Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 203 of 356
Found at i:66244963 original size:27 final size:26
Alignment explanation
Indices: 66244923--66245033 Score: 105
Period size: 27 Copynumber: 4.2 Consensus size: 26
66244913 AGGAAGCGTC
* *
66244923 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* *
66244950 ATGGTGGCTCTGCCGCATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
* * *
66244977 CCGGTGGCTTTGGCACAATTATCTGTT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* * *
66245004 CTGGTGACTCGGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
66245030 CTGG
1 CTGG
66245034 CAGCCATGCT
Statistics
Matches: 68, Mismatches: 14, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
26 16 0.24
27 50 0.74
28 2 0.03
ACGTcount: A:0.16, C:0.23, G:0.25, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:66247068 original size:53 final size:54
Alignment explanation
Indices: 66246885--66247139 Score: 238
Period size: 55 Copynumber: 4.8 Consensus size: 54
66246875 ATTAGGGTTT
* * *
66246885 AAGGATACCATGTAAGACCAAGCCAAGGCATGGTAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGG-CATTGGTAA-GTTTCATAAGGA
* * **
66246940 AAGGATATCATGTAAGACCATGTCAAGGCATGGCATTCATAAGTTTCTATAAGGCA
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTC-ATAAGG-A
* * *
66246996 AA-GATCCCATGTAAAACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGA
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTCATAAGGA
* * * * *
66247048 AAGGATACCATGTAGGACCATGTCGAGACATGGCAATGGTAAGTTTC---A--A
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTCATAAGGA
** * * *
66247097 AAGGATACCACATAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAG
66247140 GTACCCATGT
Statistics
Matches: 167, Mismatches: 28, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
49 38 0.23
51 1 0.01
52 3 0.02
53 43 0.26
54 12 0.07
55 68 0.41
56 2 0.01
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTCATAAGGA
Found at i:66247091 original size:108 final size:110
Alignment explanation
Indices: 66246892--66247094 Score: 268
Period size: 108 Copynumber: 1.9 Consensus size: 110
66246882 TTTAAGGATA
* * *
66246892 CCATGTAAGACCAAGCCAAGGCATGGTAATTGGTAAGGTTTCTAAGGCAAGGATATCATGTAAGA
1 CCATGTAAAACCAAGCCAAGGCATGGTAATTGGTAAGGTTTCTAAGGAAAGGATACCATGTAAGA
* *
66246957 CCATGTCAAGGCATGGCATTCATAAGTTTCTATAAGGCAAAGATC
66 CCATGTCAAGACATGGCAATCATAAGTTTCTATAAGGCAAAGATC
* * * *
66247002 CCATGTAAAACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGAAAGGATACCATGTAGG
1 CCATGTAAAACCAAGCCAAGGCATGGTAATTGGTAAGGTTTC-TAAGGAAAGGATACCATGTAAG
* **
66247064 ACCATGTCGAGACATGGCAATGGTAAGTTTC
65 ACCATGTCAAGACATGGCAATCATAAGTTTC
66247095 AAAAGGATAC
Statistics
Matches: 80, Mismatches: 12, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
107 3 0.04
108 46 0.57
109 7 0.09
110 24 0.30
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (110 bp):
CCATGTAAAACCAAGCCAAGGCATGGTAATTGGTAAGGTTTCTAAGGAAAGGATACCATGTAAGA
CCATGTCAAGACATGGCAATCATAAGTTTCTATAAGGCAAAGATC
Found at i:66254735 original size:48 final size:50
Alignment explanation
Indices: 66254644--66254743 Score: 134
Period size: 48 Copynumber: 2.0 Consensus size: 50
66254634 AAGACCATGT
*
66254644 CAAGACATGGCATTGATAAGTTTCTATAAGGCAAAGGTCCCATGTAAGAC
1 CAAGACATGGCATTGATAAGTTTCTATAAGGCAAAGGTACCATGTAAGAC
* * *
66254694 CAAGGCATGGCATTGGTGAG-TTC-ATAAGGC-AAGGATACCATGTAAGAC
1 CAAGACATGGCATTGATAAGTTTCTATAAGGCAAAGG-TACCATGTAAGAC
66254742 CA
1 CA
66254744 TGTCGAGACA
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
47 4 0.09
48 21 0.47
49 3 0.07
50 17 0.38
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (50 bp):
CAAGACATGGCATTGATAAGTTTCTATAAGGCAAAGGTACCATGTAAGAC
Found at i:66260390 original size:22 final size:20
Alignment explanation
Indices: 66260360--66260407 Score: 60
Period size: 22 Copynumber: 2.3 Consensus size: 20
66260350 TGAAATTTTA
*
66260360 ATTAGTATTATGAGATAAAATT
1 ATTATTATTATGAGA-AAAA-T
*
66260382 ATTATTATTATTAGAAAAAT
1 ATTATTATTATGAGAAAAAT
66260402 ATTATT
1 ATTATT
66260408 GTATGTATGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 7 0.29
21 4 0.17
22 13 0.54
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (20 bp):
ATTATTATTATGAGAAAAAT
Found at i:66268837 original size:17 final size:17
Alignment explanation
Indices: 66268804--66268871 Score: 52
Period size: 17 Copynumber: 4.0 Consensus size: 17
66268794 ATAAATATTT
*
66268804 TTAATTCAA-TTAATTAA
1 TTAATT-AATTTACTTAA
66268821 TTAATTAATTTACTTAA
1 TTAATTAATTTACTTAA
* *
66268838 CTAAATTAATTT-CTCAA
1 -TTAATTAATTTACTTAA
*
66268855 TTAGA-TAATTTTCTTAA
1 TTA-ATTAATTTACTTAA
66268872 CTCAATAATA
