Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 193 of 356
Found at i:62977511 original size:25 final size:25
Alignment explanation
Indices: 62977427--62977524 Score: 88
Period size: 25 Copynumber: 3.7 Consensus size: 25
62977417 AATCAAAATG
* * *
62977427 AGAATTAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTAAA
*
62977452 AGAATCAGAATCAGAATTAGGTGACAGAA
1 AGAATCAGAATCAGAATCAGGT---A-AA
*
62977481 GTAGAATCAGAATCAGTATCAGGTAAA
1 --AGAATCAGAATCAGAATCAGGTAAA
*
62977508 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
62977525 GTGAATGCAA
Statistics
Matches: 59, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
25 35 0.59
27 2 0.03
28 1 0.02
29 1 0.02
31 20 0.34
ACGTcount: A:0.48, C:0.11, G:0.21, T:0.19
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTAAA
Found at i:62978196 original size:108 final size:108
Alignment explanation
Indices: 62978043--62978245 Score: 336
Period size: 108 Copynumber: 1.9 Consensus size: 108
62978033 TAAAATGGTA
62978043 ATTTTATAAATCGAGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAATAGTAATTCTGTAAAT
1 ATTTTATAAATCGAGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAATAGTAATTCTGTAAAT
* *
62978108 TGAGAGTAAAAC-GATAATTCTATAAATCGAAGATAAAACAGTG
66 CGAGAGTAAAACAG-CAATTCTATAAATCGAAGATAAAACAGTG
* * *
62978151 ATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAAT
1 ATTTTATAAATCGAGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAATAGTAATTCTGTAAAT
*
62978216 CGAGGGTAAAACAGCAATTCTATAAATCGA
66 CGAGAGTAAAACAGCAATTCTATAAATCGA
62978246 GGGTACTTTG
Statistics
Matches: 88, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
108 87 0.99
109 1 0.01
ACGTcount: A:0.43, C:0.08, G:0.19, T:0.30
Consensus pattern (108 bp):
ATTTTATAAATCGAGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAATAGTAATTCTGTAAAT
CGAGAGTAAAACAGCAATTCTATAAATCGAAGATAAAACAGTG
Found at i:62978261 original size:27 final size:27
Alignment explanation
Indices: 62978031--62978250 Score: 253
Period size: 27 Copynumber: 8.1 Consensus size: 27
62978021 ACATCCTAGC
* * *
62978031 GGTAAAATGGTAATTTTATAAATCGAG
1 GGTAAAATAGTAATTCTGTAAATCGAG
* * *
62978058 GGTAAAATGGTAATTCTATAAATCAAG
1 GGTAAAATAGTAATTCTGTAAATCGAG
*
62978085 GGTAAAATAGTAATTCTGTAAATTGAG
1 GGTAAAATAGTAATTCTGTAAATCGAG
* * * *
62978112 AGTAAAA-CGATAATTCTATAAATCGAA
1 GGTAAAATAG-TAATTCTGTAAATCGAG
* * * *
62978139 GATAAAACAGTGATTTTGTAAATCGAG
1 GGTAAAATAGTAATTCTGTAAATCGAG
*
62978166 GGTAAAATGGTAATTCTGTAAATCGAG
1 GGTAAAATAGTAATTCTGTAAATCGAG
62978193 GGTAAAATAGTAATTCTGTAAATCGAG
1 GGTAAAATAGTAATTCTGTAAATCGAG
* * *
62978220 GGTAAAACAGCAATTCTATAAATCGAG
1 GGTAAAATAGTAATTCTGTAAATCGAG
62978247 GGTA
1 GGTA
62978251 CTTTGGTAAT
Statistics
Matches: 164, Mismatches: 27, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 1 0.01
27 162 0.99
28 1 0.01
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.29
Consensus pattern (27 bp):
GGTAAAATAGTAATTCTGTAAATCGAG
Found at i:62978261 original size:54 final size:54
Alignment explanation
Indices: 62978031--62978250 Score: 287
Period size: 54 Copynumber: 4.1 Consensus size: 54
62978021 ACATCCTAGC
* * * * *
62978031 GGTAAAATGGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTATAAATCAAG
1 GGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAG
* * * *
62978085 GGTAAAATAGTAATTCTGTAAATTGAGAGTAAAACGATAATTCTATAAATCGAA
1 GGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAG
* * * * * *
62978139 GATAAAACAGTGATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAG
1 GGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAG
* *
62978193 GGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACAGCAATTCTATAAATCGAG
1 GGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAG
62978247 GGTA
1 GGTA
62978251 CTTTGGTAAT
Statistics
Matches: 139, Mismatches: 27, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 139 1.00
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.29
Consensus pattern (54 bp):
GGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAG
Found at i:62978261 original size:81 final size:81
Alignment explanation
Indices: 62978031--62978250 Score: 280
Period size: 81 Copynumber: 2.7 Consensus size: 81
62978021 ACATCCTAGC
* * ** * *
62978031 GGTAAAATGGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAATAGT
1 GGTAAAATAGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATGGT
*
62978096 AATTCTGTAAATTGAG
66 AATTCTGTAAATCGAG
* * * * * * *
62978112 AGTAAAA-CGATAATTCTATAAATCGAAGATAAAACAGTGATTTTGTAAATCGAGGGTAAAATGG
1 GGTAAAATAG-TAATTCTATAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATGG
62978176 TAATTCTGTAAATCGAG
65 TAATTCTGTAAATCGAG
* *
62978193 GGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACAGCAATTCTATAAATCGAGGGTA
1 GGTAAAATAGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTA
62978251 CTTTGGTAAT
Statistics
Matches: 115, Mismatches: 22, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
80 1 0.01
81 113 0.98
82 1 0.01
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.29
Consensus pattern (81 bp):
GGTAAAATAGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATGGT
AATTCTGTAAATCGAG
Found at i:62979752 original size:58 final size:59
Alignment explanation
Indices: 62979662--62979818 Score: 146
Period size: 57 Copynumber: 2.7 Consensus size: 59
62979652 TATTGACCAT
* * * * * *
62979662 GTTATAGAAAGGATTTAGCC-CGAATGGGTAATCCTAATATAATACCTC-TC-GAGTATAC
1 GTTATATAAAAGATTTAGCCTGGACT-GGTAATCCTAATAT-AGACCTCTTCTGAGCATAC
* * * *
62979720 GTTATGAT-TAGGGTTTAGCCTGGACTGGTAATCCTAAT-T-GAGCTCTTCTGAGCATAC
1 GTTAT-ATAAAAGATTTAGCCTGGACTGGTAATCCTAATATAGACCTCTTCTGAGCATAC
*
62979777 GTTATATAAAAGATTTAGCCTGGACTGGTAATCCTATTATAG
1 GTTATATAAAAGATTTAGCCTGGACTGGTAATCCTAATATAG
62979819 GATATGTGGC
Statistics
Matches: 80, Mismatches: 12, Indels: 13
0.76 0.11 0.12
Matches are distributed among these distances:
55 4 0.05
56 4 0.05
57 39 0.49
58 28 0.35
59 5 0.06
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (59 bp):
GTTATATAAAAGATTTAGCCTGGACTGGTAATCCTAATATAGACCTCTTCTGAGCATAC
Found at i:62982541 original size:20 final size:19
Alignment explanation
Indices: 62982494--62982556 Score: 60
Period size: 20 Copynumber: 3.4 Consensus size: 19
62982484 ATTGAGGGTC
*
62982494 TTATACATTGAATTG-AA-
1 TTATAAATTGAATTGAAAT
*
62982511 TT-TAAAGTGAATGTGAAAT
1 TTATAAATTGAAT-TGAAAT
*
62982530 TTATAAATTGAATTGAATT
1 TTATAAATTGAATTGAAAT
62982549 ATTATAAA
1 -TTATAAA
62982557 GATCAAGAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
16 8 0.22
17 4 0.11
18 2 0.05
19 7 0.19
20 16 0.43
ACGTcount: A:0.44, C:0.02, G:0.13, T:0.41
Consensus pattern (19 bp):
TTATAAATTGAATTGAAAT
Found at i:62983625 original size:2 final size:2
Alignment explanation
Indices: 62983618--62983670 Score: 81
Period size: 2 Copynumber: 27.0 Consensus size: 2
62983608 ATTGAGCTCG
*
62983618 CT CT CT CT CT CT CT CT CT CT CT CT TT CT CT CT CT C- CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
*
62983659 CT CC CT CT CT CT
1 CT CT CT CT CT CT
62983671 GCTTGTTTGC
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
1 1 0.02
2 45 0.98
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:62987801 original size:28 final size:27
Alignment explanation
Indices: 62987770--62987829 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 27
62987760 TATTTCAAAT
*
62987770 TTAACCACAAAATTTCAACATTTCTCAA
1 TTAAACACAAAATTTCAACA-TTCTCAA
** **
62987798 TTAAATTCCTAATTTCAACATTCTCAA
1 TTAAACACAAAATTTCAACATTCTCAA
62987825 TTAAA
1 TTAAA
62987830 TTCCTAAATG
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
27 12 0.44
28 15 0.56
ACGTcount: A:0.42, C:0.22, G:0.00, T:0.37
Consensus pattern (27 bp):
TTAAACACAAAATTTCAACATTCTCAA
Found at i:62987829 original size:27 final size:28
Alignment explanation
Indices: 62987780--62987836 Score: 107
Period size: 27 Copynumber: 2.1 Consensus size: 28
62987770 TTAACCACAA
62987780 AATTTCAACATTTCTCAATTAAATTCCT
1 AATTTCAACATTTCTCAATTAAATTCCT
62987808 AATTTCAACA-TTCTCAATTAAATTCCT
1 AATTTCAACATTTCTCAATTAAATTCCT
62987835 AA
1 AA
62987837 ATGACAATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 19 0.66
28 10 0.34
ACGTcount: A:0.39, C:0.21, G:0.00, T:0.40
Consensus pattern (28 bp):
AATTTCAACATTTCTCAATTAAATTCCT
Found at i:62990851 original size:28 final size:28
Alignment explanation
Indices: 62990796--62990915 Score: 204
Period size: 28 Copynumber: 4.2 Consensus size: 28
62990786 GTACTAGAAA
62990796 ACCCCTATGTATGCAAAAATTACCATTAT
1 ACCCCTATGTATGC-AAAATTACCATTAT
62990825 ACCCCTATGTATGCAAAATTACCATTAT
1 ACCCCTATGTATGCAAAATTACCATTAT
*
62990853 AGCCCTATGTATGCAAAATTACCATTAT
1 ACCCCTATGTATGCAAAATTACCATTAT
* *
62990881 ACCCCTATGTATGCAAAATAACCTTTAT
1 ACCCCTATGTATGCAAAATTACCATTAT
62990909 ACCCCTA
1 ACCCCTA
62990916 GGGTTAATTT
Statistics
Matches: 87, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
28 73 0.84
29 14 0.16
ACGTcount: A:0.36, C:0.26, G:0.07, T:0.31
Consensus pattern (28 bp):
ACCCCTATGTATGCAAAATTACCATTAT
Found at i:62991080 original size:27 final size:27
Alignment explanation
Indices: 62991021--62991110 Score: 101
Period size: 28 Copynumber: 3.2 Consensus size: 27
62991011 AGGAAGCATC
62991021 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* * *
62991049 TTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
*
62991076 CTGGTGGCACTGCCACAAAATATGTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
62991105 CTGGTG
1 CTGGTG
62991111 ACTCTGTTAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 22 0.42
28 23 0.44
29 7 0.13
ACGTcount: A:0.20, C:0.22, G:0.24, T:0.33
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:62994896 original size:42 final size:42
Alignment explanation
Indices: 62994808--62994945 Score: 111
Period size: 43 Copynumber: 3.2 Consensus size: 42
62994798 CCTTAACGTT
* *
62994808 GTCTTACATAAAATCAGATATCGATGCCATTATCCCAGATAGG
1 GTCTTACACAAAATCAGATATCGATGCCAATATCCCAGATA-G
* *
62994851 GTCTTACACAAAATCATATA-CGATGCCAATGTCCCAAGCAT-G
1 GTCTTACACAAAATCAGATATCGATGCCAATATCCC-AG-ATAG
*** * * *
62994893 GTCTTACATGTGAATCACGA-ATCAATGCCAATGTCCCAGACATG
1 GTCTTACA-CAAAATCA-GATATCGATGCCAATATCCCAGATA-G
62994937 GTCTTACAC
1 GTCTTACAC
62994946 GATAACACAT
Statistics
Matches: 77, Mismatches: 11, Indels: 14
0.75 0.11 0.14
Matches are distributed among these distances:
42 23 0.30
43 28 0.36
44 26 0.34
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (42 bp):
GTCTTACACAAAATCAGATATCGATGCCAATATCCCAGATAG
Found at i:62996265 original size:25 final size:25
Alignment explanation
Indices: 62996195--62996267 Score: 71
Period size: 25 Copynumber: 2.9 Consensus size: 25
62996185 GGCTGTTACA
*
