 AAAAATTGTGAAAATTATATAAATT
58814288 GAAAAAATTA
Statistics
Matches: 42, Mismatches: 10, Indels: 7
0.71 0.17 0.12
Matches are distributed among these distances:
29 12 0.29
30 12 0.29
31 17 0.40
32 1 0.02
ACGTcount: A:0.49, C:0.01, G:0.09, T:0.40
Consensus pattern (30 bp):
AAAAATTGTGAAAATTATATAAATTTATTT
Found at i:58814764 original size:20 final size:21
Alignment explanation
Indices: 58814735--58814815 Score: 60
Period size: 21 Copynumber: 3.8 Consensus size: 21
58814725 TTAAGAATTG
* *
58814735 TTTTAGTA-TTATTTTTATTT
1 TTTTAATATTTATTTTTATGT
*
58814755 TTTTAATATTTGTTTTTATGT
1 TTTTAATATTTATTTTTATGT
*
58814776 TTTTAAATATATTTGATTTATTATAT
1 TTTT--A-ATATTT-ATTT-TTATGT
58814802 TTTTAA-ATTT-TTTT
1 TTTTAATATTTATTTT
58814816 ATTTAATGAA
Statistics
Matches: 50, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
19 1 0.02
20 10 0.20
21 14 0.28
22 4 0.08
23 2 0.04
24 7 0.14
25 3 0.06
26 9 0.18
ACGTcount: A:0.25, C:0.00, G:0.05, T:0.70
Consensus pattern (21 bp):
TTTTAATATTTATTTTTATGT
Found at i:58814787 original size:24 final size:26
Alignment explanation
Indices: 58814760--58814809 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
58814750 TATTTTTTTA
*
58814760 ATATTTG-TTT-TTATGTTTTTAAAT
1 ATATTTGATTTATTATATTTTTAAAT
58814784 ATATTTGATTTATTATATTTTTAAAT
1 ATATTTGATTTATTATATTTTTAAAT
58814810 TTTTTTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (26 bp):
ATATTTGATTTATTATATTTTTAAAT
Found at i:58815256 original size:10 final size:9
Alignment explanation
Indices: 58815167--58815258 Score: 51
Period size: 9 Copynumber: 9.9 Consensus size: 9
58815157 GAGTTTTCAC
*
58815167 AAATTTTTT
1 AAATTTTTA
58815176 AAATTTTTA
1 AAATTTTTA
* *
58815185 ATATTTTTCT
1 AAATTTTT-A
*
58815195 ACA-TTTTA
1 AAATTTTTA
**
58815203 AAAAATTTA
1 AAATTTTTA
*
58815212 CAATTTTTA
1 AAATTTTTA
* *
58815221 TAGTTTTTA
1 AAATTTTTA
*
58815230 ACAATTTATTT
1 A-AATTT-TTA
58815241 AAATTTTTA
1 AAATTTTTA
58815250 AAGATTTTT
1 AA-ATTTTT
58815259 TACAACTTTT
Statistics
Matches: 62, Mismatches: 16, Indels: 9
0.71 0.18 0.10
Matches are distributed among these distances:
8 2 0.03
9 40 0.65
10 17 0.27
11 3 0.05
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.57
Consensus pattern (9 bp):
AAATTTTTA
Found at i:58815256 original size:20 final size:19
Alignment explanation
Indices: 58815211--58815260 Score: 50
Period size: 20 Copynumber: 2.6 Consensus size: 19
58815201 TAAAAAATTT
*
58815211 ACAA-TTTTTATAGTTTTTA
1 ACAATTTTTTA-AATTTTTA
58815230 ACAATTTATTTAAATTTTTA
1 ACAATTT-TTTAAATTTTTA
58815250 A-AGATTTTTTA
1 ACA-ATTTTTTA
58815261 CAACTTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
19 9 0.33
20 14 0.52
21 4 0.15
ACGTcount: A:0.36, C:0.04, G:0.04, T:0.56
Consensus pattern (19 bp):
ACAATTTTTTAAATTTTTA
Found at i:58815258 original size:30 final size:30
Alignment explanation
Indices: 58815207--58815273 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 30
58815197 ATTTTAAAAA
*
58815207 ATTTACAATTTTTATAGTTTTTAACAA-TTT
1 ATTTA-AATTTTTAAAGTTTTTAACAACTTT
*
58815237 ATTTAAATTTTTAAAGATTTTTTACAACTTT
1 ATTTAAATTTTTAAAG-TTTTTAACAACTTT
*
58815268 TTTTAA
1 ATTTAA
58815274 TAATTTAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
29 10 0.31
30 14 0.44
31 8 0.25
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.57
Consensus pattern (30 bp):
ATTTAAATTTTTAAAGTTTTTAACAACTTT
Found at i:58815308 original size:28 final size:29
Alignment explanation
Indices: 58815265--58815347 Score: 86
Period size: 28 Copynumber: 3.0 Consensus size: 29
58815255 TTTTTACAAC
*
58815265 TTTTTTTAATAA--TTTAAATAATTTTTA
1 TTTTTTTGATAATTTTTAAATAATTTTTA
*
58815292 TTATTTTT-AT-ATTTTTAAATAAATTTTAA
1 TT-TTTTTGATAATTTTTAAAT-AATTTTTA
*
58815321 TTTTTTTGTTAATTTTT-AATAATTTTT
1 TTTTTTTGATAATTTTTAAATAATTTTT
58815348 CCAATTTGTA
Statistics
Matches: 47, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
26 1 0.02
27 4 0.09
28 23 0.49
29 13 0.28
30 6 0.13
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.66
Consensus pattern (29 bp):
TTTTTTTGATAATTTTTAAATAATTTTTA
Found at i:58815336 original size:29 final size:29
Alignment explanation
Indices: 58815267--58815347 Score: 78
Period size: 29 Copynumber: 2.8 Consensus size: 29
58815257 TTTACAACTT
*
58815267 TTTTTAATAA-TTTAAAT-AATTTTTATTA
1 TTTTT-ATAATTTTAAATAAATTTTAATTA
*
58815295 TTTTTATATTTTTAAATAAATTTTAATT-
1 TTTTTATAATTTTAAATAAATTTTAATTA
* * *
58815323 TTTTTGTTAATTTTTAATAATTTTT
1 TTTTT-ATAATTTTAAATAAATTTT
58815348 CCAATTTGTA
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
27 3 0.07
28 17 0.39
29 24 0.55
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.65
Consensus pattern (29 bp):
TTTTTATAATTTTAAATAAATTTTAATTA
Found at i:58820062 original size:20 final size:21
Alignment explanation
Indices: 58820037--58820077 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
58820027 ATGAATTCTT
58820037 TAAATTA-TT-TTCATTTAAAA
1 TAAATTAGTTATT-ATTTAAAA
58820057 TAAATTAGTTATTATTTAAAA
1 TAAATTAGTTATTATTTAAAA
58820078 ATGAAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.37
21 10 0.53
22 2 0.11
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.49
Consensus pattern (21 bp):
TAAATTAGTTATTATTTAAAA
Found at i:58821927 original size:20 final size:20
Alignment explanation
Indices: 58821899--58821944 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
58821889 CCTTCTTTCA
*
58821899 TTTCATTTCATTCCATTTTT
1 TTTCTTTTCATTCCATTTTT
* * *
58821919 TTTCTTTTCTTTTCTTTTTT
1 TTTCTTTTCATTCCATTTTT
58821939 TTTCTT
1 TTTCTT
58821945 AATCGTTGAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.76
Consensus pattern (20 bp):
TTTCTTTTCATTCCATTTTT
Found at i:58821941 original size:10 final size:10
Alignment explanation
Indices: 58821914--58821944 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
58821904 TTTCATTCCA
58821914 TTTTTTTTCT
1 TTTTTTTTCT
*
58821924 TTTCTTTTCT
1 TTTTTTTTCT
58821934 TTTTTTTTCT
1 TTTTTTTTCT
58821944 T
1 T
58821945 AATCGTTGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (10 bp):
TTTTTTTTCT
Found at i:58829557 original size:26 final size:26
Alignment explanation
Indices: 58829528--58829580 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
58829518 GATTCATGTA
58829528 CTTTATTTTT-TTCTTTTACATTATTT
1 CTTTATTTTTCTTCTTTT-CATTATTT
*
58829554 CTTTATTTTTCTTCTTTTCCTTATTT
1 CTTTATTTTTCTTCTTTTCATTATTT
58829580 C
1 C
58829581 ATTTTCCCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 18 0.72
27 7 0.28
ACGTcount: A:0.11, C:0.17, G:0.00, T:0.72
Consensus pattern (26 bp):
CTTTATTTTTCTTCTTTTCATTATTT
Found at i:58830512 original size:15 final size:16
Alignment explanation
Indices: 58830492--58830530 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
58830482 GACATTGAAA
58830492 CTGTTATCTG-ACAAT
1 CTGTTATCTGAACAAT
*
58830507 CTGTTA-CTGAATAAT
1 CTGTTATCTGAACAAT
58830522 CTGTTATCT
1 CTGTTATCT
58830531 TAATATAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 3 0.14
15 16 0.76
16 2 0.10
ACGTcount: A:0.26, C:0.18, G:0.13, T:0.44
Consensus pattern (16 bp):
CTGTTATCTGAACAAT
Found at i:58842322 original size:17 final size:17
Alignment explanation
Indices: 58842296--58842329 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
58842286 ATTGAATCGG
58842296 TTTTTAATTTTTAAATA
1 TTTTTAATTTTTAAATA
* *