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
16 10 0.24
17 22 0.52
18 10 0.24
ACGTcount: A:0.41, C:0.09, G:0.01, T:0.49
Consensus pattern (17 bp):
TTAATTAATTTACTTAA
Found at i:66272547 original size:14 final size:14
Alignment explanation
Indices: 66272528--66272554 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
66272518 TAATATCTTA
66272528 TCTATATAATATAT
1 TCTATATAATATAT
66272542 TCTATATAATATA
1 TCTATATAATATA
66272555 CAAAACTCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.48
Consensus pattern (14 bp):
TCTATATAATATAT
Found at i:66275577 original size:40 final size:40
Alignment explanation
Indices: 66275486--66275655 Score: 227
Period size: 40 Copynumber: 4.3 Consensus size: 40
66275476 TCCTCGTTCA
* * * *
66275486 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACG
*
66275525 AATGCCTTCGGGACGTAACCCGGATTTA-TCAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAGT-AACTCGCACG
* *
66275565 AATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACG
* *
66275605 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACG
*
66275645 AAGGCCTTCGG
1 AATGCCTTCGG
66275656 ATCTTAGTCC
Statistics
Matches: 117, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
38 1 0.01
39 33 0.28
40 82 0.70
41 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACG
Found at i:66283489 original size:40 final size:40
Alignment explanation
Indices: 66283398--66283567 Score: 218
Period size: 40 Copynumber: 4.3 Consensus size: 40
66283388 TCCTCGTTCA
* * * *
66283398 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACG
* *
66283437 AATGCCTTCGGGACGTAACACGGATTTA-TCAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAGT-AACTCGCACG
* *
66283477 AATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACG
* *
66283517 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACG
*
66283557 AAGGCCTTCGG
1 AATGCCTTCGG
66283568 ATCTTAGTCC
Statistics
Matches: 115, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
38 1 0.01
39 32 0.28
40 81 0.70
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACG
Found at i:66288180 original size:24 final size:24
Alignment explanation
Indices: 66288153--66288202 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
66288143 TTTGAACAAT
*
66288153 AATATACAATAA-CATATTAAAATC
1 AATA-ACAATAAGCAAATTAAAATC
* *
66288177 AATAAGAATAAGTAAATTAAAATC
1 AATAACAATAAGCAAATTAAAATC
66288201 AA
1 AA
66288203 CATAATTTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
23 6 0.27
24 16 0.73
ACGTcount: A:0.62, C:0.08, G:0.04, T:0.26
Consensus pattern (24 bp):
AATAACAATAAGCAAATTAAAATC
Found at i:66293590 original size:48 final size:48
Alignment explanation
Indices: 66293352--66293596 Score: 245
Period size: 48 Copynumber: 5.2 Consensus size: 48
66293342 GGGTTATGTA
* *
66293352 TGATGCCATGTAAGACCATGTCTGGGACAT-GCTTTGGCATCGATATG
1 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
* ** * *
66293399 TAATTTCATGTAAGACCATAG-CTAGG-C-T---ATCGGCATCGATATG
1 TGATCCCATGTAAGACCAT-GTCTGGGACATGGCATTGGCATCGATATG
* * ** *
66293442 TGACCCCATGTAAAACCATGTCT-GGACATGGCATTGGCATCGACCTA
1 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
* * * ** *
66293489 CGATCCCATGTAAAACCATGTCTGGAACATGGCATTGGCATCGACCTA
1 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
* *
66293537 CGATCCCATGTAAGACCATGTCTGGGATATGGCATTGGCATCGATATG
1 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
66293585 TGATCCCATGTA
1 TGATCCCATGTA
66293597 TGAGCATATC
Statistics
Matches: 165, Mismatches: 25, Indels: 15
0.80 0.12 0.07
Matches are distributed among these distances:
42 3 0.02
43 30 0.18
44 1 0.01
45 1 0.01
46 1 0.01
47 52 0.32
48 77 0.47
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (48 bp):
TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
Found at i:66293613 original size:48 final size:48
Alignment explanation
Indices: 66293446--66293626 Score: 168
Period size: 48 Copynumber: 3.8 Consensus size: 48
66293436 GATATGTGAC
* * * * *
66293446 CCCATGTAAAACCATGT-CTGGACATGGCATTGGCATCGACCTACGAT
1 CCCATGTAAGACCATATCCAGGATATGGCATTGGCATCGACATACGAT
* * * * *
66293493 CCCATGTAAAACCATGT-CTGGAACATGGCATTGGCATCGACCTACGAT
1 CCCATGTAAGACCATATCCAGG-ATATGGCATTGGCATCGACATACGAT
* ** * **
66293541 CCCATGTAAGACCATGTCTGGGATATGGCATTGGCATCGATATGTGAT
1 CCCATGTAAGACCATATCCAGGATATGGCATTGGCATCGACATACGAT
* * *
66293589 CCCATGTATGAGCATATCCAGGATATGGCATTGTCATC
1 CCCATGTAAGACCATATCCAGGATATGGCATTGGCATC
66293627 CTACCATGTA
Statistics
Matches: 118, Mismatches: 14, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
47 21 0.18
48 95 0.81
49 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (48 bp):