62996195 GAATTACAGCTTGTGA-GAGCATACC
1 GAATTACAGCTCGT-ATGAGCATACC
*
62996220 -AATCTATAGCTCG-AGTGAGCATACC
1 GAAT-TACAGCTCGTA-TGAGCATACC
*
62996245 GAATTACAGCTCGTATAAGCATA
1 GAATTACAGCTCGTATGAGCATA
62996268 TCTATATATG
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
23 1 0.03
24 3 0.08
25 31 0.79
26 4 0.10
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.25
Consensus pattern (25 bp):
GAATTACAGCTCGTATGAGCATACC
Found at i:62997551 original size:6 final size:6
Alignment explanation
Indices: 62997540--62997656 Score: 96
Period size: 6 Copynumber: 18.8 Consensus size: 6
62997530 TATCAAAACT
* *
62997540 AGAATC AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * *
62997589 AGAATC AGTATC AGGTAA-C AGAATC AAAATC AGAATC AGTATC AGGTAA-C
1 AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC AGAATC A-G-AATC
*
62997639 AGAATC AAAAATC AGAAT
1 AGAATC -AGAATC AGAAT
62997657 GTGAATGCAA
Statistics
Matches: 89, Mismatches: 12, Indels: 20
0.74 0.10 0.17
Matches are distributed among these distances:
5 5 0.06
6 68 0.76
7 13 0.15
8 3 0.03
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:62997552 original size:18 final size:18
Alignment explanation
Indices: 62997542--62997632 Score: 69
Period size: 19 Copynumber: 4.9 Consensus size: 18
62997532 TCAAAACTAG
*
62997542 AATCAGAATCAGAATCAG
1 AATCAGAATCAGAATCAA
* * *
62997560 AATCAGAATTAG-GTGACAG
1 AATCAGAATCAGAAT--CAA
*
62997579 AATCAGAATCAGAATCAG
1 AATCAGAATCAGAATCAA
*
62997597 TATCAGGTAA-CAGAATCAA
1 AATCA-G-AATCAGAATCAA
*
62997616 AATCAGAATCAGTATCA
1 AATCAGAATCAGAATCA
62997633 GGTAACAGAA
Statistics
Matches: 59, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
17 3 0.05
18 26 0.44
19 27 0.46
20 3 0.05
ACGTcount: A:0.47, C:0.15, G:0.18, T:0.20
Consensus pattern (18 bp):
AATCAGAATCAGAATCAA
Found at i:62997583 original size:31 final size:31
Alignment explanation
Indices: 62997545--62997656 Score: 170
Period size: 31 Copynumber: 3.6 Consensus size: 31
62997535 AAACTAGAAT
* * * *
62997545 CAGAATCAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
*
62997576 CAGAATCAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
62997607 CAGAATCAAAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
62997638 CAGAATCAAAAATCAGAAT
1 CAGAATC-AAAATCAGAAT
62997657 GTGAATGCAA
Statistics
Matches: 76, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
31 65 0.86
32 11 0.14
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (31 bp):
CAGAATCAAAATCAGAATCAGTATCAGGTAA
Found at i:62997612 original size:19 final size:19
Alignment explanation
Indices: 62997588--62997645 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
62997578 GAATCAGAAT
62997588 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
*
62997607 CAGAATCA--A--A---AT
1 CAGAATCAGTATCAGGTAA
62997619 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
62997638 CAGAATCA
1 CAGAATCA
62997646 AAAATCAGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 9 0.30
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
19 17 0.57
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (19 bp):
CAGAATCAGTATCAGGTAA
Found at i:62997835 original size:27 final size:26
Alignment explanation
Indices: 62997796--62997894 Score: 117
Period size: 27 Copynumber: 3.7 Consensus size: 26
62997786 CAGTTATCAA
* *
62997796 ATATTGTGACAGAGTCACCAGATACAG
1 ATATTGTGGCAGAGCCACCAGA-ACAG
*
62997823 ATATTCTGGCAGAGCCACCAGAACAG
1 ATATTGTGGCAGAGCCACCAGAACAG
*
62997849 ATATTTGTGGCATAGCCACCAGAAACAG
1 ATA-TTGTGGCAGAGCCACCAG-AACAG
* *
62997877 ATAATGTGGCAAAGCCAC
1 ATATTGTGGCAGAGCCAC
62997895 TTAACAGAAT
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
26 7 0.11
27 48 0.76
28 8 0.13
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
ATATTGTGGCAGAGCCACCAGAACAG
Found at i:62998611 original size:27 final size:27
Alignment explanation
Indices: 62998545--62998812 Score: 281
Period size: 27 Copynumber: 9.9 Consensus size: 27
62998535 GGGCAAAATG
* * * * *
62998545 GTAATTTTACCCCACA-AGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * * * *
62998571 GTAATTCCATCCTACAGTGTTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
62998598 GTAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
62998625 GTAAATCTACCCTACAGGGGTATTGC-
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
62998651 GATAATTCTACCCTATAGGGG-ATTTCG
1 G-TAATTCTACCCTACAGGGGTATTTCA
* *
62998678 GTAATTCTACCCTACAAGGGTGTATTCCG
1 GTAATTCTACCCTAC-AGGG-GTATTTCA
*
62998707 GTAATTCTACCCTACAGGGGTATTTCT
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
62998734 GTAATTCTACCTTACAGGGGTATTCCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
62998761 GTAATTCTACCCTATAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
62998788 GTAATTCTACCCTACAAGGGTATTT
1 GTAATTCTACCCTACAGGGGTATTT
62998813 TGTAATTTGT
Statistics
Matches: 204, Mismatches: 32, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
26 30 0.15
27 149 0.73
28 5 0.02
29 20 0.10
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:62998744 original size:109 final size:110
Alignment explanation
Indices: 62998598--62998808 Score: 356
Period size: 109 Copynumber: 1.9 Consensus size: 110
62998588 TGTTATTTTA
*
62998598 GTAATTCTACCCTACAGGGGTATTTTAGTAAATCTACCCTACAGGGGTATTGC-GATAATTCTAC
1 GTAATTCTACCCTACAGGGGTATTTTAGTAAATCTACCCTACAGGGGTATTCCAG-TAATTCTAC
62998662 CCTATAGGGG-ATTTCGGTAATTCTACCCTACAAGGGTGTATTCCG
65 CCTATAGGGGTATTTCGGTAATTCTACCCTACAAGGGTGTATTCCG
* *
62998707 GTAATTCTACCCTACAGGGGTATTTCT-GTAATTCTACCTTACAGGGGTATTCCAGTAATTCTAC
1 GTAATTCTACCCTACAGGGGTATTT-TAGTAAATCTACCCTACAGGGGTATTCCAGTAATTCTAC
62998771 CCTATAGGGGTATTTCGGTAATTCTACCCTACAAGGGT
65 CCTATAGGGGTATTTCGGTAATTCTACCCTACAAGGGT
62998809 ATTTTGTAAT
Statistics
Matches: 96, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
109 67 0.70
110 29 0.30
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.33
Consensus pattern (110 bp):
GTAATTCTACCCTACAGGGGTATTTTAGTAAATCTACCCTACAGGGGTATTCCAGTAATTCTACC
CTATAGGGGTATTTCGGTAATTCTACCCTACAAGGGTGTATTCCG
Found at i:62998826 original size:14 final size:15
Alignment explanation
Indices: 62998807--62998835 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
62998797 CCCTACAAGG
62998807 GTATTTT-GTAATTT
1 GTATTTTGGTAATTT
62998821 GTATTTTGGTAATTT
1 GTATTTTGGTAATTT
62998836 TACAAACCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.21, C:0.00, G:0.17, T:0.62
Consensus pattern (15 bp):
GTATTTTGGTAATTT
Found at i:62998931 original size:27 final size:27
Alignment explanation
Indices: 62998821--62999294 Score: 203
Period size: 27 Copynumber: 17.6 Consensus size: 27
62998811 TTTGTAATTT
** *
62998821 GTATTTTGGTAATTTTACAAA-CCAGGG
1 GTATTTTGGTAATTTTGTAAATCGA-GG
* *
62998848 GTATTTTGGTAATTTTTTTAATCGAGG
1 GTATTTTGGTAATTTTGTAAATCGAGG
* * *
62998875 GTATTTTGGTAATTTTGTAAACCAAAG
1 GTATTTTGGTAATTTTGTAAATCGAGG
**
62998902 GTATTTCAGTAATTTTGTAAATCGAGG
1 GTATTTTGGTAATTTTGTAAATCGAGG
*** ***
62998929 GTAAAATGGTAATTCAATAAATCGAGG
1 GTATTTTGGTAATTTTGTAAATCGAGG
***
62998956 GTAAAATGGTAATTTTGTAAATCGAGG
1 GTATTTTGGTAATTTTGTAAATCGAGG
*** ** *
62998983 GTAAAATGGTAATTCAGTAAATTGAGG
1 GTATTTTGGTAATTTTGTAAATCGAGG
*** * * * *
62999010 GTAAAATGGTAATTCTATAAATTGAAG
1 GTATTTTGGTAATTTTGTAAATCGAGG
*** *
62999037 GTAAAATGGTAATTCTGTAAATCGAGG
1 GTATTTTGGTAATTTTGTAAATCGAGG
*** * *
62999064 GTAAAATGGTAATTCTATCT-TA-C-AGG
1 GTATTTTGGTAATT-T-TGTAAATCGAGG
* ** *
62999090 AGTATTTTAGTAATTTTACAAATCAAGG
1 -GTATTTTGGTAATTTTGTAAATCGAGG
** ** **
62999118 GTATTTCAGTAATTTTACAGGTCGAGG
1 GTATTTTGGTAATTTTGTAAATCGAGG
*** *
62999145 GTATTTCAATAATTTT-TCAAA-CTATGG
1 GTATTTTGGTAATTTTGT-AAATCGA-GG
* **
62999172 GTATTTCGGTAATTTTACAAATC-AGGG
1 GTATTTTGGTAATTTTGTAAATCGA-GG
** * *
62999199 GTATTTTCATAATTTTATAAA-CAAGG
1 GTATTTTGGTAATTTTGTAAATCGAGG
* * *
62999225 GTATTATGGTAATTTTATAAA-CCAGGG
1 GTATTTTGGTAATTTTGTAAATCGA-GG
*
62999252 GTATTTTGGTAATTTTGTAAA-CTAAGG
1 GTATTTTGGTAATTTTGTAAATC-GAGG
62999279 GTATTTTGGTAATTTT
1 GTATTTTGGTAATTTT
62999295 ACAAACAAGG
Statistics
Matches: 365, Mismatches: 68, Indels: 28
0.79 0.15 0.06
Matches are distributed among these distances:
25 1 0.00
26 30 0.08
27 324 0.89
28 8 0.02
29 2 0.01
ACGTcount: A:0.34, C:0.07, G:0.21, T:0.38
Consensus pattern (27 bp):
GTATTTTGGTAATTTTGTAAATCGAGG
Found at i:62998995 original size:81 final size:81
Alignment explanation
Indices: 62998918--62999078 Score: 277
Period size: 81 Copynumber: 2.0 Consensus size: 81
62998908 CAGTAATTTT
* *
62998918 GTAAATCGAGGGTAAAATGGTAATTCAATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGG
1 GTAAATCGAGGGTAAAATGGTAATTCAATAAATCGAAGGTAAAATGGTAATTCTGTAAATCGAGG
62998983 GTAAAATGGTAATTCA
66 GTAAAATGGTAATTCA
* * *
62998999 GTAAATTGAGGGTAAAATGGTAATTCTATAAATTGAAGGTAAAATGGTAATTCTGTAAATCGAGG
1 GTAAATCGAGGGTAAAATGGTAATTCAATAAATCGAAGGTAAAATGGTAATTCTGTAAATCGAGG
62999064 GTAAAATGGTAATTC
66 GTAAAATGGTAATTC
62999079 TATCTTACAG
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
81 75 1.00
ACGTcount: A:0.40, C:0.06, G:0.24, T:0.30
Consensus pattern (81 bp):
GTAAATCGAGGGTAAAATGGTAATTCAATAAATCGAAGGTAAAATGGTAATTCTGTAAATCGAGG
GTAAAATGGTAATTCA
Found at i:62998997 original size:54 final size:54
Alignment explanation
Indices: 62998910--62999077 Score: 273
Period size: 54 Copynumber: 3.1 Consensus size: 54
62998900 AGGTATTTCA
*
62998910 GTAATTTTGTAAATCGAGGGTAAAATGGTAATTCAATAAATCGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAATGGTAATTCAGTAAATCGAGGGTAAAATG
*
62998964 GTAATTTTGTAAATCGAGGGTAAAATGGTAATTCAGTAAATTGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAATGGTAATTCAGTAAATCGAGGGTAAAATG
* * * * *
62999018 GTAATTCTATAAATTGAAGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAATGGTAATTCAGTAAATCGAGGGTAAAATG
62999072 GTAATT
1 GTAATT
62999078 CTATCTTACA
Statistics
Matches: 106, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 106 1.00
ACGTcount: A:0.40, C:0.05, G:0.24, T:0.32
Consensus pattern (54 bp):
GTAATTTTGTAAATCGAGGGTAAAATGGTAATTCAGTAAATCGAGGGTAAAATG
Found at i:62999267 original size:80 final size:80
Alignment explanation
Indices: 62999086--62999305 Score: 223
Period size: 80 Copynumber: 2.7 Consensus size: 80
62999076 TTCTATCTTA
* * ** *
62999086 CAGGAGTATTTTAGTAATTTTACAAATCAAGGGTA-TTTCAGTAATTTTACAGGTCGAGGGTATT
1 CAGGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTCA-TAATTTTACA-AACAAGGGTATT
62999150 TCAATAATTTTTCAAAC
64 TCAATAATTTTTCAAAC
* * * * *
62999167 TATGGGTATTTCGGTAATTTTACAAATCAGGGGTATTTTCATAATTTTATAAACAAGGGTATTAT
1 CAGGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTCATAATTTTACAAACAAGGGTATT-T
**
62999232 -GGTAATTTTAT-AAAC
65 CAATAATTTT-TCAAAC
