Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 201 of 356
Found at i:65594431 original size:34 final size:34
Alignment explanation
Indices: 65594386--65594470 Score: 102
Period size: 34 Copynumber: 2.5 Consensus size: 34
65594376 TTGCATATCT
* * *
65594386 ATACTGCTACTGTTACTGAAATGGGCTACGGCCC
1 ATACTGATACTGATACTGAAATGGGCTAAGGCCC
*
65594420 ATACTGATACTGATACTGTAATGGGCTAAGGCCC
1 ATACTGATACTGATACTGAAATGGGCTAAGGCCC
*
65594454 -TAACTGAAACTGA-ACTG
1 AT-ACTGATACTGATACTG
65594471 TTACTGATTC
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
33 5 0.11
34 40 0.89
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (34 bp):
ATACTGATACTGATACTGAAATGGGCTAAGGCCC
Found at i:65596502 original size:49 final size:49
Alignment explanation
Indices: 65596332--65596640 Score: 171
Period size: 49 Copynumber: 6.5 Consensus size: 49
65596322 AATGCTGACA
** ** * *
65596332 CCATGTCCCAGACATGGTCTTACACTGGCTAGCACAT-TGAA-GTCGATG
1 CCATGTCCCAGACA-GGTCTTACACTAACTCTCATATATCAAGGTCGATG
* * * *
65596380 CCGTGTCCCAGACAGGTCTTACACAAACTTTCATATATCGAAGAT-GATG
1 CCATGTCCCAGACAGGTCTTACACTAACTCTCATATATC-AAGGTCGATG
* * *
65596429 CCATGTCCCAGACAGATCTTACACTAGCTCTCATCTATC-AGTGTCGATG
1 CCATGTCCCAGACAGGTCTTACACTAACTCTCATATATCAAG-GTCGATG
* * * * * *
65596478 CCATGTCCCAGATAGGTCTTACACTGA--CACACA-A-CAAGCT-GACG
1 CCATGTCCCAGACAGGTCTTACACTAACTCTCATATATCAAGGTCGATG
* * * * * * *
65596522 TCATGTCCCAGACAGGTTTTACACTAGCT-T-GTATGTCCTGAGGCCGATG
1 CCATGTCCCAGACAGGTCTTACACTAACTCTCATATAT-C-AAGGTCGATG
* * * * * *
65596571 -CATGTCCCAGACATGTCTTACACTAGCTCTC--GTCTCAATGTCAATG
1 CCATGTCCCAGACAGGTCTTACACTAACTCTCATATATCAAGGTCGATG
*
65596617 -CATGTCCCAGACATGTCTTACACT
1 CCATGTCCCAGACAGGTCTTACACT
65596641 GGCACTCATG
Statistics
Matches: 200, Mismatches: 46, Indels: 32
0.72 0.17 0.12
Matches are distributed among these distances:
44 26 0.13
45 2 0.01
46 33 0.17
47 23 0.12
48 45 0.22
49 70 0.35
50 1 0.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (49 bp):
CCATGTCCCAGACAGGTCTTACACTAACTCTCATATATCAAGGTCGATG
Found at i:65596669 original size:46 final size:48
Alignment explanation
Indices: 65596563--65596689 Score: 156
Period size: 46 Copynumber: 2.7 Consensus size: 48
65596553 TATGTCCTGA
* * *
65596563 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGT
1 GGCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCG-ATCAATGT
* *
65596612 ---CAATGCATGTCCCAGACATGTCTTACACTGGCACTC-AT-GATGT
1 GGCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCGATCAATGT
*
65596655 GGCCGATGCTTGTCCCAGACATGTCTTACACTGGC
1 GGCCGATGCATGTCCCAGACATGTCTTACACTGGC
65596690 TCACATACCA
Statistics
Matches: 68, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
43 4 0.06
44 1 0.01
46 63 0.93
ACGTcount: A:0.21, C:0.30, G:0.21, T:0.28
Consensus pattern (48 bp):
GGCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCGATCAATGT
Found at i:65599543 original size:46 final size:46
Alignment explanation
Indices: 65599471--65599646 Score: 157
Period size: 46 Copynumber: 3.8 Consensus size: 46
65599461 AATTTGGGCA
*
65599471 TCCGCACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
65599517 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
* *
65599562 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-A
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
65599609 ACCTGAGCTTAG-TGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAAC-TCGTTGAGTTGAGTCCGAGTTCACTTATGG
65599647 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 12, Indels: 22
0.76 0.09 0.16
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 5 0.05
46 57 0.53
47 30 0.28
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:65599626 original size:93 final size:93
Alignment explanation
Indices: 65599467--65599639 Score: 262
Period size: 93 Copynumber: 1.9 Consensus size: 93
65599457 CGAAAATTTG
** *
65599467 GGCATCCGCACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
1 GGCATCCGCACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACAACCGAACTAGTTGAG
65599532 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
65599560 GGCATCCG-AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-AACCTGAGCTTAG-T
1 GGCATCCGCA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACAACC-GAAC-TAGTT
65599622 GAGTTGAGTCCGAGTTCG
63 GAGTTGAGTCCGAGTTCG
65599640 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
92 3 0.04
93 68 0.93
94 2 0.03
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGCACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACAACCGAACTAGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:65602652 original size:30 final size:29
Alignment explanation
Indices: 65602618--65602674 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 29
65602608 ATAGTATCGT
65602618 ATCTTGGATTTCTTTATTCTGGGTTTCTCA
1 ATCTTGGATTTCTTTATTC-GGGTTTCTCA
* *
65602648 ATCTTTGATTTCTTTATTCGGTTTTCT
1 ATCTTGGATTTCTTTATTCGGGTTTCT
65602675 TGTTATCTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 7 0.28
30 18 0.72
ACGTcount: A:0.12, C:0.16, G:0.14, T:0.58
Consensus pattern (29 bp):
ATCTTGGATTTCTTTATTCGGGTTTCTCA
Found at i:65607402 original size:27 final size:27
Alignment explanation
Indices: 65607371--65607424 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
65607361 TGCCTCTCCG
65607371 ATGATAGAATTTGCCTGCAACAACAAT
1 ATGATAGAATTTGCCTGCAACAACAAT
65607398 ATGATAGAATTTGCCTGCAACAACAAT
1 ATGATAGAATTTGCCTGCAACAACAAT
65607425 TTTCAGTCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.41, C:0.19, G:0.15, T:0.26
Consensus pattern (27 bp):
ATGATAGAATTTGCCTGCAACAACAAT
Found at i:65611095 original size:21 final size:21
Alignment explanation
Indices: 65611069--65611112 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
65611059 GATTCCCTAG
65611069 AGGTATTATTGAAGATGTGCT
1 AGGTATTATTGAAGATGTGCT
65611090 AGGTATTATTGAAGATGTGCT
1 AGGTATTATTGAAGATGTGCT
65611111 AG
1 AG
65611113 TTAAAATTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.30, C:0.05, G:0.30, T:0.36
Consensus pattern (21 bp):
AGGTATTATTGAAGATGTGCT
Found at i:65611121 original size:21 final size:21
Alignment explanation
Indices: 65611076--65611122 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
65611066 TAGAGGTATT
**
65611076 ATTGAAGATGTGCTAGGTATT
1 ATTGAAGATGTGCTAGGTAAA
*
65611097 ATTGAAGATGTGCTAGTTAAA
1 ATTGAAGATGTGCTAGGTAAA
65611118 ATTGA
1 ATTGA
65611123 TAAATTTATA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.34, C:0.04, G:0.26, T:0.36
Consensus pattern (21 bp):
ATTGAAGATGTGCTAGGTAAA
Found at i:65612117 original size:55 final size:55
Alignment explanation
Indices: 65612017--65612155 Score: 147
Period size: 55 Copynumber: 2.5 Consensus size: 55
65612007 CAATATGGAT
* * * * * * * *
65612017 GTGGTCGAGCCTGCTAAAACAACACAGGCGTGT-AACACGCCCGTGTGGAAGAACT
1 GTGGTCGAACCTGTTAAAATAACACGGGCGT-TCGACACACCCGTGTGGAACAACC
* *
65612072 GTGAG-CGAACCTGTTAAAATAGCACGGGCGTTCGACACACCCGTGTGGAACACCC
1 GTG-GTCGAACCTGTTAAAATAACACGGGCGTTCGACACACCCGTGTGGAACAACC
*
65612127 GTGGTCGAACCTGTTAAATTAACACGGGC
1 GTGGTCGAACCTGTTAAAATAACACGGGC
65612156 ATGGGAGAAA
Statistics
Matches: 69, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
54 2 0.03
55 66 0.96
56 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.28, T:0.18
Consensus pattern (55 bp):
GTGGTCGAACCTGTTAAAATAACACGGGCGTTCGACACACCCGTGTGGAACAACC
Found at i:65613254 original size:40 final size:39
Alignment explanation
Indices: 65613209--65613401 Score: 260
Period size: 40 Copynumber: 4.8 Consensus size: 39
65613199 TATAACTACA
65613209 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATATC-ACT
* *
65613249 CGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCACT
* * * *
65613289 AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATATC-ACT
* *
65613329 CGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCACT
* *
65613369 AGCACAATTGCCTTCGGGTCTTAACCCGGATAT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAT
65613402 CATTCAAATG
Statistics
Matches: 132, Mismatches: 18, Indels: 7
0.84 0.11 0.04
Matches are distributed among these distances:
39 4 0.03
40 121 0.92
41 7 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCACT
Found at i:65613317 original size:80 final size:80
Alignment explanation
Indices: 65613209--65613401 Score: 350
Period size: 80 Copynumber: 2.4 Consensus size: 80
65613199 TATAACTACA
* * *
65613209 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 AGCACAATTGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
65613274 CCGGATAAAATCACT
66 CCGGATAAAATCACT
*
65613289 AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 AGCACAATTGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
65613354 CCGGATAAAATCACT
66 CCGGATAAAATCACT
65613369 AGCACAATTGCCTTCGGGTCTTAACCCGGATAT
1 AGCACAATTGCCTTCGGGTCTTAACCCGGATAT
65613402 CATTCAAATG
Statistics
Matches: 108, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
80 108 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
AGCACAATTGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
CCGGATAAAATCACT
Found at i:65615275 original size:27 final size:27
Alignment explanation
Indices: 65615245--65615422 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
65615235 ATATTGAGTC
* * * *
65615245 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
65615272 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
65615299 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
65615327 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
65615354 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
65615381 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
65615408 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
65615423 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:65615384 original size:82 final size:81
Alignment explanation
Indices: 65615266--65615421 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
65615256 TGCTATATAA
* *
65615266 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
65615331 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
65615348 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
65615412 CACTTAGTGC
65 CACTTAGTGC
65615422 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:65615921 original size:12 final size:12
Alignment explanation
Indices: 65615904--65615930 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
65615894 ATGGCATACT
65615904 TATGTATATATA
1 TATGTATATATA
65615916 TATGTATATATA
1 TATGTATATATA
65615928 TAT
1 TAT
65615931 ACTTCGGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (12 bp):
TATGTATATATA
Found at i:65624551 original size:40 final size:39
Alignment explanation
Indices: 65624487--65624698 Score: 246
Period size: 40 Copynumber: 5.3 Consensus size: 39
65624477 TCTTCGGAAT
* *
65624487 TTAG-CCGGATATAACTACAAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
*