CCCATGTAAGACCATATCCAGGATATGGCATTGGCATCGACATACGAT
Found at i:66293617 original size:96 final size:96
Alignment explanation
Indices: 66293357--66293626 Score: 250
Period size: 96 Copynumber: 2.9 Consensus size: 96
66293347 ATGTATGATG
* * ** *
66293357 CCATGTAAGACCATGTCTGGGACAT-GCTTTGGCATCGATATGTAATTTCATGTAAGACCATAGC
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGATCCCATGTAAGACCATATC
* * * **
66293421 TAGGCTAT--C---GGCATCGATATGTGACC
66 CAGGATATGGCATTGGCATCGACATACGACC
* ** ** * *
66293447 CCATGTAAAACCATGTCT-GGACATGGCATTGGCATCGACCTACGATCCCATGTAAAACCATGT-
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGATCCCATGTAAGACCATATC
* * * *
66293510 CTGGAACATGGCATTGGCATCGACCTACGATC
66 CAGG-ATATGGCATTGGCATCGACATACGACC
* * *
66293542 CCATGTAAGACCATGTCTGGGATATGGCATTGGCATCGATATGTGATCCCATGTATGAGCATATC
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGATCCCATGTAAGACCATATC
*
66293607 CAGGATATGGCATTGTCATC
66 CAGGATATGGCATTGGCATC
66293627 CTACCATGTA
Statistics
Matches: 137, Mismatches: 34, Indels: 12
0.75 0.19 0.07
Matches are distributed among these distances:
89 8 0.06
90 46 0.34
92 1 0.01
95 29 0.21
96 50 0.36
97 3 0.02
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (96 bp):
CCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGATCCCATGTAAGACCATATC
CAGGATATGGCATTGGCATCGACATACGACC
Found at i:66302288 original size:23 final size:23
Alignment explanation
Indices: 66302260--66302328 Score: 64
Period size: 23 Copynumber: 3.3 Consensus size: 23
66302250 TTTAATCAAT
66302260 AAATAAACCTTAAAACTTAATCG
1 AAATAAACCTTAAAACTTAATCG
*
66302283 AAATAAA--TT----TTTCAAT--
1 AAATAAACCTTAAAACTT-AATCG
66302299 AAATAAACCTTAAAACTTAATCG
1 AAATAAACCTTAAAACTTAATCG
66302322 AAATAAA
1 AAATAAA
66302329 TTTTTCAACT
Statistics
Matches: 35, Mismatches: 2, Indels: 18
0.64 0.04 0.33
Matches are distributed among these distances:
16 7 0.20
17 2 0.06
18 5 0.14
21 5 0.14
22 2 0.06
23 14 0.40
ACGTcount: A:0.55, C:0.13, G:0.03, T:0.29
Consensus pattern (23 bp):
AAATAAACCTTAAAACTTAATCG
Found at i:66302303 original size:39 final size:39
Alignment explanation
Indices: 66302255--66302336 Score: 164
Period size: 39 Copynumber: 2.1 Consensus size: 39
66302245 AATATTTTAA
66302255 TCAATAAATAAACCTTAAAACTTAATCGAAATAAATTTT
1 TCAATAAATAAACCTTAAAACTTAATCGAAATAAATTTT
66302294 TCAATAAATAAACCTTAAAACTTAATCGAAATAAATTTT
1 TCAATAAATAAACCTTAAAACTTAATCGAAATAAATTTT
66302333 TCAA
1 TCAA
66302337 CTTTGAATTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.51, C:0.13, G:0.02, T:0.33
Consensus pattern (39 bp):
TCAATAAATAAACCTTAAAACTTAATCGAAATAAATTTT
Found at i:66304568 original size:48 final size:48
Alignment explanation
Indices: 66304431--66304610 Score: 201
Period size: 48 Copynumber: 3.9 Consensus size: 48
66304421 GGTTATGTAC
* *
66304431 GATCCCATGTAAGACCATGTCTGAGACATGGCTTTGGCATCGATATGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
* ** * * *
66304479 AATTTCGTGTAAGATCATAG-CTGGG-C-T---ATCGGCATCGATATGT
1 GATCCCATGTAAGACCAT-GTCTGGGACATGGCATTGGCATCGATATGT
*
66304522 GATCCCATGTAAGACCATGTCTGGGACATGGAATTGGCATCGATATGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
* * *
66304570 GATCCCATGTAAGACCATATCCGGGATATGGCATTGGCATC
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
66304611 CTACCATGTG
Statistics
Matches: 107, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
42 1 0.01
43 32 0.30
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 69 0.64
49 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (48 bp):
GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
Found at i:66312339 original size:23 final size:21
Alignment explanation
Indices: 66312298--66312340 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
66312288 TTTTTAGTTT
66312298 AATTATATTAAATGGTTAAAG
1 AATTATATTAAATGGTTAAAG
*
66312319 AATTATGATTTAATGGATTAAA
1 AATTAT-ATTAAATGG-TTAAA
66312341 ATGGTAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 6 0.32
22 8 0.42
23 5 0.26
ACGTcount: A:0.47, C:0.00, G:0.14, T:0.40
Consensus pattern (21 bp):
AATTATATTAAATGGTTAAAG
Found at i:66317139 original size:23 final size:23
Alignment explanation
Indices: 66317110--66317155 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
66317100 AAAGGAACTA
66317110 AAAGTACTAGTAATGACTGTCTT
1 AAAGTACTAGTAATGACTGTCTT
66317133 AAAGTACTAGTAATGACTGTCTT
1 AAAGTACTAGTAATGACTGTCTT
66317156 TTTATTATCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (23 bp):
AAAGTACTAGTAATGACTGTCTT
Found at i:66324223 original size:40 final size:40
Alignment explanation
Indices: 66324166--66324265 Score: 148