** **
62999247 CAGGGGTATTTTGGTAATTTTGTAAA-CTAAGGGTATTTTGGTAATTTTACAAACAAGGG
1 CAGGGGTATTTTGGTAATTTTACAAATC-AAGGGTATTTTCATAATTTTACAAACAAGGG
62999306 GTTTTTTGGT
Statistics
Matches: 114, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 1 0.01
80 68 0.60
81 40 0.35
82 5 0.04
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.39
Consensus pattern (80 bp):
CAGGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTCATAATTTTACAAACAAGGGTATTTC
AATAATTTTTCAAAC
Found at i:62999313 original size:54 final size:53
Alignment explanation
Indices: 62999154--62999330 Score: 214
Period size: 54 Copynumber: 3.3 Consensus size: 53
62999144 GGTATTTCAA
* * **
62999154 TAATTTT-TCAAACTATGGGTATTTCGGTAATTTTACAAATCAGGGGTATTTTCA
1 TAATTTTGT-AAACTAAGGGTATTTTGGTAATTTTACAAA-CAGGGGTATTTTGG
* * *
62999208 TAATTTTATAAAC-AAGGGTATTATGGTAATTTTATAAACCAGGGGTATTTTGG
1 TAATTTTGTAAACTAAGGGTATTTTGGTAATTTTACAAA-CAGGGGTATTTTGG
*
62999261 TAATTTTGTAAACTAAGGGTATTTTGGTAATTTTACAAACAAGGGGTTTTTTGG
1 TAATTTTGTAAACTAAGGGTATTTTGGTAATTTTACAAAC-AGGGGTATTTTGG
* *
62999315 TGATTTGGTAAACTAA
1 TAATTTTGTAAACTAA
62999331 AGTATTCTAA
Statistics
Matches: 107, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
53 46 0.43
54 60 0.56
55 1 0.01
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.41
Consensus pattern (53 bp):
TAATTTTGTAAACTAAGGGTATTTTGGTAATTTTACAAACAGGGGTATTTTGG
Found at i:62999327 original size:27 final size:26
Alignment explanation
Indices: 62999091--62999320 Score: 174
Period size: 27 Copynumber: 8.6 Consensus size: 26
62999081 TCTTACAGGA
* *
62999091 GTATTTTAGTAATTTTACAAATCAAGG
1 GTATTTTGGTAATTTTATAAA-CAAGG
** * ** *
62999118 GTATTTCAGTAATTTTACAGGTCGAGG
1 GTATTTTGGTAATTTTATA-AACAAGG
*** *
62999145 GTATTTCAATAATTTT-TCAAACTATGG
1 GTATTTTGGTAATTTTAT-AAAC-AAGG
* * *
62999172 GTATTTCGGTAATTTTACAAATCAGGG
1 GTATTTTGGTAATTTTATAAA-CAAGG
**
62999199 GTATTTTCATAATTTTATAAACAAGG
1 GTATTTTGGTAATTTTATAAACAAGG
* *
62999225 GTATTATGGTAATTTTATAAACCAGGG
1 GTATTTTGGTAATTTTATAAA-CAAGG
*
62999252 GTATTTTGGTAATTTTGTAAACTAAGG
1 GTATTTTGGTAATTTTATAAAC-AAGG
*
62999279 GTATTTTGGTAATTTTACAAACAAGGG
1 GTATTTTGGTAATTTTATAAACAA-GG
* *
62999306 GTTTTTTGGTGATTT
1 GTATTTTGGTAATTT
62999321 GGTAAACTAA
Statistics
Matches: 165, Mismatches: 30, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
26 26 0.16
27 138 0.84
28 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.42
Consensus pattern (26 bp):
GTATTTTGGTAATTTTATAAACAAGG
Found at i:63001106 original size:12 final size:12
Alignment explanation
Indices: 63001089--63001113 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
63001079 CTTGGTTTCA
63001089 ATATGTTTATTG
1 ATATGTTTATTG
63001101 ATATGTTTATTG
1 ATATGTTTATTG
63001113 A
1 A
63001114 AATGATATGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.00, G:0.16, T:0.56
Consensus pattern (12 bp):
ATATGTTTATTG
Found at i:63006337 original size:28 final size:28
Alignment explanation
Indices: 63006297--63006361 Score: 105
Period size: 28 Copynumber: 2.3 Consensus size: 28
63006287 ATGTACTAGA
*
63006297 ATACCCCTATGTATGCAAAATTACCAT-T
1 ATACCCCTATGTATGCAAAATGACC-TCT
63006325 ATACCCCTATGTATGCAAAATGACCTCT
1 ATACCCCTATGTATGCAAAATGACCTCT
63006353 ATACCCCTA
1 ATACCCCTA
63006362 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 34 0.97
ACGTcount: A:0.34, C:0.29, G:0.08, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCTCT
Found at i:63006525 original size:27 final size:27
Alignment explanation
Indices: 63006467--63006548 Score: 105
Period size: 28 Copynumber: 3.0 Consensus size: 27
63006457 AGGAAGCGTC
63006467 CTGGTGG-CTATGCCACAAATTATCTGTT
1 CTGGTGGCCT-TGCCACAAA-TATCTGTT
*
63006495 CTGGTGGCCTTGCCACATATATCTGTT
1 CTGGTGGCCTTGCCACAAATATCTGTT
63006522 CTGGTGGCAC-TGCCACAAAATATCTGT
1 CTGGTGGC-CTTGCCAC-AAATATCTGT
63006549 ATTTGGTGAC
Statistics
Matches: 49, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
27 22 0.45
28 25 0.51
29 2 0.04
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.33
Consensus pattern (27 bp):
CTGGTGGCCTTGCCACAAATATCTGTT
Found at i:63006567 original size:29 final size:28
Alignment explanation
Indices: 63006477--63006567 Score: 87
Period size: 27 Copynumber: 3.2 Consensus size: 28
63006467 CTGGTGGCTA
* *
63006477 TGCCACAAATTATCTGTTCTGGTGGC-C
1 TGCCACAAAATATCTGTTCTGGTGACAC
* *
63006504 TTGCCAC-ATATATCTGTTCTGGTGGCAC
1 -TGCCACAAAATATCTGTTCTGGTGACAC
* *
63006532 TGCCACAAAATATCTGTATTTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
63006561 TGTCACA
1 TGCCACA
63006568 TTTTCTGTAT
Statistics
Matches: 53, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
27 23 0.43
28 16 0.30
29 14 0.26
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.34
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:63006575 original size:55 final size:56
Alignment explanation
Indices: 63006467--63006581 Score: 130
Period size: 55 Copynumber: 2.1 Consensus size: 56
63006457 AGGAAGCGTC
* *
63006467 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCTTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCTTGCCACATATATCTGTAT
* * *
63006522 CTGGTGGC-ACTGCCACAAAATATCTGTATTTGGTGA-CTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCT-TGCCACATATATCTGTAT
63006578 CTGG
1 CTGG
63006582 CAGCCATGAT
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
54 1 0.02
55 32 0.63
56 18 0.35
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.37
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCTTGCCACATATATCTGTAT
Found at i:63007679 original size:11 final size:10
Alignment explanation
Indices: 63007651--63007684 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
63007641 AGCCTGTTAG
63007651 TATTCTGAAT
1 TATTCTGAAT
*
63007661 TTTTCTGAAT
1 TATTCTGAAT
63007671 ATATTCTGAAT
1 -TATTCTGAAT
63007682 TAT
1 TAT
63007685 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:63013016 original size:28 final size:28
Alignment explanation
Indices: 63012976--63013040 Score: 105
Period size: 28 Copynumber: 2.3 Consensus size: 28
63012966 ATGTACTGGA
*
63012976 ATACCCCTATGTATGCAAAATTACCAT-T
1 ATACCCCTATGTATGCAAAATGACC-TCT
63013004 ATACCCCTATGTATGCAAAATGACCTCT
1 ATACCCCTATGTATGCAAAATGACCTCT
63013032 ATACCCCTA
1 ATACCCCTA
63013041 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 34 0.97
ACGTcount: A:0.34, C:0.29, G:0.08, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCTCT
Found at i:63013204 original size:27 final size:27
Alignment explanation
Indices: 63013156--63013235 Score: 115
Period size: 27 Copynumber: 2.9 Consensus size: 27
63013146 CTAGTGGCTA
*
63013156 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAA-TATCTGTTCTGGTGGCAC
*
63013184 TGCCACATATATCTGTTCTGGTGGCAC
1 TGCCACAAATATCTGTTCTGGTGGCAC
63013211 TGCCACAAAATATCTGTATCTGGTG
1 TGCCAC-AAATATCTGT-TCTGGTG
63013236 ACTCTGTCAC
Statistics
Matches: 47, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
27 23 0.49
28 17 0.36
29 7 0.15
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (27 bp):
TGCCACAAATATCTGTTCTGGTGGCAC
Found at i:63013254 original size:55 final size:56
Alignment explanation
Indices: 63013156--63013260 Score: 142
Period size: 55 Copynumber: 1.9 Consensus size: 56
63013146 CTAGTGGCTA
* *
63013156 TGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-TCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTATCTGGTGGCAC
* * *
63013211 TGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTATCTGG
1 TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTATCTGG
63013261 CAGCCATGCT
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
55 22 0.51
56 21 0.49
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (56 bp):
TGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTATCTGGTGGCAC
Found at i:63014240 original size:27 final size:27
Alignment explanation
Indices: 63014225--63014368 Score: 207
Period size: 27 Copynumber: 5.3 Consensus size: 27
63014215 TAGCATTATT
*
63014225 GAAATACCCCTGTAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
63014252 GAAATACCCCTATAAGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
63014279 GAAATACCCCTATAAGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
63014306 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
63014333 AAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
63014360 GAGATACCC
1 GAAATACCC
63014369 TCGTGGCGTA
Statistics
Matches: 105, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 105 1.00
ACGTcount: A:0.38, C:0.22, G:0.18, T:0.23
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:63015052 original size:27 final size:26
Alignment explanation
Indices: 63015008--63015059 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
63014998 CTCGCTACAA
*
63015008 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
63015035 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
63015060 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:63015130 original size:72 final size:67
Alignment explanation
Indices: 63014989--63015147 Score: 203
Period size: 72 Copynumber: 2.3 Consensus size: 67
63014979 GAGGAAGCGT
* * * *
63014989 TCTGGCAGCCTCGCTACAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACCTAGCCACAA
63015054 TA
66 TA
* *
63015056 TCTGGCAGCCTCGCTGCAATCTGGTGG-CTTGCCACATATATATATATCTGTTCTGGTGGCCTAG
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCAC------ATATATCTGTTCTGGTGACCTAG
63015120 CCACAATA
60 CCACAATA
63015128 TCTGGCAGCCTCGCTGCAAT
1 TCTGGCAGCCTCGCTGCAAT
63015148 TTCGGTGGTG
Statistics
Matches: 80, Mismatches: 6, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
66 7 0.09
67 26 0.32
72 47 0.59
ACGTcount: A:0.19, C:0.29, G:0.22, T:0.30
Consensus pattern (67 bp):
TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACCTAGCCACAA
TA
Found at i:63017215 original size:18 final size:18
Alignment explanation
Indices: 63017189--63017231 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
63017179 CCATTATAGT
*
63017189 AACAATAATCAGTGCAGA
1 AACAGTAATCAGTGCAGA
*
63017207 AACAGTAATCAGTGCAGT
1 AACAGTAATCAGTGCAGA
63017225 AACAGTA
1 AACAGTA
63017232 TACACGTCCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.47, C:0.16, G:0.19, T:0.19
Consensus pattern (18 bp):
AACAGTAATCAGTGCAGA
Found at i:63017606 original size:27 final size:26
Alignment explanation
Indices: 63017544--63017704 Score: 146
Period size: 27 Copynumber: 6.0 Consensus size: 26
63017534 ATATGCATAC
*
63017544 ACCACATAAGGACAAAACA-TCCATCTT
1 ACCACATAAGG-CAAAACAGT-CATTTT
* * *
63017571 ACTC-TATAAGGACAAAATAGTTATTTT
1 AC-CACATAAGG-CAAAACAGTCATTTT
* *
63017598 ACCACATAAAGGCAAAAAAATCATTTT
1 ACCACAT-AAGGCAAAACAGTCATTTT
* *
63017625 ACCACATTAGGGCAAAACAGTTATTTT
