Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 199 of 356
Found at i:64908333 original size:47 final size:47
Alignment explanation
Indices: 64908135--64908335 Score: 185
Period size: 47 Copynumber: 4.3 Consensus size: 47
64908125 GGGTTATGTA
* * * *
64908135 AGAGCCAATATAAGACCATGTCTGGGACATGCATCGGCATTGATATG
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGATATG
* * * *
64908182 AGGGCTAGT-TAAAGA-CATGTCTGGGACATGCATCAGCCAC-ATTATG
1 AGAGCCAGTGT-AAGACCATGTCTGGGACATGCATCGGCCTCGA-TATG
* * * * * *
64908228 ATAGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCGTAGAAAGG
1 AGAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGATATG
*
64908276 AGAGCCAGTGTAAGA-CATGTCTGGGACATGCATTGGCCTCGATGATG
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAT-ATG
* *
64908323 ATAGCTAGTGTAA
1 AGAGCCAGTGTAA
64908336 TACGTGTTTA
Statistics
Matches: 121, Mismatches: 26, Indels: 14
0.75 0.16 0.09
Matches are distributed among these distances:
45 1 0.01
46 45 0.37
47 52 0.43
48 22 0.18
49 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.23
Consensus pattern (47 bp):
AGAGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGATATG
Found at i:64922892 original size:25 final size:25
Alignment explanation
Indices: 64922837--64922909 Score: 76
Period size: 25 Copynumber: 2.9 Consensus size: 25
64922827 GTTCAGACCC
* * * *
64922837 ACAGATCATGTGAGTATACTGATTT
1 ACAGCTCATGTGAGCATACCGATCT
* *
64922862 ATAGCTCATGAGAGCATACCGATCT
1 ACAGCTCATGTGAGCATACCGATCT
64922887 ACAGCTCGA-GTGAGCATACCGAT
1 ACAGCTC-ATGTGAGCATACCGAT
64922910 TCACAACTTG
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
25 38 0.97
26 1 0.03
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.26
Consensus pattern (25 bp):
ACAGCTCATGTGAGCATACCGATCT
Found at i:64928767 original size:16 final size:16
Alignment explanation
Indices: 64928746--64928776 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
64928736 GTGAAACTGC
*
64928746 AAAGGCTGAAAAGTCG
1 AAAGGCTAAAAAGTCG
64928762 AAAGGCTAAAAAGTC
1 AAAGGCTAAAAAGTC
64928777 AAAAAGTGGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.13, G:0.26, T:0.13
Consensus pattern (16 bp):
AAAGGCTAAAAAGTCG
Found at i:64929280 original size:15 final size:15
Alignment explanation
Indices: 64929260--64929291 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
64929250 ATGTGTTAAA
*
64929260 TTGACGGTTTTGCCC
1 TTGACGATTTTGCCC
64929275 TTGACGATTTTGCCC
1 TTGACGATTTTGCCC
64929290 TT
1 TT
64929292 ATGTGGAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.09, C:0.25, G:0.22, T:0.44
Consensus pattern (15 bp):
TTGACGATTTTGCCC
Found at i:64929318 original size:42 final size:42
Alignment explanation
Indices: 64929234--64929318 Score: 98
Period size: 42 Copynumber: 2.0 Consensus size: 42
64929224 TGTGGCAAAA
* ** * *
64929234 TGACTATTTTACCCTTATGTGTTAAATTGACGGTTTTGCCCT
1 TGACGATTTTACCCTTATGTGGAAAAATGACGATTTTGCCCT
* * *
64929276 TGACGATTTTGCCCTTATGTGGAAAAATGACTATTTTTCCCT
1 TGACGATTTTACCCTTATGTGGAAAAATGACGATTTTGCCCT
64929318 T
1 T
64929319 ATGCGTTAAA
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.21, C:0.19, G:0.16, T:0.44
Consensus pattern (42 bp):
TGACGATTTTACCCTTATGTGGAAAAATGACGATTTTGCCCT
Found at i:64929333 original size:27 final size:27
Alignment explanation
Indices: 64929275--64929333 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 27
64929265 GGTTTTGCCC
*
64929275 TTGACGATTTTGCCCTTATGTGGAAAA
1 TTGACGATTTTGCCCTTATGCGGAAAA
* * * **
64929302 ATGACTATTTTTCCCTTATGCGTTAAA
1 TTGACGATTTTGCCCTTATGCGGAAAA
64929329 TTGAC
1 TTGAC
64929334 AGTTTTACCT
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.25, C:0.17, G:0.17, T:0.41
Consensus pattern (27 bp):
TTGACGATTTTGCCCTTATGCGGAAAA
Found at i:64929376 original size:27 final size:27
Alignment explanation
Indices: 64929282--64929377 Score: 93
Period size: 27 Copynumber: 3.6 Consensus size: 27
64929272 CCCTTGACGA
* *
64929282 TTTTGCCCTTATGTGGAAAAATGACTA
1 TTTTGCCCTTATGTGTAAAAATGACTG
* * * * *
64929309 TTTTTCCCTTATGCGTTAAATTGACAG
1 TTTTGCCCTTATGTGTAAAAATGACTG
* * *
64929336 TTTTACCTTTATGTGTCAAAATGACTG
1 TTTTGCCCTTATGTGTAAAAATGACTG
*
64929363 TTTTGCCCCTATGTG
1 TTTTGCCCTTATGTG
64929378 ATGTATGTTT
Statistics
Matches: 53, Mismatches: 16, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.23, C:0.18, G:0.17, T:0.43
Consensus pattern (27 bp):
TTTTGCCCTTATGTGTAAAAATGACTG
Found at i:64929806 original size:54 final size:54
Alignment explanation
Indices: 64929712--64929856 Score: 184
Period size: 54 Copynumber: 2.7 Consensus size: 54
64929702 TAAAATGATG
* * *
64929712 GTTTTACCCTTATGTGGAAAAAATGAATATTTTGTCCTTATGT-GTTAAATTGACG
1 GTTTCACCCTTATGTGG-AAAAATGAATATTTTGCCCTTAT-TCGTTAAATTGACA
* *
64929767 GTTTCGCCCTTATGTGGAAAAATGACTATTTTGCCCTTATTCGTTAAATTGACA
1 GTTTCACCCTTATGTGGAAAAATGAATATTTTGCCCTTATTCGTTAAATTGACA
* ** *
64929821 GTTTTACCCTTATGTGTCAAAATGATTATTTTGCCC
1 GTTTCACCCTTATGTGGAAAAATGAATATTTTGCCC
64929857 CGATGTGATG
Statistics
Matches: 79, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
53 1 0.01
54 63 0.80
55 15 0.19
ACGTcount: A:0.26, C:0.16, G:0.17, T:0.41
Consensus pattern (54 bp):
GTTTCACCCTTATGTGGAAAAATGAATATTTTGCCCTTATTCGTTAAATTGACA
Found at i:64929819 original size:27 final size:27
Alignment explanation
Indices: 64929713--64929856 Score: 112
Period size: 27 Copynumber: 5.3 Consensus size: 27
64929703 AAAATGATGG
* ** *
64929713 TTTTACCCTTATGTGGAAAAAATGAATA
1 TTTTGCCCTTATGT-GTTAAAATGACTA
* * **
64929741 TTTTGTCCTTATGTGTTAAATTGACGG
1 TTTTGCCCTTATGTGTTAAAATGACTA
* **
64929768 TTTCGCCCTTATGTGGAAAAATGACTA
1 TTTTGCCCTTATGTGTTAAAATGACTA
*
64929795 TTTTGCCCTTAT-TCGTTAAATTGAC-A
1 TTTTGCCCTTATGT-GTTAAAATGACTA
* * *
64929821 GTTTTACCCTTATGTGTCAAAATGATTA
1 -TTTTGCCCTTATGTGTTAAAATGACTA
64929849 TTTTGCCC
1 TTTTGCCC
64929857 CGATGTGATG
Statistics
Matches: 88, Mismatches: 24, Indels: 9
0.73 0.20 0.07
Matches are distributed among these distances:
26 2 0.02
27 72 0.82
28 14 0.16
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.42
Consensus pattern (27 bp):
TTTTGCCCTTATGTGTTAAAATGACTA
Found at i:64930218 original size:27 final size:27
Alignment explanation
Indices: 64930188--64930291 Score: 77
Period size: 27 Copynumber: 3.8 Consensus size: 27
64930178 CGTGTAGGGT
*
64930188 AAAATGATGGTTTTACCCTTATGTGGAA
1 AAAATGATGGTTTTGCCCTTATGTGG-A
* * **
64930216 AAAATGAAT-ATTTTGTCCTTATGTGTT
1 AAAATG-ATGGTTTTGCCCTTATGTGGA
* * *
64930243 AAATTGACGGTTTCGCCCTTATGTGGA
1 AAAATGATGGTTTTGCCCTTATGTGGA
* *
64930270 AAAATAACT-ATTTTGCCCTTAT
1 AAAATGA-TGGTTTTGCCCTTAT
64930292 TCGTTAAGTT
Statistics
Matches: 56, Mismatches: 17, Indels: 7
0.70 0.21 0.09
Matches are distributed among these distances:
26 1 0.02
27 34 0.61
28 19 0.34
29 2 0.04
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.39
Consensus pattern (27 bp):
AAAATGATGGTTTTGCCCTTATGTGGA
Found at i:64930298 original size:54 final size:53
Alignment explanation
Indices: 64930197--64930341 Score: 157
Period size: 54 Copynumber: 2.7 Consensus size: 53
64930187 TAAAATGATG
* * *
64930197 GTTTTACCCTTATGTGGAAAAAATGAATATTTTGTCCTTATGTGTTAAATTGACG
1 GTTTCACCCTTATGTGG-AAAAAT-AATATTTTGCCCTTATGTGTTAAATTGACA
* *
64930252 GTTTCGCCCTTATGTGGAAAAATAACTATTTTGCCCTTAT-TCGTTAAGTTGACA
1 GTTTCACCCTTATGTGGAAAAATAA-TATTTTGCCCTTATGT-GTTAAATTGACA
* ** *
64930306 GTTTTACCCTTATGTGTCAAAATGATTATTTTGCCC
1 GTTTCACCCTTATGTGGAAAAAT-AATATTTTGCCC
64930342 CGATGTGATG
Statistics
Matches: 77, Mismatches: 10, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
53 3 0.04
54 58 0.75
55 16 0.21
ACGTcount: A:0.26, C:0.16, G:0.17, T:0.41
Consensus pattern (53 bp):
GTTTCACCCTTATGTGGAAAAATAATATTTTGCCCTTATGTGTTAAATTGACA
Found at i:64930653 original size:486 final size:486
Alignment explanation
Indices: 64929275--64931148 Score: 3065
Period size: 485 Copynumber: 3.8 Consensus size: 486
64929265 GGTTTTGCCC
* * * *
64929275 TTGACGATTTTGCCCTTATGTGGAAAAATGACTATTTTTCCCTTATGCGTTAAATTGACAGTTTT
1 TTGACGGTTTCGCCCTTATGTGGAAAAATGACTATTTTGCCCTTATTCGTTAAATTGACAGTTTT
* * * *
64929340 ACCTTTATGTGTCAAAATGACTGTTTTGCCCCTATGTGATGTATGTTTATATTTTAGCATGCTAT
66 ACCCTTATGTGTCAAAATGATTATTTTGCCCCGATGTGATGTATGTTTATATTTTAGCATGCTAT
* * * *
64929405 GTGTAACTCTATTGAGTACAGGTTTAATATTATGATATGACATGGCATGTTACATGATGCATTGC
131 GTGTAACTGTATTGAGTACATGTTTAATATTATGATATGACATGACATGTTGCATGATGCATTGC
*
64929470 ATGGGGATAGGCTTATTGGAGGAAGTGTACTGTACTGGCAGCTCTGCTGCAAATCACTGATGGCT
196 ATGGGGATGGGCTTATTGGAGGAAGTGTACTGTACTGGCAGCTCTGCTGCAAATCACTGATGGCT
*
64929535 CTAAGCCTATTATACTGGCAGCTCTGTTGTAATTACTGATTAGTGCTGCAACCGGTGCTATATTT
261 CTAAGCCTATTATACTGGCAGCTCTGTTGCAATTACTGATTAGTGCTGCAACCGGTGCTATATTT
*
64929600 GGAGTGTAGGGATGGGTGGGTCGATTTTATCCCCACAAGGAGTGTAGGGCTGGACGGAGTGGAGT
326 GAAGTGTAGGGATGGGTGGGTCGATTTTATCCCCACAAGGAGTGTAGGGCTGGACGGAGTGGAGT
64929665 GTAGAGAATGGATGGGTAGGATAATACCCGTGTAGGGTAAAATGATGGTTTTACCCTTATGTGGA
391 GTAGAGAATGGATGGGTAGGATAATACCCGTGTAGGGTAAAATGATGGTTTTACCCTTATGTGGA
64929730 AAAAATGAATATTTTGTCCTTATGTGTTAAA
456 AAAAATGAATATTTTGTCCTTATGTGTTAAA
64929761 TTGACGGTTTCGCCCTTATGTGGAAAAATGACTATTTTGCCCTTATTCGTTAAATTGACAGTTTT
1 TTGACGGTTTCGCCCTTATGTGGAAAAATGACTATTTTGCCCTTATTCGTTAAATTGACAGTTTT
64929826 ACCCTTATGTGTCAAAATGATTATTTTGCCCCGATGTGATGTATGTTTATA-TTTAGCATGCTAT
66 ACCCTTATGTGTCAAAATGATTATTTTGCCCCGATGTGATGTATGTTTATATTTTAGCATGCTAT
*
64929890 GTGTAACTGTATTGAGTACATGTTTAATATTATGATATGACATGACATGTTGCATGGTGCATTGC
131 GTGTAACTGTATTGAGTACATGTTTAATATTATGATATGACATGACATGTTGCATGATGCATTGC
* * *
64929955 ATGGGGATGGGCTTATTGGATGAAGTGTATTGTACTGGCAGCTCTGCTGCAAATTACTGATGGCT
196 ATGGGGATGGGCTTATTGGAGGAAGTGTACTGTACTGGCAGCTCTGCTGCAAATCACTGATGGCT
* *
64930020 CTAAGACTATTATACTGGCAGCTCTGTTGTAATTACTGATTAGTGCTGCAACCGGTGCTATATTT
261 CTAAGCCTATTATACTGGCAGCTCTGTTGCAATTACTGATTAGTGCTGCAACCGGTGCTATATTT
* *
64930085 GGATTGTAGGGATGGGTGGGTCGATTTTATCCCCACAAGGAGTGTAGGGCTGGACGGAGTGGAGT
326 GAAGTGTAGGGATGGGTGGGTCGATTTTATCCCCACAAGGAGTGTAGGGCTGGACGGAGTGGAGT
64930150 GTAGAGAATGGATGGGTAGGATAATACCCGTGTAGGGTAAAATGATGGTTTTACCCTTATGTGGA
391 GTAGAGAATGGATGGGTAGGATAATACCCGTGTAGGGTAAAATGATGGTTTTACCCTTATGTGGA
64930215 AAAAATGAATATTTTGTCCTTATGTGTTAAA
456 AAAAATGAATATTTTGTCCTTATGTGTTAAA
* *
64930246 TTGACGGTTTCGCCCTTATGTGGAAAAATAACTATTTTGCCCTTATTCGTTAAGTTGACAGTTTT
1 TTGACGGTTTCGCCCTTATGTGGAAAAATGACTATTTTGCCCTTATTCGTTAAATTGACAGTTTT
64930311 ACCCTTATGTGTCAAAATGATTATTTTGCCCCGATGTGATGTATGTTTATATTTTAGCATGCTAT
66 ACCCTTATGTGTCAAAATGATTATTTTGCCCCGATGTGATGTATGTTTATATTTTAGCATGCTAT
*
64930376 GTGTAACTGTATTGAGTACATGTTTAATATTATGATATGACATGACATGTTGCATGGTGCATTGC
131 GTGTAACTGTATTGAGTACATGTTTAATATTATGATATGACATGACATGTTGCATGATGCATTGC
* *
64930441 ATAGGGATGGGCTTATTGGAGGAAGTGTATTGTACTGGCAGCTCTGCTGCAAATCACTGATGGCT
196 ATGGGGATGGGCTTATTGGAGGAAGTGTACTGTACTGGCAGCTCTGCTGCAAATCACTGATGGCT
64930506 CTAAGCCTATTATACTGGCAGCTCTGTTGCAATTACTGATTAGTGCTGCAACCGGTGCTATATTT
261 CTAAGCCTATTATACTGGCAGCTCTGTTGCAATTACTGATTAGTGCTGCAACCGGTGCTATATTT
* * * *
64930571 GAAGTGTAGGGATGAGTGGGTCGATTTTATCCCCACATGGAGTGTAGGGCTGGACGAAGTGAAGT
326 GAAGTGTAGGGATGGGTGGGTCGATTTTATCCCCACAAGGAGTGTAGGGCTGGACGGAGTGGAGT
* * * *
64930636 GTAGAGGATGGATGGGTAGGATAATACCCGTGTAGGGTAAAATGATAGTTTTGCCCTTGTGTGG-
391 GTAGAGAATGGATGGGTAGGATAATACCCGTGTAGGGTAAAATGATGGTTTTACCCTTATGTGGA
* * *
64930700 CAAAATGACTATTTTGCCCTTATGTGTTAAA
456 AAAAATGAATATTTTGTCCTTATGTGTTAAA
* * * * * *
64930731 TTGACAGTTTCACTCC-TATGTGGAAAAATGTCTATTTTTCCCTTATACGTTAAATTGACGGTTT
1 TTGACGGTTTCGC-CCTTATGTGGAAAAATGACTATTTTGCCCTTATTCGTTAAATTGACAGTTT
* * **
64930795 TACCTTTATGTGTCAAAATGATTGTTTTGCCCTTATGTGATGTATGTTTATATTTTAGCATGCTA
65 TACCCTTATGTGTCAAAATGATTATTTTGCCCCGATGTGATGTATGTTTATATTTTAGCATGCTA
64930860 TGTGTAACTGTATTGAGTACATGTTTAATATTATGATATGACATGACATGTTGCATGATGCATTG
130 TGTGTAACTGTATTGAGTACATGTTTAATATTATGATATGACATGACATGTTGCATGATGCATTG
* * *
64930925 CATGGGGATGAGGTTATATATGATTGAAGGAAGTGTACTATACTGGCAACTCTGCTGCAAATCAC
195 CATGGGGATG-GGCT-TAT-TG---G-AGGAAGTGTACTGTACTGGCAGCTCTGCTGCAAATCAC
* * * * * *
64930990 TGATGGCCCTAAGCCTATCATATTGGCAGCCCTGATGCAATTACTGATTAGTGCTACAACCGGTG
253 TGATGGCTCTAAGCCTATTATACTGGCAGCTCTGTTGCAATTACTGATTAGTGCTGCAACCGGTG
* * * * *
64931055 CTATATTT-AAGTGTAGGGATGGGTGGGTCGATTTTATCCTCATATGGAGTGTAGGGCTAGATGG
318 CTATATTTGAAGTGTAGGGATGGGTGGGTCGATTTTATCCCCACAAGGAGTGTAGGGCTGGACGG
64931119 AGTGGAGTGTAGA-AGATGGATGGGTAGGAT
383 AGTGGAGTGTAGAGA-ATGGATGGGTAGGAT
64931149 TTTCTGTTCG
Statistics
Matches: 1307, Mismatches: 71, Indels: 15
0.94 0.05 0.01
Matches are distributed among these distances:
485 687 0.53
486 435 0.33
487 3 0.00
488 2 0.00
491 78 0.06
492 102 0.08
ACGTcount: A:0.25, C:0.14, G:0.25, T:0.35
Consensus pattern (486 bp):
TTGACGGTTTCGCCCTTATGTGGAAAAATGACTATTTTGCCCTTATTCGTTAAATTGACAGTTTT
ACCCTTATGTGTCAAAATGATTATTTTGCCCCGATGTGATGTATGTTTATATTTTAGCATGCTAT
GTGTAACTGTATTGAGTACATGTTTAATATTATGATATGACATGACATGTTGCATGATGCATTGC
ATGGGGATGGGCTTATTGGAGGAAGTGTACTGTACTGGCAGCTCTGCTGCAAATCACTGATGGCT
CTAAGCCTATTATACTGGCAGCTCTGTTGCAATTACTGATTAGTGCTGCAACCGGTGCTATATTT
GAAGTGTAGGGATGGGTGGGTCGATTTTATCCCCACAAGGAGTGTAGGGCTGGACGGAGTGGAGT
GTAGAGAATGGATGGGTAGGATAATACCCGTGTAGGGTAAAATGATGGTTTTACCCTTATGTGGA
AAAAATGAATATTTTGTCCTTATGTGTTAAA