Period size: 40 Copynumber: 2.5 Consensus size: 40
66324156 CGGATGATAA
*
66324166 CCGGGCTAAGCCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTGACTATA-T
* *
66324206 CTGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTGACTATAT
*
66324246 CCGGGCTAAGTCCCGAAGGC
1 CCGGGCTAAGCCCCGAAGGC
66324266 GGGCTAAGTC
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
40 53 0.98
41 1 0.02
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTGACTATAT
Found at i:66324270 original size:18 final size:18
Alignment explanation
Indices: 66324247--66324283 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
66324237 TTACTATATC
66324247 CGGGCTAAGTCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
66324265 CGGGCTAAGTCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
66324283 C
1 C
66324284 ATTTGTGCGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.22, C:0.30, G:0.38, T:0.11
Consensus pattern (18 bp):
CGGGCTAAGTCCCGAAGG
Found at i:66324298 original size:58 final size:58
Alignment explanation
Indices: 66324208--66324321 Score: 210
Period size: 58 Copynumber: 2.0 Consensus size: 58
66324198 GACTAATTCT
*
66324208 GGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGC
1 GGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGC
*
66324266 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAG
1 GGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAG
66324322 ACATTTGAGC
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
58 54 1.00
ACGTcount: A:0.24, C:0.25, G:0.31, T:0.21
Consensus pattern (58 bp):
GGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGC
Found at i:66324320 original size:40 final size:40
Alignment explanation
Indices: 66324265--66324361 Score: 135
Period size: 40 Copynumber: 2.5 Consensus size: 40
66324255 GTCCCGAAGG
*
66324265 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAAC
* *
66324305 CGGGCTAAGTCCCGAAGACATTTGAGCGAGTAGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATAAC
*
66324345 C-GGCTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
66324362 TACTTGGTTT
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
39 16 0.31
40 35 0.69
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.22
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATAAC
Found at i:66324342 original size:98 final size:97
Alignment explanation
Indices: 66324167--66324361 Score: 268
Period size: 98 Copynumber: 2.0 Consensus size: 97
66324157 GGATGATAAC
* * * * *
66324167 CGGGCTAAGCCCCGAAGGCATTTGTGCTAGTGACTAATTCTGGGCTAAGCCCCGAAGGCATTTGT
1 CGGGCTAAGCCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCCGAAGACATTTGA
*
66324232 GCGAGTTACTATATCCGGGCTAAGTCCCGAAGG
66 GCGAGTTACTATATCC-GGCTAAATCCCGAAGG
* * *
66324265 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGACATTTG
1 CGGGCTAAGCCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAGCCCCGAAGACATTTG
66324329 AGCGAG-TAGCTATATCCGGCTAAATCCCGAAGG
65 AGCGAGTTA-CTATATCCGGCTAAATCCCGAAGG
66324362 TACTTGGTTT
Statistics
Matches: 86, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
97 19 0.22
98 67 0.78
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.23
Consensus pattern (97 bp):
CGGGCTAAGCCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCCGAAGACATTTGA
GCGAGTTACTATATCCGGCTAAATCCCGAAGG
Found at i:66338081 original size:39 final size:40
Alignment explanation
Indices: 66337970--66338186 Score: 262
Period size: 40 Copynumber: 5.5 Consensus size: 40
66337960 TGGATGATAA
* * * *
66337970 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTGGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAT
66338010 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* **
66338050 CCGGGCTAAGTCCCG-AGGCATTTTTTTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
66338089 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
66338129 CCGGGCTATGTCCCGAAGGCATTCGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
66338169 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
66338187 TACTTCGCTT
Statistics
Matches: 156, Mismatches: 18, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 52 0.33
40 104 0.67
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:66338182 original size:79 final size:79
Alignment explanation
Indices: 66337970--66338186 Score: 233
Period size: 79 Copynumber: 2.7 Consensus size: 79
66337960 TGGATGATAA
* * * * * * *
66337970 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTGGT-TCCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCG-AGGCATTCGAGCAAGTTACT-ATATCCGGGCTAAATCCCGAAGGCATTG
66338034 GTGCGAGTTACTATAT
64 GTGCGAGTTACTATAT