1 ACCACA-TAAGGCAAAACAGTCATTTT
63017652 ACCACATAATGGCAAAACAGTCATTTT
1 ACCACATAA-GGCAAAACAGTCATTTT
* *
63017679 ACCACATAAAGGAAAAATAGTCATTT
1 ACCACAT-AAGGCAAAACAGTCATTT
63017705 AATTAATTTG
Statistics
Matches: 111, Mismatches: 16, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
26 3 0.03
27 99 0.89
28 9 0.08
ACGTcount: A:0.44, C:0.19, G:0.11, T:0.26
Consensus pattern (26 bp):
ACCACATAAGGCAAAACAGTCATTTT
Found at i:63025764 original size:16 final size:16
Alignment explanation
Indices: 63025740--63025770 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
63025730 CATCTTCACT
63025740 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
63025756 TACTTACTTACTTAA
1 TACTCACTTACTTAA
63025771 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:63025776 original size:20 final size:20
Alignment explanation
Indices: 63025737--63025776 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
63025727 AAACATCTTC
* *
63025737 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
63025757 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
63025777 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:63026152 original size:55 final size:53
Alignment explanation
Indices: 63026032--63026216 Score: 178
Period size: 55 Copynumber: 3.4 Consensus size: 53
63026022 CATGTCTCGA
* *
63026032 CATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGG
1 CATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAATGCCATGCCATGG
* * **
63026085 CATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTTATCAATGCCATTTCATGAG
1 CATGGTCTTACATGGGATCC-TTGCCTTAT-G-AACTCACCAATGCCATGCCATG-G
* * * * *
63026141 -ATGGTCTTACATGGTATCCTTGCATTA-GAAACCTTACCAATTACCATGCCTTGG
1 CATGGTCTTACATGGGATCCTTGCCTTATG-AA-CTCACCAA-TGCCATGCCATGG
*
63026195 CATGGTCTTACATGGTATCCTT
1 CATGGTCTTACATGGGATCCTT
63026217 AAACCCTAAT
Statistics
Matches: 110, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 28 0.25
54 9 0.08
55 68 0.62
56 3 0.03
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (53 bp):
CATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAATGCCATGCCATGG
Found at i:63034229 original size:28 final size:28
Alignment explanation
Indices: 63034166--63034316 Score: 214
Period size: 28 Copynumber: 5.4 Consensus size: 28
63034156 ATATTAAGTC
*
63034166 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
63034193 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
63034221 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
63034249 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* * *
63034277 CGCACACTTAGTGCTGTATAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
63034306 CGCACACTTAG
1 CGCACACTTAG
63034317 CGCCAATCTC
Statistics
Matches: 114, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
27 22 0.19
28 77 0.68
29 15 0.13
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:63050722 original size:40 final size:39
Alignment explanation
Indices: 63050638--63050822 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 39
63050628 TTGAATGATG
* * * *
63050638 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
63050678 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
63050718 TCCGGGCTAAGCCACGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTC-CGAAGGCATTTGTGCGAGTTACTAAA
*
63050758 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
63050799 --CGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
63050823 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 15, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
39 23 0.18
40 91 0.73
41 11 0.09
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:63050775 original size:80 final size:80
Alignment explanation
Indices: 63050638--63050822 Score: 225
Period size: 80 Copynumber: 2.3 Consensus size: 80
63050628 TTGAATGATG
*
63050638 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
63050702 TGTGCGAGATACTAAT
66 TGTGCGAGATACT-AT
* * * **
63050718 TCCGGGCTAAG-CCACGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 TCCGGGCTAAGTCC-CGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
63050780 TTTGTGCGAGTTACTAT
64 TTTGTGCGAGATACTAT
** *
63050797 AACGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
63050823 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
79 25 0.27
80 59 0.65
81 7 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTAT
Found at i:63050841 original size:79 final size:79
Alignment explanation
Indices: 63050691--63050855 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
63050681 GGACTAAGAT
** **
63050691 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCACGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTTGTGCGAGATACTAATAACGGGCTAAGCCACGAAGGCATTTGAACGAGTTACTA
*
63050756 AATCCGGGTTAAGTC
66 AATCC-GGTTAAATC
* *
63050771 CCGAAGGCATTTGTGCGAGTTACT-ATAACGGGCTATGTCC-CGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAATAACGGGCTAAG-CCACGAAGGCATTTGAACGAGTTA-C
* *
63050833 TATATCCGGTTAAATT
64 TAAATCCGGTTAAATC
63050849 CCGAAGG
1 CCGAAGG
63050856 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 16 0.22
79 33 0.45
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATAACGGGCTAAGCCACGAAGGCATTTGAACGAGTTACTA
AATCCGGTTAAATC
Found at i:63058666 original size:40 final size:40
Alignment explanation
Indices: 63058584--63058813 Score: 261
Period size: 40 Copynumber: 5.7 Consensus size: 40
63058574 TTGAATGATG
* * * *
63058584 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
63058623 TCCGGACTAAGAT-CCGAAGGCATTTGTACGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
63058663 TCCGGACTAAGAT-CCGAAGGCATTGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAA-G----GCATTTGTGCGAGTTACTAAA
*
63058708 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
63058748 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
63058789 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
63058814 AACGAGTAGC
Statistics
Matches: 170, Mismatches: 12, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
39 18 0.11
40 113 0.66
41 3 0.02
44 2 0.01
45 34 0.20
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:63058725 original size:85 final size:80
Alignment explanation
Indices: 63058584--63058820 Score: 257
Period size: 85 Copynumber: 2.9 Consensus size: 80
63058574 TTGAATGATG
* * * * * *
63058584 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAG-TCCCGAAGGCATT
63058647 TGTACGAGTTACTAAA
65 TGTACGAGTTACTAAA
*
63058663 TCCGGACTAAGAT-CCGAAGGCATTGCATTTGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAA
1 TCCGGACTAAG-TCCCGAA-G----GCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAA
*
63058726 GGCATTTGTGCGAGTTACTAAA
59 GGCATTTGTACGAGTTACTAAA
** * *
63058748 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
*
63058813 GAACGAGT
66 GTACGAGT
63058821 AGCTATATCC
Statistics
Matches: 132, Mismatches: 15, Indels: 21
0.79 0.09 0.12
Matches are distributed among these distances:
79 15 0.11
80 48 0.36
81 2 0.02
84 6 0.05
85 61 0.46
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTACGAGTTACTAAA
Found at i:63067274 original size:40 final size:40
Alignment explanation
Indices: 63067200--63067421 Score: 322
Period size: 40 Copynumber: 5.6 Consensus size: 40
63067190 AACCCAAGTA
* *
63067200 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
63067239 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
63067279 CCTTCGGGACTTAGCCCAGATTTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
63067319 CCTTCGGGACTTAGCCCGGATTTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* * *
63067359 CCTTTGGGACTTAGCCCGGATATAGTCACTAGCATAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
63067399 CCTTCGGGACATAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
63067422 CATTCGAATA
Statistics
Matches: 166, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 12 0.07
40 153 0.92
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:63083697 original size:68 final size:68
Alignment explanation
Indices: 63083573--63083707 Score: 166
Period size: 68 Copynumber: 2.0 Consensus size: 68
63083563 AAGCCTATGG
* ** ***
63083573 GTAAACATGACACCTTATTACGTAAGACCATAGCTGGGCTATAGCAACATCTGAAGTCCACCAGG
1 GTAAACATGACACCATATTACGTAAGACCATAAATGGGCTATAGCAACAAAAGAAGTCCACCAGG
63083638 ATA
66 ATA
**
63083641 GTAAACATGACACCATATTGA-GTAAGACCATAAATGGGCTGA-AGCAACAAAAGAAGTCTGCCA
1 GTAAACATGACACCATATT-ACGTAAGACCATAAATGGGCT-ATAGCAACAAAAGAAGTCCACCA
63083704 GGAT
64 GGAT
63083708 GGTGAACCAA
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
68 55 0.96
69 2 0.04
ACGTcount: A:0.39, C:0.21, G:0.21, T:0.20
Consensus pattern (68 bp):
GTAAACATGACACCATATTACGTAAGACCATAAATGGGCTATAGCAACAAAAGAAGTCCACCAGG
ATA
Found at i:63084176 original size:14 final size:14
Alignment explanation
Indices: 63084157--63084187 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
63084147 GCTTTCTGTT
63084157 ATGGGATAATCCAC
1 ATGGGATAATCCAC
63084171 ATGGGATAATCCAC
1 ATGGGATAATCCAC
63084185 ATG
1 ATG
63084188 AGGCTAACTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (14 bp):
ATGGGATAATCCAC
Found at i:63084670 original size:18 final size:18
Alignment explanation
Indices: 63084643--63084678 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
63084633 AGGGAAAGTA
*
63084643 TGGAAGTCTGAGATAGAG
1 TGGAAATCTGAGATAGAG
63084661 TGGAAATCTGAGATAGAG
1 TGGAAATCTGAGATAGAG
63084679 CCTGATGTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.36, C:0.06, G:0.36, T:0.22
Consensus pattern (18 bp):
TGGAAATCTGAGATAGAG
Found at i:63088096 original size:18 final size:18
Alignment explanation
Indices: 63088075--63088109 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
63088065 CATAAATCAC
* *
63088075 ATAAACTTGATAAATAAG
1 ATAAACATGAAAAATAAG
63088093 ATAAACATGAAAAATAA
1 ATAAACATGAAAAATAA
63088110 ATCAAGAGTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.63, C:0.06, G:0.09, T:0.23
Consensus pattern (18 bp):
ATAAACATGAAAAATAAG
Found at i:63089179 original size:104 final size:104
Alignment explanation
Indices: 63088994--63089181 Score: 277
Period size: 104 Copynumber: 1.8 Consensus size: 104
63088984 GCCTATTACA
* ** * * *
63088994 GAATGTATGTGCAAGTTACCATTGCATTGAATGCATGAATTGTTTTGTGTTGGAATGTATATGTG
1 GAATGTATATGCAAGTTACCATTGCACCGAATGCATGAATTATTTTGTGATGGAATATATATGTG
* ** *
63089059 AGTTTCCATTGGATCGAATGCATGAACTGGTTTGTGATG
66 AGCTGACATTGCATCGAATGCATGAACTGGTTTGTGATG
*
63089098 GAATGTATATGCAAGTTGCCATTGCACCGAATGCATGAATTATTTTGTGATGGAATATATATGTG
1 GAATGTATATGCAAGTTACCATTGCACCGAATGCATGAATTATTTTGTGATGGAATATATATGTG
63089163 AGCTGACATTGCATCGAAT
66 AGCTGACATTGCATCGAAT
63089182 ATATGAAATG
Statistics