Found at i:64930704 original size:27 final size:27
Alignment explanation
Indices: 64930674--64930833 Score: 83
Period size: 27 Copynumber: 5.9 Consensus size: 27
64930664 CGTGTAGGGT
*
64930674 AAAATGA-TAGTTTTGCCCTTGTGTGGC
1 AAAATGACTA-TTTTGCCCTTATGTGGC
**
64930701 AAAATGACTATTTTGCCCTTATGTGTT
1 AAAATGACTATTTTGCCCTTATGTGGC
* * * *
64930728 AAATTGAC-AGTTT-CACTCCTATGTGGA
1 AAAATGACTATTTTGC-C-CTTATGTGGC
* * ** **
64930755 AAAATGTCTATTTTTCCCTTATACGTT
1 AAAATGACTATTTTGCCCTTATGTGGC
* ** * * *
64930782 AAATTGACGGTTTTACCTTTATGTGTC
1 AAAATGACTATTTTGCCCTTATGTGGC
* *
64930809 AAAATGATTGTTTTGCCCTTATGTG
1 AAAATGACTATTTTGCCCTTATGTG
64930834 ATGTATGTTT
Statistics
Matches: 98, Mismatches: 30, Indels: 10
0.71 0.22 0.07
Matches are distributed among these distances:
25 1 0.01
26 5 0.05
27 84 0.86
28 7 0.07
29 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.17, T:0.42
Consensus pattern (27 bp):
AAAATGACTATTTTGCCCTTATGTGGC
Found at i:64930766 original size:54 final size:54
Alignment explanation
Indices: 64930695--64930833 Score: 156
Period size: 54 Copynumber: 2.6 Consensus size: 54
64930685 TTTGCCCTTG
*
64930695 TGTGGCAAAATGACTATTTTGCCCTTATGTGTTAAATTGACAGTTTCA-CTCCTA
1 TGTGGCAAAATGTCTATTTTGCCCTTATGTGTTAAATTGACAGTTTCACCT-CTA
* * ** * * *
64930749 TGTGGAAAAATGTCTATTTTTCCCTTATACGTTAAATTGACGGTTTTACCTTTA
1 TGTGGCAAAATGTCTATTTTGCCCTTATGTGTTAAATTGACAGTTTCACCTCTA
* *
64930803 TGTGTCAAAATGAT-TGTTTTGCCCTTATGTG
1 TGTGGCAAAATG-TCTATTTTGCCCTTATGTG
64930834 ATGTATGTTT
Statistics
Matches: 69, Mismatches: 14, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
54 66 0.96
55 3 0.04
ACGTcount: A:0.24, C:0.16, G:0.17, T:0.42
Consensus pattern (54 bp):
TGTGGCAAAATGTCTATTTTGCCCTTATGTGTTAAATTGACAGTTTCACCTCTA
Found at i:64938791 original size:6 final size:6
Alignment explanation
Indices: 64938761--64938866 Score: 74
Period size: 6 Copynumber: 17.3 Consensus size: 6
64938751 AAGAAACATT
* * *
64938761 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAAA ATCAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * * *
64938809 ATTAG- GTGACAGA ATTAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA
1 ATCAGA AT--CAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
64938859 ATCAGA AT
1 ATCAGA AT
64938867 GTGAATGCAA
Statistics
Matches: 76, Mismatches: 16, Indels: 16
0.70 0.15 0.15
Matches are distributed among these distances:
5 4 0.05
6 64 0.84
7 6 0.08
8 2 0.03
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:64938831 original size:31 final size:31
Alignment explanation
Indices: 64938787--64938866 Score: 115
Period size: 31 Copynumber: 2.6 Consensus size: 31
64938777 AAATGAGAAT
* *
64938787 CAGAATCAAAATCAGAATCAGAATTAGGTGA
1 CAGAATCAAAATCAGAATCAGAATCAGGTAA
* * *
64938818 CAGAATTAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGAATCAGGTAA
64938849 CAGAATCAAAATCAGAAT
1 CAGAATCAAAATCAGAAT
64938867 GTGAATGCAA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (31 bp):
CAGAATCAAAATCAGAATCAGAATCAGGTAA
Found at i:64939033 original size:27 final size:26
Alignment explanation
Indices: 64938985--64939044 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
64938975 GTGAGGCTGC
*
64938985 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGACAAAGCCACCAGA-A
* * *
64939012 CAGATATTGTGGCGAGGCCACCAGAA
1 CAGATATTGTGACAAAGCCACCAGAA
64939038 CAGATAT
1 CAGATAT
64939045 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGACAAAGCCACCAGAA
Found at i:64939141 original size:67 final size:68
Alignment explanation
Indices: 64939012--64939153 Score: 205
Period size: 67 Copynumber: 2.1 Consensus size: 68
64939002 TCACCAGATA
* * *
64939012 CAGATATTGTGGCGAGGCCACCAGAACAGATATATATATGTGGTGAAGCCACCAGATTGCAGCGA
1 CAGATATTGTGACGAAGCCACCAGAACAG--A-ATATATGTGGTGAAGCCACCAAATTGCAGCGA
64939077 GGCTGC
63 GGCTGC
* *
64939083 CAGATATTGTGACGAAGTCACCAGAACAG-ATATATGTGGTGAGGCCACCAAATTGCAGCGAGGC
1 CAGATATTGTGACGAAGCCACCAGAACAGAATATATGTGGTGAAGCCACCAAATTGCAGCGAGGC
64939147 TGC
66 TGC
64939150 CAGA
1 CAGA
64939154 ACGCTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
67 40 0.61
71 26 0.39
ACGTcount: A:0.31, C:0.21, G:0.29, T:0.19
Consensus pattern (68 bp):
CAGATATTGTGACGAAGCCACCAGAACAGAATATATGTGGTGAAGCCACCAAATTGCAGCGAGGC
TGC
Found at i:64939563 original size:27 final size:27
Alignment explanation
Indices: 64939371--64939547 Score: 246
Period size: 27 Copynumber: 6.6 Consensus size: 27
64939361 ACACCCTAGA
*
64939371 GGTAAAATGGTAATTTTATAAATCGAG
1 GGTAAAACGGTAATTTTATAAATCGAG
*
64939398 GGTAAAACGGTAATTTTGTAAATCGAG
1 GGTAAAACGGTAATTTTATAAATCGAG
*
64939425 GGTAAAACGGTAATTTTGTAAATCGAG
1 GGTAAAACGGTAATTTTATAAATCGAG
** *
64939452 GGTAAAACAATAATTCTATAAATCGAG
1 GGTAAAACGGTAATTTTATAAATCGAG
** *
64939479 GGTAAAATAGTAATTTTATAAATCCAG
1 GGTAAAACGGTAATTTTATAAATCGAG
** *
64939506 GGTAAAATAGTAATTCTATAAATCGAG
1 GGTAAAACGGTAATTTTATAAATCGAG
64939533 GGTAAAACGGTAATT
1 GGTAAAACGGTAATT
64939548 CTGTAAATTG
Statistics
Matches: 136, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 136 1.00
ACGTcount: A:0.42, C:0.07, G:0.21, T:0.30
Consensus pattern (27 bp):
GGTAAAACGGTAATTTTATAAATCGAG
Found at i:64939589 original size:81 final size:81
Alignment explanation
Indices: 64939381--64939590 Score: 249
Period size: 81 Copynumber: 2.6 Consensus size: 81
64939371 GGTAAAATGG
* * * * * *
64939381 TAATTTTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTTTGTAA
1 TAATTCTATAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTATAA
64939446 ATCGAGGGTAAAACAA
66 ATCGAGGGTAAAACAA
* * *
64939462 TAATTCTATAAATCGAGGGTAAAATAGTAATTTTATAAATCCAGGGTAAAATAGTAATTCTATAA
1 TAATTCTATAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTATAA
**
64939527 ATCGAGGGTAAAACGG
66 ATCGAGGGTAAAACAA
* * * *** * *
64939543 TAATTCTGTAAATTGGGGGTACTTTGGTAATTTTACAAGTCGAGGGTA
1 TAATTCTATAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTA
64939591 TTTTAGTAAT
Statistics
Matches: 108, Mismatches: 21, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 108 1.00
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.31
Consensus pattern (81 bp):
TAATTCTATAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTATAA
ATCGAGGGTAAAACAA
Found at i:64947703 original size:21 final size:20
Alignment explanation
Indices: 64947673--64947711 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
64947663 CTGAACTGTT
64947673 GAAAAATTTC-AATGTTTTCA
1 GAAAAATTTCTAA-GTTTTCA
64947693 GAAAAATTTTCTAAGTTTT
1 GAAAAA-TTTCTAAGTTTT
64947712 TGATTTAGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 6 0.35
21 9 0.53
22 2 0.12
ACGTcount: A:0.38, C:0.08, G:0.10, T:0.44
Consensus pattern (20 bp):
GAAAAATTTCTAAGTTTTCA
Found at i:64952474 original size:43 final size:43
Alignment explanation
Indices: 64952413--64952567 Score: 238
Period size: 43 Copynumber: 3.6 Consensus size: 43
64952403 CTGGCATTAC
* *
64952413 GCCTGCTAGGCACGAAGGCTCGATTACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* * * *
64952456 GCCTGCTAGGCATGAAGGCCCGAATACATATCACTGGCATGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
64952499 GCCTGTTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
64952542 GCCTGCTAGGCACGAAGGCCCAAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
64952568 TAATACCAAC
Statistics
Matches: 99, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 99 1.00
ACGTcount: A:0.30, C:0.30, G:0.26, T:0.14
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:64952545 original size:86 final size:86
Alignment explanation
Indices: 64952400--64952567 Score: 273
Period size: 86 Copynumber: 2.0 Consensus size: 86
64952390 ACATATCATT
* * * *
64952400 TCACTGGCATTACGCCTGCTAGGCACGAAGGCTCGATTACACATCACCGGCACGAAGCCTGCTAG
1 TCACTGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAG
* *
64952465 GCATGAAGGCCCGAATACATA
66 GCACGAAGGCCCAAATACATA
*
64952486 TCACTGGCATGAAGCCTGTTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAG
1 TCACTGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAG
64952551 GCACGAAGGCCCAAATA
66 GCACGAAGGCCCAAATA
64952568 TAATACCAAC
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
86 75 1.00
ACGTcount: A:0.29, C:0.30, G:0.25, T:0.15
Consensus pattern (86 bp):
TCACTGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAG
GCACGAAGGCCCAAATACATA
Found at i:64952607 original size:38 final size:38
Alignment explanation
Indices: 64952565--64952663 Score: 135
Period size: 38 Copynumber: 2.6 Consensus size: 38
64952555 GAAGGCCCAA
* * *
64952565 ATATAATACCAACACTAGGCCTGTGGGATTTATCCCGG
1 ATATAATACCAACACGAAGCCTGTGGGATTTAACCCGG
*
64952603 ATATAATACCAGCACGAAGCCTGTGGGATTTAACCCGG
1 ATATAATACCAACACGAAGCCTGTGGGATTTAACCCGG
** *
64952641 ATATTTTACCAGCACGAAGCCTG
1 ATATAATACCAACACGAAGCCTG
64952664 CGAGTCTTTA
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 55 1.00
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.24
Consensus pattern (38 bp):
ATATAATACCAACACGAAGCCTGTGGGATTTAACCCGG
Found at i:64956951 original size:77 final size:77
Alignment explanation
Indices: 64956820--64956965 Score: 197
Period size: 77 Copynumber: 1.9 Consensus size: 77
64956810 TTAAGGAACA
* * * *
64956820 TTGATTTGGCTTCAGGCCATGATATTAGCACTTCGGGTGCAAGTTATACCGATTTGGGTTTGGGC
1 TTGATTTGGCTTCAGGCCATGATATCAGCACTTCGGATACAAGTTATACCGATTTGGCTTTGGGC
64956885 CATGAATATCGG
66 CATGAATATCGG
* * *
64956897 TTGATTTGGCTTCGGGCCATGATATCAGTACTTCGGATATAAG-T-TACCTTGATTTGGCTTTGG
1 TTGATTTGGCTTCAGGCCATGATATCAGCACTTCGGATACAAGTTATACC--GATTTGGCTTTGG
64956960 GCCATG
64 GCCATG
64956966 GTATAGGTAC
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
75 4 0.07
76 1 0.02
77 55 0.92
ACGTcount: A:0.20, C:0.17, G:0.27, T:0.36
Consensus pattern (77 bp):
TTGATTTGGCTTCAGGCCATGATATCAGCACTTCGGATACAAGTTATACCGATTTGGCTTTGGGC
CATGAATATCGG
Found at i:64961140 original size:45 final size:46
Alignment explanation
Indices: 64961040--64961147 Score: 139
Period size: 45 Copynumber: 2.4 Consensus size: 46
64961030 GCTACATCTC
* *
64961040 AGTGGTAGCTTCGGCTACAATATAGTGGTAGCTTTGGCTATAATAC
1 AGTGGTAGCTTCGGCTACAATATAGTGGTAGCTTTGGCTACAATAA
* **
64961086 AGTGGTAGCTTTGGCTACAATA-AGTGGTAGCTTCT-GCTACGTTAA
1 AGTGGTAGCTTCGGCTACAATATAGTGGTAGCTT-TGGCTACAATAA
*
64961131 AGTGATAGCTTCGGCTA
1 AGTGGTAGCTTCGGCTA
64961148 TATTACAGTG
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
45 32 0.59
46 22 0.41
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (46 bp):
AGTGGTAGCTTCGGCTACAATATAGTGGTAGCTTTGGCTACAATAA
Found at i:64961157 original size:23 final size:23
Alignment explanation
Indices: 64961039--64961157 Score: 132
Period size: 23 Copynumber: 5.2 Consensus size: 23
64961029 GGCTACATCT
64961039 CAGTGGTAGCTTCGGCTACAATA
1 CAGTGGTAGCTTCGGCTACAATA
* * *
64961062 TAGTGGTAGCTTTGGCTATAATA
1 CAGTGGTAGCTTCGGCTACAATA
*
64961085 CAGTGGTAGCTTTGGCTACAATA
1 CAGTGGTAGCTTCGGCTACAATA
* **
64961108 -AGTGGTAGCTTCTGCTACGTTA
1 CAGTGGTAGCTTCGGCTACAATA
* * * *
64961130 AAGTGATAGCTTCGGCTATATTA
1 CAGTGGTAGCTTCGGCTACAATA
64961153 CAGTG
1 CAGTG
64961158 TGGCACTTTG
Statistics
Matches: 81, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
22 18 0.22
23 63 0.78
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (23 bp):
CAGTGGTAGCTTCGGCTACAATA
Found at i:64963598 original size:39 final size:39
Alignment explanation
Indices: 64963554--64963678 Score: 178
Period size: 39 Copynumber: 3.2 Consensus size: 39
64963544 TATGAGATTG
*
64963554 AAAATATCCAGACATGAGGTCCTCAGGCTATATGCTGGA
1 AAAATATCCAGACATGAGGTCCGCAGGCTATATGCTGGA
* *
64963593 AAAATATCCAGACATGAGATCCGCAGGCTATATGCTAGA
1 AAAATATCCAGACATGAGGTCCGCAGGCTATATGCTGGA
* * * **
64963632 AATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGA
1 AAAATATCCAGACATGAGGTCCGCAGGCTATATGCTGGA
64963671 AAAATATC
1 AAAATATC
64963679 TGGGTTAAAG
Statistics
Matches: 75, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 75 1.00
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.22
Consensus pattern (39 bp):
AAAATATCCAGACATGAGGTCCGCAGGCTATATGCTGGA
Found at i:64971056 original size:39 final size:39
Alignment explanation
Indices: 64971012--64971136 Score: 178
Period size: 39 Copynumber: 3.2 Consensus size: 39
64971002 TATGAGATTG
* *
64971012 AAAATATCCAGACATGAGGTCCTCAGGCTATATGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
* *
64971051 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTAGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
* * **
64971090 AATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
64971129 AAAATATC
1 AAAATATC
64971137 TGGGTTAAAG
Statistics
Matches: 75, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 75 1.00
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.22
Consensus pattern (39 bp):
AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
Found at i:64973380 original size:31 final size:31
Alignment explanation
Indices: 64973342--64973414 Score: 137
Period size: 31 Copynumber: 2.4 Consensus size: 31
64973332 GATGTTTTTA
64973342 ACACGGGCGTGTATGACCACACGGCCTGCCC
1 ACACGGGCGTGTATGACCACACGGCCTGCCC
*
64973373 ACACGGGCGTGTGTGACCACACGGCCTGCCC
1 ACACGGGCGTGTATGACCACACGGCCTGCCC
64973404 ACACGGGCGTG
1 ACACGGGCGTG