****** *
66338050 CCGGGCTAAGTCCCGAGGCATTTTTTTGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTGGT
1 CCGGGCTAAGTCCCGAGGCATTCGAGCAAGTTACTATATCCGGGCTAAATCCCGAAGGCATTGGT
66338115 GCGAGTTACTATAT
66 GCGAGTTACTATAT
* *
66338129 CCGGGCTATGTCCCGAAGGCATTCGAGCAAG-TAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCG-AGGCATTCGAGCAAGTTA-CTATATCCGGGCTAAATCCCGAAGG
66338187 TACTTCGCTT
Statistics
Matches: 117, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
79 84 0.72
80 32 0.27
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAGGCATTCGAGCAAGTTACTATATCCGGGCTAAATCCCGAAGGCATTGGT
GCGAGTTACTATAT
Found at i:66351317 original size:46 final size:46
Alignment explanation
Indices: 66351257--66351432 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 46
66351247 TATTTGGGCA
66351257 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* ** * * * *
66351303 TTCGAACTTATTGAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
66351348 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
66351396 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
66351433 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 18, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 58 0.56
47 26 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:66351412 original size:93 final size:93
Alignment explanation
Indices: 66351253--66351424 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
66351243 GGGATATTTG
* * ** *
66351253 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTTATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAACTCATTGAG
*
66351318 TTGAGTCTGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * *
66351346 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAACTCATTGAG
66351411 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
66351425 ACTTATGGGC
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAACTCATTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:66354058 original size:37 final size:36
Alignment explanation
Indices: 66354011--66354080 Score: 97
Period size: 37 Copynumber: 1.9 Consensus size: 36
66354001 CACTTTAATA
*
66354011 TTAAATTAATA-TAATACTATTAAGATAAGTATTAAAT
1 TTAAATTAATATTAA-ACTATTAAAATAA-TATTAAAT
*
66354048 TTAATTTAATATTAAACTATTAAAATAATATTA
1 TTAAATTAATATTAAACTATTAAAATAATATTA
66354081 TTTTTGGAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
36 5 0.17
37 22 0.73
38 3 0.10
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (36 bp):
TTAAATTAATATTAAACTATTAAAATAATATTAAAT
Found at i:66359319 original size:46 final size:46
Alignment explanation
Indices: 66359259--66359532 Score: 370
Period size: 46 Copynumber: 6.0 Consensus size: 46
66359249 TTTAACATGA
* * * * * * *
66359259 TGCCATAGTGTCTTTCAACTACGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
* *** ***
66359305 TGCCATGGTATCTTTCAACTATGGTCTTGTTCATTTCATATTTCGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
66359351 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
66359397 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
66359443 TTCCATGGTATCTTTCAACTATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
66359489 TGCCATGGTATCTTTTAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
66359533 AGAGCACACT
Statistics
Matches: 204, Mismatches: 23, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
45 4 0.02
46 200 0.98
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:66370807 original size:49 final size:47
Alignment explanation
Indices: 66370735--66370918 Score: 172
Period size: 49 Copynumber: 3.7 Consensus size: 47
66370725 TGAGGTCACG
*
66370735 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACTGAATAATTCGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-AATAATT-GTCGCA
* * * * *
66370784 TGTGTAGTACTAAGTGCAAGCTACTATGCGTACCCTAA-AACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA--CTAATAA-T-TG-TCGCA
* * * *
66370835 TGTGTAGTACTAAATGCAGGCTACTACATGTACCAGATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTA-ATAATT-GTCGCA
* *
66370884 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTA
66370919 GATAGCTTCG
Statistics
Matches: 107, Mismatches: 20, Indels: 16
0.75 0.14 0.11
Matches are distributed among these distances:
49 66 0.62
50 7 0.07
51 34 0.32
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.30
Consensus pattern (47 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAATAATTGTCGCA
Found at i:66370907 original size:100 final size:100
Alignment explanation
Indices: 66370730--66370916 Score: 295
Period size: 100 Copynumber: 1.9 Consensus size: 100
66370720 CATTGTGAGG
* * * *