Matches: 73, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
104 73 1.00
ACGTcount: A:0.28, C:0.11, G:0.25, T:0.36
Consensus pattern (104 bp):
GAATGTATATGCAAGTTACCATTGCACCGAATGCATGAATTATTTTGTGATGGAATATATATGTG
AGCTGACATTGCATCGAATGCATGAACTGGTTTGTGATG
Found at i:63089188 original size:52 final size:52
Alignment explanation
Indices: 63089007--63089181 Score: 224
Period size: 52 Copynumber: 3.4 Consensus size: 52
63088997 TGTATGTGCA
* * *
63089007 AGTTACCATTGCATTGAATGCATGAATTGTTTTGTGTTGGAATGTATATGTG
1 AGTTGCCATTGCATCGAATGCATGAATTGTTTTGTGATGGAATGTATATGTG
* * * * **
63089059 AGTTTCCATTGGATCGAATGCATGAACTGGTTTGTGATGGAATGTATATGCA
1 AGTTGCCATTGCATCGAATGCATGAATTGTTTTGTGATGGAATGTATATGTG
* * *
63089111 AGTTGCCATTGCACCGAATGCATGAATTATTTTGTGATGGAATATATATGTG
1 AGTTGCCATTGCATCGAATGCATGAATTGTTTTGTGATGGAATGTATATGTG
* *
63089163 AGCTGACATTGCATCGAAT
1 AGTTGCCATTGCATCGAAT
63089182 ATATGAAATG
Statistics
Matches: 103, Mismatches: 20, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
52 103 1.00
ACGTcount: A:0.27, C:0.11, G:0.25, T:0.37
Consensus pattern (52 bp):
AGTTGCCATTGCATCGAATGCATGAATTGTTTTGTGATGGAATGTATATGTG
Found at i:63089422 original size:27 final size:25
Alignment explanation
Indices: 63089391--63089443 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 25
63089381 GGATTTTGTA
*
63089391 AAGTATTCATGTGTGTGCTAACTCTAT
1 AAGTATTCATGTGCGTGCT--CTCTAT
63089418 AAGTATTCATGTGCGTGCTCTCTAT
1 AAGTATTCATGTGCGTGCTCTCTAT
63089443 A
1 A
63089444 GAAAGTAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 7 0.28
27 18 0.72
ACGTcount: A:0.25, C:0.17, G:0.19, T:0.40
Consensus pattern (25 bp):
AAGTATTCATGTGCGTGCTCTCTAT
Found at i:63089637 original size:18 final size:17
Alignment explanation
Indices: 63089616--63089650 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
63089606 CGTGCAATCC
63089616 GTGCCAAATGTGCGAGTT
1 GTGCC-AATGTGCGAGTT
*
63089634 GTGCCCATGTGCGAGTT
1 GTGCCAATGTGCGAGTT
63089651 ATGATCATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.17, C:0.20, G:0.34, T:0.29
Consensus pattern (17 bp):
GTGCCAATGTGCGAGTT
Found at i:63089659 original size:17 final size:17
Alignment explanation
Indices: 63089623--63089661 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
63089613 TCCGTGCCAA
* *
63089623 ATGTGCGAGTTGTGCCC
1 ATGTGCGAGTTATGACC
*
63089640 ATGTGCGAGTTATGATC
1 ATGTGCGAGTTATGACC
63089657 ATGTG
1 ATGTG
63089662 TGAACTATGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.18, C:0.15, G:0.33, T:0.33
Consensus pattern (17 bp):
ATGTGCGAGTTATGACC
Found at i:63092841 original size:31 final size:31
Alignment explanation
Indices: 63092762--63092824 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
63092752 GACATGTCAC
*
63092762 TAGGAACTATGTGGATATCAGCTCATGAATA
1 TAGGAACTATGTGGATATCAACTCATGAATA
63092793 TAGGAACTATGTGGATATCAACTCATGAATA
1 TAGGAACTATGTGGATATCAACTCATGAATA
63092824 T
1 T
63092825 GTGTGTATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.30
Consensus pattern (31 bp):
TAGGAACTATGTGGATATCAACTCATGAATA
Found at i:63095494 original size:30 final size:30
Alignment explanation
Indices: 63095458--63095517 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
63095448 AAATGAGACA
63095458 AGGGATTATAATGTAATGAACTTATCTATG
1 AGGGATTATAATGTAATGAACTTATCTATG
63095488 AGGGATTATAATGTAATGAACTTATCTATG
1 AGGGATTATAATGTAATGAACTTATCTATG
63095518 TTAAATTGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.37, C:0.07, G:0.20, T:0.37
Consensus pattern (30 bp):
AGGGATTATAATGTAATGAACTTATCTATG
Found at i:63096604 original size:15 final size:15
Alignment explanation
Indices: 63096584--63096651 Score: 82
Period size: 15 Copynumber: 4.5 Consensus size: 15
63096574 ATTATGATAT
63096584 TGTATCTTGGATTTC
1 TGTATCTTGGATTTC
*
63096599 TGTATCTTGAATTTC
1 TGTATCTTGGATTTC
* *
63096614 TTTATCTAGGATTTC
1 TGTATCTTGGATTTC
* * *
63096629 TTTGTCTTGGACTTC
1 TGTATCTTGGATTTC
63096644 TGTATCTT
1 TGTATCTT
63096652 AGTTTTTATG
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 44 1.00
ACGTcount: A:0.15, C:0.15, G:0.16, T:0.54
Consensus pattern (15 bp):
TGTATCTTGGATTTC
Found at i:63104065 original size:25 final size:25
Alignment explanation
Indices: 63104037--63104096 Score: 120
Period size: 25 Copynumber: 2.4 Consensus size: 25
63104027 ACAAAATACA
63104037 CCACAAAGGCAACATACATAATATG
1 CCACAAAGGCAACATACATAATATG
63104062 CCACAAAGGCAACATACATAATATG
1 CCACAAAGGCAACATACATAATATG
63104087 CCACAAAGGC
1 CCACAAAGGC
63104097 TAGAAGAATG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.47, C:0.27, G:0.13, T:0.13
Consensus pattern (25 bp):
CCACAAAGGCAACATACATAATATG
Found at i:63104109 original size:20 final size:20
Alignment explanation
Indices: 63104084--63104149 Score: 80
Period size: 20 Copynumber: 3.2 Consensus size: 20
63104074 CATACATAAT
63104084 ATGCCACAAAGGCTAGA-AGA
1 ATGCCACAAAGGCTA-ACAGA
* *
63104104 ATGCCATAAAGGCTAACAAA
1 ATGCCACAAAGGCTAACAGA
63104124 ATGTGCCACAAAGGCTAACAGA
1 A--TGCCACAAAGGCTAACAGA
63104146 ATGC
1 ATGC
63104150 ATTACAAATG
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
19 1 0.03
20 20 0.51
22 18 0.46
ACGTcount: A:0.44, C:0.21, G:0.21, T:0.14
Consensus pattern (20 bp):
ATGCCACAAAGGCTAACAGA
Found at i:63104136 original size:22 final size:22
Alignment explanation
Indices: 63104085--63104148 Score: 80
Period size: 22 Copynumber: 3.0 Consensus size: 22
63104075 ATACATAATA
63104085 TGCCACAAAGGCTAGA-AGAA--
1 TGCCACAAAGGCTA-ACAGAATG
* *
63104105 TGCCATAAAGGCTAACAAAATG
1 TGCCACAAAGGCTAACAGAATG
63104127 TGCCACAAAGGCTAACAGAATG
1 TGCCACAAAGGCTAACAGAATG
63104149 CATTACAAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
19 1 0.03
20 16 0.43
22 20 0.54
ACGTcount: A:0.44, C:0.20, G:0.22, T:0.14
Consensus pattern (22 bp):
TGCCACAAAGGCTAACAGAATG
Found at i:63112223 original size:3 final size:3
Alignment explanation
Indices: 63112215--63112241 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
63112205 GAATTGAATT
63112215 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
63112242 GCCAGGTTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:63120804 original size:2 final size:2
Alignment explanation
Indices: 63120792--63120821 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
63120782 ATTAAGATTT
*
63120792 TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
63120822 AAAGAACTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:63120894 original size:17 final size:17
Alignment explanation
Indices: 63120872--63120906 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
63120862 AGTTATTCAT
63120872 ATGCATTTAAATTAGAC
1 ATGCATTTAAATTAGAC
63120889 ATGCATTTAAATTAGAC
1 ATGCATTTAAATTAGAC
63120906 A
1 A
63120907 ACCATTTGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.34
Consensus pattern (17 bp):
ATGCATTTAAATTAGAC
Found at i:63120912 original size:17 final size:17
Alignment explanation
Indices: 63120875--63120913 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
63120865 TATTCATATG
**
63120875 CATTTAAATTAGACATG
1 CATTTAAATTAGACAAC
63120892 CATTTAAATTAGACAAC
1 CATTTAAATTAGACAAC
63120909 CATTT
1 CATTT
63120914 GTCTAACTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.41, C:0.15, G:0.08, T:0.36
Consensus pattern (17 bp):
CATTTAAATTAGACAAC
Found at i:63135529 original size:40 final size:41
Alignment explanation
Indices: 63135466--63135558 Score: 125
Period size: 40 Copynumber: 2.3 Consensus size: 41
63135456 GCTGTGTAAG
* * * *
63135466 ACGCCTGTGTCCCAGGCCGTGTCAACCACACAGCT-GAGAC
1 ACGCCCGTGTCCCAAGCCATGTCAACCACACAGCTAGACAC
*
63135506 ACGCCCGTGTCCCAAGCCATGTCAACCACACGGCTAAGACAC
1 ACGCCCGTGTCCCAAGCCATGTCAACCACACAGCT-AGACAC
63135548 ACGCCCGTGTC
1 ACGCCCGTGTC
63135559 TCTGCCTGTG
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
40 31 0.67
42 15 0.33
ACGTcount: A:0.24, C:0.40, G:0.23, T:0.14
Consensus pattern (41 bp):
ACGCCCGTGTCCCAAGCCATGTCAACCACACAGCTAGACAC
Found at i:63136510 original size:15 final size:15
Alignment explanation
Indices: 63136490--63136520 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
63136480 TTGGGCACTC
63136490 AATTTAGTCAAAAGG
1 AATTTAGTCAAAAGG
63136505 AATTTAGTCAAAAGG
1 AATTTAGTCAAAAGG
63136520 A
1 A
63136521 CTAAATTGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.48, C:0.06, G:0.19, T:0.26
Consensus pattern (15 bp):
AATTTAGTCAAAAGG
Found at i:63160251 original size:39 final size:40
Alignment explanation
Indices: 63160134--63160318 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
63160124 GCTACTCGTT
* * *
63160134 CAAATGCCTTCGGGACATAGCCCGG-TTATAATAACTCGAA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
63160174 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
63160214 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
63160253 CAAATGCCTTC-GGATCTTAGTCCAGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
63160294 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
63160319 CATCATTCAA
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.27
40 75 0.61
41 13 0.11
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:63160256 original size:79 final size:82
Alignment explanation
Indices: 63160134--63160318 Score: 211
Period size: 79 Copynumber: 2.3 Consensus size: 82
63160124 GCTACTCGTT
* *
63160134 CAAATGCCTTCGGGACATAGCCCGG-TTATAATAACTCGAACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAATAACTCGAACAAATGCCTTC-GGATCTTAACCC
* * *
63160197 GGATTTAGTAAC-TCGCA
65 AGATATAGTAACTTAGCA
* * * **
63160214 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAATAACTCGAACAAATGCCTTCGGATCTTAACCCA
* *
63160277 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
63160294 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
63160319 CATCATTCAA
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 3 0.03
79 52 0.58
80 34 0.38
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAATAACTCGAACAAATGCCTTCGGATCTTAACCCA
GATATAGTAACTTAGCA
Found at i:63168152 original size:40 final size:40
Alignment explanation
Indices: 63168108--63168291 Score: 189
Period size: 40 Copynumber: 4.6 Consensus size: 40
63168098 GCTACTCGTT
* *
63168108 CAAATGCCTTCGGGACATAGCCCGGTTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
63168148 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* * *
63168188 CAAACGCCTTCGGG-CTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * * *
63168227 CAAATGCCTTC-GGATCTTAGTCCAGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
63168268 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
63168292 ACATCATTCA
Statistics
Matches: 119, Mismatches: 17, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 73 0.61