58842313 TTTTTTATTTTTTAATA
1 TTTTTAATTTTTAAATA
58842330 ATTTATTCAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTAATTTTTAAATA
Found at i:58845565 original size:12 final size:12
Alignment explanation
Indices: 58845550--58845579 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
58845540 ACAATAATAC
58845550 TATATATAAATG
1 TATATATAAATG
*
58845562 TATATATATATG
1 TATATATAAATG
58845574 TATATA
1 TATATA
58845580 ATAGAAATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (12 bp):
TATATATAAATG
Found at i:58845685 original size:19 final size:17
Alignment explanation
Indices: 58845661--58845707 Score: 51
Period size: 16 Copynumber: 2.7 Consensus size: 17
58845651 AATTAAAGTA
*
58845661 ATAAAAAATAATACTATAT
1 ATAAAAAAT-ATA-TATAC
*
58845680 ATAAAATATATATATAC
1 ATAAAAAATATATATAC
58845697 AT-AAAAATATA
1 ATAAAAAATATA
58845708 CACTAATATA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
16 8 0.32
17 6 0.24
18 3 0.12
19 8 0.32
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (17 bp):
ATAAAAAATATATATAC
Found at i:58845703 original size:18 final size:19
Alignment explanation
Indices: 58845664--58845712 Score: 59
Period size: 17 Copynumber: 2.7 Consensus size: 19
58845654 TAAAGTAATA
*
58845664 AAAAATA-ATACTATATAT
1 AAAAATATATACTATACAT
58845682 -AAAATATATA-TATACAT
1 AAAAATATATACTATACAT
*
58845699 AAAAATATACACTA
1 AAAAATATATACTA
58845713 ATATATAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 12 0.46
18 12 0.46
19 2 0.08
ACGTcount: A:0.61, C:0.08, G:0.00, T:0.31
Consensus pattern (19 bp):
AAAAATATATACTATACAT
Found at i:58845817 original size:3 final size:3
Alignment explanation
Indices: 58845809--58845931 Score: 55
Period size: 3 Copynumber: 40.3 Consensus size: 3
58845799 AATAGGGGTG
* *
58845809 ATA ATA ATA ATA ATA CA-A ACA ATA ATA CAT- ATA TATA ATA ATA GTA
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA -ATA ATA -ATA ATA ATA ATA
*
58845855 GTTA GA-A ATA A-A A-A ATA ATA TATA CATGA GA-A ATA ATA ATA ATA
1 -ATA -ATA ATA ATA ATA ATA ATA -ATA -AT-A -ATA ATA ATA ATA ATA
* *
58845899 AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A
1 ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
58845932 AACAAAGCTT
Statistics
Matches: 96, Mismatches: 10, Indels: 28
0.72 0.07 0.21
Matches are distributed among these distances:
2 13 0.14
3 65 0.68
4 16 0.17
5 2 0.02
ACGTcount: A:0.63, C:0.03, G:0.05, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:58846322 original size:23 final size:22
Alignment explanation
Indices: 58846259--58846326 Score: 66
Period size: 22 Copynumber: 3.0 Consensus size: 22
58846249 AACCTTTTTT
**
58846259 ACAAAAAAAACACCTCC-AAAAA
1 ACAAAAAAAA-ACCTCCTCCAAA
58846281 ACAAAAAAAAACCTCCTCCAAA
1 ACAAAAAAAAACCTCCTCCAAA
* * *
58846303 ACAAAGAACAATCCTTCTCCAAA
1 ACAAA-AAAAAACCTCCTCCAAA
58846326 A
1 A
58846327 AACCAAAAAC
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
21 6 0.15
22 18 0.46
23 15 0.38
ACGTcount: A:0.59, C:0.29, G:0.01, T:0.10
Consensus pattern (22 bp):
ACAAAAAAAAACCTCCTCCAAA
Found at i:58846866 original size:40 final size:40
Alignment explanation
Indices: 58846822--58846973 Score: 196
Period size: 40 Copynumber: 3.8 Consensus size: 40
58846812 GTGTTTTTAG
*
58846822 TCTGCTCCACTACTACTTAGGGAGATAAGACTTGATGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
* * * * ***
58846862 TCTGCTTCACTATTGCTTAGGGAAATAAGATCTGTGGTTTTA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CT-TGATGCGA
*
58846904 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTAATGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
*
58846944 TCTACTCCACTACTGCTTAGGGAGATAAGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA
58846974 TTGTAATCTT
Statistics
Matches: 93, Mismatches: 17, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
40 58 0.62
41 4 0.04
42 31 0.33
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (40 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
Found at i:58846913 original size:82 final size:83
Alignment explanation
Indices: 58846806--58846974 Score: 259
Period size: 82 Copynumber: 2.0 Consensus size: 83
58846796 CATGGGGATG
* * * * *
58846806 AGATTTGTGTTTTTAGTCTGCTCCACTACTACTTAGGGAGATAAGACTTGATGCGATCTGCTTCA
1 AGATCTGTGGTTTTAGTCTGCTCCACTACTACTTAGGGAGATAAGACTTAATGCGATCTACTCCA
*
58846871 CTATTGCTTAGGGAAATA
66 CTACTGCTTAGGGAAATA
*
58846889 AGATCTGTGGTTTTA-TCTGCTCCACTACTGCTTAGGGAGATAAGACTTAATGCGATCTACTCCA
1 AGATCTGTGGTTTTAGTCTGCTCCACTACTACTTAGGGAGATAAGACTTAATGCGATCTACTCCA
*
58846953 CTACTGCTTAGGGAGATA
66 CTACTGCTTAGGGAAATA
58846971 AGAT
1 AGAT
58846975 TGTAATCTTC
Statistics
Matches: 78, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
82 65 0.83
83 13 0.17
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (83 bp):
AGATCTGTGGTTTTAGTCTGCTCCACTACTACTTAGGGAGATAAGACTTAATGCGATCTACTCCA
CTACTGCTTAGGGAAATA
Found at i:58847212 original size:45 final size:45
Alignment explanation
Indices: 58847161--58847359 Score: 111
Period size: 45 Copynumber: 4.4 Consensus size: 45
58847151 GATCTGCAAT
*
58847161 CTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTTATCGG
1 CTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTTATCAG
* * * * * * ** *
58847206 CTTCAATGTACTCCACTG-TAG-TCACAGGGAGGTAAAATCTGCCAT
1 CTTCAATCTATTCCACTGCCAGAT-ACAGGGAGATAGAGT-TATCAG
* * * ** * * *
58847251 CTTCGATCTGCTT-CACTGCCTA-ATACAGGAAGGCA-AGATCTGCAAT
1 CTTCAATCT-ATTCCACTGCC-AGATACAGGGAGATAGAGTTAT-C-AG
* *
58847297 CTTCAATCTATTCCACTGCCAGATACAGTGAGATAGAGTTATCGG
1 CTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTTATCAG
* *
58847342 CTTCAATGTACTCCACTG
1 CTTCAATCTATTCCACTG
58847360 TGGTCAGGGA
Statistics
Matches: 110, Mismatches: 33, Indels: 22
0.67 0.20 0.13
Matches are distributed among these distances:
43 1 0.01
44 15 0.14
45 51 0.46
46 37 0.34
47 6 0.05
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.28
Consensus pattern (45 bp):
CTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTTATCAG
Found at i:58847314 original size:46 final size:45
Alignment explanation
Indices: 58847134--58847324 Score: 129
Period size: 46 Copynumber: 4.2 Consensus size: 45
58847124 CCACTTCCTA
* *
58847134 CCAATATAGGAAGGCAGGATCTGCAATCTTCAATCTATTCCACTG
1 CCAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTG
* ** * * ** * *
58847179 CCAGATACAGGGAGATAGAGTTAT-C-GGCTTCAATGTACTCCACTG
1 CCA-ATACAGGAAGGCA-AGATCTGCAATCTTCAATCTATTCCACTG
* * * * * * * *
58847224 -TAGTCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTT-CACTG
1 CCAAT-ACAGGAAGGCAAGATCTGCAATCTTCAATCT-ATTCCACTG
58847269 CCTAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTG
1 CC-AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTG
58847315 CCAGATACAG
1 CCA-ATACAG
58847325 TGAGATAGAG
Statistics
Matches: 105, Mismatches: 31, Indels: 19
0.68 0.20 0.12
Matches are distributed among these distances:
43 4 0.04
44 12 0.11
45 34 0.32
46 50 0.48
47 5 0.05
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.26
Consensus pattern (45 bp):
CCAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTG
Found at i:58847439 original size:134 final size:135
Alignment explanation
Indices: 58847136--58847440 Score: 531
Period size: 136 Copynumber: 2.3 Consensus size: 135
58847126 ACTTCCTACC
* *
58847136 AATATAGGAAGGCAGGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTT
1 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTT
58847201 ATCGGCTTCAATGTACTCCACTGTAGTCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCA
66 ATCGGCTTCAATGTACTCCACTGTAGT-ACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCA
*
58847266 CTGCCT
130 CTGCCA
*
58847272 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGTGAGATAGAGTT
1 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTT
* * *
58847337 ATCGGCTTCAATGTACTCCACTGTGGT-CAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGC
66 ATCGGCTTCAATGTACTCCACTGTAGTACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCAC
58847401 TGCCA
131 TGCCA
58847406 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTA
1 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTA
58847441 CTTCACCACC
Statistics
Matches: 162, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
134 74 0.46
136 88 0.54
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (135 bp):
AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTT
ATCGGCTTCAATGTACTCCACTGTAGTACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCAC
TGCCA
Found at i:58847521 original size:44 final size:45
Alignment explanation
Indices: 58847376--58847953 Score: 405
Period size: 44 Copynumber: 13.1 Consensus size: 45
58847366 GGGAGGTAAA
* * * * * * *
58847376 ATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAG
1 ATCTGCTATCTTGGATCTACTTCACTACC-AATATAGGAAGACAAG
* ** * * *
58847422 ATCTGCAATCTTCAATCTACTTCACCACCAGTATGGGAAGACAAG
1 ATCTGCTATCTTGGATCTACTTCACTACCAATATAGGAAGACAAG
* * * *
58847467 ATCTGC-ATCTTGGATCCACTTC-CTATCAATATAGGAAGATAGG
1 ATCTGCTATCTTGGATCTACTTCACTACCAATATAGGAAGACAAG
* * * * *
58847510 ACCTGCTATCTTCGATCTACTTCAC-GCCAATACATGAAGACAAG
1 ATCTGCTATCTTGGATCTACTTCACTACCAATATAGGAAGACAAG
* * * * *
58847554 ATCTACTTTC-TGCGATCTACTTCGCCACCAATATGGGAAGACAAG
1 ATCTGCTATCTTG-GATCTACTTCACTACCAATATAGGAAGACAAG
* * * * * *
58847599 ATCTGC-ATATTGAATCCACTTC-CTATCAATATAGGAAGATAGG
1 ATCTGCTATCTTGGATCTACTTCACTACCAATATAGGAAGACAAG
* * * * *
58847642 ACCTGCTATCTTCGATCTACTTCAC-GCCAATACATGAAGACAAG
1 ATCTGCTATCTTGGATCTACTTCACTACCAATATAGGAAGACAAG
* * * *
58847686 ATCTGCTTTC-TGCGATCTACTTCGCCACCAATATGGGAAGACAAG
1 ATCTGCTATCTTG-GATCTACTTCACTACCAATATAGGAAGACAAG
* * * * *
58847731 ATCTGC-ATCTTCGATCCACTTC-CTACCAATATAGAAAGATAGG
1 ATCTGCTATCTTGGATCTACTTCACTACCAATATAGGAAGACAAG
* * * * *
58847774 ATCTGCTACCTTCGATCTACTTCAC-GCCAATACATGAAGACAAG
1 ATCTGCTATCTTGGATCTACTTCACTACCAATATAGGAAGACAAG
* * *
58847818 ATCTGCT-TAC-TGCGATCTACTTCGCCACCAATATGGGAAGACAAG
1 ATCTGCTAT-CTTG-GATCTACTTCACTACCAATATAGGAAGACAAG
* * * * *
58847863 ATCTGC-ATCCTGGATCCACTTC-CTATCAATATAGGAAGATAGG
1 ATCTGCTATCTTGGATCTACTTCACTACCAATATAGGAAGACAAG
* * * * * *
58847906 ACCTGCTATCTTCGATCTGCTTCAC-GCCAATACATGAAGACAAG
1 ATCTGCTATCTTGGATCTACTTCACTACCAATATAGGAAGACAAG
58847950 ATCT
1 ATCT
58847954 ACTTTAATGA
Statistics
Matches: 405, Mismatches: 108, Indels: 40
0.73 0.20 0.07
Matches are distributed among these distances:
43 87 0.21
44 206 0.51
45 90 0.22
46 22 0.05
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (45 bp):
ATCTGCTATCTTGGATCTACTTCACTACCAATATAGGAAGACAAG
Found at i:58847643 original size:132 final size:132
Alignment explanation
Indices: 58847436--58847958 Score: 920
Period size: 132 Copynumber: 4.0 Consensus size: 132
58847426 GCAATCTTCA
* *
58847436 ATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAG
1 ATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAG
58847501 GAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTG
66 GAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTG
58847566 CG
131 CG
* *
58847568 ATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATATTGAATCCACTTCCTATCAATATAG
1 ATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAG
*
58847633 GAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTG
66 GAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTG
58847698 CG
131 CG
* *
58847700 ATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAG
1 ATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAG
* * * * *
58847765 AAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTACTG
66 GAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTG
58847830 CG
131 CG
*
58847832 ATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCCTGGATCCACTTCCTATCAATATAG
1 ATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAG
*
58847897 GAAGATAGGACCTGCTATCTTCGATCTGCTTCACGCCAATACATGAAGACAAGATCTACTTT
66 GAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTT
58847959 AATGACTTCA
Statistics
Matches: 369, Mismatches: 22, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
132 369 1.00
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (132 bp):
ATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAG
GAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTG
CG
Found at i:58860095 original size:12 final size:12
Alignment explanation
Indices: 58860080--58860109 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
58860070 ACAATAATAC
58860080 TATATATAAATG
1 TATATATAAATG
*
58860092 TATATATATATG
1 TATATATAAATG
58860104 TATATA
1 TATATA
58860110 ATAGAAATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (12 bp):
TATATATAAATG
Found at i:58860216 original size:17 final size:17
Alignment explanation
Indices: 58860194--58860236 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
58860184 TAAAGTAATA
*
58860194 AAAATA-ATACTATATAT
1 AAAATATATA-TATACAT
58860211 AAAATATATATATACAT
1 AAAATATATATATACAT
58860228 AAAA-ATATA
1 AAAATATATA
58860237 CACTAATATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 5 0.21
17 16 0.67
18 3 0.12
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.33
Consensus pattern (17 bp):
AAAATATATATATACAT
Found at i:58860236 original size:18 final size:19
Alignment explanation
Indices: 58860191--58860241 Score: 63
Period size: 18 Copynumber: 2.8 Consensus size: 19
58860181 AATTAAAGTA
*
58860191 ATAAAAATA-ATACTATAT
1 ATAAAAATATATACTATAC
58860209 AT-AAAATATATA-TATAC
1 ATAAAAATATATACTATAC
*
58860226 ATAAAAATATACACTA
1 ATAAAAATATATACTA
58860242 ATATATAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
17 12 0.43
18 14 0.50
19 2 0.07
ACGTcount: A:0.61, C:0.08, G:0.00, T:0.31
Consensus pattern (19 bp):
ATAAAAATATATACTATAC
Found at i:58860464 original size:3 final size:3
Alignment explanation
Indices: 58860451--58860535 Score: 63
Period size: 3 Copynumber: 28.3 Consensus size: 3
58860441 GAGGGCATAT
*
58860451 ATA AT- ATA ATA ATA AT- ATA AAA ATA ATA TATA CATGA GA-A ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA -AT-A -ATA ATA ATA
* *
58860497 ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
58860536 AACAAAGCTC
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
2 9 0.14
3 48 0.73
4 7 0.11
5 2 0.03
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:58860467 original size:11 final size:11
Alignment explanation
Indices: 58860451--58860535 Score: 66
Period size: 11 Copynumber: 7.4 Consensus size: 11
58860441 GAGGGCATAT
58860451 ATAATATAATA
1 ATAATATAATA
*
58860462 ATAATATAAAA
1 ATAATATAATA
58860473 ATAATAT-ATA
1 ATAATATAATA
*
58860483 CATGAGAAATAATA
1 -AT-A-ATATAATA
58860497 ATAATA-ATATAA