65624526 TTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
* *
65624566 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
* * * * **
65624606 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTTAGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
* *
65624646 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
*
65624686 TTAACCCGGATAT
1 TTAGCCCGGATAT
65624699 CATTCAAATG
Statistics
Matches: 144, Mismatches: 25, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 8 0.06
40 129 0.90
41 7 0.05
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (39 bp):
TTAGCCCGGATATATCACTAGCACAAATGCCTTCGGGTC
Found at i:65624614 original size:80 final size:80
Alignment explanation
Indices: 65624506--65624698 Score: 332
Period size: 80 Copynumber: 2.4 Consensus size: 80
65624496 TATAACTACA
* * * *
65624506 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 AGCACAATTGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATGCCTTCAGGTCTTAGC
65624571 CCGGATAAAATCACT
66 CCGGATAAAATCACT
* *
65624586 AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATGCCTTTAGGTCTTAGC
1 AGCACAATTGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATGCCTTCAGGTCTTAGC
65624651 CCGGATAAAATCACT
66 CCGGATAAAATCACT
65624666 AGCACAATTGCCTTCGGGTCTTAACCCGGATAT
1 AGCACAATTGCCTTCGGGTCTTAACCCGGATAT
65624699 CATTCAAATG
Statistics
Matches: 106, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
80 106 1.00
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (80 bp):
AGCACAATTGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATGCCTTCAGGTCTTAGC
CCGGATAAAATCACT
Found at i:65626749 original size:27 final size:27
Alignment explanation
Indices: 65626718--65626895 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
65626708 TAAATTGTAC
65626718 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
65626745 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
65626771 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
65626799 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * *
65626827 AGCACTAAGTGTACGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
65626854 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
65626881 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
65626896 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 105 0.83
28 22 0.17
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:65626832 original size:82 final size:81
Alignment explanation
Indices: 65626719--65626874 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
65626709 AAATTGTACA
* * *
65626719 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTACGAAATGAATACGTA-GCACTAAGTG
65626783 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
65626800 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTACGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTACGAAATGAATACGTAGCACTAAGTG
*
65626865 TGCGAGTTGA
65 TGCGAATTGA
65626875 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTACGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:65626886 original size:82 final size:81
Alignment explanation
Indices: 65626715--65626895 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
65626705 GATTAAATTG
* * *
65626715 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTACGAAATGAATACGATGCACTAA
65626780 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
65626796 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTACGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTACGAAATGAATACGAT-GCACT
* **
65626860 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
65626878 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
65626896 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTACGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:65631722 original size:40 final size:40
Alignment explanation
Indices: 65631668--65631943 Score: 453
Period size: 40 Copynumber: 6.8 Consensus size: 40
65631658 ATTACCACAA
* ** *
65631668 GCACAATTGCCTTCGGGTCTTAGCCCGGGCATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
65631708 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
65631748 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
65631788 ACACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
65631828 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGG--ATATATCAACTC
65631870 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
65631910 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAT
65631944 ATACAAATGC
Statistics
Matches: 220, Mismatches: 14, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
40 180 0.82
42 40 0.18
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:65636859 original size:27 final size:27
Alignment explanation
Indices: 65636826--65636924 Score: 135
Period size: 27 Copynumber: 3.7 Consensus size: 27
65636816 TAAAGATTCC
65636826 ATCGGGACATTAAACACAAGGTAGTCA
1 ATCGGGACATTAAACACAAGGTAGTCA
* * *
65636853 ATTGGGACATTAAACAGAAGGTAGTCT
1 ATCGGGACATTAAACACAAGGTAGTCA
* * *
65636880 ATCAGGACATTAAACACGAGGTAGTCC
1 ATCGGGACATTAAACACAAGGTAGTCA
*
65636907 ATCGGGACATTCAACACA
1 ATCGGGACATTAAACACA
65636925 GGAAGTCCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 61 1.00
ACGTcount: A:0.38, C:0.19, G:0.22, T:0.20
Consensus pattern (27 bp):
ATCGGGACATTAAACACAAGGTAGTCA
Found at i:65639065 original size:38 final size:38
Alignment explanation
Indices: 65638997--65639077 Score: 94
Period size: 38 Copynumber: 2.2 Consensus size: 38
65638987 AAACAAAAAT
*
65638997 TGAGT-GAATAAAAGCAATGTGAGGGTTAAAAGCAAAG
1 TGAGTGGAATAAAAGCAATGTGAGGGATAAAAGCAAAG
* * **
65639034 TGAGTGGAATAAAAGC-ATGGTTAGTGATAAAAGCATTG
1 TGAGTGGAATAAAAGCAAT-GTGAGGGATAAAAGCAAAG
65639072 TGAGTG
1 TGAGTG
65639078 AAAGAGTGAA
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
37 7 0.19
38 30 0.81
ACGTcount: A:0.41, C:0.05, G:0.31, T:0.23
Consensus pattern (38 bp):
TGAGTGGAATAAAAGCAATGTGAGGGATAAAAGCAAAG
Found at i:65639077 original size:18 final size:18
Alignment explanation
Indices: 65638997--65639078 Score: 76
Period size: 18 Copynumber: 4.4 Consensus size: 18
65638987 AAACAAAAAT
65638997 TGAGTGAATAAAAGCAATG
1 TGAGTG-ATAAAAGCAATG
* * *
65639016 TGAGGGTTAAAAGCAAAG
1 TGAGTGATAAAAGCAATG
65639034 TGAGTGGAATAAAAGC-ATGG
1 TGAGT-G-ATAAAAGCAAT-G
* *
65639054 TTAGTGATAAAAGCATTG
1 TGAGTGATAAAAGCAATG
65639072 TGAGTGA
1 TGAGTGA
65639079 AAGAGTGAAA
Statistics
Matches: 50, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
18 29 0.58
19 9 0.18
20 12 0.24
ACGTcount: A:0.41, C:0.05, G:0.30, T:0.23
Consensus pattern (18 bp):
TGAGTGATAAAAGCAATG
Found at i:65642289 original size:15 final size:15
Alignment explanation
Indices: 65642269--65642301 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
65642259 TTTAATTCGA
*
65642269 TATTTACATCAATTG
1 TATTTACACCAATTG
65642284 TATTTACACCAATTG
1 TATTTACACCAATTG
65642299 TAT
1 TAT
65642302 ATTCGAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.33, C:0.15, G:0.06, T:0.45
Consensus pattern (15 bp):
TATTTACACCAATTG
Found at i:65648634 original size:42 final size:42
Alignment explanation
Indices: 65648496--65648634 Score: 152
Period size: 42 Copynumber: 3.3 Consensus size: 42
65648486 AACCCCATGG
** * * *
65648496 TGGTCTTACATGGGATCTCATATCGATGCCATATCTCAGATA
1 TGGTCTTACATGAAATCTCATATCAACGCCATATCCCAGATA
* * * * * * * **
65648538 TGGTCTTATACGAATTCTCGTTTCAACGCCTTGTCCCAGACG
1 TGGTCTTACATGAAATCTCATATCAACGCCATATCCCAGATA
65648580 TGGTCTTACATGAAATCTCATATCAACGCCATATCCCAGATA
1 TGGTCTTACATGAAATCTCATATCAACGCCATATCCCAGATA
65648622 TGGTCTTACATGA
1 TGGTCTTACATGA
65648635 TAAATCATAC
Statistics
Matches: 74, Mismatches: 23, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
42 74 1.00
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.32
Consensus pattern (42 bp):
TGGTCTTACATGAAATCTCATATCAACGCCATATCCCAGATA
Found at i:65653093 original size:24 final size:24
Alignment explanation
Indices: 65653061--65653108 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
65653051 TTCAGGTGAT
*
65653061 AGTGTGATCGATGCCTCCGACGTC
1 AGTGTGATCGATGCCCCCGACGTC
65653085 AGTGTGATCGATGCCCCCGACGTC
1 AGTGTGATCGATGCCCCCGACGTC
65653109 CTTTAATCCC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.17, C:0.31, G:0.29, T:0.23
Consensus pattern (24 bp):
AGTGTGATCGATGCCCCCGACGTC
Found at i:65653596 original size:48 final size:47
Alignment explanation
Indices: 65653533--65653703 Score: 177
Period size: 48 Copynumber: 3.6 Consensus size: 47
65653523 ATTGTTGATA
* * *
65653533 CCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCCGATG
1 CCATGTCCCAAACATGGTCTTACACTAGCTCTCAT-TCGAGGCCGATG
* * *
65653581 CCATGTCCCAGACATGGTCTTACACTAGCTCTTATTAC-ATTGCCGATG
1 CCATGTCCCAAACATGGTCTTACACTAGCTCTCATT-CGA-GGCCGATG
* * * * *
65653629 CCATGTTCCAAACATGGTCTTATACTAGCTCTCAAAT-GTGGTCGATG
1 CCATGTCCCAAACATGGTCTTACACTAGCTCTC-ATTCGAGGCCGATG
*
65653676 CCATGTCCCAGACATGGT-TTACACTAGC
1 CCATGTCCCAAACATGGTCTTACACTAGC
65653704 ACATATATCA
Statistics
Matches: 102, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
46 9 0.09
47 24 0.24
48 67 0.66
49 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (47 bp):
CCATGTCCCAAACATGGTCTTACACTAGCTCTCATTCGAGGCCGATG
Found at i:65654089 original size:40 final size:40
Alignment explanation
Indices: 65654045--65654123 Score: 158
Period size: 40 Copynumber: 2.0 Consensus size: 40
65654035 GAGGAGGAAG
65654045 ATGAGAGTTGATATCTTTTTCTCCTTATTTTATTTTATTA
1 ATGAGAGTTGATATCTTTTTCTCCTTATTTTATTTTATTA
65654085 ATGAGAGTTGATATCTTTTTCTCCTTATTTTATTTTATT
1 ATGAGAGTTGATATCTTTTTCTCCTTATTTTATTTTATT
65654124 TCTAGTCAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.22, C:0.10, G:0.10, T:0.58
Consensus pattern (40 bp):
ATGAGAGTTGATATCTTTTTCTCCTTATTTTATTTTATTA
Found at i:65659659 original size:20 final size:20
Alignment explanation
Indices: 65659636--65659698 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 20
65659626 GATATAAAAA
65659636 AGAAGAAAAACAAAAACCAC
1 AGAAGAAAAACAAAAACCAC
**
65659656 AGAA-AACAAACCTAAACCA-
1 AGAAGAA-AAACAAAAACCAC
***
65659675 ATCTGAAAAACAAAAACCAC
1 AGAAGAAAAACAAAAACCAC
65659695 AGAA
1 AGAA
65659699 AACAAACCTA
Statistics
Matches: 30, Mismatches: 10, Indels: 6
0.65 0.22 0.13
Matches are distributed among these distances:
19 13 0.43
20 17 0.57
ACGTcount: A:0.65, C:0.22, G:0.08, T:0.05
Consensus pattern (20 bp):
AGAAGAAAAACAAAAACCAC
Found at i:65659661 original size:16 final size:16
Alignment explanation
Indices: 65659642--65659704 Score: 54
Period size: 16 Copynumber: 3.5 Consensus size: 16
65659632 AAAAAGAAGA
65659642 AAAACAAAAACCACAG
1 AAAACAAAAACCACAG
*
65659658 AAAACAAACCTAAACCAATCTG
1 AAAAC-AA---AAACC-A-CAG
65659680 AAAAACAAAAACCACAG
1 -AAAACAAAAACCACAG
65659697 AAAACAAA
1 AAAACAAA
65659705 CCTAAACCAA
Statistics
Matches: 38, Mismatches: 2, Indels: 14
0.70 0.04 0.26
Matches are distributed among these distances:
16 13 0.34
17 4 0.11