41 14 0.12
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:63168210 original size:79 final size:80
Alignment explanation
Indices: 63168108--63168292 Score: 207
Period size: 79 Copynumber: 2.3 Consensus size: 80
63168098 GCTACTCGTT
* *
63168108 CAAATGCCTTCGGGACATAGCCCGG-TTATAATAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAA-GCCTTCGGGACTTAGCCCGGAAT-TAATAACTCGCACAAATGCCTTC-GGATCTTAACCC
* * *
63168171 GGATTTAGTAAC-TCGCA
63 AGATATAGTAACTTAGCA
* * **
63168188 CAAACGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCAG
1 CAAA-GCCTTCGGGACTTAGCCCGGAATTAATAACTCGCACAAATGCCTTCGGATCTTAACCCAG
* *
63168252 ATATGGTCACTTAGCA
65 ATATAGTAACTTAGCA
63168268 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
63168293 CATCATTCAA
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.60
80 33 0.37
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATTAATAACTCGCACAAATGCCTTCGGATCTTAACCCAGA
TATAGTAACTTAGCA
Found at i:63172076 original size:28 final size:29
Alignment explanation
Indices: 63172022--63172083 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 29
63172012 GAAAACGTAT
*
63172022 ATATGAATGTGATTTGGGCATAATGGGCC
1 ATATGAATGAGATTTGGGCATAATGGGCC
* *
63172051 ATATGAATGAGA-TTGGGCCTAGTGGGCC
1 ATATGAATGAGATTTGGGCATAATGGGCC
63172079 ATATG
1 ATATG
63172084 CATGTATGTA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 19 0.63
29 11 0.37
ACGTcount: A:0.27, C:0.11, G:0.32, T:0.29
Consensus pattern (29 bp):
ATATGAATGAGATTTGGGCATAATGGGCC
Found at i:63174098 original size:46 final size:46
Alignment explanation
Indices: 63174003--63174171 Score: 166
Period size: 46 Copynumber: 3.6 Consensus size: 46
63173993 AAATCGATGC
* * * *
63174003 CATGTCCCAGACATGGTCTTACACTGAC-TATCATCTCGTAGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTTA-CGTCTC-AAGCCGTTG
63174050 CATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCAAGGCCGTTG
1 CATGTCCCAGACATGGTCTTACACTGGCTTACGTCTCAA-GCCGTTG
* * * * *
63174096 CATGTCCCAGACAT-GTCTTACACTAGCCCT-CGTCTCAATCCCAATTC
1 CATGTCCCAGACATGGTCTTACACT-GGCTTACGTCTCAA-GCC-GTTG
*
63174143 CATGTCCCAGACATGGTCTTACATTGGCT
1 CATGTCCCAGACATGGTCTTACACTGGCT
63174172 CTCATAATGT
Statistics
Matches: 104, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
45 1 0.01
46 57 0.55
47 37 0.36
48 9 0.09
ACGTcount: A:0.22, C:0.32, G:0.18, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGGTCTTACACTGGCTTACGTCTCAAGCCGTTG
Found at i:63191365 original size:21 final size:21
Alignment explanation
Indices: 63191341--63191384 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
63191331 CAACAATGAC
63191341 ATAACTCAAAATCATCATCAA
1 ATAACTCAAAATCATCATCAA
**
63191362 ATAACTCAATCTCATCATCAA
1 ATAACTCAAAATCATCATCAA
63191383 AT
1 AT
63191385 TCTAAAATTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.25, G:0.00, T:0.27
Consensus pattern (21 bp):
ATAACTCAAAATCATCATCAA
Found at i:63192811 original size:45 final size:45
Alignment explanation
Indices: 63192762--63192910 Score: 176
Period size: 45 Copynumber: 3.3 Consensus size: 45
63192752 TTCAGCCACA
* *
63192762 GTCTTATTTATTTTCGACATGATGCCATAGTGCCTTTCAACTATG
1 GTCTTATTCATTTTCGACATGATGCCATAGTGTCTTTCAACTATG
* * * *
63192807 GTCTTATTCATTTCCGTCATGTTGCCATAGTGTCTTTCAAGTATG
1 GTCTTATTCATTTTCGACATGATGCCATAGTGTCTTTCAACTATG
* * *
63192852 GTCCTATTCA-TTTCAGATAT-AGTGTCATAGTGTCTTTCAACTATG
1 GTCTTATTCATTTTC-GACATGA-TGCCATAGTGTCTTTCAACTATG
*
63192897 GTCTTTTTCATTTT
1 GTCTTATTCATTTT
63192911 TCAAGACAAT
Statistics
Matches: 86, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
44 3 0.03
45 80 0.93
46 3 0.03
ACGTcount: A:0.20, C:0.19, G:0.15, T:0.46
Consensus pattern (45 bp):
GTCTTATTCATTTTCGACATGATGCCATAGTGTCTTTCAACTATG
Found at i:63196020 original size:45 final size:45
Alignment explanation
Indices: 63195953--63196169 Score: 300
Period size: 45 Copynumber: 4.9 Consensus size: 45
63195943 CACACAGTAT
*
63195953 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATGC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
* *
63195998 TATTCGGGCCTTTGAGCTTAGCAAGCTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
*
63196043 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
* * *
63196088 TATTCAGGCCTTTAAGCCTAGCAGGCTATAATGCCGGTGAAATGA-
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGAT-AC
* *
63196133 TA-TCGGG--TTTAAAACCTAGCAGGCTA-AATGCCGGTGA
1 TATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTGA
63196170 TTTGATAAAA
Statistics
Matches: 158, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
42 14 0.09
43 14 0.09
44 4 0.03
45 125 0.79
46 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
Found at i:63198775 original size:21 final size:21
Alignment explanation
Indices: 63198750--63198808 Score: 84
Period size: 21 Copynumber: 2.9 Consensus size: 21
63198740 TATAATGAGT
*
63198750 ATATCATGTGCATCTCATAAC
1 ATATCATGTGCATATCATAAC
**
63198771 ATATCATGTGCATATCATGTC
1 ATATCATGTGCATATCATAAC
63198792 ATATCATGT-CATATCAT
1 ATATCATGTGCATATCAT
63198809 GTATATCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
20 8 0.23
21 27 0.77
ACGTcount: A:0.32, C:0.20, G:0.10, T:0.37
Consensus pattern (21 bp):
ATATCATGTGCATATCATAAC
Found at i:63198794 original size:10 final size:10
Alignment explanation
Indices: 63198750--63198816 Score: 82
Period size: 10 Copynumber: 6.6 Consensus size: 10
63198740 TATAATGAGT
63198750 ATATCATGTGC
1 ATATCATGT-C
* **
63198761 ATCTCATAAC
1 ATATCATGTC
63198771 ATATCATGTGC
1 ATATCATGT-C
63198782 ATATCATGTC
1 ATATCATGTC
63198792 ATATCATGTC
1 ATATCATGTC
63198802 ATATCATGT-
1 ATATCATGTC
63198811 ATATCA
1 ATATCA
63198817 AAATCTCATG
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
9 6 0.12
10 27 0.55
11 16 0.33
ACGTcount: A:0.33, C:0.19, G:0.10, T:0.37
Consensus pattern (10 bp):
ATATCATGTC
Found at i:63206533 original size:11 final size:11
Alignment explanation
Indices: 63206484--63206548 Score: 55
Period size: 11 Copynumber: 6.1 Consensus size: 11
63206474 ACCCAACCCA
*
63206484 TGCATATAATG
1 TGCATATCATG
* *
63206495 AGTATATCATG
1 TGCATATCATG
* *
63206506 TGCATCTCATAA
1 TGCATATCAT-G
63206518 T--ATATCATG
1 TGCATATCATG
63206527 TGCATATCATG
1 TGCATATCATG
63206538 T-CATATCATG
1 TGCATATCATG
63206548 T
1 T
63206549 ATATCAAAAT
Statistics
Matches: 42, Mismatches: 9, Indels: 7
0.72 0.16 0.12
Matches are distributed among these distances:
9 1 0.02
10 16 0.38
11 24 0.57
12 1 0.02
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.38
Consensus pattern (11 bp):
TGCATATCATG
Found at i:63206542 original size:10 final size:10
Alignment explanation
Indices: 63206519--63206554 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
63206509 ATCTCATAAT
63206519 ATATCATGTGC
1 ATATCATGT-C
63206530 ATATCATGTC
1 ATATCATGTC
63206540 ATATCATGT-
1 ATATCATGTC
63206549 ATATCA
1 ATATCA
63206555 AAATCTCATG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 6 0.24
10 10 0.40
11 9 0.36
ACGTcount: A:0.33, C:0.17, G:0.11, T:0.39
Consensus pattern (10 bp):
ATATCATGTC
Found at i:63206548 original size:21 final size:21
Alignment explanation
Indices: 63206497--63206536 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
63206487 ATATAATGAG
*
63206497 TATATCATGTGCATCTCATAA
1 TATATCATGTGCATATCATAA
63206518 TATATCATGTGCATATCAT
1 TATATCATGTGCATATCAT
63206537 GTCATATCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.33, C:0.17, G:0.10, T:0.40
Consensus pattern (21 bp):
TATATCATGTGCATATCATAA
Found at i:63213618 original size:45 final size:45
Alignment explanation
Indices: 63213554--63213728 Score: 332
Period size: 45 Copynumber: 3.9 Consensus size: 45
63213544 CGCACAGTAT
*
63213554 TATTCGGGCCTTTGAGCCTAGCAGGCTATATTGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
*
63213599 TATTCGGGCCTTTGAGCCTAGCACGCTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
63213644 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
63213689 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
63213729 AATGATATCG
Statistics
Matches: 127, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 127 1.00
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
Found at i:63217990 original size:27 final size:27
Alignment explanation
Indices: 63217951--63218051 Score: 132
Period size: 27 Copynumber: 3.8 Consensus size: 27
63217941 CATTATCGCA
**
63217951 GCAAAGCTTCCAGTAACAGTAAATGTG
1 GCAAAGCCACCAGTAACAGTAAATGTG
* *
63217978 GCAAAGCCACCAGTATCAGTATATGTG
1 GCAAAGCCACCAGTAACAGTAAATGTG
* *
63218005 GCAAAGCCACCGGTAACAGTAATTGTG
1 GCAAAGCCACCAGTAACAGTAAATGTG
*
63218032 GCAGAGCCACCAGT-ACAGTA
1 GCAAAGCCACCAGTAACAGTA
63218052 CTTCCTCCAA
Statistics
Matches: 64, Mismatches: 10, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
26 6 0.09
27 58 0.91
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.19
Consensus pattern (27 bp):
GCAAAGCCACCAGTAACAGTAAATGTG
Found at i:63220967 original size:26 final size:26
Alignment explanation
Indices: 63220938--63221163 Score: 106
Period size: 26 Copynumber: 9.1 Consensus size: 26
63220928 TCCTCTCTCA
63220938 AGCCATATAACAGGAAGCTCACAAAG
1 AGCCATATAACAGGAAGCTCACAAAG
**
63220964 AGCCAT-TAATTGGGAAGCTCACAAAG
1 AGCCATATAA-CAGGAAGCTCACAAAG
* * *
63220990 AGCC-TAT--CAGAAAGCTTATC--CG
1 AGCCATATAACAGGAAGCTCA-CAAAG
* * *
63221012 GGCTATATAACAGGAAGCTCA-TAAG
1 AGCCATATAACAGGAAGCTCACAAAG
* * *
63221037 AGCCATA-ATCAGAAAGTTCACAAAG
1 AGCCATATAACAGGAAGCTCACAAAG
* * *
63221062 A--AATTTTATTCAGGAAGCTCACAAAG
1 AGCCA-TATA-ACAGGAAGCTCACAAAG
* * *
63221088 AGCC-TTTAATCAGG-AGCTC-CGAAT
1 AGCCATATAA-CAGGAAGCTCACAAAG
* * **
63221112 AGCCATATATCAGGAAGTTCA-AGCG
1 AGCCATATAACAGGAAGCTCACAAAG
63221137 AGCCATAT--CAGGAAGCTCACAAAG
1 AGCCATATAACAGGAAGCTCACAAAG
63221161 AGC
1 AGC
63221164 TGCAGTAGTC
Statistics
Matches: 145, Mismatches: 36, Indels: 40
0.66 0.16 0.18
Matches are distributed among these distances:
22 3 0.02
23 21 0.14
24 28 0.19
25 44 0.30
26 49 0.34
ACGTcount: A:0.39, C:0.21, G:0.20, T:0.19
Consensus pattern (26 bp):
AGCCATATAACAGGAAGCTCACAAAG
Found at i:63223257 original size:74 final size:75
Alignment explanation
Indices: 63223160--63223319 Score: 214
Period size: 74 Copynumber: 2.1 Consensus size: 75
63223150 CATAAATTAA
* *
63223160 AAAAGAAAATTAGGATTATTCCCTTACTAATAAAGAAGGAAAATGAAAAGTCAAAAAAAAGAATT
1 AAAAGAATA-TAGGATTATTCCCTTACTAATAAACAAGGAAAATGAAAAGTCAAAAAAAAGAATT
63223225 ATATT-ATTCC
65 ATATTCATTCC
* * * * *
63223235 AAAAGAATATAGGATTATTCCCTTATTAATAAACAATGTAAATGAACAGTTAAAAAAAAGAATTA
1 AAAAGAATATAGGATTATTCCCTTACTAATAAACAAGGAAAATGAAAAGTCAAAAAAAAGAATTA
* * *
63223300 TTTTCTTTTC
66 TATTCATTCC
63223310 AAAAGAATAT
1 AAAAGAATAT
63223320 TAATTTCCAT
Statistics