1 ATAATATA-AT-A
*
58860509 ATAATAGTAAAA
1 ATAATA-TAATA
*
58860521 ATAATAAAATA
1 ATAATATAATA
58860532 ATAA
1 ATAA
58860536 AACAAAGCTC
Statistics
Matches: 59, Mismatches: 7, Indels: 16
0.72 0.09 0.20
Matches are distributed among these distances:
10 3 0.05
11 30 0.51
12 16 0.27
13 6 0.10
14 4 0.07
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.29
Consensus pattern (11 bp):
ATAATATAATA
Found at i:58860523 original size:24 final size:23
Alignment explanation
Indices: 58860451--58860532 Score: 76
Period size: 24 Copynumber: 3.4 Consensus size: 23
58860441 GAGGGCATAT
58860451 ATAATATAATAATAATATAAAAATA
1 ATAATAT-A-AATAATATAAAAATA
* * *
58860476 AT-ATATACATGAGAAATAATAATA
1 ATAATATAAAT-A-ATATAAAAATA
58860500 ATAATATAAATAATAGTAAAAATA
1 ATAATATAAATAATA-TAAAAATA
*
58860524 ATAAAATAA
1 ATAATATAA
58860533 TAAAACAAAG
Statistics
Matches: 46, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
22 2 0.04
23 4 0.09
24 31 0.67
25 9 0.20
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.29
Consensus pattern (23 bp):
ATAATATAAATAATATAAAAATA
Found at i:58860531 original size:38 final size:36
Alignment explanation
Indices: 58860451--58860535 Score: 91
Period size: 35 Copynumber: 2.3 Consensus size: 36
58860441 GAGGGCATAT
* * * *
58860451 ATAATATAATAATAATATAAAAATAATATATACATG
1 ATAAAATAATAATAATATAAAAATAATATAAAAATA
* *
58860487 A-GAAATAATAATAATAATATAAATAATAGTAAAAATA
1 ATAAAATAATAATAAT-ATAAAAATAATA-TAAAAATA
58860524 ATAAAATAATAA
1 ATAAAATAATAA
58860536 AACAAAGCTC
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
35 12 0.31
36 12 0.31
37 6 0.15
38 9 0.23
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.29
Consensus pattern (36 bp):
ATAAAATAATAATAATATAAAAATAATATAAAAATA
Found at i:58860926 original size:23 final size:22
Alignment explanation
Indices: 58860863--58860930 Score: 66
Period size: 22 Copynumber: 3.0 Consensus size: 22
58860853 AACCTTTTTT
**
58860863 ACAAAAAAAACACCTCC-AAAAA
1 ACAAAAAAAA-ACCTCCTCCAAA
58860885 ACAAAAAAAAACCTCCTCCAAA
1 ACAAAAAAAAACCTCCTCCAAA
* * *
58860907 ACAAAGAACAATCCTTCTCCAAA
1 ACAAA-AAAAAACCTCCTCCAAA
58860930 A
1 A
58860931 AACCAAAAAC
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
21 6 0.15
22 18 0.46
23 15 0.38
ACGTcount: A:0.59, C:0.29, G:0.01, T:0.10
Consensus pattern (22 bp):
ACAAAAAAAAACCTCCTCCAAA
Found at i:58861880 original size:17 final size:17
Alignment explanation
Indices: 58861858--58861890 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
58861848 TGATAAGCAT
*
58861858 ATAATATATATACACAC
1 ATAATATATACACACAC
58861875 ATAATATATACACACA
1 ATAATATATACACACA
58861891 ATTATAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.55, C:0.18, G:0.00, T:0.27
Consensus pattern (17 bp):
ATAATATATACACACAC
Found at i:58862025 original size:17 final size:17
Alignment explanation
Indices: 58862003--58862036 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
58861993 GCACAAATAC
58862003 TTAAAAAAAATCCATAA
1 TTAAAAAAAATCCATAA
58862020 TTAAAAAAAATCCATAA
1 TTAAAAAAAATCCATAA
58862037 CCACTAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.65, C:0.12, G:0.00, T:0.24
Consensus pattern (17 bp):
TTAAAAAAAATCCATAA
Found at i:58862736 original size:22 final size:22
Alignment explanation
Indices: 58862702--58862743 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
58862692 ATAAAATTAA
58862702 AAAAAGAAAAATGAATCAATCC
1 AAAAAGAAAAATGAATCAATCC
* *
58862724 AAAAATAATAATGAATCAAT
1 AAAAAGAAAAATGAATCAAT
58862744 TCATTCTCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.64, C:0.10, G:0.07, T:0.19
Consensus pattern (22 bp):
AAAAAGAAAAATGAATCAATCC
Found at i:58863533 original size:18 final size:18
Alignment explanation
Indices: 58863503--58863538 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
58863493 ATATTTGTAC
58863503 ATATTATTTAAATTTTAT
1 ATATTATTTAAATTTTAT
58863521 ATATT-TTTAAAATTTTAT
1 ATATTATTT-AAATTTTAT
58863539 TTTCTCTCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.18
18 14 0.82
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
ATATTATTTAAATTTTAT
Found at i:58863988 original size:18 final size:17
Alignment explanation
Indices: 58863965--58864009 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
58863955 TAAAAAATAT
58863965 TATTAAAAATTATAAAAA
1 TATTAAAAATT-TAAAAA
*
58863983 TATTAAAAAATTTAAAAG
1 TATT-AAAAATTTAAAAA
*
58864001 TAATAAAAA
1 TATTAAAAA
58864010 GACCATTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 5 0.21
18 12 0.50
19 7 0.29
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (17 bp):
TATTAAAAATTTAAAAA
Found at i:58864810 original size:18 final size:18
Alignment explanation
Indices: 58864755--58864810 Score: 51
Period size: 18 Copynumber: 2.9 Consensus size: 18
58864745 ACTTTTCAAC
58864755 TTTTAAATAGTTTTGATTAAT
1 TTTTAAATA--TTT-ATTAAT
* *
58864776 TTTTAATTTTTTATTAAT
1 TTTTAAATATTTATTAAT
58864794 TTTTAGAATATTT-TTAA
1 TTTTA-AATATTTATTAA
58864811 ATGTATTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
18 15 0.50
19 8 0.27
21 7 0.23
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.62
Consensus pattern (18 bp):
TTTTAAATATTTATTAAT
Found at i:58872178 original size:44 final size:45
Alignment explanation
Indices: 58872127--58872219 Score: 138
Period size: 44 Copynumber: 2.1 Consensus size: 45
58872117 TACAACATCT
58872127 ATTCCATTCAACCAAACACA-AGAATT-CT-ATTACAGCTCTATTCC
1 ATTCCATTCAACCAAACA-ATA-AATTACTGATTACAGCTCTATTCC
58872171 ATTCCATTCAACCAAACAATTAAATTACTGATTACAGCTCTATTCC
1 ATTCCATTCAACCAAACAA-TAAATTACTGATTACAGCTCTATTCC
58872217 ATT
1 ATT
58872220 ACAGCTCTAT
Statistics
Matches: 45, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
43 1 0.02
44 22 0.49
45 3 0.07
46 19 0.42
ACGTcount: A:0.37, C:0.27, G:0.04, T:0.32
Consensus pattern (45 bp):
ATTCCATTCAACCAAACAATAAATTACTGATTACAGCTCTATTCC
Found at i:58872256 original size:16 final size:16
Alignment explanation
Indices: 58872201--58872255 Score: 76
Period size: 16 Copynumber: 3.4 Consensus size: 16
58872191 TAAATTACTG
58872201 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
**
58872217 ATTACAGCTCTATTTA
1 ATTACAGCTCTATTCC
58872233 ATTACAG-TCCTATTCC
1 ATTACAGCT-CTATTCC
58872249 ATTACAG
1 ATTACAG
58872256 TGAATCAAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
15 1 0.03
16 33 0.97
ACGTcount: A:0.29, C:0.25, G:0.07, T:0.38
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:58873126 original size:20 final size:20
Alignment explanation
Indices: 58873101--58873140 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
58873091 TAAGGTTTTT
58873101 CTTGAGCTAGAGAGAGAAAG
1 CTTGAGCTAGAGAGAGAAAG
* * *
58873121 CTTGAGTTAGTGTGAGAAAG
1 CTTGAGCTAGAGAGAGAAAG
58873141 TGAAAAACAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.35, C:0.07, G:0.35, T:0.23
Consensus pattern (20 bp):
CTTGAGCTAGAGAGAGAAAG
Found at i:58873436 original size:24 final size:26
Alignment explanation
Indices: 58873409--58873458 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
58873399 AATAAGTTAT
*
58873409 TTTTATACA-ATA-ATTATTTTTAAA
1 TTTTAGACATATATATTATTTTTAAA
*
58873433 TTTTAGACATATATTTTATTTTTAAA
1 TTTTAGACATATATATTATTTTTAAA
58873459 ATATAATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 8 0.36
25 3 0.14
26 11 0.50