18 1 0.03
19 5 0.13
20 5 0.13
21 1 0.03
22 4 0.11
23 5 0.13
ACGTcount: A:0.67, C:0.24, G:0.05, T:0.05
Consensus pattern (16 bp):
AAAACAAAAACCACAG
Found at i:65659683 original size:39 final size:39
Alignment explanation
Indices: 65659640--65659717 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
65659630 TAAAAAAGAA
65659640 GAAAAACAAAAACCACAGAAAACAAACCTAAACCAATCT
1 GAAAAACAAAAACCACAGAAAACAAACCTAAACCAATCT
65659679 GAAAAACAAAAACCACAGAAAACAAACCTAAACCAATCT
1 GAAAAACAAAAACCACAGAAAACAAACCTAAACCAATCT
65659718 AACACAGGCA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.62, C:0.26, G:0.05, T:0.08
Consensus pattern (39 bp):
GAAAAACAAAAACCACAGAAAACAAACCTAAACCAATCT
Found at i:65659711 original size:20 final size:20
Alignment explanation
Indices: 65659649--65659713 Score: 66
Period size: 20 Copynumber: 3.3 Consensus size: 20
65659639 AGAAAAACAA
65659649 AAACCACAGAAAACAAACCT
1 AAACCACAGAAAACAAACCT
*
65659669 AAACCAATCTGAAAA-ACAA---
1 AAACC-A-CAGAAAACA-AACCT
65659688 AAACCACAGAAAACAAACCT
1 AAACCACAGAAAACAAACCT
65659708 AAACCA
1 AAACCA
65659714 ATCTAACACA
Statistics
Matches: 36, Mismatches: 2, Indels: 14
0.69 0.04 0.27
Matches are distributed among these distances:
17 8 0.22
18 2 0.06
19 5 0.14
20 11 0.31
21 2 0.06
22 8 0.22
ACGTcount: A:0.62, C:0.28, G:0.05, T:0.06
Consensus pattern (20 bp):
AAACCACAGAAAACAAACCT
Found at i:65663549 original size:45 final size:46
Alignment explanation
Indices: 65663500--65663627 Score: 213
Period size: 46 Copynumber: 2.8 Consensus size: 46
65663490 TGGTTGAGCA
*
65663500 TCCGAACTCGTTGAGTTGAGTCCGA-TTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
65663545 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
65663591 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
65663628 GCGGTTACAT
Statistics
Matches: 78, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
45 25 0.32
46 53 0.68
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:65678927 original size:27 final size:27
Alignment explanation
Indices: 65678897--65678951 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
65678887 GATGAAAGTA
65678897 TGTGGCCACCGGTATCGAGCGTTCCAT
1 TGTGGCCACCGGTATCGAGCGTTCCAT
65678924 TGTGGCCACCGGTATCGAGCGTTCCAT
1 TGTGGCCACCGGTATCGAGCGTTCCAT
65678951 T
1 T
65678952 AAAATTGTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.15, C:0.29, G:0.29, T:0.27
Consensus pattern (27 bp):
TGTGGCCACCGGTATCGAGCGTTCCAT
Found at i:65679958 original size:11 final size:11
Alignment explanation
Indices: 65679944--65679969 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
65679934 TAAGTGGGAA
65679944 TTGAGAGAAAT
1 TTGAGAGAAAT
65679955 TTGAGAGAAAT
1 TTGAGAGAAAT
65679966 TTGA
1 TTGA
65679970 AAATTGTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.42, C:0.00, G:0.27, T:0.31
Consensus pattern (11 bp):
TTGAGAGAAAT
Found at i:65681417 original size:93 final size:92
Alignment explanation
Indices: 65681259--65681428 Score: 277
Period size: 93 Copynumber: 1.8 Consensus size: 92
65681249 GGATGGTTGA
* *
65681259 GCATCCGAACTCGTTGAGTTGAGTCGAGTTCACCTATGGATGCGAATGTCCGAACTCCTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCGAGTTCACCTATGGATGCGAACGCCCGAACTCCTTGAGTT
*
65681324 GAGTCTGAGTTCGTGAGATGTAACTAG
66 GAGTCCGAGTTCGTGAGATGTAACTAG
* * *
65681351 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGT-CGAGTTCACCTATGGATGCGAACGCCCGAACTCCTTGAGT
65681416 TGAGTCCGAGTTC
65 TGAGTCCGAGTTC
65681429 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
92 24 0.34
93 47 0.66
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCGAGTTCACCTATGGATGCGAACGCCCGAACTCCTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:65681422 original size:46 final size:46
Alignment explanation
Indices: 65681263--65681433 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
65681253 GGTTGAGCAT
* * *
65681263 CCGAACTCGTTGAGTTGAGT-CGAGTTCACCTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * * * *
65681308 CCGAACTCCTTGAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
65681353 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
65681401 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
65681434 GGGGCGGGTT
Statistics
Matches: 102, Mismatches: 14, Indels: 19
0.76 0.10 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 21 0.21
46 38 0.37
47 26 0.25
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:65689161 original size:22 final size:21
Alignment explanation
Indices: 65689110--65689162 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 21
65689100 ACAATATTAA
*
65689110 TTTTTTTATATATTATAGGCT
1 TTTTTTTATATATTATAGACT
* * *
65689131 TCTTATTTATATATTATATATT
1 T-TTTTTTATATATTATAGACT
65689153 TTTTGTTTAT
1 TTTT-TTTAT
65689163 GTTTGTTACG
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
21 3 0.12
22 22 0.88
ACGTcount: A:0.25, C:0.04, G:0.06, T:0.66
Consensus pattern (21 bp):
TTTTTTTATATATTATAGACT
Found at i:65690320 original size:46 final size:46
Alignment explanation
Indices: 65690267--65690449 Score: 294
Period size: 46 Copynumber: 4.0 Consensus size: 46
65690257 TATATATACA
* *
65690267 CATCTCATACATATTTCGCATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
65690313 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
65690359 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
65690405 CATCTCATACACATTTTGCATTAGCCATTCGACTTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
65690450 ATACACTTCC
Statistics
Matches: 129, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 129 1.00
ACGTcount: A:0.25, C:0.31, G:0.09, T:0.36
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:65690494 original size:47 final size:47
Alignment explanation
Indices: 65690423--65690798 Score: 544
Period size: 47 Copynumber: 8.1 Consensus size: 47
65690413 ACACATTTTG
* * * * * * *
65690423 CATTAGCCATTCGACTTTACCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
*
65690470 CATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
65690517 CATTGGCCATTCGGCCTTATCATATATATGCATATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
65690564 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
65690611 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
65690658 CATTGGCCATTCGGCCTTATCAC--ACATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
65690703 CATTGGTCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * * **
65690750 CATTTGCCATTCGG-CTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
65690796 CAT
1 CAT
65690799 AAAATCCTAA
Statistics
Matches: 303, Mismatches: 23, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
45 43 0.14
46 32 0.11
47 228 0.75
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:65690539 original size:25 final size:25
Alignment explanation
Indices: 65690511--65690590 Score: 64
Period size: 24 Copynumber: 3.4 Consensus size: 25
65690501 ATGTTCACAT
65690511 TCATCACATTGGCCATTCGGCCTTA
1 TCATCACATTGGCCATTCGGCCTTA
* * * *
65690536 TCAT-ATATAT-GCATATTC--ACAT-
1 TCATCACAT-TGGC-CATTCGGCCTTA
65690558 TCATCACATTGGCCATTCGGCCTTA
1 TCATCACATTGGCCATTCGGCCTTA
65690583 TCA-CACAT
1 TCATCACAT
65690591 ATGCATGTTC
Statistics
Matches: 40, Mismatches: 8, Indels: 15
0.63 0.13 0.24
Matches are distributed among these distances:
22 9 0.22
23 7 0.17
24 12 0.30
25 12 0.30
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (25 bp):
TCATCACATTGGCCATTCGGCCTTA
Found at i:65690611 original size:25 final size:25
Alignment explanation
Indices: 65690582--65690659 Score: 69
Period size: 25 Copynumber: 3.2 Consensus size: 25
65690572 ATTCGGCCTT
65690582 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
* *
65690607 AT--CACAT-TGGCCA--TTCGGCCTT-
1 ATCACACATAT-G-CATGTTC-ACATTC
65690629 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
65690654 ATCACA
1 ATCACA
65690660 TTGGCCATTC
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 6 0.15
23 11 0.28
24 11 0.28
25 12 0.30
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.31
Consensus pattern (25 bp):
ATCACACATATGCATGTTCACATTC
Found at i:65693562 original size:28 final size:28
Alignment explanation
Indices: 65693465--65693562 Score: 92
Period size: 28 Copynumber: 3.4 Consensus size: 28
65693455 ATATTTCGAC
*
65693465 CCTTGAACTTATTCATTTGTATCTAGTTGGT
1 CCTTGAACTT-TT--TTTGTACCTAGTTGGT
** *
65693496 -CTCT-AAAATTTGTTGTACCTAGTTGGT
1 CCT-TGAACTTTTTTTGTACCTAGTTGGT
* *
65693523 CCTTCAATTTTTTTTGTACCTAGTTGGT
1 CCTTGAACTTTTTTTGTACCTAGTTGGT
65693551 CCTTGAACTTTT
1 CCTTGAACTTTT
65693563 ATTCAGTCAA
Statistics
Matches: 55, Mismatches: 9, Indels: 9
0.75 0.12 0.12
Matches are distributed among these distances:
27 15 0.27
28 32 0.58
29 2 0.04
30 5 0.09
31 1 0.02
ACGTcount: A:0.18, C:0.17, G:0.15, T:0.49
Consensus pattern (28 bp):
CCTTGAACTTTTTTTGTACCTAGTTGGT
Found at i:65694508 original size:29 final size:29
Alignment explanation
Indices: 65694469--65694524 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
65694459 TTTTTCATAT
*
65694469 TCATTTAATTTACTCTTGAAATCTATTAG
1 TCATTTAATTTACTCTTCAAATCTATTAG
*
65694498 TCATTTGATTTACTCTTCAAATCTATT
1 TCATTTAATTTACTCTTCAAATCTATT
65694525 CAAATCTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.29, C:0.16, G:0.05, T:0.50
Consensus pattern (29 bp):
TCATTTAATTTACTCTTCAAATCTATTAG
Found at i:65696441 original size:29 final size:29
Alignment explanation
Indices: 65696377--65696442 Score: 80
Period size: 28 Copynumber: 2.3 Consensus size: 29
65696367 TCAAAAAATA
* *
65696377 TTAATTTTTTAAATATTTATCAGGTTAGG
1 TTAATTTTTTAAATATTTATCAGATTAAG
* * *
65696406 TT-GTTTTTTAAATATTTGTGAGATTAAG
1 TTAATTTTTTAAATATTTATCAGATTAAG
65696434 TTAATTTTT
1 TTAATTTTT
65696443 GAAAATACAC
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
28 23 0.77
29 7 0.23
ACGTcount: A:0.29, C:0.02, G:0.14, T:0.56
Consensus pattern (29 bp):
TTAATTTTTTAAATATTTATCAGATTAAG
Found at i:65696653 original size:23 final size:22
Alignment explanation
Indices: 65696627--65696701 Score: 105
Period size: 23 Copynumber: 3.2 Consensus size: 22
65696617 TTACGAAATT
65696627 TTCTTTTTTTAACTTTCTCTCAA
1 TTCTTTTTTTAA-TTTCTCTCAA
65696650 TTCTATTTTTTAATTTCTCTCAA
1 TTCT-TTTTTTAATTTCTCTCAA
65696673 TTCTATTTTTTTAATTTTCTCTCAA
1 TTC--TTTTTTTAA-TTTCTCTCAA
65696698 TTCT
1 TTCT
65696702 CTCAATTTTT
Statistics
Matches: 48, Mismatches: 0, Indels: 8
0.86 0.00 0.14
Matches are distributed among these distances:
23 18 0.38
24 16 0.33
25 14 0.29
ACGTcount: A:0.19, C:0.19, G:0.00, T:0.63
Consensus pattern (22 bp):
TTCTTTTTTTAATTTCTCTCAA
Found at i:65696700 original size:25 final size:24
Alignment explanation
Indices: 65696630--65696701 Score: 119
Period size: 24 Copynumber: 3.0 Consensus size: 24
65696620 CGAAATTTTC
65696630 TTTTTTTAACTTTCTCTCAATTCTA
1 TTTTTTTAA-TTTCTCTCAATTCTA
65696655 -TTTTTTAATTTCTCTCAATTCTA
1 TTTTTTTAATTTCTCTCAATTCTA
65696678 TTTTTTTAATTTTCTCTCAATTCT
1 TTTTTTTAA-TTTCTCTCAATTCT