64973415 GCCCATGTCA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.18, C:0.37, G:0.33, T:0.12
Consensus pattern (31 bp):
ACACGGGCGTGTATGACCACACGGCCTGCCC
Found at i:64976649 original size:48 final size:48
Alignment explanation
Indices: 64976576--64976961 Score: 628
Period size: 48 Copynumber: 8.0 Consensus size: 48
64976566 CAAGACAAAT
* * * *
64976576 ATATATATGTGTGGTAAATCTGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
64976624 ATATGTATATATGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
64976672 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
64976720 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
64976768 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * * *
64976816 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
64976864 ATATGAATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * * *
64976912 ATATGTATATTTGGTAAAGCTGAATGGCTAATGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
64976960 AT
1 AT
64976962 GTGTGTATAT
Statistics
Matches: 318, Mismatches: 20, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 318 1.00
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:64977157 original size:37 final size:37
Alignment explanation
Indices: 64977102--64977315 Score: 374
Period size: 37 Copynumber: 5.8 Consensus size: 37
64977092 GGAAATATAT
*
64977102 TCCGGGTAAGACCCGATGACTACGTGCGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
64977139 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
64977176 TTCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
64977213 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
64977250 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
64977287 TCCGGGTAAGACCCGATAACTGCGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
64977316 GGACTATTCG
Statistics
Matches: 169, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 169 1.00
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:64978878 original size:40 final size:40
Alignment explanation
Indices: 64978595--64978864 Score: 416
Period size: 40 Copynumber: 6.8 Consensus size: 40
64978585 GAGAATTGAG
*
64978595 AGTGATATATTCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
64978635 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
64978675 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
64978715 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
64978755 AGTGATATACCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * * *
64978795 AGAGTTATA-CCAGGGTTAAGTCCGGAAGAACATTCGTGCT
1 AGTGATATATCC-GGGCTAAGTCCCGAAGAGCATTCGTGCT
* * **
64978835 GGTGTTATATCCGGGCTCGGTCCCGAAGAG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAG
64978865 AAATCATGCT
Statistics
Matches: 212, Mismatches: 16, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 2 0.01
40 208 0.98
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:64982932 original size:48 final size:48
Alignment explanation
Indices: 64982861--64983204 Score: 566
Period size: 48 Copynumber: 7.2 Consensus size: 48
64982851 CAAGACAAAT
* * * *
64982861 ATATATATGTGTGGTAATGCCGAACGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
64982909 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
64982957 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATCTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
64983005 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
64983053 ATA--TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
64983099 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * *
64983147 ATATGTATATTTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
64983195 ATGTGTATAT
1 ATATGTATAT
64983205 ATTGTGGCCG
Statistics
Matches: 279, Mismatches: 15, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
46 44 0.16
48 235 0.84
ACGTcount: A:0.34, C:0.07, G:0.27, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:64983128 original size:142 final size:143
Alignment explanation
Indices: 64982861--64983196 Score: 575
Period size: 142 Copynumber: 2.3 Consensus size: 143
64982851 CAAGACAAAT
* * * *
64982861 ATATATATGTGTGGTAATGCCGAACGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATA-GTATATGTGGTAA
*
64982926 AGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGT
65 AGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGT
64982991 GAAATATCTATGAG
130 GAAATATCTATGAG
64983005 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATA-TATATGTGGTAAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATAGTATATGTGGTAAA
64983069 GCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
66 GCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
*
64983134 AAATATGTATGAG
131 AAATATCTATGAG
* * *
64983147 ATATGTATATTTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAGAT
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT
64983197 GTGTATATAT
Statistics
Matches: 183, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
142 136 0.74
144 47 0.26
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (143 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATAGTATATGTGGTAAA
GCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
AAATATCTATGAG
Found at i:64983390 original size:37 final size:37
Alignment explanation
Indices: 64983337--64983513 Score: 309
Period size: 37 Copynumber: 4.8 Consensus size: 37
64983327 GGAAATATAT
64983337 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
64983374 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
64983411 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
64983448 TCCGGGTAAGACCCGATGACTACCTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
64983485 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
64983514 GGACTATTCG
Statistics
Matches: 134, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 134 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:64984998 original size:37 final size:37
Alignment explanation
Indices: 64984941--64985043 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
64984931 TGAATAGTCC
* *
64984941 CCACACGTAGTTATCAGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
64984978 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
64985015 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
64985044 ATATATTTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:64985267 original size:48 final size:48
Alignment explanation
Indices: 64985216--64985533 Score: 528
Period size: 48 Copynumber: 6.6 Consensus size: 48
64985206 GCCGAATCAC
* *
64985216 TAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* * *
64985264 TAGCCATTCGGCTTTACCACGTATACATATCTCATACATAATTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
64985312 TAGCCATTCGGCTTTACCACATATACATATCTCATACATAATTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* * *
64985360 TAGCCATTCGGCTTTACCGCTTAGACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
64985408 TAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
64985456 TAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
64985504 TAGCAATTCGGCTTTACCACATATACATAT
1 TAGCCATTCGGCTTTACCACATATACATAT
64985534 ATATTTATCT
Statistics
Matches: 257, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 257 1.00
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.34
Consensus pattern (48 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
Found at i:64992620 original size:18 final size:18
Alignment explanation
Indices: 64992595--64992644 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
64992585 TTGGGTTGTA
64992595 TGGG-CCACATGGGCGTG
1 TGGGCCCACATGGGCGTG
* ***
64992612 TTGGCCCACATAAACGTG
1 TGGGCCCACATGGGCGTG
64992630 TGGGCCCACATGGGC
1 TGGGCCCACATGGGC
64992645 TTGCATGATG
Statistics
Matches: 24, Mismatches: 8, Indels: 1
0.73 0.24 0.03
Matches are distributed among these distances:
17 3 0.12
18 21 0.88
ACGTcount: A:0.18, C:0.28, G:0.36, T:0.18
Consensus pattern (18 bp):
TGGGCCCACATGGGCGTG
Found at i:65005074 original size:27 final size:27
Alignment explanation
Indices: 65005044--65005458 Score: 512
Period size: 27 Copynumber: 15.4 Consensus size: 27
65005034 TAATAAAGAG
*
65005044 AAATTACCGAAACACCCTCAATTTGTA
1 AAATTACCGAAACACCCTCGATTTGTA
* * *
65005071 AAATTATCGAAACACCCTTGA-TTGTG
1 AAATTACCGAAACACCCTCGATTTGTA
** * *
65005097 AAATTACTAAAATACCCTCGATTTGTG
1 AAATTACCGAAACACCCTCGATTTGTA
* *
65005124 AAATTATCGAAACACCTTCGATTTGTA
1 AAATTACCGAAACACCCTCGATTTGTA
* * *
65005151 AAATTATCAAAACACCCTTGATTTGTA
1 AAATTACCGAAACACCCTCGATTTGTA
* *
65005178 AAATTACCGAAACACCCTCAAATTGTA
1 AAATTACCGAAACACCCTCGATTTGTA
* * * *
65005205 AAATTACTGAAATACCCTCAAATTGTA
1 AAATTACCGAAACACCCTCGATTTGTA
*
65005232 AAATTATCGAAACACCCTCGATTTG-A
1 AAATTACCGAAACACCCTCGATTTGTA
* * * *
65005258 AAATTACCAAAATACACTCGATTTGTG
1 AAATTACCGAAACACCCTCGATTTGTA
*
65005285 AAATTACAGAAACACCCTCGATTTGTA
1 AAATTACCGAAACACCCTCGATTTGTA
* *
65005312 AAATTACCGAAACACCTTTGATTTGTA
1 AAATTACCGAAACACCCTCGATTTGTA
*
65005339 AAATTACCGAAACACCCTCGACTTGTA
1 AAATTACCGAAACACCCTCGATTTGTA
65005366 AAATTACCGAAACACCCTCGATTTGTA
1 AAATTACCGAAACACCCTCGATTTGTA
*
65005393 AAATTACCGAAACACCCTCAATTTGTA
1 AAATTACCGAAACACCCTCGATTTGTA
* *
65005420 AAATTACTGAAACACCC-CTTATTTGTA
1 AAATTACCGAAACACCCTC-GATTTGTA
*
65005447 AAATTATCGAAA
1 AAATTACCGAAA
65005459 TAATCTTGTA
Statistics
Matches: 333, Mismatches: 52, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
26 43 0.13
27 290 0.87
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.29
Consensus pattern (27 bp):
AAATTACCGAAACACCCTCGATTTGTA
Found at i:65005309 original size:161 final size:161
Alignment explanation
Indices: 65005044--65005426 Score: 590
Period size: 161 Copynumber: 2.4 Consensus size: 161
65005034 TAATAAAGAG
* *
65005044 AAATTACCGAAACACCCTCAATTTGTAAAATTATCGAAACACCCTTGATTGTG-AAATTACTAAA
1 AAATTACCGAAACACCCTCAATTTGTAAAATTATCGAAACACCCTCGATT-TGAAAATTACCAAA
* * *
65005108 ATACCCTCGATTTGTGAAATTATCGAAACACCTTCGATTTGTAAAATTATCAAAACACCCTTGAT
65 ATACACTCGATTTGTGAAATTATCGAAACACCCTCGATTTGTAAAATTACCAAAACACCCTTGAT
65005173 TTGTAAAATTACCGAAACACCCTCAAATTGTA
130 TTGTAAAATTACCGAAACACCCTCAAATTGTA
* * *
65005205 AAATTACTGAAATACCCTCAAATTGTAAAATTATCGAAACACCCTCGATTTGAAAATTACCAAAA
1 AAATTACCGAAACACCCTCAATTTGTAAAATTATCGAAACACCCTCGATTTGAAAATTACCAAAA
* *
65005270 TACACTCGATTTGTGAAATTA-CAGAAACACCCTCGATTTGTAAAATTACCGAAACACCTTTGAT
66 TACACTCGATTTGTGAAATTATC-GAAACACCCTCGATTTGTAAAATTACCAAAACACCCTTGAT
* *
65005334 TTGTAAAATTACCGAAACACCCTCGACTTGTA
130 TTGTAAAATTACCGAAACACCCTCAAATTGTA
* * *
65005366 AAATTACCGAAACACCCTCGATTTGTAAAATTACCGAAACACCCTCAATTTGTAAAATTAC
1 AAATTACCGAAACACCCTCAATTTGTAAAATTATCGAAACACCCTCGATTTG-AAAATTAC
65005427 TGAAACACCC
Statistics
Matches: 201, Mismatches: 18, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
160 3 0.01
161 190 0.95
162 8 0.04
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.28
Consensus pattern (161 bp):
AAATTACCGAAACACCCTCAATTTGTAAAATTATCGAAACACCCTCGATTTGAAAATTACCAAAA
TACACTCGATTTGTGAAATTATCGAAACACCCTCGATTTGTAAAATTACCAAAACACCCTTGATT
TGTAAAATTACCGAAACACCCTCAAATTGTA
Found at i:65005473 original size:27 final size:27
Alignment explanation
Indices: 65005443--65005531 Score: 81
Period size: 27 Copynumber: 3.3 Consensus size: 27
65005433 ACCCCTTATT
*
65005443 TGTAAAATTATCGAAATAATCTTGTAG
1 TGTAAAATTATCGAAATAACCTTGTAG
* **
65005470 TGTAAAATTA-CTAAAATGCCCTTGTAG
1 TGTAAAATTATC-GAAATAACCTTGTAG
* * * *
65005497 TGTAAAATGATCGACATACCCCTGTAG
1 TGTAAAATTATCGAAATAACCTTGTAG
*
65005524 GGTAAAAT
1 TGTAAAAT
65005532 GATTGTTTTG
Statistics
Matches: 50, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
26 1 0.02
27 48 0.96
28 1 0.02
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.31
Consensus pattern (27 bp):
TGTAAAATTATCGAAATAACCTTGTAG
Found at i:65011406 original size:40 final size:40
Alignment explanation
Indices: 65011303--65011518 Score: 273
Period size: 40 Copynumber: 5.5 Consensus size: 40
65011293 CGGATGATAA
* *
65011303 CCGGGCTAAGTCCCGAAGGCATTTGTGC-TGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
65011342 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
65011381 CCGGGCTAAGTCCCGAAGGTATTTGTGTGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
65011421 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AT
* * *
65011462 -CGGGCTAAGTCCTGAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
65011501 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
65011519 TGCTTGGTTT
Statistics
Matches: 157, Mismatches: 14, Indels: 12
0.86 0.08 0.07
Matches are distributed among these distances:
38 17 0.11
39 44 0.28
40 95 0.61
41 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:65028151 original size:93 final size:93
Alignment explanation
Indices: 65028046--65028310 Score: 377
Period size: 93 Copynumber: 2.8 Consensus size: 93
65028036 GCCCATAAGT
* * * * **
65028046 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCATATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* * * *
65028111 CAAGCTTGGATGCCTAGTTACATCTGAC
66 CGAGTTTGGATGCCTAGTGACATCTCAC
* *
65028139 GAACTTGGACTCAACTCAACGAGTTCAGACGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