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.56
Consensus pattern (26 bp):
TTTTAGACATATATATTATTTTTAAA
Found at i:58873574 original size:20 final size:20
Alignment explanation
Indices: 58873549--58873620 Score: 63
Period size: 21 Copynumber: 3.4 Consensus size: 20
58873539 TAACTTACTA
58873549 AATATTTAATTACATTATAT
1 AATATTTAATTACATTATAT
* *
58873569 AATATTTATTATAAATTATTTAT
1 AATATTTAAT-TACATTA--TAT
*
58873592 ACTAATTTCAATTACATTATAT
1 AAT-ATTT-AATTACATTATAT
*
58873614 AGTATTT
1 AATATTT
58873621 GATAATTATT
Statistics
Matches: 41, Mismatches: 6, Indels: 9
0.73 0.11 0.16
Matches are distributed among these distances:
20 9 0.22
21 10 0.24
22 5 0.12
23 5 0.12
24 10 0.24
25 2 0.05
ACGTcount: A:0.42, C:0.06, G:0.01, T:0.51
Consensus pattern (20 bp):
AATATTTAATTACATTATAT
Found at i:58873784 original size:15 final size:15
Alignment explanation
Indices: 58873762--58873799 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
58873752 TAGGGGGCTA
58873762 AAATTAAAAATATAT
1 AAATTAAAAATATAT
* *
58873777 ATATTAAAAATATTT
1 AAATTAAAAATATAT
58873792 AAATTAAA
1 AAATTAAA
58873800 TTATTAATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
AAATTAAAAATATAT
Found at i:58882264 original size:20 final size:20
Alignment explanation
Indices: 58882239--58882303 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 20
58882229 TCTTGAAGAA
*
58882239 GTGCTCATGTTAGCACTACG
1 GTGCTCATGATAGCACTACG
* **
58882259 GTGCTCCTGATAGTGCTACG
1 GTGCTCATGATAGCACTACG
* * * *
58882279 ATGTTCTTGGTAGCACTACG
1 GTGCTCATGATAGCACTACG
58882299 GTGCT
1 GTGCT
58882304 TCTAATAGCA
Statistics
Matches: 33, Mismatches: 12, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.17, C:0.23, G:0.28, T:0.32
Consensus pattern (20 bp):
GTGCTCATGATAGCACTACG
Found at i:58882312 original size:20 final size:20
Alignment explanation
Indices: 58882249--58882313 Score: 60
Period size: 20 Copynumber: 3.2 Consensus size: 20
58882239 GTGCTCATGT
*
58882249 TAGCACTACGGTGCTCCTGA
1 TAGCACTACGGTGCTTCTGA
** * *
58882269 TAGTGCTACGATG-TTCTTGG
1 TAGCACTACGGTGCTTC-TGA
*
58882289 TAGCACTACGGTGCTTCTAA
1 TAGCACTACGGTGCTTCTGA
58882309 TAGCA
1 TAGCA
58882314 TATGTATGCT
Statistics
Matches: 33, Mismatches: 10, Indels: 4
0.70 0.21 0.09
Matches are distributed among these distances:
19 2 0.06
20 28 0.85
21 3 0.09
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.31
Consensus pattern (20 bp):
TAGCACTACGGTGCTTCTGA
Found at i:58883036 original size:28 final size:28
Alignment explanation
Indices: 58883002--58883057 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
58882992 TGTGTATAAC
58883002 ACTTATTCATGATCATAAGATGGTATGT
1 ACTTATTCATGATCATAAGATGGTATGT
58883030 ACTTATTCATGATCATAAGATGGTATGT
1 ACTTATTCATGATCATAAGATGGTATGT
58883058 TTATAAGTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.39
Consensus pattern (28 bp):
ACTTATTCATGATCATAAGATGGTATGT
Found at i:58884950 original size:22 final size:22
Alignment explanation
Indices: 58884922--58884987 Score: 89
Period size: 22 Copynumber: 3.0 Consensus size: 22
58884912 CTCCAATTAC
58884922 TAGCACATTAGTGCTCTCTGTT
1 TAGCACATTAGTGCTCTCTGTT
* * *
58884944 TAGCACATTCGTGTTCTCTGTA
1 TAGCACATTAGTGCTCTCTGTT
58884966 TAGCAC-TTCAGTGCTCTCTGTT
1 TAGCACATT-AGTGCTCTCTGTT
58884988 CATTAGTGCA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
21 2 0.05
22 35 0.95
ACGTcount: A:0.17, C:0.24, G:0.18, T:0.41
Consensus pattern (22 bp):
TAGCACATTAGTGCTCTCTGTT
Found at i:58890446 original size:23 final size:23
Alignment explanation
Indices: 58890396--58890446 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
58890386 GGAGAGTATT
*
58890396 TTATATTTAAGATTTATTTAATA
1 TTATATTTAAGATTTATTAAATA
* *
58890419 TTATATTTGATATTTA-TAAATA
1 TTATATTTAAGATTTATTAAATA
58890441 TATATA
1 T-TATA
58890447 AAATAATTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 6 0.25
23 18 0.75
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (23 bp):
TTATATTTAAGATTTATTAAATA
Found at i:58894567 original size:18 final size:18
Alignment explanation
Indices: 58894544--58894586 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
58894534 GAATAGGTTT
58894544 TTAATTAAATAAATTT-AA
1 TTAATTAAA-AAATTTAAA
* *
58894562 TTAATTGAAAATTTTAAA
1 TTAATTAAAAAATTTAAA
58894580 TTAATTA
1 TTAATTA
58894587 CACTTTGAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 5 0.24
18 16 0.76
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (18 bp):
TTAATTAAAAAATTTAAA
Found at i:58897966 original size:30 final size:30
Alignment explanation
Indices: 58897914--58897972 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
58897904 ACACGGGCTA
* * *
58897914 TCACATGGGCATGTGGTTAGCCCGTGTGGC
1 TCACACGGGCATGTGCTCAGCCCGTGTGGC
*
58897944 TCACACGGGCGTGTGCTCAGCCCGTGTGG
1 TCACACGGGCATGTGCTCAGCCCGTGTGG
58897973 AAATGGTCTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.12, C:0.27, G:0.37, T:0.24
Consensus pattern (30 bp):
TCACACGGGCATGTGCTCAGCCCGTGTGGC
Found at i:58899795 original size:6 final size:6
Alignment explanation
Indices: 58899784--58899842 Score: 66
Period size: 6 Copynumber: 9.7 Consensus size: 6
58899774 AAGAAGTCTA
* * *
58899784 AAAAAT AAAAAT AAACAG AAAAAT AAAAAT -AGAAT AAAATAT AAAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAA-AT AAAAAT
58899832 GAAAAAT AAAA
1 -AAAAAT AAAA
58899843 GAAAATAAAT
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
5 4 0.09
6 28 0.64
7 12 0.27
ACGTcount: A:0.78, C:0.02, G:0.05, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:58899827 original size:18 final size:17
Alignment explanation
Indices: 58899782--58899857 Score: 66
Period size: 18 Copynumber: 4.3 Consensus size: 17
58899772 TAAAGAAGTC
58899782 TAAAAAATAAAAATAAA
1 TAAAAAATAAAAATAAA
*
58899799 CAGAAAAATAAAAATAGAA
1 TA-AAAAATAAAAATA-AA
*
58899818 TAAAATATAAAAATGAAA
1 TAAAAAATAAAAAT-AAA
*
58899836 -AATAAAA-GAAAATAAA
1 TAA-AAAATAAAAATAAA
58899852 TTAAAA
1 -TAAAA
58899858 TAGACTCAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
16 3 0.06
17 10 0.21
18 31 0.65
19 4 0.08
ACGTcount: A:0.76, C:0.01, G:0.05, T:0.17
Consensus pattern (17 bp):
TAAAAAATAAAAATAAA
Found at i:58899847 original size:25 final size:23
Alignment explanation
Indices: 58899784--58899849 Score: 69
Period size: 24 Copynumber: 2.7 Consensus size: 23
58899774 AAGAAGTCTA
*
58899784 AAAAATAAAAATAAACAGAAAAAT
1 AAAAATAAAAA-AAATAGAAAAAT
* *
58899808 AAAAATAGAATAAAATATAAAAAT
1 AAAAATA-AAAAAAATAGAAAAAT
58899832 GAAAAATAAAAGAAAATA
1 -AAAAATAAAA-AAAATA
58899850 AATTAAAATA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
24 19 0.54
25 16 0.46
ACGTcount: A:0.77, C:0.02, G:0.06, T:0.15
Consensus pattern (23 bp):
AAAAATAAAAAAAATAGAAAAAT
Found at i:58901507 original size:15 final size:15
Alignment explanation
Indices: 58901463--58901508 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
58901453 AATTACAATA
*
58901463 AATAAATAATTGAACT
1 AATAAATAATT-AATT
58901479 AA-AAATAATT-ATT
1 AATAAATAATTAATT
*
58901492 AATAAAGAATTAATT
1 AATAAATAATTAATT
58901507 AA
1 AA
58901509 AGAAAAAGGT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
13 4 0.15
14 7 0.27
15 13 0.50
16 2 0.08
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (15 bp):
AATAAATAATTAATT
Found at i:58901515 original size:32 final size:31
Alignment explanation