65696702 CTCAATTTTT
Statistics
Matches: 45, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
23 15 0.33
24 16 0.36
25 14 0.31
ACGTcount: A:0.19, C:0.18, G:0.00, T:0.62
Consensus pattern (24 bp):
TTTTTTTAATTTCTCTCAATTCTA
Found at i:65696720 original size:21 final size:21
Alignment explanation
Indices: 65696696--65696736 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
65696686 ATTTTCTCTC
*
65696696 AATTCTCTCAATTTTTATTAA
1 AATTCTCTCAAGTTTTATTAA
* *
65696717 AATTGTCTTAAGTTTTATTA
1 AATTCTCTCAAGTTTTATTA
65696737 TTATTTAATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.10, G:0.05, T:0.54
Consensus pattern (21 bp):
AATTCTCTCAAGTTTTATTAA
Found at i:65699768 original size:20 final size:19
Alignment explanation
Indices: 65699734--65699796 Score: 72
Period size: 19 Copynumber: 3.3 Consensus size: 19
65699724 AAATCATTCG
* *
65699734 ATAACAGTAACTCATCCGT
1 ATAACAATAATTCATCCGT
* * *
65699753 TTAAACAATACTTCATCCAT
1 AT-AACAATAATTCATCCGT
65699773 ATAACAATAATTCATCCGT
1 ATAACAATAATTCATCCGT
65699792 ATAAC
1 ATAAC
65699797 GCATAGATTT
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
19 21 0.60
20 14 0.40
ACGTcount: A:0.41, C:0.24, G:0.05, T:0.30
Consensus pattern (19 bp):
ATAACAATAATTCATCCGT
Found at i:65700047 original size:26 final size:24
Alignment explanation
Indices: 65699955--65700060 Score: 108
Period size: 24 Copynumber: 4.3 Consensus size: 24
65699945 AGCTCCTCCT
* *
65699955 GAGCTGATGGACAGTAAGCTC-TATT
1 GAGCTGA-GAACAGTAAGCTCTTA-C
*
65699980 GAGCTGA-AACAGTAAGCTCTGAC
1 GAGCTGAGAACAGTAAGCTCTTAC
*
65700003 GAGCTGAGAACAGTAAGCTTTTAC
1 GAGCTGAGAACAGTAAGCTCTTAC
* *
65700027 GAGCTGATATATCAGTAAGCTCATAC
1 GAGCTGAGA-A-CAGTAAGCTCTTAC
65700053 GAGCTGAG
1 GAGCTGAG
65700061 GTAGTCTGCA
Statistics
Matches: 68, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
23 18 0.26
24 23 0.34
25 8 0.12
26 19 0.28
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (24 bp):
GAGCTGAGAACAGTAAGCTCTTAC
Found at i:65703222 original size:48 final size:48
Alignment explanation
Indices: 65703151--65703243 Score: 177
Period size: 48 Copynumber: 1.9 Consensus size: 48
65703141 AATTCTTCTA
65703151 GAAATAAATCTGAAAACTCACAAACAATAGGTACAGATTCAATCTATG
1 GAAATAAATCTGAAAACTCACAAACAATAGGTACAGATTCAATCTATG
*
65703199 GAAATACATCTGAAAACTCACAAACAATAGGTACAGATTCAATCT
1 GAAATAAATCTGAAAACTCACAAACAATAGGTACAGATTCAATCT
65703244 TTGATTCAGA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.47, C:0.18, G:0.12, T:0.23
Consensus pattern (48 bp):
GAAATAAATCTGAAAACTCACAAACAATAGGTACAGATTCAATCTATG
Found at i:65711550 original size:28 final size:29
Alignment explanation
Indices: 65711519--65711664 Score: 120
Period size: 29 Copynumber: 5.1 Consensus size: 29
65711509 GTGAGCATGA
* *
65711519 ATAT-AATGTGATTTGGACTGGATGGGCC
1 ATATAAATGAGATTTGGCCTGGATGGGCC
* *
65711547 ATATAAATGAGATTGGGCCT-AATGGGCC
1 ATATAAATGAGATTTGGCCTGGATGGGCC
* * * * *
65711575 ATATGAATGTA-AATTGGGCTTGATTGGCC
1 ATATAAATG-AGATTTGGCCTGGATGGGCC
* * * *
65711604 ATATGAATGCGAATTGGGCTGGATGGGCC
1 ATATAAATGAGATTTGGCCTGGATGGGCC
* *
65711633 ATATAAATGAGATTGGGCCTAG-TGGGCC
1 ATATAAATGAGATTTGGCCTGGATGGGCC
65711661 ATAT
1 ATAT
65711665 GCATGTATGT
Statistics
Matches: 95, Mismatches: 19, Indels: 8
0.78 0.16 0.07
Matches are distributed among these distances:
28 35 0.37
29 60 0.63
ACGTcount: A:0.28, C:0.12, G:0.31, T:0.29
Consensus pattern (29 bp):
ATATAAATGAGATTTGGCCTGGATGGGCC
Found at i:65711603 original size:29 final size:28
Alignment explanation
Indices: 65711539--65711664 Score: 128
Period size: 29 Copynumber: 4.4 Consensus size: 28
65711529 ATTTGGACTG
* *
65711539 GATGGGCCATATAAATGAGATTGGGCCT
1 GATGGGCCATATAAATGAAATTGGGCTT
* *
65711567 AATGGGCCATATGAATGTAAATTGGGCTT
1 GATGGGCCATATAAATG-AAATTGGGCTT
* * * *
65711596 GATTGGCCATATGAATGCGAATTGGGCTG
1 GATGGGCCATATAAATG-AAATTGGGCTT
* *
65711625 GATGGGCCATATAAATGAGATTGGGCCT
1 GATGGGCCATATAAATGAAATTGGGCTT
65711653 -AGTGGGCCATAT
1 GA-TGGGCCATAT
65711665 GCATGTATGT
Statistics
Matches: 81, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
27 1 0.01
28 32 0.40
29 48 0.59
ACGTcount: A:0.28, C:0.13, G:0.32, T:0.27
Consensus pattern (28 bp):
GATGGGCCATATAAATGAAATTGGGCTT
Found at i:65711631 original size:58 final size:56
Alignment explanation
Indices: 65711543--65711650 Score: 137
Period size: 57 Copynumber: 1.9 Consensus size: 56
65711533 GGACTGGATG
*
65711543 GGCCATATAAATGAGATTGGGCCTAATGGGCCATATGAATGTAAATTGGGCTTGATT
1 GGCCATATAAATGAGATTGGGCCTAATGGGCCATATAAATG-AAATTGGGCTTGATT
* * * *
65711600 GGCCATATGAATGCGAATTGGG-CTGGATGGGCCATATAAATGAGATTGGGC
1 GGCCATATAAATGAG-ATTGGGCCT-AATGGGCCATATAAATGAAATTGGGC
65711651 CTAGTGGGCC
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
57 23 0.52
58 21 0.48
ACGTcount: A:0.29, C:0.13, G:0.31, T:0.27
Consensus pattern (56 bp):
GGCCATATAAATGAGATTGGGCCTAATGGGCCATATAAATGAAATTGGGCTTGATT
Found at i:65718455 original size:29 final size:29
Alignment explanation
Indices: 65718374--65718525 Score: 184
Period size: 29 Copynumber: 5.3 Consensus size: 29
65718364 GTGAGCATGA
* *
65718374 ATATG-ATGTGATTTGGGCCGGATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
* * *
65718402 ATATAAATGAG-ATTGGGCCTAATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
65718430 ATATGAATGTGAATTGGGCCTGATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
* *
65718459 ATATGAATGCGAATTGGGCCGGATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
* * *
65718488 ATATAAATGTG-ATTGGACCTTATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
*
65718516 ATATGCATGT
1 ATATGAATGT
65718526 ATGTAGGGGT
Statistics
Matches: 105, Mismatches: 17, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
28 49 0.47
29 56 0.53
ACGTcount: A:0.26, C:0.14, G:0.32, T:0.28
Consensus pattern (29 bp):
ATATGAATGTGAATTGGGCCTGATGGGCC
Found at i:65718461 original size:57 final size:58
Alignment explanation
Indices: 65718374--65718519 Score: 190
Period size: 57 Copynumber: 2.6 Consensus size: 58
65718364 GTGAGCATGA
* * *
65718374 ATATG-ATGTGATTTGGGCCGGATGGGCCATATAAATGAG-ATTGGGCCTAATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCCATATAAATGAGAATTGGGCCGAATGGGCC
* * *
65718430 ATATGAATGTGAATTGGGCCTGATGGGCCATATGAATGCGAATTGGGCCGGATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCCATATAAATGAGAATTGGGCCGAATGGGCC
* * *
65718488 ATATAAATGTG-ATTGGACCTTATGGGCCATAT
1 ATATGAATGTGAATTGGGCCTGATGGGCCATAT
65718520 GCATGTATGT
Statistics
Matches: 79, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
56 5 0.06
57 49 0.62
58 25 0.32
ACGTcount: A:0.26, C:0.14, G:0.32, T:0.27
Consensus pattern (58 bp):
ATATGAATGTGAATTGGGCCTGATGGGCCATATAAATGAGAATTGGGCCGAATGGGCC
Found at i:65721197 original size:56 final size:55
Alignment explanation
Indices: 65721135--65721317 Score: 235
Period size: 56 Copynumber: 3.3 Consensus size: 55
65721125 GAGATTGGCG
* *
65721135 CTAAGTGTGCGGGTTTAAATTGTGCAGCACTAAGTGTGCGA-ATTGACTATGTAGCA
1 CTAAGTGTGCGAGTTT-AATTGTG-AGCACTAAGTGTGCGAGTTTGACTATGTAGCA
*
65721191 CTAAGTGTGCGAGTTTGACTATGT-AGCACTAAGTGTGCGAGTTTGACTATGTAGCA
1 CTAAGTGTGCGAGTTT-AAT-TGTGAGCACTAAGTGTGCGAGTTTGACTATGTAGCA
* * * * *
65721247 CTAAGTGTGCGAGCTTGATTATGTAGCACTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAATTGTG-AGCACTAAGTGTGCGAGTTTGACTATGTAGCA
65721303 CTAAGTGTGCGAGTT
1 CTAAGTGTGCGAGTT
65721318 GATTATATAG
Statistics
Matches: 112, Mismatches: 11, Indels: 8
0.85 0.08 0.06
Matches are distributed among these distances:
54 2 0.02
55 17 0.15
56 90 0.80
57 3 0.03
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.32
Consensus pattern (55 bp):
CTAAGTGTGCGAGTTTAATTGTGAGCACTAAGTGTGCGAGTTTGACTATGTAGCA
Found at i:65721217 original size:28 final size:28
Alignment explanation
Indices: 65721160--65721340 Score: 276
Period size: 28 Copynumber: 6.5 Consensus size: 28
65721150 TAAATTGTGC
*
65721160 AGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
65721187 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
65721215 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
65721243 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
65721271 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
65721299 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
65721326 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
65721341 GACTTATTAT
Statistics
Matches: 147, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
27 40 0.27
28 107 0.73
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:65725534 original size:50 final size:50
Alignment explanation
Indices: 65725474--65725620 Score: 179
Period size: 50 Copynumber: 2.9 Consensus size: 50
65725464 ATCATTCATT
* * *
65725474 TGGCCTAATATACAAGATCAAATATAATATCACATATATGCATACCTATG
1 TGGCCAAATATACAAGATCAAATATAATATCACATATGTGCATACCTATA
* * *
65725524 TGGCCAAATATGCAAGATCAAATATAATATCACATATGTGCTTACTTATA
1 TGGCCAAATATACAAGATCAAATATAATATCACATATGTGCATACCTATA
*** * *
65725574 TGGTTGAATATACAA-ATTCAAATATAATGTCACATTTGTGCATACCT
1 TGGCCAAATATACAAGA-TCAAATATAATATCACATATGTGCATACCT
65725621 TTGATCCAAT
Statistics
Matches: 82, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
49 1 0.01
50 81 0.99
ACGTcount: A:0.39, C:0.16, G:0.12, T:0.33
Consensus pattern (50 bp):
TGGCCAAATATACAAGATCAAATATAATATCACATATGTGCATACCTATA
Found at i:65726451 original size:22 final size:22
Alignment explanation
Indices: 65726426--65726468 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
65726416 TATATATTTC
*
65726426 ATTTATTTTGCATTTTAGTCCA
1 ATTTATTTTGCAATTTAGTCCA
*
65726448 ATTTTTTTTGCAATTTAGTCC
1 ATTTATTTTGCAATTTAGTCC
65726469 TAATAACTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.21, C:0.14, G:0.09, T:0.56
Consensus pattern (22 bp):
ATTTATTTTGCAATTTAGTCCA
Found at i:65732092 original size:50 final size:50
Alignment explanation
Indices: 65732038--65732253 Score: 256
Period size: 50 Copynumber: 4.3 Consensus size: 50
65732028 ATCATTCATT
* *
65732038 TGGCCGAATATACAAGAT-AAATTATAATACCACATATATGCATACCTATA
1 TGGCCGAATATACAAGATCAAA-TATAATATCACATATGTGCATACCTATA
* * * *
65732088 TGGCCAAATATGCAAGATCAAATATAATATCACATATGTGCTTACTTATA
1 TGGCCGAATATACAAGATCAAATATAATATCACATATGTGCATACCTATA
* * *
65732138 TGGCTGAATATACAA-ATCCAAATATAATATCACATTTGTGCATACCTTTA
1 TGGCCGAATATACAAGAT-CAAATATAATATCACATATGTGCATACCTATA
** * * * *
65732188 TATCCGAATATACAAGATCCAATATAACATCACATATGTACATACCTATG
1 TGGCCGAATATACAAGATCAAATATAATATCACATATGTGCATACCTATA
*
65732238 TGGCCGAATATTCAAG
1 TGGCCGAATATACAAG
65732254 GTCATTTAGC
Statistics
Matches: 138, Mismatches: 25, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
49 2 0.01
50 131 0.95
51 5 0.04
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.30
Consensus pattern (50 bp):
TGGCCGAATATACAAGATCAAATATAATATCACATATGTGCATACCTATA
Found at i:65737380 original size:43 final size:43
Alignment explanation
Indices: 65737225--65737381 Score: 176