Matches: 74, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
74 53 0.72
75 21 0.28
ACGTcount: A:0.51, C:0.09, G:0.11, T:0.29
Consensus pattern (75 bp):
AAAAGAATATAGGATTATTCCCTTACTAATAAACAAGGAAAATGAAAAGTCAAAAAAAAGAATTA
TATTCATTCC
Found at i:63223467 original size:132 final size:135
Alignment explanation
Indices: 63223295--63223572 Score: 373
Period size: 138 Copynumber: 2.1 Consensus size: 135
63223285 TAAAAAAAAG
* * ** ***
63223295 AATTATTTTCTTTTCAAAAGAATATTAATTTCCATATCTTTTATATTTT-TTCGA-ATTTATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATATCTTTTATATTTTGACCGATACCAATTAA
* *
63223358 TATAA-TTATATTAATAAATTTGAAAAAATATATACAATTAATATTTTGTATGCATCAAATTCAT
66 TATAATTTATATTAATAAATTCGAAAAAATATATACAATTAATATTTTGTATGAATCAAATTCAT
63223422 ATATT
131 ATATT
* * *
63223427 AATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCGATACCAATTCA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATATCTTTTATATTTTGACCGATACCAATTAA
** *
63223492 TATAATTGTTTATATTAATAAATTCGGTAAAATATATTCAATTAATATTTTGTATGAATCAAATT
66 TATAA---TTTATATTAATAAATTCGAAAAAATATATACAATTAATATTTTGTATGAATCAAATT
63223557 CATATATT
128 CATATATT
63223565 AATTATAT
1 AATTATAT
63223573 CTATGTTCTC
Statistics
Matches: 125, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
132 45 0.36
133 3 0.02
134 10 0.08
138 67 0.54
ACGTcount: A:0.39, C:0.09, G:0.05, T:0.47
Consensus pattern (135 bp):
AATTATATTCTTTCCAAAAGAATATTAATTTCCATATCTTTTATATTTTGACCGATACCAATTAA
TATAATTTATATTAATAAATTCGAAAAAATATATACAATTAATATTTTGTATGAATCAAATTCAT
ATATT
Found at i:63227804 original size:19 final size:19
Alignment explanation
Indices: 63227780--63227817 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
63227770 AAATTGAATA
63227780 GACTTAGGTGAGCAAACAT
1 GACTTAGGTGAGCAAACAT
63227799 GACTTAGGTGAGCAAACAT
1 GACTTAGGTGAGCAAACAT
63227818 CGCCCCCAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.16, G:0.26, T:0.21
Consensus pattern (19 bp):
GACTTAGGTGAGCAAACAT
Found at i:63231130 original size:41 final size:41
Alignment explanation
Indices: 63230886--63231124 Score: 290
Period size: 41 Copynumber: 5.8 Consensus size: 41
63230876 TTAAACAGAT
** * * *
63230886 TCACCGGCATTTTGCCTGCTAGGCTTAAAGCCTG-ATTCAGTA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAAT--GTA
* * *
63230928 -CCCCGGCACTT-AGCCTGCTAGACATATAGTCTGAAATGTA
1 TCACCGGCA-TTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
* *
63230968 TCACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
63231009 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
63231050 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTG-AAT-TA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
* *
63231089 CTTCACCGGCATTAAGCCTGCTAGACGTAACGTCTG
1 --TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTG
63231125 TATTACATTC
Statistics
Matches: 179, Mismatches: 12, Indels: 13
0.88 0.06 0.06
Matches are distributed among these distances:
39 2 0.01
40 8 0.04
41 165 0.92
42 4 0.02
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (41 bp):
TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
Found at i:63238165 original size:41 final size:41
Alignment explanation
Indices: 63237921--63238159 Score: 290
Period size: 41 Copynumber: 5.8 Consensus size: 41
63237911 TTAAACAGAT
** * * *
63237921 TCACCGGCATTTTGCCTGCTAGGCTTAAAGCCTG-ATTCAGTA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAAT--GTA
* * *
63237963 -CCCCGGCACTT-AGCCTGCTAGACATATAGTCTGAAATGTA
1 TCACCGGCA-TTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
* *
63238003 TCACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
63238044 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
63238085 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTG-AAT-TA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
* *
63238124 CTTCACCGGCATTAAGCCTGCTAGACGTAACGTCTG
1 --TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTG
63238160 TATTACATTC
Statistics
Matches: 179, Mismatches: 12, Indels: 13
0.88 0.06 0.06
Matches are distributed among these distances:
39 2 0.01
40 8 0.04
41 165 0.92
42 4 0.02
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (41 bp):
TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
Found at i:63256061 original size:20 final size:19
Alignment explanation
Indices: 63256013--63256063 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 19
63256003 ACAGATAAAC
63256013 ATTAAATTAA-AATTTAAT
1 ATTAAATTAATAATTTAAT
*
63256031 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-AATTTAAT
63256051 ATTAAATTAATAA
1 ATTAAATTAATAA
63256064 AATATTATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
18 8 0.30
19 3 0.11
20 16 0.59
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.41
Consensus pattern (19 bp):
ATTAAATTAATAATTTAAT
Found at i:63256787 original size:24 final size:24
Alignment explanation
Indices: 63256755--63256802 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
63256745 AATTAGGCTC
63256755 TAGTGATTGAAATTATGTCCAGAA
1 TAGTGATTGAAATTATGTCCAGAA
63256779 TAGTGATTGAAATTATGTCCAGAA
1 TAGTGATTGAAATTATGTCCAGAA
63256803 GCATCGTTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.08, G:0.21, T:0.33
Consensus pattern (24 bp):
TAGTGATTGAAATTATGTCCAGAA
Found at i:63257724 original size:15 final size:15
Alignment explanation
Indices: 63257700--63257731 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
63257690 TATGCATACA
*
63257700 AAATATAAAAGACAT
1 AAATACAAAAGACAT
63257715 AAATACAAAAGACAT
1 AAATACAAAAGACAT
63257730 AA
1 AA
63257732 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.09, G:0.06, T:0.16
Consensus pattern (15 bp):
AAATACAAAAGACAT
Found at i:63260635 original size:17 final size:17
Alignment explanation
Indices: 63260615--63260653 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
63260605 AGCCTTTGGT
63260615 CAATTCAAAACCTATAA
1 CAATTCAAAACCTATAA
**
63260632 CAATTGGAAACCTATAA
1 CAATTCAAAACCTATAA
63260649 CAATT
1 CAATT
63260654 GGACTTTTAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.49, C:0.21, G:0.05, T:0.26
Consensus pattern (17 bp):
CAATTCAAAACCTATAA
Found at i:63260654 original size:17 final size:17
Alignment explanation
Indices: 63260622--63260656 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
63260612 GGTCAATTCA
63260622 AAACCTATAACAATTGG
1 AAACCTATAACAATTGG
63260639 AAACCTATAACAATTGG
1 AAACCTATAACAATTGG
63260656 A
1 A
63260657 CTTTTACAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.49, C:0.17, G:0.11, T:0.23
Consensus pattern (17 bp):
AAACCTATAACAATTGG
Found at i:63271388 original size:6 final size:6
Alignment explanation
Indices: 63271328--63271386 Score: 82
Period size: 6 Copynumber: 9.8 Consensus size: 6
63271318 ACTTGAAGAT
* * *
63271328 GATGGA GATGGA GATGGA GATGGA GATGGA GATGGA AATGGT GATGGT
1 GATGGA GATGGA GATGGA GATGGA GATGGA GATGGA GATGGA GATGGA
*
63271376 GATGGT GATGG
1 GATGGA GATGG
63271387 TGCACTGGTT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 50 1.00
ACGTcount: A:0.29, C:0.00, G:0.49, T:0.22
Consensus pattern (6 bp):
GATGGA
Found at i:63271565 original size:76 final size:76
Alignment explanation
Indices: 63271439--63271594 Score: 312
Period size: 76 Copynumber: 2.1 Consensus size: 76
63271429 AGTCTTCCAG
63271439 AAACCGATCTTTGAGTCCTTGCGGTCATATGTAACAAGAGTATTCCGCACAATGATTCCTATTAC
1 AAACCGATCTTTGAGTCCTTGCGGTCATATGTAACAAGAGTATTCCGCACAATGATTCCTATTAC
63271504 AACACGAAAGA
66 AACACGAAAGA
63271515 AAACCGATCTTTGAGTCCTTGCGGTCATATGTAACAAGAGTATTCCGCACAATGATTCCTATTAC
1 AAACCGATCTTTGAGTCCTTGCGGTCATATGTAACAAGAGTATTCCGCACAATGATTCCTATTAC
63271580 AACACGAAAGA
66 AACACGAAAGA
63271591 AAAC
1 AAAC
63271595 AACAAAACAG
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 80 1.00
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (76 bp):
AAACCGATCTTTGAGTCCTTGCGGTCATATGTAACAAGAGTATTCCGCACAATGATTCCTATTAC
AACACGAAAGA
Found at i:63272163 original size:27 final size:27
Alignment explanation
Indices: 63272125--63272180 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
63272115 CAATATTAAC
63272125 AATATTACATAACTAATCATTTTATAT
1 AATATTACATAACTAATCATTTTATAT
63272152 AATATTACATAACTAATCATTTTATAT
1 AATATTACATAACTAATCATTTTATAT
63272179 AA
1 AA
63272181 CAAGTAGATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.46, C:0.11, G:0.00, T:0.43
Consensus pattern (27 bp):
AATATTACATAACTAATCATTTTATAT
Found at i:63275156 original size:31 final size:30
Alignment explanation
Indices: 63275081--63275157 Score: 82
Period size: 31 Copynumber: 2.5 Consensus size: 30
63275071 ATTACATTAG
*
63275081 TAGTCACCTAACTATTAGTAAATTTCATTTT
1 TAGTCACC-AACTATTAGTAAATATCATTTT
* * * *
63275112 TGGTTACTTAACTATTAGTAAATATCCTTTT
1 TAGTCAC-CAACTATTAGTAAATATCATTTT
63275143 TAGTCATCCAACTAT
1 TAGTCA-CCAACTAT
63275158 AAAAATTACA
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
31 35 0.97
32 1 0.03
ACGTcount: A:0.31, C:0.17, G:0.08, T:0.44
Consensus pattern (30 bp):
TAGTCACCAACTATTAGTAAATATCATTTT
Found at i:63279286 original size:19 final size:20
Alignment explanation
Indices: 63279262--63279300 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
63279252 TCTTATTTTT
63279262 TATTTGTTTTT-TGTTTTAA
1 TATTTGTTTTTATGTTTTAA
63279281 TATTTGTTTTTATGTTTTAA
1 TATTTGTTTTTATGTTTTAA
63279301 ATGTATTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.18, C:0.00, G:0.10, T:0.72
Consensus pattern (20 bp):
TATTTGTTTTTATGTTTTAA
Found at i:63279318 original size:25 final size:23
Alignment explanation
Indices: 63279262--63279326 Score: 66
Period size: 19 Copynumber: 2.9 Consensus size: 23
63279252 TCTTATTTTT
*
63279262 TATTTGTTTTT-TGTTTT-AA--
1 TATTTGTTTTTATATTTTAAATG
*
63279281 TATTTGTTTTTATGTTTTAAATG
1 TATTTGTTTTTATATTTTAAATG
63279304 TATTTGATTTATTATATTTTAAA
1 TATTTG-TTT-TTATATTTTAAA
63279327 GTTTTTTTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
19 11 0.28
20 6 0.15
21 2 0.05
23 6 0.15
24 3 0.08
25 11 0.28
ACGTcount: A:0.25, C:0.00, G:0.09, T:0.66
Consensus pattern (23 bp):
TATTTGTTTTTATATTTTAAATG
Found at i:63281969 original size:13 final size:12
Alignment explanation
Indices: 63281946--63282008 Score: 55
Period size: 12 Copynumber: 5.4 Consensus size: 12
63281936 AGTAATTTTA
63281946 TATTAAAATTAT
1 TATTAAAATTAT
63281958 TATT-AAA-TAT
1 TATTAAAATTAT
63281968 TATTAATAATTA-
1 TATTAA-AATTAT
*
63281980 TATTAAGAA-TGT
1 TATTAA-AATTAT
63281992 TATT-AAATTAT
1 TATTAAAATTAT
63282003 ATATTA
1 -TATTA
63282009 TTTTATTAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 13
0.72 0.05 0.23
Matches are distributed among these distances:
10 9 0.22
11 8 0.20
12 22 0.54
13 2 0.05
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (12 bp):