65028204 TGAGTTTGGATGCCTAGTGACATCTCAC
66 CGAGTTTGGATGCCTAGTGACATCTCAC
* * * *
65028232 GAACTCGAACTCAACTCAACGAGTTCAGATGTTCGCATCCATAAGTGAACTCGAACTTAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
65028297 CGAGTTTGGATGCC
66 CGAGTTTGGATGCC
65028311 CAAATATCTG
Statistics
Matches: 152, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 152 1.00
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTTGGATGCCTAGTGACATCTCAC
Found at i:65028209 original size:46 final size:46
Alignment explanation
Indices: 65028038--65028302 Score: 154
Period size: 46 Copynumber: 5.7 Consensus size: 46
65028028 TGTAACCCGC
* * * **
65028038 CCATAAGTGAACTC-AGACTCAACTCAACGAGCTCGGGCGTTCATAT
1 CCATAAGTGAACTCGA-ACTCAACTCAACGAGTTCAGACGTTCGCAT
* * * * *
65028084 CCATAAGTGAACTCGGACTCAACTCAACAAGCTTGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGAACTCAACTCAACGAG-TT-CA-GAC--GTTCGCAT
* * * *
65028134 -C-TGA-CGAACTTGGACTCAACTCAACGAGTTCAGACGTTCGCAT
1 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCAGACGTTCGCAT
* ** *
65028177 CCATAAGTGAACTC-AGACTCAACTCAATGAGTTTGGATGCCTAGT-GACAT
1 CCATAAGTGAACTCGA-ACTCAACTCAACGAGTTCAGA--CGT--TCG-CAT
* * *
65028227 -C-TCA-CGAACTCGAACTCAACTCAACGAGTTCAGATGTTCGCAT
1 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCAGACGTTCGCAT
*
65028270 CCATAAGTGAACTCGAACTTAACTCAACGAGTT
1 CCATAAGTGAACTCGAACTCAACTCAACGAGTT
65028303 TGGATGCCCA
Statistics
Matches: 166, Mismatches: 32, Indels: 42
0.69 0.13 0.17
Matches are distributed among these distances:
42 3 0.02
43 7 0.04
44 5 0.03
45 6 0.04
46 77 0.46
47 46 0.28
48 7 0.04
49 5 0.03
50 7 0.04
51 3 0.02
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.24
Consensus pattern (46 bp):
CCATAAGTGAACTCGAACTCAACTCAACGAGTTCAGACGTTCGCAT
Found at i:65030481 original size:49 final size:49
Alignment explanation
Indices: 65030308--65030539 Score: 293
Period size: 49 Copynumber: 4.7 Consensus size: 49
65030298 TCTATTGTGA
* * * * * *
65030308 GGTCGCATGTGTAGTACTAAGTGCTGGCTACTATGCGTACCCGAAAACTGT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-T
* * * * **
65030359 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* *
65030408 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
65030458 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* *
65030507 GGTCGCATGTGTAGTACTATGTGCAGGCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
65030540 TGCGTACCAG
Statistics
Matches: 161, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
49 79 0.49
50 46 0.29
51 36 0.22
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:65030494 original size:99 final size:100
Alignment explanation
Indices: 65030308--65030547 Score: 304
Period size: 99 Copynumber: 2.4 Consensus size: 100
65030298 TCTATTGTGA
* * * *
65030308 GGTCGCATGTGTAGTACTAAGTGCTGGCTACTATGCGTACCCGAAAACTGTGATCACGTGTGTAG
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTGATCACATGTGTAG
* **
65030373 TACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
66 TACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * * *
65030408 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAA-T-TGGTCACATGTGTA
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTGATCACATGTGTA
*
65030471 GTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
65 GTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
65030507 GGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACC
65030548 AGATAGCTTT
Statistics
Matches: 119, Mismatches: 20, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
98 35 0.29
99 44 0.37
100 1 0.01
101 39 0.33
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (100 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTGATCACATGTGTAG
TACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:65032641 original size:39 final size:39
Alignment explanation
Indices: 65032587--65032665 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
65032577 ATTCGGGATA
*
65032587 TCACAATCCCTTGCACAATGCAGTCTCTACTCTTACCCT
1 TCACAATCCCTTGCACAACGCAGTCTCTACTCTTACCCT
65032626 TCACAATCCCTTGCACAACGCAGTCTCTACTCTTACCCT
1 TCACAATCCCTTGCACAACGCAGTCTCTACTCTTACCCT
65032665 T
1 T
65032666 AGCATCCTTC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.23, C:0.39, G:0.08, T:0.30
Consensus pattern (39 bp):
TCACAATCCCTTGCACAACGCAGTCTCTACTCTTACCCT
Found at i:65032810 original size:27 final size:27
Alignment explanation
Indices: 65032780--65032909 Score: 136
Period size: 27 Copynumber: 4.8 Consensus size: 27
65032770 CCTAATAGAG
*
65032780 TATCTCGTGTTTAACATCCCATCAGAC
1 TATCTCATGTTTAACATCCCATCAGAC
* * *
65032807 TATCTCATGTTTACCATCTCATCAGGC
1 TATCTCATGTTTAACATCCCATCAGAC
* * *
65032834 TATAC-CATGTTTAACGTCCCGTTAGAC
1 TAT-CTCATGTTTAACATCCCATCAGAC
** * *
65032861 TATCTCATGTTTAATGTCCCGTCAAAC
1 TATCTCATGTTTAACATCCCATCAGAC
*
65032888 TATCTCATGCTTAACATCCCAT
1 TATCTCATGTTTAACATCCCAT
65032910 TGAACTATCC
Statistics
Matches: 84, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
26 1 0.01
27 82 0.98
28 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.11, T:0.35
Consensus pattern (27 bp):
TATCTCATGTTTAACATCCCATCAGAC
Found at i:65033110 original size:45 final size:45
Alignment explanation
Indices: 65033061--65033146 Score: 136
Period size: 45 Copynumber: 1.9 Consensus size: 45
65033051 TCCTAACTAC
* **
65033061 CATGATGTCATAGCATCTTTCAGCTATGGTCTTACTCATTTCCGT
1 CATGATATCATAGCATCTTTCAGCTATACTCTTACTCATTTCCGT
*
65033106 CATGATATCATAGTATCTTTCAGCTATACTCTTACTCATTT
1 CATGATATCATAGCATCTTTCAGCTATACTCTTACTCATTT
65033147 TAAGCGTATA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.23, C:0.23, G:0.12, T:0.42
Consensus pattern (45 bp):
CATGATATCATAGCATCTTTCAGCTATACTCTTACTCATTTCCGT
Found at i:65036109 original size:9 final size:9
Alignment explanation
Indices: 65036095--65036121 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
65036085 GCTAACCCAA
65036095 TGATCAATT
1 TGATCAATT
65036104 TGATCAATT
1 TGATCAATT
65036113 TGATCAATT
1 TGATCAATT
65036122 GGTGAAGTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.33, C:0.11, G:0.11, T:0.44
Consensus pattern (9 bp):
TGATCAATT
Found at i:65053267 original size:51 final size:51
Alignment explanation
Indices: 65053212--65053335 Score: 146
Period size: 51 Copynumber: 2.4 Consensus size: 51
65053202 CGATCACGTT
* *
65053212 TGTGGTACTAAGTGCAGGCCACTATGTGTAA-AAGATAGCTTTG-TTCAAGAG
1 TGTGGTACTATGTGCAGGCCACTATGTG-AAGAAGATAGCTTTGATACAA-AG
* * * *
65053263 TGTGGTACTATGTGAAGGGCACTTTGTGAAGAAGGTAGCTTTGACTACAAAG
1 TGTGGTACTATGTGCAGGCCACTATGTGAAGAAGATAGCTTTGA-TACAAAG
65053315 -GTGGTACTATGTGCAGGCCAC
1 TGTGGTACTATGTGCAGGCCAC
65053336 CGGGCATCCG
Statistics
Matches: 62, Mismatches: 8, Indels: 6
0.82 0.11 0.08
Matches are distributed among these distances:
50 2 0.03
51 54 0.87
52 2 0.03
53 4 0.06
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.28
Consensus pattern (51 bp):
TGTGGTACTATGTGCAGGCCACTATGTGAAGAAGATAGCTTTGATACAAAG
Found at i:65055275 original size:40 final size:40
Alignment explanation
Indices: 65055220--65055357 Score: 217
Period size: 40 Copynumber: 3.5 Consensus size: 40
65055210 CGGATGATAA
65055220 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
65055260 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
65055300 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
65055340 -CTGGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
65055358 TACTTGGTTT
Statistics
Matches: 92, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
39 18 0.20
40 74 0.80
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:65059848 original size:15 final size:13
Alignment explanation
Indices: 65059828--65059882 Score: 56
Period size: 15 Copynumber: 3.8 Consensus size: 13
65059818 GTCAGTCTGA
65059828 TTGGATTTTCTTGTT
1 TTGGA-TTTCTT-TT
65059843 TTGGATTTCTTTAT
1 TTGGATTTCTTT-T
65059857 GTTGGATTTCTATATT
1 -TTGGATTTCT-T-TT
65059873 TTGGATTTCT
1 TTGGATTTCT
65059883 CCATTATGGA
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
13 1 0.03
14 7 0.19
15 25 0.69
16 2 0.06
17 1 0.03
ACGTcount: A:0.13, C:0.07, G:0.18, T:0.62
Consensus pattern (13 bp):
TTGGATTTCTTTT
Found at i:65060511 original size:18 final size:18
Alignment explanation
Indices: 65060488--65060523 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
65060478 TATCCTCAAA
*
65060488 GCCCTATCAGGATCATCC
1 GCCCTATCAGGATAATCC
65060506 GCCCTATCAGGATAATCC
1 GCCCTATCAGGATAATCC
65060524 TTGTCTTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.36, G:0.17, T:0.22
Consensus pattern (18 bp):
GCCCTATCAGGATAATCC
Found at i:65063268 original size:42 final size:42
Alignment explanation
Indices: 65063204--65063373 Score: 232
Period size: 42 Copynumber: 4.0 Consensus size: 42
65063194 GTTACTCGGG
* *
65063204 AATCTCGCACACTAAATGCCAATGCGTAGCCGAAGCTAACTC
1 AATCTCGCACACTAAATGCCAATGCATAGCCGAAGCTATCTC
** * *
65063246 AATAACGCACACTAAGTGCCAATGCATAGCCGAAGCTATCTT
1 AATCTCGCACACTAAATGCCAATGCATAGCCGAAGCTATCTC
*
65063288 GATCTCGCACACTAAATGCCAATGCATAGCCGAAGCTATCTC
1 AATCTCGCACACTAAATGCCAATGCATAGCCGAAGCTATCTC
* * * * *
65063330 GATCTCGCACAGTAAGTGCCAACGCATAGCCAAAGCTATCTC
1 AATCTCGCACACTAAATGCCAATGCATAGCCGAAGCTATCTC
65063372 AA
1 AA
65063374 ATATTTTCGT
Statistics
Matches: 112, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 112 1.00
ACGTcount: A:0.34, C:0.29, G:0.17, T:0.20
Consensus pattern (42 bp):
AATCTCGCACACTAAATGCCAATGCATAGCCGAAGCTATCTC
Found at i:65063346 original size:84 final size:84
Alignment explanation
Indices: 65063205--65063370 Score: 260
Period size: 84 Copynumber: 2.0 Consensus size: 84
65063195 TTACTCGGGA
* *
65063205 ATCTCGCACACTAAATGCCAATGCGTAGCCGAAGCTAACTCAATAACGCACACTAAGTGCCAATG
1 ATCTCGCACACTAAATGCCAATGCATAGCCGAAGCTAACTCAATAACGCACACTAAGTGCCAACG
*
65063270 CATAGCCGAAGCTATCTTG
66 CATAGCCAAAGCTATCTTG
* * ** *
65063289 ATCTCGCACACTAAATGCCAATGCATAGCCGAAGCTATCTCGATCTCGCACAGTAAGTGCCAACG
1 ATCTCGCACACTAAATGCCAATGCATAGCCGAAGCTAACTCAATAACGCACACTAAGTGCCAACG
65063354 CATAGCCAAAGCTATCT
66 CATAGCCAAAGCTATCT
65063371 CAAATATTTT
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
84 74 1.00
ACGTcount: A:0.33, C:0.30, G:0.17, T:0.20
Consensus pattern (84 bp):
ATCTCGCACACTAAATGCCAATGCATAGCCGAAGCTAACTCAATAACGCACACTAAGTGCCAACG
CATAGCCAAAGCTATCTTG
Found at i:65072479 original size:40 final size:40
Alignment explanation
Indices: 65072400--65072561 Score: 164
Period size: 40 Copynumber: 4.0 Consensus size: 40
65072390 TGGATGATAA
* * ** *
65072400 CCGGACTAAGATCCGAAGGCATTCGTGCAAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
* * * *
65072440 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-CTATAT
* *
65072480 CCGGGCTAAGACTCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
* * * * *
65072520 CTGGGATAAGACCCGAAGGCATTTGTGTGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
65072560 CC
1 CC
65072562 CGCTAAATCC
Statistics
Matches: 100, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
39 2 0.02
40 96 0.96
41 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
Found at i:65080435 original size:40 final size:40
Alignment explanation
Indices: 65080356--65080483 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 40
65080346 CGGATGATAA
* * ** *
65080356 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
* * *
65080396 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-TTATAT
*
65080436 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
65080476 CC-GGCTAA
1 CCGGGCTAA
65080484 ATCCCGATGA
Statistics
Matches: 74, Mismatches: 12, Indels: 5
0.81 0.13 0.05
Matches are distributed among these distances:
39 8 0.11
40 64 0.86
41 2 0.03
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
Found at i:65087335 original size:42 final size:42
Alignment explanation
Indices: 65087289--65087389 Score: 112
Period size: 42 Copynumber: 2.4 Consensus size: 42
65087279 CCAACTATGA
* ** *
65087289 TCTTACACGAAGTCTCACATCAATGCCATGTCCCAAACATGG
1 TCTTACACGAAATCTCACATCAATGCCACATCCCAAACACGG
* * * * *
65087331 TCTTATACGAAATCACATATCGATGCCGCATCCCAAACACGG
1 TCTTACACGAAATCTCACATCAATGCCACATCCCAAACACGG
*
65087373 TGTTACACGAAATCTCA
1 TCTTACACGAAATCTCA
65087390 TACCGAAGTA
Statistics
Matches: 47, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.33, C:0.30, G:0.14, T:0.24
Consensus pattern (42 bp):
TCTTACACGAAATCTCACATCAATGCCACATCCCAAACACGG
Found at i:65087421 original size:42 final size:42
Alignment explanation
Indices: 65087375--65087465 Score: 101
Period size: 42 Copynumber: 2.2 Consensus size: 42
65087365 AAACACGGTG
* *
65087375 TTACACGAAATCTCATACCGAAGTAATATCCCAGATATAGTC
1 TTACACGAAATCTCATACCGAAGCAATATCCCAGACATAGTC
** * * ** *
65087417 TTACACGGGATCTCATATCGATGCCCTATCCCAGACATGGTC
1 TTACACGAAATCTCATACCGAAGCAATATCCCAGACATAGTC
65087459 TTACACG
1 TTACACG
65087466 TATCACAATT
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.26
Consensus pattern (42 bp):
TTACACGAAATCTCATACCGAAGCAATATCCCAGACATAGTC
Found at i:65087517 original size:37 final size:36
Alignment explanation
Indices: 65087435--65087582 Score: 181
Period size: 37 Copynumber: 4.0 Consensus size: 36
65087425 GATCTCATAT
* * *
65087435 CGATGCCCTATCCCAGAC-ATGGTCTTACACGTATCA