Period size: 43 Copynumber: 3.7 Consensus size: 43
65737215 CAATGCTATA
* * * *
65737225 TCCCAGATAT-GTCTTACATGTTATCA-TATATCGATGCCACTG
1 TCCCAGACATGGTCTTACATGTAATCACAATAT-GATGCCAATG
* * * *
65737267 TCCCAGATA-GAGTCTTACATGAAATCATAATACGATGCCAATG
1 TCCCAGACATG-GTCTTACATGTAATCACAATATGATGCCAATG
* * *
65737310 TCCTAGACATGGTCTTACACGTAATCACAATATAATGCCAATG
1 TCCCAGACATGGTCTTACATGTAATCACAATATGATGCCAATG
65737353 TCCCAGACATGGTCTTACATGTAATCACA
1 TCCCAGACATGGTCTTACATGTAATCACA
65737382 TCTTGATAAC
Statistics
Matches: 97, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
42 9 0.09
43 84 0.87
44 4 0.04
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACATGTAATCACAATATGATGCCAATG
Found at i:65744194 original size:21 final size:21
Alignment explanation
Indices: 65744168--65744208 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
65744158 TATTTTTGAA
65744168 TTATTAATATCATTAATATTG
1 TTATTAATATCATTAATATTG
* *
65744189 TTATTATTATCATTATTATT
1 TTATTAATATCATTAATATT
65744209 ATGTGTTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.34, C:0.05, G:0.02, T:0.59
Consensus pattern (21 bp):
TTATTAATATCATTAATATTG
Found at i:65753878 original size:27 final size:27
Alignment explanation
Indices: 65753848--65754025 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
65753838 ATATCGAGTC
* * * *
65753848 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
65753875 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
65753902 CGCACACTTAGTGCCACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
65753930 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
65753957 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
65753984 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
65754011 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
65754026 GTACAATTTA
Statistics
Matches: 132, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
27 107 0.81
28 25 0.19
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:65753987 original size:82 final size:81
Alignment explanation
Indices: 65753869--65754024 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
65753859 TGCTATATAA
*
65753869 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCCACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
65753934 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
65753951 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
65754015 CACTTAGTGC
65 CACTTAGTGC
65754025 TGTACAATTT
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 16 0.24
82 52 0.76
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:65759575 original size:190 final size:191
Alignment explanation
Indices: 65759247--65759627 Score: 746
Period size: 190 Copynumber: 2.0 Consensus size: 191
65759237 CCAGTGGTGA
65759247 CGTCGGGGGAGGATGCCTCCTCTCGTGCGCGAATGGCATATGCTCTAGCAGGAGCACGGTTCTCG
1 CGTCGGGGGAGGATGCCTCCTCTCGTGCGCGAATGGCATATGCTCTAGCAGGAGCACGGTTCTCG
*
65759312 GCGCGATCGGCCGTATCAGAAGCCCCCCTCTGACTACCACCCCTGCCTCCAAAAATTCTCGGTGG
66 GCGCGATCGGCCGTATCAGAAGCCCCCCTCTAACTACCACCCCTGCCTCCAAAAATTCTCGGTGG
65759377 TCTACCTCTAGATGTCACTCCACTAGGTCTTGCACCTTGAATCTTATTCTTCTCATCCAGC
131 TCTACCTCTAGATGTCACTCCACTAGGTCTTGCACCTTGAATCTTATTCTTCTCATCCAGC
65759438 CGTC-GGGGAGGATGCCTCCTCTCGTGCGCGAATGGCATATGCTCTAGCAGGAGCACGGTTCTCG
1 CGTCGGGGGAGGATGCCTCCTCTCGTGCGCGAATGGCATATGCTCTAGCAGGAGCACGGTTCTCG
65759502 GCGCGATCGGCCGTATCAGAAGCCCCCCTCTAACTACCACCCCTGCCTCCAAAAATTCTCGGTGG
66 GCGCGATCGGCCGTATCAGAAGCCCCCCTCTAACTACCACCCCTGCCTCCAAAAATTCTCGGTGG
65759567 TCTACCTCTAGATGTCACTCCACTAGGTCTTGCACCTTGAATCTTATTCTTCTCATCCAGC
131 TCTACCTCTAGATGTCACTCCACTAGGTCTTGCACCTTGAATCTTATTCTTCTCATCCAGC
65759628 TCCGTGCAAT
Statistics
Matches: 189, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
190 185 0.98
191 4 0.02
ACGTcount: A:0.19, C:0.34, G:0.23, T:0.25
Consensus pattern (191 bp):
CGTCGGGGGAGGATGCCTCCTCTCGTGCGCGAATGGCATATGCTCTAGCAGGAGCACGGTTCTCG
GCGCGATCGGCCGTATCAGAAGCCCCCCTCTAACTACCACCCCTGCCTCCAAAAATTCTCGGTGG
TCTACCTCTAGATGTCACTCCACTAGGTCTTGCACCTTGAATCTTATTCTTCTCATCCAGC
Found at i:65762240 original size:27 final size:27
Alignment explanation
Indices: 65762210--65762387 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
65762200 ATATCGAGTC
* * * *
65762210 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
65762237 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
65762264 CGCACACTTAGTGCCACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
65762292 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
65762319 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
65762346 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
65762373 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
65762388 GTACAATTTA
Statistics
Matches: 132, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
27 107 0.81
28 25 0.19
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:65762349 original size:82 final size:81
Alignment explanation
Indices: 65762231--65762386 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
65762221 TGCTATATAA
*
65762231 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCCACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
65762296 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
65762313 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
65762377 CACTTAGTGC
65 CACTTAGTGC
65762387 TGTACAATTT
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 16 0.24
82 52 0.76
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:65769177 original size:69 final size:69
Alignment explanation
Indices: 65769003--65769177 Score: 208
Period size: 70 Copynumber: 2.5 Consensus size: 69
65768993 CTTTCCAAGG
* * ** *
65769003 AAAATCAATTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTTG
65769068 TTTT
66 TTTT
* ** * *
65769072 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
1 -AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTT-
65769137 TGTTTT
64 TGTTTT
** *
65769143 -AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
65769178 TTTAATTTTT
Statistics
Matches: 90, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
69 31 0.34
70 54 0.60
71 5 0.06
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (69 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTTG
TTTT
Found at i:65769389 original size:72 final size:72
Alignment explanation
Indices: 65769181--65769532 Score: 411
Period size: 72 Copynumber: 4.7 Consensus size: 72
65769171 TAAGCCTTTT
* *
65769181 AATTTTTGTTTTTC-AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTCTG-TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
65769245 GTAATTTC
65 GTAATTTC
* ** *
65769253 AATTTCTGTTGTTAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGTTG
1 AATTTCTGTT-TT--CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
65769318 AGGTAATTTC
63 AGGTAATTTC
* * ** * *
65769328 AATTTCTGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
*
65769393 TATTTTC
66 TAATTTC
* *
65769400 AATTTCTGTTTTCAAAAAAAAGTCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACAT
1 AATTTCTGTTTTC---AAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACAC
*
65769464 GCTGAGGTATTTTC
59 GCTGAGGTAATTTC
* *
65769478 AATTTCTGTTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 AATTTCTG-TTTT-CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
65769533 ATTACACACT
Statistics
Matches: 246, Mismatches: 20, Indels: 23
0.85 0.07 0.08
Matches are distributed among these distances:
71 2 0.01
72 77 0.31
74 2 0.01
75 69 0.28
76 62 0.25
77 6 0.02
78 24 0.10
79 4 0.02
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (72 bp):
AATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
TAATTTC
Found at i:65769552 original size:76 final size:74
Alignment explanation
Indices: 65769195--65769532 Score: 448
Period size: 75 Copynumber: 4.5 Consensus size: 74
65769185 TTTGTTTTTC
* *
65769195 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
65769260 GTTGTTAAAA
66 GTT-TTAAAA
** * *
65769270 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGTTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
*
65769335 GTTTT--CA
66 GTTTTAAAA
* * ** * *
65769342 AAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
65769407 GTTTTCAAAA
66 GTTTT-AAAA
* *
65769417 AAAAGTCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAAT
1 AAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTCAAT
*
65769481 TTCTGTTTTTAAA
62 TTCTGTTTTAAAA
*
65769494 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
65769533 ATTACACACT
Statistics
Matches: 236, Mismatches: 19, Indels: 14
0.88 0.07 0.05
Matches are distributed among these distances:
72 67 0.28
74 2 0.01
75 69 0.29
76 62 0.26
77 8 0.03
78 28 0.12
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (74 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
GTTTTAAAA
Found at i:65769950 original size:88 final size:87
Alignment explanation
Indices: 65769755--65770000 Score: 289
Period size: 88 Copynumber: 2.8 Consensus size: 87
65769745 TATTCTAATT
* *
65769755 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACACACGCCGAGGTATTTTCAATTAAGC-
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACA--CCGAGGTATTTTCAATT--TCT
* * *
65769819 CTTTTGATTTCTGTTTTTCAAAAAAA
62 GTTTTCATTTATGTTTTTCAAAAAAA
* *
65769845 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACCGAGGTATTTTCCATTTCTGTTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACCGAGGTATTTTCAATTTCTGTTT
* *
65769910 TCATTATTATGTTTTT-GAAAGAA
66 TCA-T-TTATGTTTTTCAAAAAAA
** * ** *
65769933 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAATTTCAATTTCTGTTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACCGAGGTATTTTCAATTTCTGTTT
65769998 TCA
66 TCA
65770001 AAATTCAACT
Statistics
Matches: 136, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
86 1 0.01
87 5 0.04
88 82 0.60
89 9 0.07
90 39 0.29
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (87 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACCGAGGTATTTTCAATTTCTGTTT
TCATTTATGTTTTTCAAAAAAA
Found at i:65770399 original size:72 final size:72
Alignment explanation
Indices: 65769933--65770398 Score: 785
Period size: 72 Copynumber: 6.5 Consensus size: 72
65769923 TTTGAAAGAA
*
65769933 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAATTTCAATTTCTGTTT
1 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTT
65769998 TCAAAAT
66 TCAAAAT
*
65770005 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGCTT
1 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTG-TT
65770070 TTCAAAAT
65 TTCAAAAT
* *
65770078 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTT
1 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTT
*
65770143 TCAAAAA
66 TCAAAAT
*
65770150 TCAACTCATATTGCGAGAAATGAGTTGAGCCTC-AGACACATTGAGGTAATTTCAATTTCTGTTT
1 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTT
65770214 TCAAAAT