Indices: 58901434--58901515 Score: 74
Period size: 32 Copynumber: 2.5 Consensus size: 31
58901424 ATAAAAGAAC
* *
58901434 AATTGATTAAAAAAATAATAATTACAATAAAT
1 AATTAATTAAAAAAA-AATAATTACAATAAAG
* ** *
58901466 AAATAATTGAACTAAAAATAATTATTAATAAAG
1 AATTAATT-AAAAAAAAATAATTA-CAATAAAG
*
58901499 AATTAATTAAAGAAAAA
1 AATTAATTAAAAAAAAA
58901516 GGTAGAGTAA
Statistics
Matches: 39, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
32 21 0.54
33 18 0.46
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.29
Consensus pattern (31 bp):
AATTAATTAAAAAAAAATAATTACAATAAAG
Found at i:58908890 original size:47 final size:47
Alignment explanation
Indices: 58908769--58908944 Score: 237
Period size: 47 Copynumber: 3.7 Consensus size: 47
58908759 GATATGTGAG
* * * * *
58908769 AGCTAGTGTAAGACCATGTCTGGGACATGGCGTTGGCCTCGATTTTGA-T
1 AGCTAGTGTAAGACCATGTCTGGGACATGGC-ATCGACTTGA--TGGATT
*
58908818 AGTTAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATT
1 AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATT
*
58908865 AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATG
1 AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATT
* *
58908912 AGCCAGTGTAAGACCATGTTTGGGACATGGCAT
1 AGCTAGTGTAAGACCATGTCTGGGACATGGCAT
58908945 TGGCATTGTA
Statistics
Matches: 116, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
46 3 0.03
47 77 0.66
48 6 0.05
49 30 0.26
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (47 bp):
AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATT
Found at i:58913624 original size:46 final size:46
Alignment explanation
Indices: 58913494--58913655 Score: 152
Period size: 46 Copynumber: 3.5 Consensus size: 46
58913484 TGTGTGTGCT
** *
58913494 AGTGTAAGACATGTCTGGGACATGCATCGGC-CACATTATGAAATGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTCTGA-GATGAAA-GCC
* * * * * *
58913541 AGTGAAAGTCATATCTGGGACATACATCGACAT-TGAGACGAAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGC-TCTGAGATGAAAGCC
* *
58913587 AGTGTAAGACATGTCTGGGACATGCATCGGCTCTGAGATG--TGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTCTGAGATGAAAGCC
*
58913631 AGTGTAAGACCATGTCTAGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
58913656 GTATCGGCAC
Statistics
Matches: 93, Mismatches: 18, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
44 11 0.12
45 15 0.16
46 35 0.38
47 31 0.33
48 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTCTGAGATGAAAGCC
Found at i:58917521 original size:79 final size:81
Alignment explanation
Indices: 58917385--58917569 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
58917375 TTGAATGATG
*
58917385 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
58917449 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
58917464 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
58917526 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
58917544 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
58917570 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:58917583 original size:40 final size:40
Alignment explanation
Indices: 58917386--58917569 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
58917376 TGAATGATGT
* * * *
58917386 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
58917426 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
58917466 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
58917504 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
58917545 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
58917570 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:58917591 original size:79 final size:79
Alignment explanation
Indices: 58917438--58917602 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
58917428 GGACTAAGAT
* **
58917438 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
58917503 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
58917517 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
58917580 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
58917596 CCGAAGG
1 CCGAAGG
58917603 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:58925600 original size:79 final size:81
Alignment explanation
Indices: 58925464--58925648 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
58925454 TTGAATGATG
*
58925464 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
58925528 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
58925543 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
58925605 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
58925623 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
58925649 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:58925662 original size:40 final size:40
Alignment explanation
Indices: 58925465--58925648 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
58925455 TGAATGATGT
* * * *
58925465 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
58925505 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
58925545 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
58925583 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
58925624 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
58925649 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:58925670 original size:79 final size:79
Alignment explanation
Indices: 58925517--58925681 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
58925507 GGACTAAGAT
* **
58925517 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
58925582 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
58925596 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
58925659 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
58925675 CCGAAGG
1 CCGAAGG
58925682 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:58930011 original size:18 final size:18
Alignment explanation
Indices: 58929984--58930024 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
58929974 GTTCTGGACG
58929984 CGGGCCTGTCCCAGCACA
1 CGGGCCTGTCCCAGCACA
*
58930002 CGGGCGTGTCCCAGCACA
1 CGGGCCTGTCCCAGCACA
58930020 CGGGC
1 CGGGC
58930025 ATGTGCTCTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.15, C:0.41, G:0.34, T:0.10
Consensus pattern (18 bp):
CGGGCCTGTCCCAGCACA
Found at i:58931014 original size:46 final size:47
Alignment explanation
Indices: 58930943--58931202 Score: 215
Period size: 46 Copynumber: 5.6 Consensus size: 47
58930933 GTGCGCCAGA
* *
58930943 GTAAGACATGTCTGGGACATGCATCGGCCACATTGCGA-A-AGCAAGT
1 GTAAGACATGTCTGGGACATGCATCGGCC-CATTGAGATAGAGCTAGT
* *
58930989 GTAGGACATGTCTGGGACATGCATCGG--CTTTGAGATGAGAGCTAGT
1 GTAAGACATGTCTGGGACATGCATCGGCCCATTGAGAT-AGAGCTAGT
* * *
58931035 GTAAGACATGTCTGGAACATGCATTGG-CC-TTGAGATATGTGTTCTAGT
1 GTAAGACATGTCTGGGACATGCATCGGCCCATTGAGATA-GAG--CTAGT
* *
58931083 GTAAGACATGTCTGGGACATGCATCAGCCACA-TCATGA-A-AGCTAGT
1 GTAAGACATGTCTGGGACATGCATCGGCC-CATTGA-GATAGAGCTAGT
* *
58931129 GTAAGACCATGTCTGGGACATGGCATCGG--C-TTGATAT-GTG-TCAGT
1 GTAAGA-CATGTCTGGGACAT-GCATCGGCCCATTGAGATAGAGCT-AGT
*
58931174 GTAAGACATGTCTAGGACATGGCATCGGC
1 GTAAGACATGTCTGGGACAT-GCATCGGC
58931203 TTGATATGTG
Statistics
Matches: 178, Mismatches: 18, Indels: 37
0.76 0.08 0.16
Matches are distributed among these distances:
43 6 0.03
44 23 0.13
45 15 0.08
46 76 0.43
47 15 0.08
48 36 0.20
49 1 0.01
50 4 0.02