66370730 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACTGAATAATTCGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAATGCAGGCTACTACATGTACAGAATAATTCGTCGCATGTGTAGTACT
66370795 AAGTGCAAGCTACTATGCGTACCCTAAAACTGTGA
66 AAGTGCAAGCTACTATGCGTACCCTAAAACTGTGA
* *
66370830 TCACGTGTGTAGTACTAAATGCAGGCTACTACATGTACCAG-ATTATTGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAATGCAGGCTACTACATGTA-CAGAATAATTCGTCGCATGTGTAGTAC
*
66370894 TAAGTGCAGGCTACTATGCGTAC
65 TAAGTGCAAGCTACTATGCGTAC
66370917 TAGATAGCTT
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
100 77 0.97
101 2 0.03
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAATGCAGGCTACTACATGTACAGAATAATTCGTCGCATGTGTAGTACT
AAGTGCAAGCTACTATGCGTACCCTAAAACTGTGA
Found at i:66374399 original size:8 final size:8
Alignment explanation
Indices: 66374373--66374415 Score: 59
Period size: 8 Copynumber: 5.4 Consensus size: 8
66374363 TGGCTTACAA
66374373 CATATAAT
1 CATATAAT
** *
66374381 CATGCACT
1 CATATAAT
66374389 CATATAAT
1 CATATAAT
66374397 CATATAAT
1 CATATAAT
66374405 CATATAAT
1 CATATAAT
66374413 CAT
1 CAT
66374416 GCTATAACAT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (8 bp):
CATATAAT
Found at i:66378709 original size:46 final size:46
Alignment explanation
Indices: 66378659--66378834 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
66378649 TGATTGAGCA
66378659 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
66378705 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
66378750 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
66378798 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
66378835 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 12, Indels: 20
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 59 0.55
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:66378815 original size:93 final size:93
Alignment explanation
Indices: 66378656--66378827 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
66378646 GGATGATTGA
* *
66378656 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGTCCGAACTCGTTGAGT
*
66378721 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
66378749 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGTCC-GAACTCGTTGAG
66378813 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
66378828 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:66386029 original size:46 final size:46
Alignment explanation
Indices: 66385979--66386247 Score: 295
Period size: 46 Copynumber: 5.8 Consensus size: 46
66385969 TGATTGAGCA
66385979 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
66386025 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
66386070 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
66386118 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
66386163 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
66386211 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
66386248 GCGGGTTATA
Statistics
Matches: 189, Mismatches: 15, Indels: 38
0.78 0.06 0.16
Matches are distributed among these distances:
42 4 0.02
43 10 0.05
45 8 0.04
46 90 0.48
47 58 0.31
48 6 0.03
50 9 0.05
51 4 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:66386135 original size:93 final size:93
Alignment explanation
Indices: 66385976--66386240 Score: 496
Period size: 93 Copynumber: 2.8 Consensus size: 93
66385966 GGATGATTGA
66385976 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
66386041 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
66386069 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
66386134 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
66386162 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC-GAACTCGTTGAG
66386226 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
66386241 CTTATGGGCG
Statistics
Matches: 169, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
92 2 0.01
93 167 0.99
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:66388590 original size:5 final size:5
Alignment explanation
Indices: 66388580--66388606 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
66388570 CTGTGTGTTC
66388580 TTTAT TTTAT TTTAT TTTAT TTTAT TT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TT
66388607 CCACAATCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:66389224 original size:39 final size:39
Alignment explanation
Indices: 66389170--66389386 Score: 308
Period size: 39 Copynumber: 5.6 Consensus size: 39
66389160 AAACAATCAA
* * *
66389170 TAACAATCAGTTATTCAGTACAGTAATTTAGTCATTCAG
1 TAACTATCAATTATTCAGTACAGTAATTTAGTTATTCAG
* ** * *
66389209 TAACTATCAAATATTCAGTGTAGTAGTTTAGTTATTCAA
1 TAACTATCAATTATTCAGTACAGTAATTTAGTTATTCAG