66 TCAAAAT
*
65770221 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTT
1 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTT
65770286 TCAAAAT
66 TCAAAAT
* * *
65770293 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTCAATTTCTG-T
1 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTA-ATTTCAATTTCTGTT
*
65770357 TTCAAAAA
65 TTCAAAAT
65770365 TCAACTCATATTGCGA-AAAGTGAGTTGAGCCTCA
1 TCAACTCATATTGCGAGAAA-TGAGTTGAGCCTCA
65770399 GTTCACATGT
Statistics
Matches: 375, Mismatches: 15, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
71 70 0.19
72 223 0.59
73 82 0.22
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33
Consensus pattern (72 bp):
TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTT
TCAAAAT
Found at i:65772206 original size:27 final size:28
Alignment explanation
Indices: 65772142--65772207 Score: 68
Period size: 26 Copynumber: 2.5 Consensus size: 28
65772132 TTCGTCTCTT
*
65772142 TTGTTATT-TTATTAAATATCATCATTA
1 TTGTTATTATTATTAAATATCATCAATA
* *
65772169 TT-TT-TGAATTATT-AATATCATTAATA
1 TTGTTAT-TATTATTAAATATCATCAATA
65772195 TTGTTATTATTAT
1 TTGTTATTATTAT
65772208 CATTATTATT
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
25 1 0.03
26 15 0.48
27 14 0.45
28 1 0.03
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.58
Consensus pattern (28 bp):
TTGTTATTATTATTAAATATCATCAATA
Found at i:65772780 original size:13 final size:13
Alignment explanation
Indices: 65772758--65772791 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
65772748 TATATGTGTG
65772758 TGTA-TGTATTTA
1 TGTAGTGTATTTA
65772770 TGTAGTGTATTTA
1 TGTAGTGTATTTA
65772783 TGTAGTGTA
1 TGTAGTGTA
65772792 CAAAATAGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.19
13 17 0.81
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.53
Consensus pattern (13 bp):
TGTAGTGTATTTA
Found at i:65775498 original size:28 final size:29
Alignment explanation
Indices: 65775454--65775508 Score: 94
Period size: 28 Copynumber: 1.9 Consensus size: 29
65775444 CATGACTATG
65775454 AATGTGATTTGGGCCTAATGGGCCATACA
1 AATGTGATTTGGGCCTAATGGGCCATACA
*
65775483 AATGTGA-TTGGGCCTAGTGGGCCATA
1 AATGTGATTTGGGCCTAATGGGCCATA
65775509 TGCATGTATG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 18 0.72
29 7 0.28
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.27
Consensus pattern (29 bp):
AATGTGATTTGGGCCTAATGGGCCATACA
Found at i:65775515 original size:28 final size:29
Alignment explanation
Indices: 65775450--65775515 Score: 89
Period size: 28 Copynumber: 2.3 Consensus size: 29
65775440 AAAGCATGAC
65775450 TATGAATGTGATTTGGGCCTAATGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
** *
65775479 TACAAATGTGA-TTGGGCCTAGTGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
*
65775507 TATGCATGT
1 TATGAATGT
65775516 ATGTTAACTT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
28 22 0.71
29 9 0.29
ACGTcount: A:0.24, C:0.15, G:0.30, T:0.30
Consensus pattern (29 bp):
TATGAATGTGATTTGGGCCTAATGGGCCA
Found at i:65783225 original size:28 final size:29
Alignment explanation
Indices: 65783160--65783225 Score: 98
Period size: 28 Copynumber: 2.3 Consensus size: 29
65783150 AAAGCATGAC
65783160 TATGAATGTGATTTGGGCCTAATGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
* *
65783189 TACGAATGTGA-TTGGGCCTAGTGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
*
65783217 TATGCATGT
1 TATGAATGT
65783226 TTGTTGACTT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
28 23 0.70
29 10 0.30
ACGTcount: A:0.23, C:0.15, G:0.32, T:0.30
Consensus pattern (29 bp):
TATGAATGTGATTTGGGCCTAATGGGCCA
Found at i:65791010 original size:30 final size:30
Alignment explanation
Indices: 65790952--65791010 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
65790942 AACATGACCG
*
65790952 TGTGTCACACACGGCTAAGACACTCGCCCA
1 TGTGTCACACACGGCTAAGACACACGCCCA
65790982 TGTGTCACACACGGCTAAGACACACGCCC
1 TGTGTCACACACGGCTAAGACACACGCCC
65791011 GTGTCCCTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.27, C:0.37, G:0.20, T:0.15
Consensus pattern (30 bp):
TGTGTCACACACGGCTAAGACACACGCCCA
Found at i:65791947 original size:24 final size:25
Alignment explanation
Indices: 65791892--65791956 Score: 87
Period size: 24 Copynumber: 2.6 Consensus size: 25
65791882 GAGTCATGGT
*
65791892 CGGTAAGCTCTTACTGAGCTGATAAA
1 CGGTAAGCTC-TATTGAGCTGATAAA
*
65791918 CAGTAAGCTCTATTGAGCTGA-AAA
1 CGGTAAGCTCTATTGAGCTGATAAA
*
65791942 CGGTAAGCTTTATTG
1 CGGTAAGCTCTATTG
65791957 TAGTGAACAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
24 16 0.46
25 10 0.29
26 9 0.26
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (25 bp):
CGGTAAGCTCTATTGAGCTGATAAA
Found at i:65793743 original size:27 final size:27
Alignment explanation
Indices: 65793695--65793746 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
65793685 GCGAGGCTGC
*
65793695 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGATA
* * *
65793722 CAGATATTGTGGCTAGGCCACCAGA
1 CAGATATTGTGACGAAGCCACCAGA
65793747 ACAAATACAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.21
Consensus pattern (27 bp):
CAGATATTGTGACGAAGCCACCAGATA
Found at i:65800772 original size:93 final size:93
Alignment explanation
Indices: 65800643--65800814 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
65800633 CGCCCATAAG
* * * * *
65800643 CGAACTCGGATTCAACTCAACGAGCTCGGGCGTTCGCATCCGTAAGTGAACTCAGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
65800708 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
65800736 CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
65800801 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
65800815 TCAACCATCC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:65800811 original size:46 final size:46
Alignment explanation
Indices: 65800636--65800811 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
65800626 TGTAACCCGC
* * * * *
65800636 CCATAAGCGAACTCGGATTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
65800682 CCGTAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
65800732 -C-TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
65800775 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCAGACTCAACTCAACGAGTTCGGA
65800812 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 59 0.55
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:65800830 original size:46 final size:46
Alignment explanation
Indices: 65800685--65800823 Score: 135
Period size: 47 Copynumber: 3.0 Consensus size: 46
65800675 TTCGCATCCG
65800685 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATC
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATC
* * * * *
65800733 TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCA--
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGG--ATGCTCAACCATC
*
65800778 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCTCAACCATC
65800824 CTAGTGACAT
Statistics
Matches: 74, Mismatches: 10, Indels: 16
0.74 0.10 0.16
Matches are distributed among these distances:
44 8 0.11
45 2 0.03
46 27 0.36
47 30 0.41
48 2 0.03
49 4 0.05
50 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCTCAACCATC
Found at i:65805217 original size:27 final size:28
Alignment explanation
Indices: 65805177--65805230 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 28
65805167 TACCTAGACC
*
65805177 CCCTATATAGGATAAAATGACTATTTTA
1 CCCTATATACGATAAAATGACTATTTTA
*
65805205 CCCT-TATACGATAAGATGACTATTTT
1 CCCTATATACGATAAAATGACTATTTT
65805231 TCCCCTATGT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 20 0.83
28 4 0.17
ACGTcount: A:0.35, C:0.17, G:0.11, T:0.37
Consensus pattern (28 bp):
CCCTATATACGATAAAATGACTATTTTA
Found at i:65806536 original size:31 final size:31
Alignment explanation
Indices: 65806495--65806558 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
65806485 CCTTTTCATA
*
65806495 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
** *
65806526 TTTCAAATTTCATATTACTGGGTCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
65806557 TT
1 TT
65806559 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:65806872 original size:22 final size:23
Alignment explanation
Indices: 65806766--65806890 Score: 180
Period size: 23 Copynumber: 5.3 Consensus size: 23
65806756 TTGGAGGCCT
*
65806766 AGCCTCTTTAAGTAACTGGGGCAAA
1 AGCC-CTTTAA-TAACTGGGGCATA
*
65806791 AGCCCTTTTTATAACTGGGGCATA
1 AGCCC-TTTAATAACTGGGGCATA
65806815 AGCCCTTTAATAACTGGGGCATA
1 AGCCCTTTAATAACTGGGGCATA
* *
65806838 AGCCCTTTGATAACTGTGGCATA
1 AGCCCTTTAATAACTGGGGCATA
65806861 AG-CCTTTAATAACTGGGGCATA
1 AGCCCTTTAATAACTGGGGCATA
65806883 AGCCCTTT
1 AGCCCTTT
65806891 TTCACTTCCT
Statistics
Matches: 91, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
22 20 0.22
23 45 0.49
24 18 0.20
25 8 0.09
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (23 bp):
AGCCCTTTAATAACTGGGGCATA
Found at i:65806882 original size:45 final size:46
Alignment explanation
Indices: 65806766--65806890 Score: 189
Period size: 45 Copynumber: 2.7 Consensus size: 46
65806756 TTGGAGGCCT
* *
65806766 AGCCTCTTTAAGTAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATA
1 AGCC-CTTTAA-TAACTGGGGCATAAGCCC-TTTGATAACTGGGGCATA
*
65806815 AGCCCTTTAATAACTGGGGCATAAGCCCTTTGATAACTGTGGCATA
1 AGCCCTTTAATAACTGGGGCATAAGCCCTTTGATAACTGGGGCATA
65806861 AG-CCTTTAATAACTGGGGCATAAGCCCTTT
1 AGCCCTTTAATAACTGGGGCATAAGCCCTTT
65806891 TTCACTTCCT
Statistics
Matches: 73, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
45 28 0.38
46 18 0.25
47 17 0.23
48 6 0.08
49 4 0.05
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (46 bp):
AGCCCTTTAATAACTGGGGCATAAGCCCTTTGATAACTGGGGCATA
Found at i:65806967 original size:20 final size:20
Alignment explanation
Indices: 65806942--65806980 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
65806932 TATGAGTACA
65806942 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATG
65806962 TCATGTGCATATCATACAT
1 TCATGTGCATATCATACAT
65806981 ACCATGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATG
Found at i:65806986 original size:20 final size:20
Alignment explanation
Indices: 65806943--65806987 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
65806933 ATGAGTACAT
**
65806943 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATAC
65806963 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAC
65806983 CATGT
1 CATGT
65806988 TTATCAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.33
Consensus pattern (20 bp):
CATGTGCATATCATACATAC
Found at i:65807056 original size:25 final size:25
Alignment explanation
Indices: 65807024--65807071 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
65807014 ATACATAAAC
* * *
65807024 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
65807049 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
65807072 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:65821088 original size:47 final size:47