1 CGATGCCATAGCCCAG-CTATGGTCTTACATGTATCA
* *
65087471 CAATTCCATAGCCCAGCTATGGTCTTACATGTCATCA
1 CGATGCCATAGCCCAGCTATGGTCTTACATGT-ATCA
*
65087508 CGATGCCATAGCCCAGCTATGGTCTTACATGTTATTA
1 CGATGCCATAGCCCAGCTATGGTCTTACATG-TATCA
* *
65087545 CTATGCCATAGCCCAGCTATGGTCTTACACGTACTCA
1 CGATGCCATAGCCCAGCTATGGTCTTACATGTA-TCA
65087582 C
1 C
65087583 ATGTATTGCC
Statistics
Matches: 97, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
35 1 0.01
36 27 0.28
37 68 0.70
38 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.28
Consensus pattern (36 bp):
CGATGCCATAGCCCAGCTATGGTCTTACATGTATCA
Found at i:65087530 original size:73 final size:74
Alignment explanation
Indices: 65087435--65087573 Score: 201
Period size: 74 Copynumber: 1.9 Consensus size: 74
65087425 GATCTCATAT
* * *
65087435 CGATGCCCTATCCCAGACATGGTCTTACACG-TATCACAATTCCATAGCCCAGCTATGGTCTTAC
1 CGATGCCATAGCCCAGACATGGTCTTACACGTTATCACAATGCCATAGCCCAGCTATGGTCTTAC
65087499 ATGTCATCA
66 ATGTCATCA
* * *
65087508 CGATGCCATAGCCCAG-CTATGGTCTTACATGTTATTACTATGCCATAGCCCAGCTATGGTCTTA
1 CGATGCCATAGCCCAGAC-ATGGTCTTACACGTTATCACAATGCCATAGCCCAGCTATGGTCTTA
65087572 CA
65 CA
65087574 CGTACTCACA
Statistics
Matches: 58, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
72 1 0.02
73 26 0.45
74 31 0.53
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (74 bp):
CGATGCCATAGCCCAGACATGGTCTTACACGTTATCACAATGCCATAGCCCAGCTATGGTCTTAC
ATGTCATCA
Found at i:65089642 original size:32 final size:32
Alignment explanation
Indices: 65089599--65089665 Score: 116
Period size: 32 Copynumber: 2.1 Consensus size: 32
65089589 TACTCAATTG
*
65089599 AATTTTCGTACATACCTGTACCATCTCGTACC
1 AATTTTCGTACATACCTATACCATCTCGTACC
*
65089631 AATTTTTGTACATACCTATACCATCTCGTACC
1 AATTTTCGTACATACCTATACCATCTCGTACC
65089663 AAT
1 AAT
65089666 CTCACACTCA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.28, C:0.28, G:0.07, T:0.36
Consensus pattern (32 bp):
AATTTTCGTACATACCTATACCATCTCGTACC
Found at i:65089795 original size:42 final size:42
Alignment explanation
Indices: 65089731--65089852 Score: 181
Period size: 42 Copynumber: 2.9 Consensus size: 42
65089721 TTACTTGGGA
* * * **
65089731 ATCTTGCACACTAAGTGCCAATGCGTTGCCGAAGCTATCTTG
1 ATCTCGCACACTAAGTGCCAATGCATAGCCGAAGCTATCCCG
*
65089773 ATCTCGCACACTAAGTGCCAATGCATAACCGAAGCTATCCCG
1 ATCTCGCACACTAAGTGCCAATGCATAGCCGAAGCTATCCCG
*
65089815 ATCTCGCACACTAAGTGCCAATACATAGCCGAAGCTAT
1 ATCTCGCACACTAAGTGCCAATGCATAGCCGAAGCTAT
65089853 ATCAAATATT
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 72 1.00
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.23
Consensus pattern (42 bp):
ATCTCGCACACTAAGTGCCAATGCATAGCCGAAGCTATCCCG
Found at i:65092093 original size:50 final size:51
Alignment explanation
Indices: 65092023--65092209 Score: 178
Period size: 51 Copynumber: 3.7 Consensus size: 51
65092013 TGATTTTACG
* * * * *
65092023 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACTAGAT-GGTTAGG
1 TCACATGTGTAGTACTAAGTGCAGGCCACTATGTGTACCAGATAGCTTAGA
* * * * *
65092073 TCGCATGTGTAGTACTAAGTGCAGGCCACGATGCGTACCCGATAGCTTCGA
1 TCACATGTGTAGTACTAAGTGCAGGCCACTATGTGTACCAGATAGCTTAGA
* * ** * *
65092124 TCACATGTGTGGTACTAAGTGTAGGCCACTATGTGTAAAAGATAGCTTTGG
1 TCACATGTGTAGTACTAAGTGCAGGCCACTATGTGTACCAGATAGCTTAGA
* * * * *
65092175 TCACAAGTGTGGTACTATGTGAAGGCCACTTTGTG
1 TCACATGTGTAGTACTAAGTGCAGGCCACTATGTG
65092210 AAAAAGGTAG
Statistics
Matches: 112, Mismatches: 24, Indels: 1
0.82 0.18 0.01
Matches are distributed among these distances:
50 36 0.32
51 76 0.68
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (51 bp):
TCACATGTGTAGTACTAAGTGCAGGCCACTATGTGTACCAGATAGCTTAGA
Found at i:65092204 original size:51 final size:51
Alignment explanation
Indices: 65092113--65092254 Score: 178
Period size: 51 Copynumber: 2.8 Consensus size: 51
65092103 ATGCGTACCC
* * * * *
65092113 GATAGCTTCGATCACATGTGTGGTACTAAGTGTAGGCCACTATGTGTAAAA
1 GATAGCTTTGGTCACAAGTGTGGTACTATGTGTAGGCCACTATGTGAAAAA
* *
65092164 GATAGCTTTGGTCACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAAAA
1 GATAGCTTTGGTCACAAGTGTGGTACTATGTGTAGGCCACTATGTGAAAAA
* * *
65092215 GGTAGCTTT-GACTACAAGGGTGGTACTATGTGTAGGCCAC
1 GATAGCTTTGGTC-ACAAGTGTGGTACTATGTGTAGGCCAC
65092255 CGGGCATTTG
Statistics
Matches: 79, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
50 2 0.03
51 77 0.97
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (51 bp):
GATAGCTTTGGTCACAAGTGTGGTACTATGTGTAGGCCACTATGTGAAAAA
Found at i:65096827 original size:30 final size:30
Alignment explanation
Indices: 65096791--65096850 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
65096781 TTCATATTGA
65096791 TTATTTGGGTTGTAACCCTAATCAATTATG
1 TTATTTGGGTTGTAACCCTAATCAATTATG
65096821 TTATTTGGGTTGTAACCCTAATCAATTATG
1 TTATTTGGGTTGTAACCCTAATCAATTATG
65096851 CATGCATGCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.27, C:0.13, G:0.17, T:0.43
Consensus pattern (30 bp):
TTATTTGGGTTGTAACCCTAATCAATTATG
Found at i:65099280 original size:22 final size:22
Alignment explanation
Indices: 65099252--65099296 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
65099242 GGGTACATGA
65099252 TATTACATTATAATTATTGAGC
1 TATTACATTATAATTATTGAGC
65099274 TATTACATTATAATTATTGAGC
1 TATTACATTATAATTATTGAGC
65099296 T
1 T
65099297 TGAGTATATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.36, C:0.09, G:0.09, T:0.47
Consensus pattern (22 bp):
TATTACATTATAATTATTGAGC
Found at i:65099788 original size:27 final size:27
Alignment explanation
Indices: 65099758--65099934 Score: 149
Period size: 27 Copynumber: 6.5 Consensus size: 27
65099748 AAATTGTACA
* * * *
65099758 GCACTAAGGGTGCGATTTGAGTATGTT
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
65099785 GCACTCAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
65099812 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
** *
65099839 GCACTAAGTGTGCGAGCCTGACTATGTA
1 GCACTAAGTGTGCGA-ATTGACTATGTG
* * *
65099867 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * * *
65099894 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAATTGACTATGTG
*
65099921 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
65099935 GGCTCAATAT
Statistics
Matches: 122, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 99 0.81
28 23 0.19
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:65099880 original size:55 final size:54
Alignment explanation
Indices: 65099785--65099934 Score: 158
Period size: 55 Copynumber: 2.8 Consensus size: 54
65099775 TGAGTATGTT
* ** * *
65099785 GCACTCAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAGCTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * ** *
65099839 GCACTAAGTGTGCGAGCCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAG-CTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* * *
65099894 GCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAGTGTGCGAGCTGACTATATAGCACTAAGTGTGCG
65099935 GGCTCAATAT
Statistics
Matches: 80, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
54 36 0.45
55 44 0.55
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.27
Consensus pattern (54 bp):
GCACTAAGTGTGCGAGCTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:65114908 original size:21 final size:21
Alignment explanation
Indices: 65114871--65114910 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
65114861 AAGCGGATAC
*
65114871 AGCAGCGAGGGAGGCAGAGGA
1 AGCAGCGAGGCAGGCAGAGGA
65114892 AGCAGCGATGGCA-GCAGAG
1 AGCAGCGA-GGCAGGCAGAG
65114911 CAGAGCAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.33, C:0.17, G:0.47, T:0.03
Consensus pattern (21 bp):
AGCAGCGAGGCAGGCAGAGGA
Found at i:65115180 original size:33 final size:33
Alignment explanation
Indices: 65115138--65115218 Score: 105
Period size: 31 Copynumber: 2.5 Consensus size: 33
65115128 TTAGATTTAA
* *
65115138 TGTTTTTGGTTGTATTTTTTATGCTACATTT-T
1 TGTTTTTGGTTGGATTTTTCATGCTACATTTGT
*
65115170 CTGTTTTTGGTTGGA--TTTCATGCTATATTTGT
1 -TGTTTTTGGTTGGATTTTTCATGCTACATTTGT
65115202 TGTTTTTGGTTGGATTT
1 TGTTTTTGGTTGGATTT
65115219 AATGTAGAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
31 27 0.64
32 1 0.02
33 14 0.33
ACGTcount: A:0.11, C:0.06, G:0.21, T:0.62
Consensus pattern (33 bp):
TGTTTTTGGTTGGATTTTTCATGCTACATTTGT
Found at i:65115464 original size:86 final size:86
Alignment explanation
Indices: 65115281--65115476 Score: 234
Period size: 86 Copynumber: 2.3 Consensus size: 86
65115271 ATTAGCGGCA
* * * ** * *
65115281 CTTCCCC-ACAAACACCGCTAAAGGCCATGACTTTTAGCGGCGATTCCCCCACAAACGCCGCTAA
1 CTTCCCCAACAAACGCCACTAAAAGCTGTGACTTTTACCGGCGATTCCCCCACAAACGCCACTAA
*
65115345 AGGCCATGACTTTTAGCGACG
66 AGGCCATGACTTTTAACGACG
* * * *
65115366 CTTCCCCCACAAATGCCGCTAAAAGCTGTGACTTTTACCGGCGCTTCCCCCACAAACGCCACTAA
1 CTTCCCCAACAAACGCCACTAAAAGCTGTGACTTTTACCGGCGATTCCCCCACAAACGCCACTAA
*
65115431 AGGCCATGACTTTTAAC-AGTG
66 AGGCCATGACTTTTAACGA-CG
**
65115452 CTTTTCCAACAAACGCCACTAAAAG
1 CTTCCCCAACAAACGCCACTAAAAG
65115477 TCATGATCTT
Statistics
Matches: 94, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
85 8 0.09
86 86 0.91
ACGTcount: A:0.29, C:0.35, G:0.16, T:0.20
Consensus pattern (86 bp):
CTTCCCCAACAAACGCCACTAAAAGCTGTGACTTTTACCGGCGATTCCCCCACAAACGCCACTAA
AGGCCATGACTTTTAACGACG
Found at i:65115474 original size:43 final size:43
Alignment explanation
Indices: 65115272--65115445 Score: 251
Period size: 43 Copynumber: 4.1 Consensus size: 43
65115262 TCAGCCAAAA
* *
65115272 TTAGCGGCACTT-CCCCACAAACACCGCTAAAGGCCATGACTT
1 TTAGCGGCGCTTCCCCCACAAACGCCGCTAAAGGCCATGACTT
*
65115314 TTAGCGGCGATTCCCCCACAAACGCCGCTAAAGGCCATGACTT
1 TTAGCGGCGCTTCCCCCACAAACGCCGCTAAAGGCCATGACTT
* * * **
65115357 TTAGCGACGCTTCCCCCACAAATGCCGCTAAAAGCTGTGACTT
1 TTAGCGGCGCTTCCCCCACAAACGCCGCTAAAGGCCATGACTT
* *
65115400 TTACCGGCGCTTCCCCCACAAACGCCACTAAAGGCCATGACTT
1 TTAGCGGCGCTTCCCCCACAAACGCCGCTAAAGGCCATGACTT
65115443 TTA
1 TTA
65115446 ACAGTGCTTT
Statistics
Matches: 115, Mismatches: 16, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
42 10 0.09
43 105 0.91
ACGTcount: A:0.26, C:0.35, G:0.18, T:0.21
Consensus pattern (43 bp):
TTAGCGGCGCTTCCCCCACAAACGCCGCTAAAGGCCATGACTT
Found at i:65117510 original size:13 final size:14
Alignment explanation
Indices: 65117494--65117524 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
65117484 GTTAAAAGTG
65117494 TAAATTAA-TAAAA
1 TAAATTAAGTAAAA
65117507 TAAATTAAGTAAAA
1 TAAATTAAGTAAAA
65117521 TAAA
1 TAAA
65117525 AATAACATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.47
14 9 0.53
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (14 bp):
TAAATTAAGTAAAA
Found at i:65119158 original size:24 final size:25
Alignment explanation
Indices: 65119131--65119179 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
65119121 AGGCCTTTGG
*
65119131 ATATG-TTGTGTAT-AATTGTTATTT
1 ATATGCTTGT-TATGAATTGGTATTT
65119155 ATATGCTTGTTATGAATTGGTATTT
1 ATATGCTTGTTATGAATTGGTATTT
65119180 GGAGTATCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 8 0.36
25 14 0.64
ACGTcount: A:0.24, C:0.02, G:0.18, T:0.55
Consensus pattern (25 bp):
ATATGCTTGTTATGAATTGGTATTT
Found at i:65121650 original size:40 final size:40
Alignment explanation
Indices: 65121603--65121747 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
65121593 CTCGCACAAG
* * * * *
65121603 GCCTTCGGGCCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
*
65121643 GCCTTCGGGGCTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
65121683 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
65121724 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
65121748 CATTCGAGTA
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 2 0.02
40 59 0.65
41 27 0.30
42 3 0.03
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:65124114 original size:37 final size:37
Alignment explanation
Indices: 65124053--65124131 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
65124043 TTATTACGAA
* * *
65124053 GTCTTACCCAGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
* *
65124090 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
65124127 GTCTT
1 GTCTT
65124132 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
Found at i:65124328 original size:47 final size:47
Alignment explanation
Indices: 65124250--65124729 Score: 771
Period size: 47 Copynumber: 10.1 Consensus size: 47
65124240 CCCTTCGGGA
* * * * * *
65124250 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
65124297 CCTGTCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65124344 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65124391 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65124440 CTTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
65124487 CTTATCACGTATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65124534 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65124583 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65124630 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65124679 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65124726 CTTA
1 CTTA
65124730 CTATCATTTC
Statistics
Matches: 404, Mismatches: 23, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
47 268 0.66
49 136 0.34