TATTAAAATTAT
Found at i:63281973 original size:22 final size:23
Alignment explanation
Indices: 63281946--63282008 Score: 69
Period size: 22 Copynumber: 2.7 Consensus size: 23
63281936 AGTAATTTTA
63281946 TATTAAAATTATTATTA-AATAT
1 TATTAAAATTATTATTAGAATAT
*
63281968 TATTAATAATTA-TATTAAGAATGT
1 TATTAA-AATTATTATT-AGAATAT
63281992 TATT-AAATTATATATTA
1 TATTAAAATTAT-TATTA
63282009 TTTTATTAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
22 15 0.43
23 8 0.23
24 12 0.34
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (23 bp):
TATTAAAATTATTATTAGAATAT
Found at i:63282116 original size:25 final size:26
Alignment explanation
Indices: 63282067--63282117 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
63282057 TATTTTATTT
*
63282067 TTATTAAAATATATTTAACAATAATC
1 TTATTAAAATATATATAACAATAATC
*
63282093 TTATTAAAATTTA-ATAACAATAATC
1 TTATTAAAATATATATAACAATAATC
63282118 ATCTACCTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 11 0.48
26 12 0.52
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (26 bp):
TTATTAAAATATATATAACAATAATC
Found at i:63282241 original size:44 final size:46
Alignment explanation
Indices: 63282190--63282282 Score: 120
Period size: 44 Copynumber: 2.1 Consensus size: 46
63282180 TACAACATTT
*
63282190 ATTCCATTCAATCAAACACA-AGAATT-CT-ATTACAGCTCTATTCC
1 ATTCCATTCAACCAAACA-ATAGAATTACTGATTACAGCTCTATTCC
* * *
63282234 ATTCCATTCAACCAAACAATTGAATTATTGATTACAGTTCTATTCC
1 ATTCCATTCAACCAAACAATAGAATTACTGATTACAGCTCTATTCC
63282280 ATT
1 ATT
63282283 ACAGTGAACG
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
43 1 0.02
44 22 0.52
45 1 0.02
46 18 0.43
ACGTcount: A:0.35, C:0.24, G:0.05, T:0.35
Consensus pattern (46 bp):
ATTCCATTCAACCAAACAATAGAATTACTGATTACAGCTCTATTCC
Found at i:63283840 original size:3 final size:3
Alignment explanation
Indices: 63283816--63283957 Score: 97
Period size: 3 Copynumber: 46.3 Consensus size: 3
63283806 TGGATTGCTA
* * * * *
63283816 ATT AAT ATT ATC ATT GTT ATT ATT ATT CTT ACT ATT ATAT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT
* * * * * * * *
63283862 GTT ATT ATT CTT ACT ATT ATT ATT ATC GTT ACT ATT TTT ATT ACT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * *
63283910 ATT -TAT ATAT ATT ATT ATT ACT ATT ATT TTT CACT ATT ATT ATT ATT
1 ATT AT-T AT-T ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT ATT ATT
63283957 A
1 A
63283958 GAATTAAGTG
Statistics
Matches: 103, Mismatches: 32, Indels: 8
0.72 0.22 0.06
Matches are distributed among these distances:
2 1 0.01
3 93 0.90
4 9 0.09
ACGTcount: A:0.30, C:0.08, G:0.02, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:63283928 original size:25 final size:28
Alignment explanation
Indices: 63283833--63283957 Score: 112
Period size: 28 Copynumber: 4.5 Consensus size: 28
63283823 TTATCATTGT
* * * *
63283833 TATTATTATTCTTACTATTATATATTAT
1 TATTATTATTATTACTATTATTTATCAC
* * **
63283861 TGTTATTATTCTTACTATTATTATTATCGT
1 TATTATTATTATTACTATTA-T-TTATCAC
* *
63283891 TACTATTTTTATTACTATTATTTAT-A-
1 TATTATTATTATTACTATTATTTATCAC
*
63283917 TA-TATTATTATTACTATTATTTTTCAC
1 TATTATTATTATTACTATTATTTATCAC
63283944 TATTATTATTATTA
1 TATTATTATTATTA
63283958 GAATTAAGTG
Statistics
Matches: 81, Mismatches: 11, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
25 20 0.25
26 3 0.04
27 2 0.02
28 34 0.42
29 2 0.02
30 20 0.25
ACGTcount: A:0.30, C:0.08, G:0.02, T:0.61
Consensus pattern (28 bp):
TATTATTATTATTACTATTATTTATCAC
Found at i:63284283 original size:11 final size:12
Alignment explanation
Indices: 63284267--63284297 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
63284257 TTGTGTGTTC
63284267 TTTATTTTA-TT
1 TTTATTTTATTT
63284278 TTTATTTTATTT
1 TTTATTTTATTT
63284290 TTTATTTT
1 TTTATTTT
63284298 CACAAATTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 9 0.47
12 10 0.53
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTATTTTATTT
Found at i:63288740 original size:14 final size:14
Alignment explanation
Indices: 63288721--63288747 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
63288711 GTTCTTTATT
63288721 TTATTTTTATTTTA
1 TTATTTTTATTTTA
63288735 TTATTTTTATTTT
1 TTATTTTTATTTT
63288748 CACAATTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (14 bp):
TTATTTTTATTTTA
Found at i:63289835 original size:46 final size:46
Alignment explanation
Indices: 63289765--63289945 Score: 247
Period size: 46 Copynumber: 3.9 Consensus size: 46
63289755 TTTGACATGA
* * * * ** *
63289765 TGCCATAGTGTCTTTCAACTATGGTATTACTCATTTTC-TGCCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATATCACGT
*
63289811 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
*
63289857 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* *
63289903 TGCCATGGCATCTTTCAACCATGGTCTTACACATTTCATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCA
63289946 GAGAGCACAC
Statistics
Matches: 123, Mismatches: 11, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
45 4 0.03
46 119 0.97
ACGTcount: A:0.22, C:0.24, G:0.13, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
Found at i:63303877 original size:88 final size:88
Alignment explanation
Indices: 63303723--63304137 Score: 611
Period size: 88 Copynumber: 4.7 Consensus size: 88
63303713 AATCTCCACT
* * *
63303723 AGCCTTAACCCCCTAAGTAGTAGGGCAACATGCTG-GGAATTACAGATCTTATCTCCCTAAGTAG
1 AGCCTTAACCCCCTAAGTAGTAGGGCAACAGGCTGAAG-ATTACAGATCTTATCTCCCTAAGCAG
* *
63303787 TAGTGGAATAGATCGAAGACGGTG
65 TAGTGGAGTAGATCGAAGACAGTG
* * **
63303811 AGCCTTAAACCCCTAAGTAGTAGGGCAACAGGCTGAAGATTACAGATATTATCTCTTTAAGCAGT
1 AGCCTTAACCCCCTAAGTAGTAGGGCAACAGGCTGAAGATTACAGATCTTATCTCCCTAAGCAGT
63303876 AGTGGAGTAGATCGAAGAC-GATG
66 AGTGGAGTAGATCGAAGACAG-TG
* * *
63303899 AGCCTTAACCCCTTAAGCAGTAGGGCAACAGGCTGAAGATTACAGATCTTATCTCCCTAAGTAGT
1 AGCCTTAACCCCCTAAGTAGTAGGGCAACAGGCTGAAGATTACAGATCTTATCTCCCTAAGCAGT
* *
63303964 AGTGGAGCAGATCGAAGACAGTA
66 AGTGGAGTAGATCGAAGACAGTG
* * *
63303987 AGCCTTAACCCCCTAAGTAGTAGGGAAACATGCTGGAA-ATTACAGATCTTATCTCTCTAAGCAG
1 AGCCTTAACCCCCTAAGTAGTAGGGCAACAGGCT-GAAGATTACAGATCTTATCTCCCTAAGCAG
63304051 TAGTGGAGTAGATCGAAGACAGTG
65 TAGTGGAGTAGATCGAAGACAGTG
* *
63304075 AGCCTTAACCCCCTAAGCAGTAGGGCAACAAGCTGAAGATTACAGATCTTATCTCCCTAAGCA
1 AGCCTTAACCCCCTAAGTAGTAGGGCAACAGGCTGAAGATTACAGATCTTATCTCCCTAAGCA
63304138 ACTGTAACAC
Statistics
Matches: 293, Mismatches: 29, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
87 4 0.01
88 284 0.97
89 5 0.02
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.23
Consensus pattern (88 bp):
AGCCTTAACCCCCTAAGTAGTAGGGCAACAGGCTGAAGATTACAGATCTTATCTCCCTAAGCAGT
AGTGGAGTAGATCGAAGACAGTG
Found at i:63303965 original size:44 final size:43
Alignment explanation
Indices: 63303733--63304135 Score: 157
Period size: 44 Copynumber: 9.2 Consensus size: 43
63303723 AGCCTTAACC
* *
63303733 CCCTAAGTAGTAGGGCAACATGCTGGGA-ATTACAGATCTTATCT
1 CCCTAAGTAGTAGGG-AACA-GCTCGAAGATTACAGATCTTATCT
* * * * * *
63303777 CCCTAAGTAGTAGTGGAATAGATCGAAGACGGT-GAG-CCTTAAAC-
1 CCCTAAGTAGTAG-GGAACAGCTCGAAGA--TTACAGATCTT-ATCT
*
63303821 CCCTAAGTAGTAGGGCAACAGGCT-GAAGATTACAGATATTATCT
1 CCCTAAGTAGTAGGG-AACA-GCTCGAAGATTACAGATCTTATCT
** * ** * ** * * *
63303865 CTTTAAGCAGTAGTGGAGTAGATCGAAGACGA-TGAGCCTTAAC-
1 CCCTAAGTAGTAG-GGAACAGCTCGAAGATTACAGA-TCTTATCT
*
63303908 CCCTTAAGCAGTAGGGCAACAGGCT-GAAGATTACAGATCTTATCT
1 CCC-TAAGTAGTAGGG-AACA-GCTCGAAGATTACAGATCTTATCT
* * * * * *
63303953 CCCTAAGTAGTAGTGGAGCAGATCGAAGACAGTA-AG-CCTTAACC
1 CCCTAAGTAGTAG-GGAACAGCTCGAAG--ATTACAGATCTTATCT
*
63303997 CCCTAAGTAGTAGGGAAACATGCTGGAA-ATTACAGATCTTATCT
1 CCCTAAGTAGTAGGG-AACA-GCTCGAAGATTACAGATCTTATCT
* * ** * * ** * * *
63304041 CTCTAAGCAGTAGTGGAGTAGATCGAAGA-CAGTGAGCCTTAACC
1 CCCTAAGTAGTAG-GGAACAGCTCGAAGATTACAGA-TCTTATCT
*
63304085 CCCTAAGCAGTAGGGCAACAAGCT-GAAGATTACAGATCTTATCT
1 CCCTAAGTAGTAGGG-AAC-AGCTCGAAGATTACAGATCTTATCT
63304129 CCCTAAG
1 CCCTAAG
63304136 CAACTGTAAC
Statistics
Matches: 254, Mismatches: 73, Indels: 64
0.65 0.19 0.16
Matches are distributed among these distances:
42 4 0.02
43 33 0.13
44 179 0.70
45 34 0.13
46 4 0.02
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.23
Consensus pattern (43 bp):
CCCTAAGTAGTAGGGAACAGCTCGAAGATTACAGATCTTATCT
Found at i:63305112 original size:42 final size:42
Alignment explanation
Indices: 63305048--63305174 Score: 152
Period size: 42 Copynumber: 3.0 Consensus size: 42
63305038 CTTCGTTTTC
* ** * *
63305048 TCGATGCTATAGTTCAACTATGGTGTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAACTATGGTCTTACACATATTCACAT-A
* *
63305091 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAACTATGGTCTTACACATATTCACATA
63305132 TCGATGCCATAGCCCAACTATGGTCTTACACGA-A-TCACATA
1 TCGATGCCATAGCCCAACTATGGTCTTACAC-ATATTCACATA
63305173 TC
1 TC
63305175 TTACTGATGC
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
41 10 0.14
42 61 0.84
43 2 0.03
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.31
Consensus pattern (42 bp):
TCGATGCCATAGCCCAACTATGGTCTTACACATATTCACATA
Found at i:63305200 original size:46 final size:46
Alignment explanation
Indices: 63305133--63305256 Score: 142
Period size: 47 Copynumber: 2.7 Consensus size: 46
63305123 ATTCATATAT
* * **
63305133 CGATGCCATAGCCCA-ACTATGGTCTTACACGAATCACATATCTTAC
1 CGATGCCATATCCCAGA-TATGGTCTTACACGAAGCACATATCACAC
* * * *
63305179 TGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACAC
1 CGATGCCATATCCCAGATATGGTCTTACAC-GAAGCACATATCACAC
*
63305226 CAATGCCATATCCCAGATATGGTCTTACACG
1 CGATGCCATATCCCAGATATGGTCTTACACG
63305257 GAAATCACTT
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
46 26 0.40
47 39 0.60
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (46 bp):
CGATGCCATATCCCAGATATGGTCTTACACGAAGCACATATCACAC
Found at i:63305324 original size:31 final size:31
Alignment explanation
Indices: 63305281--63305459 Score: 261
Period size: 31 Copynumber: 5.8 Consensus size: 31
63305271 CTTGTCACTT
* * *
63305281 GTAGCCGAAGCTACCACTATTCATTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
* *
63305312 GTAGCTGGAGCTACCATTTTTCACTGATCA-
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
63305342 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
* *
63305373 GTAGCCGGAACTACCAATTTTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
*
63305404 GTAGCCGGAACTACCACTTTTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
* *
63305435 GTAGCTGAAGCTACCACTTTTCACT
1 GTAGCCGGAGCTACCACTTTTCACT
63305460 TGTCATTTGT
Statistics
Matches: 134, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
30 28 0.21
31 106 0.79
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.28
Consensus pattern (31 bp):
GTAGCCGGAGCTACCACTTTTCACTGATCAG
Done.