Alignment explanation
Indices: 65820876--65821181 Score: 170
Period size: 47 Copynumber: 6.5 Consensus size: 47
65820866 TTGCCGCTGT
* * *
65820876 CATGTCCCAGACATGGTCTTACGCTGGCTATC-TCCATCGAGG-TCGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTAACAT-CATCGAGGCT-AATG
* ** * * * *
65820924 CCATGTCCCAGACATGGTCTTACACTAGCTCTCGTGTATAC-ATGCTAATA
1 -CATGTCCCAGACAT-GTCTTACACTGGCTAACAT-CAT-CGAGGCTAATG
* * * *
65820974 CATGTCCCAGACATGTCTTACACTAGC--ACGA--AACTTA-GCCAATG
1 CATGTCCCAGACATGTCTTACACTGGCTAAC-ATCATC-GAGGCTAATG
* *
65821018 CATGTCCC-GACACGTCTTACACTGGCTAACATCATCGAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTGGCTAACATCATCGAGGCTAATG
** * * *
65821064 CATGTCCCAGACATGTCTTACACTGGC--AC-TCACCTATACGCCAACG
1 CATGTCCCAGACATGTCTTACACTGGCTAACATCA--TCGAGGCTAATG
* * * * *
65821110 CCATGTCCCAGACATGGTCTTACACGGGCTATCATGAT-GCGGTTAATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTAACATCATCGAGGCTAATG
65821158 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
65821182 AACCTTCTTC
Statistics
Matches: 202, Mismatches: 36, Indels: 41
0.72 0.13 0.15
Matches are distributed among these distances:
43 17 0.08
44 18 0.09
45 6 0.03
46 31 0.15
47 45 0.22
48 29 0.14
49 44 0.22
50 8 0.04
51 4 0.02
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTGGCTAACATCATCGAGGCTAATG
Found at i:65821177 original size:94 final size:92
Alignment explanation
Indices: 65820923--65821182 Score: 292
Period size: 90 Copynumber: 2.8 Consensus size: 92
65820913 CGAGGTCGAT
* * * * * *
65820923 GCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTGTATACATGCTAATACATGTCCCAGACAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTATCATG-ATGC-GGCTAATGCATGTCCCAGACAT
*
65820988 GTCTTACACTAGCACGAAACTTAGCCAAT
64 GTCTTACACTAGCACGAAACTTAGCCAAC
* * * * *
65821017 G-CATGTCCC-GACA-CGTCTTACACTGGCTAACATCATCGAGGCTGATGCATGTCCCAGACATG
1 GCCATGTCCCAGACATGGTCTTACACTGGCTATCATGAT-GCGGCTAATGCATGTCCCAGACATG
* ** *
65821079 TCTTACACTGGCACTCACCTATACGCCAAC
65 TCTTACACTAGCACGAAACT-TA-GCCAAC
* *
65821109 GCCATGTCCCAGACATGGTCTTACACGGGCTATCATGATGCGGTTAATGCATGTCCCAGACATGT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTATCATGATGCGGCTAATGCATGTCCCAGACATGT
65821174 CTTACACTA
66 CTTACACTA
65821183 ACCTTCTTCT
Statistics
Matches: 136, Mismatches: 24, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
90 38 0.28
91 17 0.12
92 10 0.07
93 16 0.12
94 36 0.26
95 19 0.14
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.25
Consensus pattern (92 bp):
GCCATGTCCCAGACATGGTCTTACACTGGCTATCATGATGCGGCTAATGCATGTCCCAGACATGT
CTTACACTAGCACGAAACTTAGCCAAC
Found at i:65821207 original size:94 final size:92
Alignment explanation
Indices: 65820921--65821233 Score: 292
Period size: 94 Copynumber: 3.4 Consensus size: 92
65820911 ATCGAGGTCG
* * * * * *
65820921 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTGTATACATGCTAATACATGTCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATG-ATGC-GGCTAATGCATGTCCCAGAC
** *
65820986 ATGTCTTACACTAGCACGAAACTTAGCCA
64 ATGTCTTACACTAGCACTCAACTAAGCCA
* * * * *
65821015 ATG-CATGTCCC-GACA-CGTCTTACACTGGCTAACATCATCGAGGCTGATGCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATGAT-GCGGCTAATGCATGTCCCAGACA
* *
65821077 TGTCTTACACTGGCACTCACCTATACGCCA
65 TGTCTTACACTAGCACTCAACTA-A-GCCA
* * *
65821107 ACGCCATGTCCCAGACATGGTCTTACACGGGCTATCATGATGCGGTTAATGCATGTCCCAGACAT
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATGATGCGGCTAATGCATGTCCCAGACAT
* ** *
65821172 GTCTTACACTAAC-CTTCTTCTCAATGCCG
66 GTCTTACACTAGCAC-TCAACT-AA-GCCA
* * *
65821201 ATGCCATGTCCCAGAGATGGTCTCATACTGGCT
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCT
65821234 CTCACAAAAC
Statistics
Matches: 176, Mismatches: 35, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
90 38 0.22
91 16 0.09
92 10 0.06
93 17 0.10
94 75 0.43
95 20 0.11
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (92 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATGATGCGGCTAATGCATGTCCCAGACAT
GTCTTACACTAGCACTCAACTAAGCCA
Found at i:65822986 original size:27 final size:27
Alignment explanation
Indices: 65822956--65823262 Score: 321
Period size: 27 Copynumber: 11.4 Consensus size: 27
65822946 CCCCAAAATA
* * *
65822956 GGTAAAATGACCGTAATACCCATGTTG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* *
65822983 GGTAAAATGACAGTAATGCCCCTGTAC
1 GGTAAAATGACCGTAATGCCCCTGTAG
* **
65823010 AGTAAAACAACCGTAATGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* *
65823037 GGTAAAATGATCATAATGCCCC-GATAG
1 GGTAAAATGACCGTAATGCCCCTG-TAG
*
65823064 GGTAAAATGACCGTAATGCCCCTATAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* * *
65823091 GGTAAAATGACCATAATGCCCTTGCAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* * * *
65823118 GATAAAATGACCGTAATGCCCTTATAA
1 GGTAAAATGACCGTAATGCCCCTGTAG
* *
65823145 GGTAAAATGACCATAATACCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* * * *
65823172 GGTAAAATAACAGTAATG-TCCAGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
*
65823198 GGTAAAATGACCGTAATGCCCCTGTAA
1 GGTAAAATGACCGTAATGCCCCTGTAG
* * * * *
65823225 GGTAAAATGATCATAATGCCCTTATAT
1 GGTAAAATGACCGTAATGCCCCTGTAG
65823252 GGTAAAATGAC
1 GGTAAAATGAC
65823263 GATTAGGCCA
Statistics
Matches: 227, Mismatches: 50, Indels: 6
0.80 0.18 0.02
Matches are distributed among these distances:
26 23 0.10
27 204 0.90
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.23
Consensus pattern (27 bp):
GGTAAAATGACCGTAATGCCCCTGTAG
Found at i:65823433 original size:27 final size:27
Alignment explanation
Indices: 65823398--65823482 Score: 79
Period size: 27 Copynumber: 3.2 Consensus size: 27
65823388 ATGGAGGAAG
*
65823398 TACTG-TACTGGTGAGTATGTCAC-AT
1 TACTGATACTGGTGAGTATGCCACAAT
*
65823423 TCACT-ATTACTGGTGGGTATGCCACAAT
1 T-ACTGA-TACTGGTGAGTATGCCACAAT
* *
65823451 TACTGATACTGGTG-GCTTTGCCACACT
1 TACTGATACTGGTGAG-TATGCCACAAT
65823478 TACTG
1 TACTG
65823483 TTCTCACACT
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
25 1 0.02
26 4 0.08
27 41 0.82
28 4 0.08
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.34
Consensus pattern (27 bp):
TACTGATACTGGTGAGTATGCCACAAT
Found at i:65825768 original size:21 final size:21
Alignment explanation
Indices: 65825744--65825787 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
65825734 TTAGATAGCC
65825744 AAATATTAAAGAAAGAAAACA
1 AAATATTAAAGAAAGAAAACA
65825765 AAATATTAAAGAAAGAAAACA
1 AAATATTAAAGAAAGAAAACA
65825786 AA
1 AA
65825788 GAATAAAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.73, C:0.05, G:0.09, T:0.14
Consensus pattern (21 bp):
AAATATTAAAGAAAGAAAACA
Found at i:65826697 original size:56 final size:56
Alignment explanation
Indices: 65826611--65826744 Score: 241
Period size: 56 Copynumber: 2.4 Consensus size: 56
65826601 CATGGCTTCA
**
65826611 ATATATGTGTGCGAGTAAGACCATGTTTAATACGTTGGCATCGATATGTGATTTCG
1 ATATATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTTCG
65826667 ATATATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTTCG
1 ATATATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTTCG
*
65826723 ATATATGTGTACGAGTAAGACC
1 ATATATGTGTGCGAGTAAGACC
65826745 CTGTCTGGGA
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 75 1.00
ACGTcount: A:0.29, C:0.13, G:0.24, T:0.34
Consensus pattern (56 bp):
ATATATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTTCG
Found at i:65835127 original size:6 final size:6
Alignment explanation
Indices: 65835111--65835197 Score: 52
Period size: 6 Copynumber: 13.5 Consensus size: 6
65835101 ATTTTCTCAA
* *
65835111 TTTTCT TTTCTTT TTCTTCT TTTTCT TTGTTGT TTTTCT TTTCACTCT
1 TTTTCT TTT-TCT TT-TTCT TTTTCT TT-TTCT TTTTCT TTT---TCT
* *
65835159 CTTTT-G TTTTCT TTTTCT TTTTTT TTCTTCT TTTT-T TTT
1 -TTTTCT TTTTCT TTTTCT TTTTCT TT-TTCT TTTTCT TTT
65835198 ACAATATTCC
Statistics
Matches: 64, Mismatches: 8, Indels: 19
0.70 0.09 0.21
Matches are distributed among these distances:
5 8 0.12
6 30 0.47
7 19 0.30
8 1 0.02
9 3 0.05
10 3 0.05
ACGTcount: A:0.01, C:0.16, G:0.03, T:0.79
Consensus pattern (6 bp):
TTTTCT
Found at i:65835149 original size:33 final size:33
Alignment explanation
Indices: 65835111--65835187 Score: 86
Period size: 33 Copynumber: 2.4 Consensus size: 33
65835101 ATTTTCTCAA
* *
65835111 TTTTCTTTTCTTTTTCTTCT-TTTTCTTTGTTGT
1 TTTTCTTTTCTTTCTCTTCTGTTTTCTTT-TTCT
** *
65835144 TTTTCTTTTCACTCTCTTTTGTTTTCTTTTTCT
1 TTTTCTTTTCTTTCTCTTCTGTTTTCTTTTTCT
65835177 TTTT-TTTTCTT
1 TTTTCTTTTCTT
65835188 CTTTTTTTTT
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
32 5 0.14
33 23 0.64
34 8 0.22
ACGTcount: A:0.01, C:0.17, G:0.04, T:0.78
Consensus pattern (33 bp):
TTTTCTTTTCTTTCTCTTCTGTTTTCTTTTTCT
Found at i:65835195 original size:16 final size:16
Alignment explanation
Indices: 65835111--65835197 Score: 70
Period size: 16 Copynumber: 5.4 Consensus size: 16
65835101 ATTTTCTCAA
*
65835111 TTTTCTTTTCTTTTTC
1 TTTTTTTTTCTTTTTC
* *
65835127 -TTCTTTTTCTTTGTTG
1 TTTTTTTTTCTTT-TTC
** *
65835143 TTTTTCTTTTCACTCTC
1 TTTTT-TTTTCTTTTTC
*
65835160 TTTTGTTTTCTTTTTC
1 TTTTTTTTTCTTTTTC
65835176 TTTTTTTTTCTTCTTT-
1 TTTTTTTTTCTT-TTTC
65835192 TTTTTT
1 TTTTTT
65835198 ACAATATTCC
Statistics
Matches: 54, Mismatches: 13, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
15 10 0.19
16 27 0.50
17 11 0.20
18 6 0.11
ACGTcount: A:0.01, C:0.16, G:0.03, T:0.79
Consensus pattern (16 bp):
TTTTTTTTTCTTTTTC
Found at i:65837302 original size:11 final size:11
Alignment explanation
Indices: 65837286--65837314 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
65837276 CACTTCAAAT
65837286 TTTTTTTCGAA
1 TTTTTTTCGAA
65837297 TTTTTTTCGAA
1 TTTTTTTCGAA
65837308 TTTTTTT
1 TTTTTTT
65837315 AAACTTGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.14, C:0.07, G:0.07, T:0.72
Consensus pattern (11 bp):
TTTTTTTCGAA
Found at i:65842008 original size:27 final size:27
Alignment explanation
Indices: 65841977--65842154 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
65841967 TGAATTGTAC
65841977 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
65842004 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
65842030 ATGCACTAAGTGTGCGAATCGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
65842058 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
65842086 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
65842113 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
65842140 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
65842155 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 105 0.83
28 22 0.17
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:65842091 original size:82 final size:81
Alignment explanation
Indices: 65841978--65842128 Score: 232
Period size: 82 Copynumber: 1.9 Consensus size: 81
65841968 GAATTGTACA
* *
65841978 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
65842042 TGCGAATCGACCATGCG