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:65124451 original size:96 final size:95
Alignment explanation
Indices: 65124250--65124729 Score: 754
Period size: 96 Copynumber: 5.0 Consensus size: 95
65124240 CCCTTCGGGA
* * * * * * * * *
65124250 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC-ATATATATA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACTATATATACA
65124314 CTTTCACATTCATCACATCGGCCATTAGGC
66 CTTTCACATTCATCACATCGGCCATTAGGC
*
65124344 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-TATATATAC
65124409 ACTTTCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
*
65124440 CTTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACGTATATAT--
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-TATATATAC
65124503 ACTTTCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
*
65124534 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-GTATATA
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACTATATATA
65124598 CACTTTCACATTCATCACATCGGCCATTAGGC
64 CACTTTCACATTCATCACATCGGCCATTAGGC
65124630 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATA
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACTATATATA
*
65124694 CACTTTCACGTTCATCACATCGGCCATTAGGC
64 CACTTTCACATTCATCACATCGGCCATTAGGC
65124726 CTTA
1 CTTA
65124730 CTATCATTTC
Statistics
Matches: 365, Mismatches: 15, Indels: 10
0.94 0.04 0.03
Matches are distributed among these distances:
94 91 0.25
96 274 0.75
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (95 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACTATATATACA
CTTTCACATTCATCACATCGGCCATTAGGC
Found at i:65124519 original size:143 final size:143
Alignment explanation
Indices: 65124250--65124729 Score: 788
Period size: 143 Copynumber: 3.4 Consensus size: 143
65124240 CCCTTCGGGA
* * * * * * * *
65124250 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
65124313 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACTTTCACATTCATCACA
65124378 TCGGCCATTAGGC
131 TCGGCCATTAGGC
* *
65124391 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
65124456 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACGTATATATACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACTTTCACATTCATCACA
65124521 TCGGCCATTAGGC
131 TCGGCCATTAGGC
*
65124534 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACGTATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
65124599 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT--ACTTTCACATTCATCA
65124664 CATCGGCCATTAGGC
129 CATCGGCCATTAGGC
*
65124679 CTTATCAC--ATATATACACTTTCACGTTCATCACATCGGCCATTAGGCCTTA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
65124730 CTATCATTTC
Statistics
Matches: 318, Mismatches: 17, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
141 9 0.03
142 1 0.00
143 269 0.85
145 39 0.12
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (143 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:65128757 original size:40 final size:40
Alignment explanation
Indices: 65128711--65128867 Score: 224
Period size: 40 Copynumber: 3.9 Consensus size: 40
65128701 CGAATACATG
* * * *
65128711 TCACCAGCATGATTGCTCTTTGGGACCTAGCCCGGATATA
1 TCACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * **
65128751 ACACCAGCACGAATGCTCTTCGAAACTTAGCCCGGATACA
1 TCACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
65128791 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
65128831 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 TCACCAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
65128868 TTAGTAACTC
Statistics
Matches: 104, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 104 1.00
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
TCACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:65128892 original size:40 final size:40
Alignment explanation
Indices: 65128732--65128985 Score: 191
Period size: 40 Copynumber: 6.4 Consensus size: 40
65128722 ATTGCTCTTT
* * *
65128732 GGGACCTAGCCCGGATATA--ACACCAGCACGAATGCTCTTC
1 GGGACTTAGCCCGGATATAGTA-ACTAGCACCAATGC-CTTC
** * * **
65128772 GAAACTTAGCCCGGATACA-TCACTAGCATGAATGCTCTTC
1 GGGACTTAGCCCGGATATAGTAACTAGCACCAATGC-CTTC
* * **
65128812 GGGACTTAGCCCGGATACA-TCACTAGCATGAATGCTCTTC
1 GGGACTTAGCCCGGATATAGTAACTAGCACCAATGC-CTTC
* *
65128852 GGGACTTAGCCCGGATTTAGTAACTCGCACCAATGCCTTC
1 GGGACTTAGCCCGGATATAGTAACTAGCACCAATGCCTTC
* * *
65128892 GGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC
1 GGGACTTAGCCCGGATA-TAGTAACTAGCACCAATGCCTTC
* * * *
65128931 -GGATCTTAGTCCGGATATGGTCACTTAGCA-CAAAGCCTTC
1 GGGA-CTTAGCCCGGATATAGTAAC-TAGCACCAATGCCTTC
65128971 GGGACTTAGCCCGGA
1 GGGACTTAGCCCGGA
65128986 CATCATTCGA
Statistics
Matches: 180, Mismatches: 26, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
38 2 0.01
39 32 0.18
40 126 0.70
41 20 0.11
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
GGGACTTAGCCCGGATATAGTAACTAGCACCAATGCCTTC
Found at i:65128892 original size:80 final size:80
Alignment explanation
Indices: 65128724--65128905 Score: 215
Period size: 80 Copynumber: 2.3 Consensus size: 80
65128714 CCAGCATGAT
* * *
65128724 TGCTCTTTGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGAAACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACAACACCAGCACGAATGCTCTTCGAAACTTAGCCCGGATA
* **
65128789 CATCACTAGCATGAA
66 CATAACTAGCACCAA
* * * ** *
65128804 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATT
1 TGCTCTTCGGGACTTAGCCCGGATACAACACCAGCACGAATGCTCTTCGAAACTTAGCCCGGATA
* *
65128869 TAGTAACTCGCACCAA
66 CA-TAACTAGCACCAA
65128885 TGC-CTTCGGG-CTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
65128906 ATTAGTATCT
Statistics
Matches: 87, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 11 0.13
80 64 0.74
81 12 0.14
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (80 bp):
TGCTCTTCGGGACTTAGCCCGGATACAACACCAGCACGAATGCTCTTCGAAACTTAGCCCGGATA
CATAACTAGCACCAA
Found at i:65129330 original size:29 final size:29
Alignment explanation
Indices: 65129291--65129369 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
65129281 CTTAATAATC
*
65129291 AACCACGCACACTTAGTGCCATATACTTT-A
1 AACC-CGCACACTTAGTGCCATACA-TTTCA
* *
65129321 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATACATTTCA
*
65129350 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
65129370 ATCTCACAAC
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
28 3 0.07
29 37 0.86
30 3 0.07
ACGTcount: A:0.29, C:0.33, G:0.14, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATACATTTCA
Found at i:65129412 original size:43 final size:43
Alignment explanation
Indices: 65129351--65129453 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
65129341 TGCATTTCAA
65129351 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
65129394 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAAGACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
65129437 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
65129454 TGAAAACCAA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.26, C:0.35, G:0.17, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:65131246 original size:37 final size:37
Alignment explanation
Indices: 65131196--65131274 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
65131186 TTATTACGAA
* * *
65131196 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
65131233 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
65131270 GTCTT
1 GTCTT
65131275 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:65131471 original size:47 final size:47
Alignment explanation
Indices: 65131393--65131920 Score: 833
Period size: 47 Copynumber: 11.1 Consensus size: 47
65131383 CCCTTCGGGA
* * * * * *
65131393 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
65131440 CCTGTCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65131487 CTTATCACAGATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65131534 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65131583 C-TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
65131631 CGTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65131678 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65131725 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65131774 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65131821 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65131870 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65131917 CTTA
1 CTTA
65131921 CTATCATTTC
Statistics
Matches: 451, Mismatches: 23, Indels: 14
0.92 0.05 0.03
Matches are distributed among these distances:
47 267 0.59
48 48 0.11
49 136 0.30
ACGTcount: A:0.29, C:0.30, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:65131759 original size:96 final size:96
Alignment explanation
Indices: 65131393--65131920 Score: 868
Period size: 96 Copynumber: 5.5 Consensus size: 96
65131383 CCCTTCGGGA
* * * * * * * *
65131393 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAT--
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
65131456 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
65131487 CTTATCACAGATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
65131552 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
65131583 C-TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCGTATCTC--ATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
65131645 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
65131678 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
65131743 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
65131774 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
65131839 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
65131870 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGCCTTA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
65131921 CTATCATTTC
Statistics
Matches: 411, Mismatches: 16, Indels: 12
0.94 0.04 0.03
Matches are distributed among these distances:
94 99 0.24
95 46 0.11
96 222 0.54
97 44 0.11
ACGTcount: A:0.29, C:0.30, G:0.10, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:65131787 original size:143 final size:144
Alignment explanation
Indices: 65131393--65131920 Score: 847
Period size: 143 Copynumber: 3.7 Consensus size: 144
65131383 CCCTTCGGGA
* * * * * * * *
65131393 CTTATCAC-ATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAT-
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
65131456 -ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAG-ATATACACTTTCACATTCATCA
66 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-GTATATACACTTTCACATTCATCA
65131519 CATCGGCCATTAGGC
130 CATCGGCCATTAGGC
*
65131534 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC-TATCACATATATAT
1 CTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
* * *
65131598 ACACTTTCACATTCATCACATCGGCCATTAGGCCGTATCTCATATATACACTTTCACATTCATCA
65 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACGTATATACACTTTCACATTCATCA
65131663 CATCGGCCATTAGGC
130 CATCGGCCATTAGGC
*
65131678 CTTATCAC-GTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
65131742 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACGTATATACACTTTCACATTCATCAC
66 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACGTATATACACTTTCACATTCATCAC
65131807 ATCGGCCATTAGGC
131 ATCGGCCATTAGGC
65131821 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
1 CTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
65131884 ACACTTTCACGTTCATCACATCGGCCATTAGGCCTTA
65 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
65131921 CTATCATTTC
Statistics
Matches: 361, Mismatches: 18, Indels: 14
0.92 0.05 0.04
Matches are distributed among these distances:
141 7 0.02
142 52 0.14
143 175 0.48
144 81 0.22
145 46 0.13
ACGTcount: A:0.29, C:0.30, G:0.10, T:0.32
Consensus pattern (144 bp):
CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACGTATATACACTTTCACATTCATCAC
ATCGGCCATTAGGC
Found at i:65145848 original size:37 final size:37
Alignment explanation
Indices: 65145798--65145876 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
65145788 TTATTACGAA
* * *
65145798 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
* * *
65145835 GTCTTACCTGGACAAAATCCCCACACGTAGTCATCGT
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
65145872 GTCTT
1 GTCTT
65145877 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:65146073 original size:47 final size:47
Alignment explanation
Indices: 65145995--65146262 Score: 403
Period size: 47 Copynumber: 5.7 Consensus size: 47
65145985 CCTTTCGGGA
* * * * * * * *
65145995 CTTATCACATTTATGCACTTTCACATCCATTACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
65146042 CCTGTCACATATATACACTTTCACATTCATTACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65146089 CTTATCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65146136 CTTATCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65146183 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65146230 CTTATTACATATATACACTTTCACATT-ATCACA
1 CTTATCACATATATACACTTTCACATTCATCACA
65146263 CATATATACT
Statistics
Matches: 206, Mismatches: 15, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
46 6 0.03