* *
66389248 TAACTATCAACTATTCAATACAGTAATTTAGTTATTCAG
1 TAACTATCAATTATTCAGTACAGTAATTTAGTTATTCAG
* * *
66389287 TAACTATCAATTATTCAGTACAGTAGTTTATTTATTCAA
1 TAACTATCAATTATTCAGTACAGTAATTTAGTTATTCAG
*
66389326 TAACTATCAATTATTCAATACAGTAATTTAGTTATTCAG
1 TAACTATCAATTATTCAGTACAGTAATTTAGTTATTCAG
66389365 TAACTATCAATTATTCAGTACA
1 TAACTATCAATTATTCAGTACA
66389387 CTAGTTTACC
Statistics
Matches: 154, Mismatches: 24, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 154 1.00
ACGTcount: A:0.37, C:0.14, G:0.09, T:0.40
Consensus pattern (39 bp):
TAACTATCAATTATTCAGTACAGTAATTTAGTTATTCAG
Found at i:66389295 original size:78 final size:78
Alignment explanation
Indices: 66389166--66389394 Score: 368
Period size: 78 Copynumber: 2.9 Consensus size: 78
66389156 TATCAAACAA
* * * * * **
66389166 TCAATAACAATCAGTTATTCAGTACAGTAATTTAGTCATTCAGTAACTATCAAATATTCAGTGTA
1 TCAATAACTATCAATTATTCAATACAGTAATTTAGTTATTCAGTAACTATCAATTATTCAGTACA
66389231 GTAGTTTAGTTAT
66 GTAGTTTAGTTAT
*
66389244 TCAATAACTATCAACTATTCAATACAGTAATTTAGTTATTCAGTAACTATCAATTATTCAGTACA
1 TCAATAACTATCAATTATTCAATACAGTAATTTAGTTATTCAGTAACTATCAATTATTCAGTACA
*
66389309 GTAGTTTATTTAT
66 GTAGTTTAGTTAT
66389322 TCAATAACTATCAATTATTCAATACAGTAATTTAGTTATTCAGTAACTATCAATTATTCAGTACA
1 TCAATAACTATCAATTATTCAATACAGTAATTTAGTTATTCAGTAACTATCAATTATTCAGTACA
*
66389387 CTAGTTTA
66 GTAGTTTA
66389395 CCCCTATTAA
Statistics
Matches: 140, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
78 140 1.00
ACGTcount: A:0.37, C:0.14, G:0.09, T:0.40
Consensus pattern (78 bp):
TCAATAACTATCAATTATTCAATACAGTAATTTAGTTATTCAGTAACTATCAATTATTCAGTACA
GTAGTTTAGTTAT
Found at i:66389302 original size:18 final size:19
Alignment explanation
Indices: 66389279--66389389 Score: 93
Period size: 18 Copynumber: 5.8 Consensus size: 19
66389269 AGTAATTTAG
66389279 TTATTCAGTA-ACTATCAA
1 TTATTCAGTACACTATCAA
* * *
66389297 TTATTCAGTACAGTAGTTTAT
1 TTATTCAGTACACTA--TCAA
*
66389318 TTATTCAATA-ACTATCAA
1 TTATTCAGTACACTATCAA
* * * *
66389336 TTATTCAATACAGTAATTTAG
1 TTATTCAGTACACT-A-TCAA
66389357 TTATTCAGTA-ACTATCAA
1 TTATTCAGTACACTATCAA
66389375 TTATTCAGTACACTA
1 TTATTCAGTACACTA
66389390 GTTTACCCCT
Statistics
Matches: 72, Mismatches: 14, Indels: 13
0.73 0.14 0.13
Matches are distributed among these distances:
18 34 0.47
19 10 0.14
20 6 0.08
21 22 0.31
ACGTcount: A:0.37, C:0.14, G:0.07, T:0.41
Consensus pattern (19 bp):
TTATTCAGTACACTATCAA
Found at i:66394550 original size:79 final size:81
Alignment explanation
Indices: 66394414--66394596 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
66394404 TCGAATGATG
* *
66394414 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
*
66394478 TGTGCGAGTTACTA-A
66 TGCGCGAGTTACTATA
* * * **
66394493 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
66394555 TTTGCGCGAGTTACTATA
64 TTTGCGCGAGTTACTATA
* *
66394573 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
66394597 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGCGCGAGTTACTATA
Found at i:66394605 original size:40 final size:39
Alignment explanation
Indices: 66394415--66394598 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 39
66394405 CGAATGATGT
* * * *
66394415 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* *
66394455 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
66394495 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
66394533 TCCGGGTTAAGTCCCGAAGGCATTTGCGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
66394574 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
66394599 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
39 35 0.28
40 80 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:66394620 original size:79 final size:79
Alignment explanation
Indices: 66394467--66394631 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
66394457 GGACTAAGAT
* * **
66394467 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGCGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
66394532 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
66394546 CCGAAGGCATTTGCGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGCGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
66394609 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
66394625 CCGAAGG
1 CCGAAGG
66394632 TACGTGATTC
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGCGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:66407765 original size:247 final size:247
Alignment explanation
Indices: 66407329--66407822 Score: 819
Period size: 247 Copynumber: 2.0 Consensus size: 247
66407319 ATCGACGAGT