65 TGCGAATCGACCATGCG
** *
65842059 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
65842124 TGCGA
65 TGCGA
65842129 GTTGATTATA
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.24
82 47 0.75
83 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATCGACCATGCG
Found at i:65842145 original size:82 final size:81
Alignment explanation
Indices: 65841952--65842154 Score: 228
Period size: 82 Copynumber: 2.5 Consensus size: 81
65841942 GAGATTGGCG
* * *
65841952 CTAAGTGTGCGGGATTGAATTGTACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTG
1 CTAAGTGTGCGAG-TTG-ATTATACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTG
*
65842017 CGAAATGAATATGATGCA
64 CGAAATGAATACGATGCA
* * ** * *
65842035 CTAAGTGTGCGAATCGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGC
1 CTAAGTGTGCGAGTTGATTATACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGC
** *
65842100 GATTTGATTACG-TAGCA
65 GAAATGAATACGAT-GCA
* *
65842117 CTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 CTAAGTGTGCGAGTTGATTATACAGCACTAAGTGTGCG
65842155 GACTCAATAT
Statistics
Matches: 97, Mismatches: 21, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
81 19 0.20
82 67 0.69
83 11 0.11
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (81 bp):
CTAAGTGTGCGAGTTGATTATACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCG
AAATGAATACGATGCA
Found at i:65845426 original size:24 final size:24
Alignment explanation
Indices: 65845394--65845447 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
65845384 GTTATAATTG
65845394 GGTATTTCACAGCGATTTCCTCTA
1 GGTATTTCACAGCGATTTCCTCTA
* *
65845418 GGTATTTCATAGCGATTTCCTCTG
1 GGTATTTCACAGCGATTTCCTCTA
65845442 GGTATT
1 GGTATT
65845448 ATATATATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.19, C:0.20, G:0.20, T:0.41
Consensus pattern (24 bp):
GGTATTTCACAGCGATTTCCTCTA
Found at i:65850974 original size:40 final size:40
Alignment explanation
Indices: 65850926--65851193 Score: 464
Period size: 40 Copynumber: 6.7 Consensus size: 40
65850916 GCAAACACCT
* * *
65850926 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
65850966 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* * *
65851006 TTGCCTTCGGGTCATAGCCCGGACATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
65851046 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
65851086 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
65851126 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
65851166 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
65851194 TCCAATGCTC
Statistics
Matches: 215, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 215 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:65859804 original size:40 final size:40
Alignment explanation
Indices: 65859756--65860023 Score: 464
Period size: 40 Copynumber: 6.7 Consensus size: 40
65859746 GCAAACACCT
* * *
65859756 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
65859796 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* * *
65859836 TTGCCTTCGGGTCATAGCCCGGACATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
65859876 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
65859916 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
65859956 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
65859996 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
65860024 TCCAATGCTC
Statistics
Matches: 215, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 215 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:65872264 original size:27 final size:25
Alignment explanation
Indices: 65872221--65872272 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 25
65872211 CAACACCTAG
*
65872221 GGGTATTTTGGTCATTTTTGCCCTTAA
1 GGGTATTTTGGT-AATTTT-CCCTTAA
65872248 GGGT-TTTTCGGTAATTTTCCCTTAA
1 GGGTATTTT-GGTAATTTTCCCTTAA
65872273 TTATTGTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
25 7 0.30
26 9 0.39
27 7 0.30
ACGTcount: A:0.15, C:0.15, G:0.21, T:0.48
Consensus pattern (25 bp):
GGGTATTTTGGTAATTTTCCCTTAA
Found at i:65872621 original size:29 final size:29
Alignment explanation
Indices: 65872589--65872655 Score: 89
Period size: 29 Copynumber: 2.3 Consensus size: 29
65872579 TATAGCCCCT
*
65872589 TTAGGCCCAAATCACCTGTATATGGCCCA
1 TTAGGCCCAAATCACATGTATATGGCCCA
* * **
65872618 TTAGGCCCAAATCACATTTATTTGGCCTG
1 TTAGGCCCAAATCACATGTATATGGCCCA
65872647 TTAGGCCCA
1 TTAGGCCCA
65872656 GTCACATTCA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.28
Consensus pattern (29 bp):
TTAGGCCCAAATCACATGTATATGGCCCA
Found at i:65876266 original size:29 final size:29
Alignment explanation
Indices: 65876226--65876337 Score: 104
Period size: 29 Copynumber: 3.9 Consensus size: 29
65876216 CTGTAACTGG
*
65876226 CCATTATGCCC-AATCAAATTCATATGGCC
1 CCATTAGGCCCAAATCAAATTCATATGG-C
* ** *
65876255 CCTTTAGGCCCAAATCACCTGT-ACATGGC
1 CCATTAGGCCCAAATCAAAT-TCATATGGC
*
65876284 CCATTAGGCCCAAATCAAATTTATATGGC
1 CCATTAGGCCCAAATCAAATTCATATGGC
* * *
65876313 CCGTTAGGCCC-AGTCACATTCATAT
1 CCATTAGGCCCAAATCAAATTCATAT
65876338 TCATGCTCAC
Statistics
Matches: 67, Mismatches: 13, Indels: 7
0.77 0.15 0.08
Matches are distributed among these distances:
28 12 0.18
29 43 0.64
30 11 0.16
31 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.27
Consensus pattern (29 bp):
CCATTAGGCCCAAATCAAATTCATATGGC
Found at i:65876321 original size:58 final size:57
Alignment explanation
Indices: 65876214--65876324 Score: 154
Period size: 58 Copynumber: 1.9 Consensus size: 57
65876204 AAATTCACAT
* *
65876214 ACCTGTAACTGGCCATTATGCCCAATCAAATTCATATGGCCCCTTTAGGCCCAAATC
1 ACCTGTAACTGGCCATTAGGCCCAATCAAATTCATATGGCCCCGTTAGGCCCAAATC
*
65876271 ACCTGT-ACATGGCCCATTAGGCCCAAATCAAATTTATATGG-CCCGTTAGGCCCA
1 ACCTGTAAC-TGG-CCATTAGGCCC-AATCAAATTCATATGGCCCCGTTAGGCCCA
65876325 GTCACATTCA
Statistics
Matches: 48, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
56 2 0.04
57 9 0.19
58 22 0.46
59 15 0.31
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (57 bp):
ACCTGTAACTGGCCATTAGGCCCAATCAAATTCATATGGCCCCGTTAGGCCCAAATC
Found at i:65878172 original size:16 final size:15
Alignment explanation
Indices: 65878151--65878180 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
65878141 GAATGGAGTA
65878151 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
65878167 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
65878181 TAAAACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:65880525 original size:18 final size:18
Alignment explanation
Indices: 65880504--65880540 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
65880494 TATTGTATTC
65880504 GATATATATATAGGGGAA
1 GATATATATATAGGGGAA
65880522 GATATATATATAGGGGAA
1 GATATATATATAGGGGAA
65880540 G
1 G
65880541 GTACATTATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.30, T:0.27
Consensus pattern (18 bp):
GATATATATATAGGGGAA
Found at i:65880696 original size:15 final size:15
Alignment explanation
Indices: 65880676--65880720 Score: 63
Period size: 15 Copynumber: 3.0 Consensus size: 15
65880666 TATGATATTG
65880676 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
65880691 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
* * *
65880706 AATCCTGGTTTTCTT
1 TATCTTGGATTTCTT
65880721 GTTATCTATA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.13, C:0.16, G:0.13, T:0.58
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:65883728 original size:50 final size:50
Alignment explanation
Indices: 65883619--65883908 Score: 228
Period size: 50 Copynumber: 5.7 Consensus size: 50
65883609 TGAGAACACA
* * * ** **
65883619 TGTGTAATACTATGTGCAGGCTACGATGTGTTTCAGATGGTTTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGACAG--TTAGGTCACG
* * *
65883671 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGACAGTTAGGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGACAGTTAGGTCACG
* * * * *
65883721 TGTGTAGTACTAAATGCAGGCTACTATGCGTACCCGAACAACTTCA-ATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAG-AC-AGTT-AGGTCACG
* *
65883773 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATC-GTTAAGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA-CAGTTAGGTCACG
* * ** * * ** *
65883823 TGTGTCGTACTAAGTGTAGGCTACTACATGTACC-GA-ATTTTTGGTTGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGACA-GTTAGGTCACG
* * *
65883872 TGTGTAGTGCTAACTGCAGGCTACTATGCGTACCAGA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
65883909 TAGCTTCGAT
Statistics
Matches: 188, Mismatches: 42, Indels: 18
0.76 0.17 0.07
Matches are distributed among these distances:
49 35 0.19
50 78 0.41
51 3 0.02
52 71 0.38
53 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGACAGTTAGGTCACG
Found at i:65883856 original size:102 final size:102
Alignment explanation
Indices: 65883666--65883856 Score: 267
Period size: 102 Copynumber: 1.9 Consensus size: 102
65883656 TGGTTTTAGG
* *
65883666 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGACAGTTAGGTCACATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACAGTTAAGTCACATGTGTAGTAC
**
65883731 TAAATGCAGGCTACTATGCGTACCCGAACAACTTCAA
66 TAAATGCAGGCTACTACACGTACCCGAACAACTTCAA
* * * *
65883768 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATC-GTTAAGTCACGTGTGTCGTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-CAGTTAAGTCACATGTGTAGTA
* * *
65883832 CTAAGTGTAGGCTACTACATGTACC
65 CTAAATGCAGGCTACTACACGTACC
65883857 GAATTTTTGG
Statistics
Matches: 77, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
102 76 0.99
103 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (102 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACAGTTAAGTCACATGTGTAGTAC
TAAATGCAGGCTACTACACGTACCCGAACAACTTCAA
Found at i:65884130 original size:16 final size:15
Alignment explanation
Indices: 65884109--65884138 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
65884099 GAATGAAGTA
65884109 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
65884125 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
65884139 TAAAACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:65909288 original size:44 final size:43
Alignment explanation
Indices: 65909238--65909391 Score: 156
Period size: 44 Copynumber: 3.6 Consensus size: 43
65909228 TGTGATATCA
65909238 TGTAAGACCACGTCTGGGACATTGGCATCGACTTATGATTTATG
1 TGTAAGACCACGTCTGGGACATTGGCATCGA-TTATGATTTATG
* *
65909282 TGTAAGACCACGTCTGGGACATTGGCAT-TA-TATCCAATTT-TG
1 TGTAAGACCACGTCTGGGACATTGGCATCGATTAT--GATTTATG
* * **
65909324 TGTAAGACC-CTGTCTAGGACAGTGGCATCGATATATGA-TTACA
1 TGTAAGACCAC-GTCTGGGACATTGGCATCGAT-TATGATTTATG
* *
65909367 TGTAAGACCACGTTTGGGACGTTGG
1 TGTAAGACCACGTCTGGGACATTGG
65909392 GATTGTACTA
Statistics
Matches: 90, Mismatches: 12, Indels: 17
0.76 0.10 0.14
Matches are distributed among these distances:
41 4 0.04
42 28 0.31
43 26 0.29
44 29 0.32
45 3 0.03
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGATTATGATTTATG
Done.