47 200 0.97
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:65146249 original size:141 final size:139
Alignment explanation
Indices: 65145995--65146466 Score: 518
Period size: 141 Copynumber: 3.5 Consensus size: 139
65145985 CCTTTCGGGA
* * * * * * * * * *
65145995 CTTATCACATTTATGCACTTTCACATCCATTACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* *
65146060 TTTCACATTCATTACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCGCATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATTACATATATACACTTTCACATTCATC-CATC
65146125 GGCCATTAGGC
130 GGCCATTA-GC
*
65146136 CTTATCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
65146201 TTTCACATTCATCACATCGGCCATTAGGCCTTATTACATATATACACTTTCACATT-AT-CA-C-
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATTACATATATACACTTTCACATTCATCCATCG
*
65146262 -ACA-TA--
131 GCCATTAGC
* * * *
65146267 --TAT-AC-T-T-T-CAC-A-----TTCATCACGTCGGCTATTAGGCCTTATCACACATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
65146319 TTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATACACTTTCACATTCATCA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATTAC--ATAT--ATACACTTTCACATTCATC-
65146384 CATCGGCCATTAGAC
126 CATCGGCCATTAG-C
* *
65146399 CTTATCACATATACATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATAC
1 CTTATCACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
65146464 ACT
64 ACT
65146467 CTCTTGGCTG
Statistics
Matches: 277, Mismatches: 25, Indels: 52
0.78 0.07 0.15
Matches are distributed among these distances:
118 72 0.26
120 4 0.01
122 15 0.05
123 2 0.01
124 3 0.01
125 3 0.01
126 2 0.01
127 1 0.00
128 4 0.01
129 5 0.02
134 5 0.02
135 4 0.01
136 1 0.00
137 2 0.01
138 2 0.01
140 3 0.01
141 111 0.40
147 38 0.14
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (139 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATTACATATATACACTTTCACATTCATCCATCG
GCCATTAGC
Found at i:65146258 original size:24 final size:24
Alignment explanation
Indices: 65146231--65146286 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
65146221 CCATTAGGCC
* *
65146231 TTATTACATATATACACTTTCACA
1 TTATCACACATATACACTTTCACA
*
65146255 TTATCACACATATATACTTTCACA
1 TTATCACACATATACACTTTCACA
65146279 TTCATCAC
1 TT-ATCAC
65146287 GTCGGCTATT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
24 23 0.82
25 5 0.18
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (24 bp):
TTATCACACATATACACTTTCACA
Found at i:65146265 original size:26 final size:25
Alignment explanation
Indices: 65146240--65146286 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
65146230 CTTATTACAT
*
65146240 ATATACACTTTCACATT-ATCACAC
1 ATATATACTTTCACATTCATCACAC
65146264 ATATATACTTTCACATTCATCAC
1 ATATATACTTTCACATTCATCAC
65146287 GTCGGCTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 16 0.76
25 5 0.24
ACGTcount: A:0.36, C:0.28, G:0.00, T:0.36
Consensus pattern (25 bp):
ATATATACTTTCACATTCATCACAC
Found at i:65146268 original size:71 final size:71
Alignment explanation
Indices: 65146184--65146334 Score: 239
Period size: 71 Copynumber: 2.1 Consensus size: 71
65146174 CCATTAGGCC
* * *
65146184 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATTACATATATACACT
1 TTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACT
65146249 TTCACA
66 TTCACA
* * *
65146255 TTATCACACATATATACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACACATATACACT
1 TTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACT
65146320 TTCACA
66 TTCACA
65146326 TTCATCACA
1 TT-ATCACA
65146335 TCGGCTATTA
Statistics
Matches: 73, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
71 67 0.92
72 6 0.08
ACGTcount: A:0.32, C:0.28, G:0.06, T:0.34
Consensus pattern (71 bp):
TTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACT
TTCACA
Found at i:65146277 original size:118 final size:118
Alignment explanation
Indices: 65146137--65146364 Score: 393
Period size: 118 Copynumber: 1.9 Consensus size: 118
65146127 CCATTAGGCC
* * *
65146137 TTATCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGCCTTATCACATATATACACT
1 TTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACT
65146202 TTCACATTCATCACATCGGCCATTAGGCCTTATTACATATATACACTTTCACA
66 TTCACATTCATCACATCGGCCATTAGGCCTTATTACATATATACACTTTCACA
* * *
65146255 TTATCACACATATATACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACACATATACACT
1 TTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACT
*
65146320 TTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACA
66 TTCACATTCATCACATCGGCCATTAGGCCTTATTACATATATACA
65146365 TACACTTTCA
Statistics
Matches: 103, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
118 103 1.00
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.34
Consensus pattern (118 bp):
TTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACT
TTCACATTCATCACATCGGCCATTAGGCCTTATTACATATATACACTTTCACA
Found at i:65146280 original size:165 final size:169
Alignment explanation
Indices: 65146090--65146434 Score: 536
Period size: 165 Copynumber: 2.0 Consensus size: 169
65146080 CCATTAGGCC
* * *
65146090 TTATCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGCCTTATCACATATATACACT
1 TTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACT
*
65146155 TTCACATTCATCGCATCGGCCATTAGGCCTTA-T-CACATAT-ATACACTTTCACATTCATCACA
66 TTCACATTCATCACATCGGCCATTAGGCCTTATTACACATATAATACACTTTCACATTCATCACA
* *
65146217 TCGGCCATTAGGCCTTATTACATAT-ATACACTTTCACA
131 TCGGCCATTAGACCTTATCACATATAATACACTTTCACA
* * *
65146255 TTATCACACATATATACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACACATATACACT
1 TTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACT
* *
65146320 TTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATACACTTTCACATTCATCAC
66 TTCACATTCATCACATCGGCCATTAGGCCTTATTACACATATA-ATACACTTTCACATTCATCAC
65146385 ATCGGCCATTAGACCTTATCACATATACATACACTTTCACA
130 ATCGGCCATTAGACCTTATCACATATA-ATACACTTTCACA
65146426 TTCATCACA
1 TT-ATCACA
65146435 TCGGCTATTA
Statistics
Matches: 162, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
165 89 0.55
166 1 0.01
167 6 0.04
169 45 0.28
171 15 0.09
172 6 0.04
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.33
Consensus pattern (169 bp):
TTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACT
TTCACATTCATCACATCGGCCATTAGGCCTTATTACACATATAATACACTTTCACATTCATCACA
TCGGCCATTAGACCTTATCACATATAATACACTTTCACA
Found at i:65146307 original size:47 final size:47
Alignment explanation
Indices: 65146255--65146466 Score: 298
Period size: 49 Copynumber: 4.4 Consensus size: 47
65146245 CACTTTCACA
* * *
65146255 TTATCACACATATATACTTTCACATTCATCACGTCGGCTATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCC
*
65146302 TTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCC
* * *
65146349 TTATTACATATATACATACACTTTCACATTCATCACATCGGCCATTAGACC
1 TTA-T-CACATAT--ATACACTTTCACATTCATCACATCGGCTATTAGGCC
65146400 TTATCACATATACATACACTTTCACATTCATCACATCGGCTATTAGGCC
1 TTATCACATAT--ATACACTTTCACATTCATCACATCGGCTATTAGGCC
*
65146449 TTATTACATATATACACT
1 TTATCACATATATACACT
65146467 CTCTTGGCTG
Statistics
Matches: 151, Mismatches: 10, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
47 55 0.36
48 1 0.01
49 57 0.38
50 1 0.01
51 37 0.25
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.34
Consensus pattern (47 bp):
TTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCC
Found at i:65146444 original size:100 final size:98
Alignment explanation
Indices: 65146270--65146464 Score: 336
Period size: 100 Copynumber: 2.0 Consensus size: 98
65146260 ACACATATAT
* * *
65146270 ACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACA
1 ACTTTCACATTCATCACATCGGCCATTAGACCTTATCACACATATACACTTTCACATTCATCACA
65146335 TCGGCTATTAGGCCTTATTACATATATACATAC
66 TCGGCTATTAGGCCTTATTACATATATACATAC
*
65146368 ACTTTCACATTCATCACATCGGCCATTAGACCTTATCACATATACATACACTTTCACATTCATCA
1 ACTTTCACATTCATCACATCGGCCATTAGACCTTATCACACAT--ATACACTTTCACATTCATCA
65146433 CATCGGCTATTAGGCCTTATTACATATATACA
64 CATCGGCTATTAGGCCTTATTACATATATACA
65146465 CTCTCTTGGC
Statistics
Matches: 91, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
98 39 0.43
100 52 0.57
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.33
Consensus pattern (98 bp):
ACTTTCACATTCATCACATCGGCCATTAGACCTTATCACACATATACACTTTCACATTCATCACA
TCGGCTATTAGGCCTTATTACATATATACATAC
Found at i:65146458 original size:43 final size:47
Alignment explanation
Indices: 65146270--65146466 Score: 223
Period size: 47 Copynumber: 4.1 Consensus size: 47
65146260 ACACATATAT
* * * * * *
65146270 ACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACACATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGACCTTATCATATACATAC
* *
65146317 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATAC
1 ACTTTCACATTCATCACATCGGCCATTAGACCTTA-T-C--ATATACATAC
65146368 ACTTTCACATTCATCACATCGGCCATTAGACCTTATCACATATACATAC
1 ACTTTCACATTCATCACATCGGCCATTAGACCTTAT--CATATACATAC
* * * * *
65146417 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGACCTTATCATATACATAC
65146464 ACT
1 ACT
65146467 CTCTTGGCTG
Statistics
Matches: 134, Mismatches: 11, Indels: 10
0.86 0.07 0.06
Matches are distributed among these distances:
47 45 0.34
48 1 0.01
49 45 0.34
50 1 0.01
51 42 0.31
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGACCTTATCATATACATAC
Found at i:65158302 original size:48 final size:48
Alignment explanation
Indices: 65158229--65158737 Score: 414
Period size: 48 Copynumber: 10.6 Consensus size: 48
65158219 TATGTGAGAC
* * * * ** *
65158229 AGTGTAAGACCATGTTTGTAGCATGGCATCGGCATTAAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCGAGATGAGAGCT
* * * *
65158277 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGTGAGCT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCGAGATGAGAGCT
** * * * *
65158325 AGTGTAAGATTATGTTTGGAACATGGCATCGGCATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCGAGATGAGAGCT
* * * * * *
65158373 AGAGTAAAACCATGTCT-GAGACATGGAATCAGCCTCGATATGTGAGGC-
1 AGTGTAAGACCATGTCTGGA-ACATGGCATCGGCCTCGAGATGAGA-GCT
* * * * * *
65158421 AGTATAAGACCATGTTTGAAACATGGCATCGACCTTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCGAGATGAGAGCT
* * * * * *
65158469 AGTGTAAGACCATGTCTAGTACATAGCATCGGCCTCGATATGTGAGCC
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCGAGATGAGAGCT
* * * * * *
65158517 ACTATAAGATCATGTTTGGAACATGGCATCGGCATTGAGATGAGAGCT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCGAGATGAGAGCT
* * * * *
65158565 AGTGTAAGACGATATCTAGG-ACATGGCATTGGCCTCGATAT-ATGAGCC
1 AGTGTAAGACCATGTCT-GGAACATGGCATCGGCCTCGAGATGA-GAGCT
* * * * *
65158613 AGTGTAAGACCATGTTTGAAACATGGCATCAGCATTGAGATGAGAGCT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCGAGATGAGAGCT
* * * * * * *
65158661 AGTGTAAGACCATGTTTGGAACATGGCGTCGGCCTCAACAAGTGAGCC
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCGAGATGAGAGCT
* *
65158709 AGTGGAAGACCATGTCTGGGACATGGCAT
1 AGTGTAAGACCATGTCTGGAACATGGCAT
65158738 TGACATTTTA
Statistics
Matches: 351, Mismatches: 102, Indels: 16
0.75 0.22 0.03
Matches are distributed among these distances:
47 6 0.02
48 339 0.97
49 6 0.02
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCGAGATGAGAGCT
Found at i:65158385 original size:96 final size:96
Alignment explanation
Indices: 65158219--65158737 Score: 660
Period size: 96 Copynumber: 5.4 Consensus size: 96
65158209 CTACTAGGGG
* * * *
65158219 TATGTGAGACAGTGTAAGACCATGTTTGTAGCATGGCATCGGCATTAAGACGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGAGACGAGAGCTAGTGTAA
*
65158284 GACCATGTCTGGGACATGGCATCGGCCTCAA
66 GACCATGTCTGGGACATGGCATCGGCCTCGA
* ** *
65158315 TATGTGAGCTAGTGTAAGATTATGTTTGGAACATGGCATCGGCATTGAGACGAGAGCTAGAGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGAGACGAGAGCTAGTGTAA
* * * *
65158380 AACCATGTCTGAGACATGGAATCAGCCTCGA
66 GACCATGTCTGGGACATGGCATCGGCCTCGA
* * * * *
65158411 TATGTGAGGCAGTATAAGACCATGTTTGAAACATGGCATCGACCTTGAGACGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGAGACGAGAGCTAGTGTAA
* * *
65158476 GACCATGTCTAGTACATAGCATCGGCCTCGA
66 GACCATGTCTGGGACATGGCATCGGCCTCGA
* * * *
65158507 TATGTGAGCCACTATAAGATCATGTTTGGAACATGGCATCGGCATTGAGATGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGAGACGAGAGCTAGTGTAA
* * * *
65158572 GACGATATCTAGGACATGGCATTGGCCTCGA
66 GACCATGTCTGGGACATGGCATCGGCCTCGA
* * * *
65158603 TATATGAGCCAGTGTAAGACCATGTTTGAAACATGGCATCAGCATTGAGATGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGAGACGAGAGCTAGTGTAA
* * * *
65158668 GACCATGTTTGGAACATGGCGTCGGCCTCAA
66 GACCATGTCTGGGACATGGCATCGGCCTCGA
* * * * *
65158699 CAAGTGAGCCAGTGGAAGACCATGTCTGGGACATGGCAT
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCAT
65158738 TGACATTTTA
Statistics
Matches: 361, Mismatches: 62, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
96 361 1.00
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (96 bp):
TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGAGACGAGAGCTAGTGTAA
GACCATGTCTGGGACATGGCATCGGCCTCGA
Found at i:65162642 original size:40 final size:40
Alignment explanation
Indices: 65162583--65162850 Score: 473
Period size: 40 Copynumber: 6.7 Consensus size: 40
65162573 GAGCATTGGA
*