51 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (47 bp):
GTAAGACATGTCTGGGACATGCATCGGCCCATTGAGATAGAGCTAGT
Found at i:58931103 original size:94 final size:92
Alignment explanation
Indices: 58930986--58931204 Score: 266
Period size: 94 Copynumber: 2.4 Consensus size: 92
58930976 TGCGAAAGCA
* ** * *
58930986 AGTGTAGGACATGTCTGGGACATGCATCGGCTTTGA-GATGAGAGCTAGTGTAAGA-CATGTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTTACATCATGAAAGCTAGTGTAAGACCATGTCTG
*
58931049 GAACAT-GCATTGGCCTTGAGATATGTGTTC
66 GAACATGGCATCGG-CTT--GATATGTG-TC
* *
58931079 TAGTGTAAGACATGTCTGGGACATGCATCAGC-CACATCATGAAAGCTAGTGTAAGACCATGTCT
1 -AGTGTAAGACATGTCTGGGACATGCATCGGCTTACATCATGAAAGCTAGTGTAAGACCATGTCT
*
58931143 GGGACATGGCATCGGCTTGATATGTGTC
65 GGAACATGGCATCGGCTTGATATGTGTC
*
58931171 AGTGTAAGACATGTCTAGGACATGGCATCGGCTT
1 AGTGTAAGACATGTCTGGGACAT-GCATCGGCTT
58931205 GATATGTGTC
Statistics
Matches: 108, Mismatches: 12, Indels: 11
0.82 0.09 0.08
Matches are distributed among these distances:
91 22 0.20
92 9 0.08
93 9 0.08
94 46 0.43
95 16 0.15
96 6 0.06
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.27
Consensus pattern (92 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTTACATCATGAAAGCTAGTGTAAGACCATGTCTG
GAACATGGCATCGGCTTGATATGTGTC
Found at i:58931195 original size:44 final size:44
Alignment explanation
Indices: 58930986--58931236 Score: 256
Period size: 44 Copynumber: 5.5 Consensus size: 44
58930976 TGCGAAAGCA
* * * *
58930986 AGTGTAGGACATGTCTGGGACATGCATCGGCTTTGAGATGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGC-TTGATATGTG-TCT
* *
58931032 AGTGTAAGACATGTCTGGAACATGCATTGGCCTTGAGATATGTGTTCT
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CTT--GATATGTG-TCT
* *** *
58931080 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATCATGAAAG-CT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTTGAT-ATG--TGTCT
58931126 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGATATGTGTC-
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTTGATATGTGTCT
*
58931171 AGTGTAAGACATGTCTAGGACATGGCATCGGCTTGATATGTGTC-
1 AGTGTAAGACATGTCTGGGACAT-GCATCGGCTTGATATGTGTCT
*
58931215 AGTGTAAGACCTGTCTGGGACA
1 AGTGTAAGACATGTCTGGGACA
58931237 CGACATGGAC
Statistics
Matches: 174, Mismatches: 22, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
44 54 0.31
45 12 0.07
46 44 0.25
47 19 0.11
48 45 0.26
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.27
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTTGATATGTGTCT
Found at i:58931243 original size:140 final size:139
Alignment explanation
Indices: 58930943--58931236 Score: 388
Period size: 140 Copynumber: 2.1 Consensus size: 139
58930933 GTGCGCCAGA
* ** *
58930943 GTAAGACATGTCTGGGACATGCATCGGCCACATTGCGAAAGCAAGTGTAGGACATGTCTGGGACA
1 GTAAGACATGTCTGGGACATGCATCAGCCACATCACGAAAGCAAGTGTAAGACATGTCTGGGACA
*
58931008 TGCATCGGCTTTGAGATGAGAGCTAGTGTAAGACATGTCTGGAACATGCATTGGCCTTGAGATAT
66 TGCATCGGCTTTGAGATGAGAGCTAGTGTAAGACATGTCTGGAACATGCATCGGCCTT-AGATAT
58931073 GTGTTCTAGT
130 GTGTTCTAGT
* *
58931083 GTAAGACATGTCTGGGACATGCATCAGCCACATCATGAAAGCTAGTGTAAGACCATGTCTGGGAC
1 GTAAGACATGTCTGGGACATGCATCAGCCACATCACGAAAGCAAGTGTAAGA-CATGTCTGGGAC
* * *
58931148 ATGGCATCGGC-TTGATATGTG-TC-AGTGTAAGACATGTCTAGG-ACATGGCATCGG-CTT-GA
65 AT-GCATCGGCTTTGAGATGAGAGCTAGTGTAAGACATGTCT-GGAACAT-GCATCGGCCTTAGA
58931207 TATGTG-TC-AGT
127 TATGTGTTCTAGT
*
58931218 GTAAGACCTGTCTGGGACA
1 GTAAGACATGTCTGGGACA
58931237 CGACATGGAC
Statistics
Matches: 139, Mismatches: 11, Indels: 13
0.85 0.07 0.08
Matches are distributed among these distances:
135 21 0.15
136 2 0.01
137 8 0.06
139 23 0.17
140 55 0.40
141 22 0.16
142 8 0.06
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (139 bp):
GTAAGACATGTCTGGGACATGCATCAGCCACATCACGAAAGCAAGTGTAAGACATGTCTGGGACA
TGCATCGGCTTTGAGATGAGAGCTAGTGTAAGACATGTCTGGAACATGCATCGGCCTTAGATATG
TGTTCTAGT
Found at i:58942103 original size:52 final size:51
Alignment explanation
Indices: 58941993--58942162 Score: 247
Period size: 52 Copynumber: 3.4 Consensus size: 51
58941983 CGATGACTTG
* * * *
58941993 CACATAGTACCACCCTTGT-AGTCAAAGCTACCTTCTTTACAAAGTGGCCTT
1 CACATAGTACCACACTTGTGA-CCAAAGCTATCTTCTTCACAAAGTGGCCTT
58942044 CACATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCACAAAGTGGCCTT
1 CACATAGTACCACACTTGTGACCAAAGCTATC-TTCTTCACAAAGTGGCCTT
* *
58942096 CACATAGTACCACACTTGTGTCC-AAGCTATC-TCTTCTCAAAGTGGCCTT
1 CACATAGTACCACACTTGTGACCAAAGCTATCTTCTTCACAAAGTGGCCTT
58942145 CACATAGTACCACACTTG
1 CACATAGTACCACACTTG
58942163 AGTCACTAGT
Statistics
Matches: 111, Mismatches: 6, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
49 35 0.32
51 35 0.32
52 41 0.37
ACGTcount: A:0.28, C:0.30, G:0.14, T:0.29
Consensus pattern (51 bp):
CACATAGTACCACACTTGTGACCAAAGCTATCTTCTTCACAAAGTGGCCTT
Found at i:58945643 original size:45 final size:45
Alignment explanation
Indices: 58945536--58945636 Score: 143
Period size: 45 Copynumber: 2.2 Consensus size: 45
58945526 TCTGAGCTCG
* *
58945536 TTGAGTTGGTCCAAGTTCGTGATATATGTGAGAAGTCTGAAGTTG
1 TTGAGTTGGTCCAAGTTCGTGATATATGTGAGAAGTCCGAAGTTA
*
58945581 TTGAGTTGGTCCAAGTTCGTGATATATGTGAAGCA-TCCG-AGCTTA
1 TTGAGTTGGTCCAAGTTCGTGATATATGTG-AGAAGTCCGAAG-TTA
58945626 TTGAGTTGGTC
1 TTGAGTTGGTC
58945637 TGAGTTCATT
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
44 2 0.04
45 46 0.90
46 3 0.06
ACGTcount: A:0.23, C:0.12, G:0.30, T:0.36
Consensus pattern (45 bp):
TTGAGTTGGTCCAAGTTCGTGATATATGTGAGAAGTCCGAAGTTA
Found at i:58945674 original size:44 final size:44
Alignment explanation
Indices: 58945612--58945748 Score: 148
Period size: 44 Copynumber: 2.9 Consensus size: 44
58945602 ATATATGTGA
* **
58945612 AGCATCCGAGCTTATTGAGTTGGTCTGAGTTCATTATGGATACG
1 AGCATCTGAGCTCGTTGAGTTGGTCTGAGTTCATTATGGATACG
* * *
58945656 AGCATCTGAGCTCGTTGAGTTGGTCCGAGTTTATTATGGATGCG
1 AGCATCTGAGCTCGTTGAGTTGGTCTGAGTTCATTATGGATACG
58945700 ATGCATGTGACATCCGAGCTCGTTGAGTTGGTCTGAGTTCATTATGGAT
1 A-GCA--T--C-T--GAGCTCGTTGAGTTGGTCTGAGTTCATTATGGAT
58945749 GTATACATGT
Statistics
Matches: 77, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
44 39 0.51
45 3 0.04
47 1 0.01
49 1 0.01
50 1 0.01
52 32 0.42
ACGTcount: A:0.20, C:0.16, G:0.29, T:0.34
Consensus pattern (44 bp):
AGCATCTGAGCTCGTTGAGTTGGTCTGAGTTCATTATGGATACG
Found at i:58949564 original size:19 final size:18
Alignment explanation
Indices: 58949536--58949572 Score: 65
Period size: 19 Copynumber: 2.0 Consensus size: 18
58949526 GGCTAGACAT
58949536 AAAAAGATCATTGTAATC
1 AAAAAGATCATTGTAATC
58949554 AAAATAGATCATTGTAATC
1 AAAA-AGATCATTGTAATC
58949573 TATTCCACCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.49, C:0.11, G:0.11, T:0.30
Consensus pattern (18 bp):
AAAAAGATCATTGTAATC
Found at i:58951856 original size:55 final size:53
Alignment explanation
Indices: 58951795--58952003 Score: 215
Period size: 55 Copynumber: 3.9 Consensus size: 53
58951785 ATTAGGGTTT
* *
58951795 AAGGATACCATGTAGGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGG-CATTGGTAA-GTTTCTAAGGC
* * * * * **
58951850 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATTAGTTACTATAACGTA
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTT--TCTAA-GGC
* *
58951906 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTC-TAAGGC
* * * *
58951958 AAGGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTTT
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTT
58952004 GAAAAGGATA
Statistics
Matches: 125, Mismatches: 23, Indels: 13
0.78 0.14 0.08
Matches are distributed among these distances:
52 6 0.05
53 38 0.30
54 9 0.07
55 67 0.54
56 5 0.04
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.23
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTCTAAGGC
Found at i:58958241 original size:21 final size:21
Alignment explanation
Indices: 58958215--58958262 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
58958205 GGGGTAGACT
*
58958215 AGGCTACATGGGAGCCCGAAG
1 AGGCTACATGAGAGCCCGAAG
58958236 AGGCTACATGAGAGCCCGAAG
1 AGGCTACATGAGAGCCCGAAG
58958257 AGGCTA
1 AGGCTA
58958263 TGCGAAAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.35, T:0.10
Consensus pattern (21 bp):
AGGCTACATGAGAGCCCGAAG
Found at i:58959648 original size:55 final size:54
Alignment explanation
Indices: 58959539--58959747 Score: 217
Period size: 55 Copynumber: 3.9 Consensus size: 54
58959529 CATTAGGGTT
* ** * *
58959539 TAAGGATACCATGTAAGACCATGCCAAGGCATGAAAATTGCTAAGGTT-TCTAAGG
1 TAAGGATACCATGTAAGACCATGCCAAGACATG-GCATTGGTAA-GTTCTATAAGG
* *
58959594 TAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGG
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-CTATAAGG
* * * *
58959649 CAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGG
1 -TAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGG
* * * * *
58959702 CAATGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTT
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT
58959748 TGAAAAGGAT
Statistics
Matches: 130, Mismatches: 20, Indels: 10
0.81 0.12 0.06
Matches are distributed among these distances:
52 3 0.02
53 43 0.33
54 8 0.06
55 72 0.55
56 4 0.03
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.23
Consensus pattern (54 bp):
TAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGG
Found at i:58959746 original size:108 final size:110
Alignment explanation
Indices: 58959547--58959747 Score: 291
Period size: 108 Copynumber: 1.8 Consensus size: 110
58959537 TTTAAGGATA
*
58959547 CCATGTAAGACCATGCCAAGGCATGAAAATTGCTAAGGTTTCTAAGGTAAGGATACCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGAAAATTGCTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
*
58959612 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
** * * *
58959657 CCATGTAAGACCATGCCAAGGCATG-GCATTGGTGA-G-TTCATAAGGCAATGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGAAAATTGCTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
* *
58959719 ACCATGTCGAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
58959748 TGAAAAGGAT
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.58
109 6 0.07
110 25 0.31
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGAAAATTGCTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:58960760 original size:27 final size:27
Alignment explanation
Indices: 58960712--58960870 Score: 175
Period size: 27 Copynumber: 5.9 Consensus size: 27
58960702 GCGAGGCTGC
* *
58960712 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
58960739 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
58960765 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* * *
58960792 CAGATAATTGTGGCATAGCTACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
58960819 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
58960846 CAGATAATTATGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
58960871 GACGCTTCCT
Statistics
Matches: 114, Mismatches: 10, Indels: 16
0.81 0.07 0.11
Matches are distributed among these distances:
26 10 0.09
27 99 0.87
28 5 0.04
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:58960871 original size:54 final size:54
Alignment explanation
Indices: 58960730--58960873 Score: 236
Period size: 54 Copynumber: 2.7 Consensus size: 54
58960720 GTGACGAAGT
* *
58960730 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
*
58960784 CACCAGATCAGATAATTGTGGCATAGCTACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
*
58960838 CACCAGATCAGATAATTATGGCATAGCCACCAGGAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
58960874 GCTTCCTCCA
Statistics
Matches: 84, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
53 5 0.06
54 79 0.94
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
Found at i:58962500 original size:26 final size:26
Alignment explanation
Indices: 58962467--58962574 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
58962457 TGAAATGCCC
* *
58962467 ATCATGGAAGATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
58962493 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
58962519 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
58962545 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
58962571 ATCA
1 ATCA
58962575 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:58965863 original size:51 final size:50
Alignment explanation
Indices: 58965787--58965968 Score: 195
Period size: 51 Copynumber: 3.6 Consensus size: 50
58965777 GGATACCCGA
* * *
58965787 TGACCTGCACGTAGTACCACCCTTGTAGTCAAAGCTACCTTCTTCACAAAG
1 TGACCTTCACATAGTACCACACTTGT-GTCAAAGCTACCTTCTTCACAAAG
* *
58965838 TGACCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCACAAAG
1 TGACCTTCACATAGTACCACACTTGTG-TCAAAGCTA-CCTTCTTCACAAAG
** * * * **
58965890 TGGTCTTCACATAGTACCACACTTGTGACCAAGCTATC-TCTTCTTAAAG
1 TGACCTTCACATAGTACCACACTTGTGTCAAAGCTACCTTCTTCACAAAG
* * *
58965939 TGACTTTCACATAGTACCACATTTGAGTCA
1 TGACCTTCACATAGTACCACACTTGTGTCA
58965969 CTAGTGACTT
Statistics
Matches: 109, Mismatches: 20, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
49 32 0.29
50 1 0.01
51 38 0.35
52 38 0.35
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.30
Consensus pattern (50 bp):
TGACCTTCACATAGTACCACACTTGTGTCAAAGCTACCTTCTTCACAAAG
Found at i:58965901 original size:52 final size:52
Alignment explanation
Indices: 58965798--58965959 Score: 196
Period size: 52 Copynumber: 3.2 Consensus size: 52
58965788 GACCTGCACG
* * *
58965798 TAGTACCACCCTTGT-AGTCAAAGCTA-CCTTCTTCACAAAGT-GACCTTCACA
1 TAGTACCACACTTGTGA-CCAAAGCTATCTTTCTTCACAAAGTGGA-CTTCACA
*
58965849 TAGTACCACACTTGTGACCAAAGCTATCTTTCTTCACAAAGTGGTCTTCACA
1 TAGTACCACACTTGTGACCAAAGCTATCTTTCTTCACAAAGTGGACTTCACA
58965901 TAGTACCACACTTGTGACC-AAGCTATCTCTTCTT---AAAGT-GACTTTCACA
1 TAGTACCACACTTGTGACCAAAGCTATCT-TTCTTCACAAAGTGGAC-TTCACA
58965950 TAGTACCACA
1 TAGTACCACA
58965960 TTTGAGTCAC
Statistics
Matches: 101, Mismatches: 5, Indels: 12
0.86 0.04 0.10
Matches are distributed among these distances:
48 2 0.02
49 21 0.21
51 31 0.31
52 46 0.46
53 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.12, T:0.30
Consensus pattern (52 bp):
TAGTACCACACTTGTGACCAAAGCTATCTTTCTTCACAAAGTGGACTTCACA
Found at i:58965980 original size:34 final size:34
Alignment explanation
Indices: 58965937--58966010 Score: 139
Period size: 34 Copynumber: 2.2 Consensus size: 34
58965927 CTCTTCTTAA
*
58965937 AGTGACTTTCACATAGTACCACATTTGAGTCACT
1 AGTGACTTTCACATAGTACCACACTTGAGTCACT
58965971 AGTGACTTTCACATAGTACCACACTTGAGTCACT
1 AGTGACTTTCACATAGTACCACACTTGAGTCACT
58966005 AGTGAC
1 AGTGAC
58966011 ATGTCACTTA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (34 bp):
AGTGACTTTCACATAGTACCACACTTGAGTCACT
Done.