65162583 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
65162623 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
65162663 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
65162703 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
65162743 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
65162783 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
65162823 ATATGTTCGGGCTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
65162851 ATGTGTTTGC
Statistics
Matches: 219, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 219 1.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:65171221 original size:40 final size:40
Alignment explanation
Indices: 65171162--65171427 Score: 455
Period size: 40 Copynumber: 6.7 Consensus size: 40
65171152 GAGCATTGGA
*
65171162 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
65171202 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
65171242 ATATATCCGGGCT-AGACCCGAAGGCAATTATGCGAG-TG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
65171280 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
65171320 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
65171360 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
65171400 ATATGTTCGGGCTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
65171428 ATGTGTTTGC
Statistics
Matches: 216, Mismatches: 8, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
38 15 0.07
39 45 0.21
40 156 0.72
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:65171370 original size:118 final size:120
Alignment explanation
Indices: 65171162--65171427 Score: 464
Period size: 118 Copynumber: 2.2 Consensus size: 120
65171152 GAGCATTGGA
* *
65171162 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
1 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATGATATATCCGGGCTAAAACCCGAAGG
*
65171227 CAATTATGCGAGTTGATATATCCGGGCT-AGACCCGAAGGCAATTATGCGAG-TG
66 CAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
65171280 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATGATATATCCGGGCTAAAACCCGAAGG
1 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATGATATATCCGGGCTAAAACCCGAAGG
65171345 CAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
66 CAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* * *
65171400 ATATGTTCGGGCTAAGACCCGAAGGCAA
1 ATATATCCGGGCTATGACCCGAAGGCAA
65171428 ATGTGTTTGC
Statistics
Matches: 140, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
118 90 0.64
119 23 0.16
120 27 0.19
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.22
Consensus pattern (120 bp):
ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATGATATATCCGGGCTAAAACCCGAAGG
CAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:65178318 original size:27 final size:26
Alignment explanation
Indices: 65178274--65178325 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
65178264 CTCACTGCAA
*
65178274 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
65178301 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
65178326 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:65181963 original size:28 final size:28
Alignment explanation
Indices: 65181923--65182076 Score: 274
Period size: 28 Copynumber: 5.5 Consensus size: 28
65181913 TAAATTGTAC
65181923 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
65181951 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
65181979 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
65182007 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
65182035 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
65182062 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
65182077 GACTTAATAT
Statistics
Matches: 124, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
27 24 0.19
28 100 0.81
ACGTcount: A:0.26, C:0.12, G:0.29, T:0.34
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:65181989 original size:56 final size:56
Alignment explanation
Indices: 65181898--65182076 Score: 279
Period size: 56 Copynumber: 3.2 Consensus size: 56
65181888 GAGATTGGCG
* * * *
65181898 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
*
65181955 CTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
*
65182011 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
*
65182066 CTGAGTGTGCG
1 CTAAGTGTGCG
65182077 GACTTAATAT
Statistics
Matches: 114, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
55 23 0.20
56 76 0.67
57 15 0.13
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (56 bp):
CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
Found at i:65190225 original size:28 final size:28
Alignment explanation
Indices: 65190160--65190310 Score: 223
Period size: 28 Copynumber: 5.4 Consensus size: 28
65190150 GAGATTGGCG
* * * *
65190160 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
65190189 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
65190217 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
65190245 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
65190273 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
65190300 CTGAGTGTGCG
1 CTAAGTGTGCG
65190311 GACTTAATAT
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
27 24 0.21
28 76 0.66
29 15 0.13
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:65191689 original size:46 final size:45
Alignment explanation
Indices: 65191639--65191814 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 45
65191629 TGTTTGGGCA
65191639 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
65191685 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
65191732 TCGGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
65191778 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
65191815 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.62
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:65191794 original size:93 final size:93
Alignment explanation
Indices: 65191635--65191806 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
65191625 AGGATGTTTG
* *
65191635 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
65191700 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
65191728 GGCATCGGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
65191793 TTGAGTCTGAGTTC
66 TTGAGTCCGAGTTC
65191807 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.20, G:0.31, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:65193320 original size:40 final size:40
Alignment explanation
Indices: 65193276--65193705 Score: 702
Period size: 40 Copynumber: 10.8 Consensus size: 40
65193266 CAAGCTCAAT
* * *
65193276 TGCCTTCGGGTCTTAACCCGGGTATAGT-AACTCGCA-AGAA
1 TGCCTTCGGGTTTTAGCCCGGATATA-TCAACTCGCACA-AA
* * *
65193316 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAT
1 TGCCTTCGGGTTTTAGCCCGGATATATCAACTCGCACAAA
* * *
65193356 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGGACAAA
1 TGCCTTCGGGTTTTAGCCCGGATATATCAACTCGCACAAA
65193396 TGCCTTCGGGTTTTAGCCCGGATATATCAACTCGCACAAA
1 TGCCTTCGGGTTTTAGCCCGGATATATCAACTCGCACAAA
* *
65193436 TGCCTTCAGGTTTTAGCCTGGATATATCAACTCGCACAAA
1 TGCCTTCGGGTTTTAGCCCGGATATATCAACTCGCACAAA
65193476 TGCCTTCGGGTTTTAGCCCGGATATATCAACTCGCACAAA
1 TGCCTTCGGGTTTTAGCCCGGATATATCAACTCGCACAAA
65193516 TGCCTTCGGGTTTTAGCCCGGATATATCAACTCGCACAAA
1 TGCCTTCGGGTTTTAGCCCGGATATATCAACTCGCACAAA
*
65193556 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
1 TGCCTTCGGGTTTTAGCCCGGATATATCAACTCGCACAAA
* *
65193596 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
1 TGCCTTCGGGTTTTAGCCCGGATATATCAACTCGCACAAA
65193636 TGCCTTCGGGTTTTAGCCCGGATATATCAACTCGCACAAA
1 TGCCTTCGGGTTTTAGCCCGGATATATCAACTCGCACAAA
65193676 TGCCTTCGGGTTTTAGCCCGGATATATCAA
1 TGCCTTCGGGTTTTAGCCCGGATATATCAA
65193706 TTGCTCATGC
Statistics
Matches: 371, Mismatches: 17, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
39 1 0.00
40 369 0.99
41 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.28
Consensus pattern (40 bp):
TGCCTTCGGGTTTTAGCCCGGATATATCAACTCGCACAAA
Found at i:65201615 original size:40 final size:40
Alignment explanation
Indices: 65201570--65201916 Score: 565
Period size: 40 Copynumber: 8.8 Consensus size: 40
65201560 CAAGCTCAAT
* * * *
65201570 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
* *
65201610 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
*
65201650 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
*
65201690 TGCCTTCGGGTTTTAGCCC-GATATATCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
*
65201729 TGCCTTCGGGTTTTAGCCCGGATATATCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
*
65201769 TGCCTTCGGGTTTTAGCCCGGATATATCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
65201809 TGCCTTCGGGTCTTAGCCCGGATATATCAACT-GCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
65201848 TGCCTTCGGGT-TTAGCCCGGATATATCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
* *
65201887 TGCCTTCAGGTTTTAGCCCGGATATATCAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAA
65201917 TTGCTCATGC
Statistics
Matches: 293, Mismatches: 11, Indels: 6
0.95 0.04 0.02
Matches are distributed among these distances:
38 20 0.07
39 73 0.25
40 200 0.68
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.27
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
Found at i:65201745 original size:119 final size:120
Alignment explanation
Indices: 65201570--65201920 Score: 575
Period size: 119 Copynumber: 3.0 Consensus size: 120
65201560 CAAGCTCAAT
* * * * *
65201570 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTTTTAGCCCGGATAT
* * *
65201635 ATCAACTTGCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
66 ATCAACTCGCACAAATGCCTTCGGGTTTTAGCCCGGATATATCAACTTGCACAAA
*
65201690 TGCCTTCGGGTTTTAGCCC-GATATATCAACTCGCACAAATGCCTTCGGGTTTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTTTTAGCCCGGATAT
*
65201754 ATCAACTCGCACAAATGCCTTCGGGTTTTAGCCCGGATATATCAACTCGCACAAA
66 ATCAACTCGCACAAATGCCTTCGGGTTTTAGCCCGGATATATCAACTTGCACAAA
65201809 TGCCTTCGGGTCTTAGCCCGGATATATCAACT-GCACAAATGCCTTCGGG-TTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTTTTAGCCCGGATAT
*
65201872 ATCAACTCGCACAAATGCCTTCAGGTTTTAGCCCGGATATATCAA-TTGC
66 ATCAACTCGCACAAATGCCTTCGGGTTTTAGCCCGGATATATCAACTTGC
65201921 TCATGCACAC
Statistics
Matches: 217, Mismatches: 13, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
117 3 0.01
118 58 0.27
119 127 0.59
120 29 0.13
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.28
Consensus pattern (120 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTTTTAGCCCGGATAT
ATCAACTCGCACAAATGCCTTCGGGTTTTAGCCCGGATATATCAACTTGCACAAA
Found at i:65204986 original size:42 final size:43
Alignment explanation
Indices: 65204927--65205017 Score: 116
Period size: 42 Copynumber: 2.1 Consensus size: 43
65204917 AAGATTTATG
*
65204927 TGTAAGACCATGCCTGGGAC-ATCGGCATTG-TATTTGATTT-CA
1 TGTAAGACCATGCCTGGGACAAT-GGCATCGATATTTG-TTTACA
* *
65204969 TGTAAGACCTTGTCTGGGACAATGGCATCGATATTTGTTTACA
1 TGTAAGACCATGCCTGGGACAATGGCATCGATATTTGTTTACA
65205012 TGTAAG
1 TGTAAG
65205018 GTTATGTCTA
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
42 27 0.63
43 16 0.37
ACGTcount: A:0.25, C:0.16, G:0.24, T:0.34
Consensus pattern (43 bp):
TGTAAGACCATGCCTGGGACAATGGCATCGATATTTGTTTACA
Found at i:65209067 original size:39 final size:39
Alignment explanation
Indices: 65209022--65209142 Score: 215
Period size: 39 Copynumber: 3.1 Consensus size: 39
65209012 AAGCAAGACA
*
65209022 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
65209061 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
65209100 CTGGAAATGTATCCGAGCTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
65209139 CTGG
1 CTGG
65209143 TAATATAATT
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 79 1.00
ACGTcount: A:0.21, C:0.25, G:0.31, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:65211766 original size:40 final size:40
Alignment explanation
Indices: 65211660--65211798 Score: 122
Period size: 40 Copynumber: 3.4 Consensus size: 40
65211650 AGAATGATTC
* **
65211660 CGCACACTTAGTGCCACCTCAAATAACCAAAGCTATCTCGGTAT
1 CGCACACTTAGTG---CCTCATATAACCAAAGCTAT-TCCATAT
*
65211704 CGCACACTTAGTGCCTCATATAACCAAAGCTATTCCATTT
1 CGCACACTTAGTGCCTCATATAACCAAAGCTATTCCATAT
* * *
65211744 CGTACACTTAGTG-CT-ATTTATAACCGAAA-CTATTTCAAAT
1 CGCACACTTAGTGCCTCA--TATAACC-AAAGCTATTCCATAT
*
65211784 CACACACTTAGTGCC
1 CGCACACTTAGTGCC
65211799 GATCATAGTT
Statistics
Matches: 81, Mismatches: 10, Indels: 11
0.79 0.10 0.11
Matches are distributed among these distances:
38 1 0.01
39 2 0.02
40 42 0.52
41 23 0.28
44 13 0.16
ACGTcount: A:0.32, C:0.29, G:0.12, T:0.28
Consensus pattern (40 bp):
CGCACACTTAGTGCCTCATATAACCAAAGCTATTCCATAT
Found at i:65212847 original size:19 final size:19
Alignment explanation
Indices: 65212825--65212863 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
65212815 TTTTCATCAT
* *
65212825 AGTAAAAGAAAATCATAAA
1 AGTAAAACAAAACCATAAA
65212844 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACCATAAA
65212863 A
1 A
65212864 ATAATTAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.69, C:0.10, G:0.08, T:0.13
Consensus pattern (19 bp):
AGTAAAACAAAACCATAAA
Done.