66407329 AGAAGAACATACGTTAGATCCAAGTCAAACTAATGATCTGTGTCGAAGATCAAAGAAGAAAACTG
1 AGAAGAACATACGTTAGATCCAAGTCAAACTAATGATCTGTGTCGAAGATCAAAGAAGAAAACTG
* *
66407394 TTTGGATTTTAGTTTGTAGAGTAGTGGCGTTCAAAGTTATTTCATAAAAAAACTAAAATGTAAAA
66 TTTGGATTTTAGTTTGCAGAGTAGTGACGTTCAAAGTTATTTCATAAAAAAACTAAAATGTAAAA
*
66407459 TAGAAGGGAAATGAGAGCTTTTTATTGGTGCAAGCGATGCAAATGGAGAAGGCCATATAGGAGCG
131 GAGAAGGGAAATGAGAGCTTTTTATTGGTGCAAGCGATGCAAATGGAGAAGGCCATATAGGAGCG
* *
66407524 TTTTTAACAATCCAATAACTTAAATGAAAACTTTTGAATTGTTGGGGATCGA
196 TTTTTAACAACCCAATAACTTAAATGAAAACTTCTGAATTGTTGGGGATCGA
* * * *
66407576 AGAAGAACATATGTTAGATCCAAGTCAAACTGATGATCTGTGTTGGAGATCAAAGAAGAAAACTG
1 AGAAGAACATACGTTAGATCCAAGTCAAACTAATGATCTGTGTCGAAGATCAAAGAAGAAAACTG
* * * *
66407641 TTTGGATTTTGGTTTGCAGATTAGTGACGTTCAAAGTTATTTCATGAAAAAACTGAAATGTAAAA
66 TTTGGATTTTAGTTTGCAGAGTAGTGACGTTCAAAGTTATTTCATAAAAAAACTAAAATGTAAAA
66407706 GAGAAGGGGAAA-GAGAGCTTTTTATTGGTGCAAGCGATGCAAATGGAGAAGGCCATATAGGAGC
131 GAGAA-GGGAAATGAGAGCTTTTTATTGGTGCAAGCGATGCAAATGGAGAAGGCCATATAGGAGC
* * * *
66407770 GTTTTTAATAGCCCAATGACTTAAATGGAAACTTCTGAATTGTTGGGGATCGA
195 GTTTTTAACAACCCAATAACTTAAATGAAAACTTCTGAATTGTTGGGGATCGA
66407823 CCCGTATATG
Statistics
Matches: 229, Mismatches: 17, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
247 223 0.97
248 6 0.03
ACGTcount: A:0.37, C:0.11, G:0.24, T:0.28
Consensus pattern (247 bp):
AGAAGAACATACGTTAGATCCAAGTCAAACTAATGATCTGTGTCGAAGATCAAAGAAGAAAACTG
TTTGGATTTTAGTTTGCAGAGTAGTGACGTTCAAAGTTATTTCATAAAAAAACTAAAATGTAAAA
GAGAAGGGAAATGAGAGCTTTTTATTGGTGCAAGCGATGCAAATGGAGAAGGCCATATAGGAGCG
TTTTTAACAACCCAATAACTTAAATGAAAACTTCTGAATTGTTGGGGATCGA
Found at i:66415643 original size:44 final size:45
Alignment explanation
Indices: 66415595--66415686 Score: 168
Period size: 44 Copynumber: 2.1 Consensus size: 45
66415585 AGCAATTTTC
*
66415595 ATACATGTCTGCAATGGTTTATGAA-TTTTTTTGGCACTAGCATT
1 ATACATGTCTGCAATGGTTTATGAATTTTTTTTGGCACTAACATT
66415639 ATACATGTCTGCAATGGTTTATGAATTTTTTTTGGCACTAACATT
1 ATACATGTCTGCAATGGTTTATGAATTTTTTTTGGCACTAACATT
66415684 ATA
1 ATA
66415687 TCAAGTTTGA
Statistics
Matches: 46, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
44 25 0.54
45 21 0.46
ACGTcount: A:0.27, C:0.13, G:0.16, T:0.43
Consensus pattern (45 bp):
ATACATGTCTGCAATGGTTTATGAATTTTTTTTGGCACTAACATT
Found at i:66417835 original size:18 final size:18
Alignment explanation
Indices: 66417814--66417851 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
66417804 ATCTATTGAG
66417814 GAAT-GTAAAAATAGAAAA
1 GAATGGTAAAAATA-AAAA
*
66417832 GAATGGTCAAAATAAAAA
1 GAATGGTAAAAATAAAAA
66417850 GA
1 GA
66417852 TGCAATTCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.63, C:0.03, G:0.18, T:0.16
Consensus pattern (18 bp):
GAATGGTAAAAATAAAAA
Found at i:66422826 original size:26 final size:26
Alignment explanation
Indices: 66422797--66422904 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
66422787 TGGTACAAAT
66422797 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
66422823 TGATAATGGATTAGGTAAATATTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
66422849 TGATAATGGGTTAGGTCAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
66422875 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
66422901 TGAT
1 TGAT
66422905 GGGCATTTCA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.31, C:0.07, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:66429902 original size:26 final size:26
Alignment explanation
Indices: 66429873--66429980 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
66429863 TGGTACAAAT
66429873 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
66429899 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
66429925 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
66429951 TGATAATGGTTTAGGTAAATGTTCCG
1 TGATAATGGGTTAGGTAAATGTTCCA
66429977 TGAT
1 TGAT
66429981 GGGCATTTCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.31, C:0.07, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:66435623 original size:16 final size:17
Alignment explanation
Indices: 66435594--66435625 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
66435584 AAACATTAGA
66435594 GGCAAATGTGTAAATTT
1 GGCAAATGTGTAAATTT
66435611 GGCAAAT-TGTAAATT
1 GGCAAATGTGTAAATT
66435626 ATAGGCTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.38, C:0.06, G:0.22, T:0.34
Consensus pattern (17 bp):
GGCAAATGTGTAAATTT
Found at i:66435638 original size:19 final size:18
Alignment explanation
Indices: 66435588--66435638 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 18
66435578 AATGTGAAAC
*
66435588 ATTAGAGGCAAATGTGTAA
1 ATTATAGGCAAAT-TGTAA
66435607 ATT-T-GGCAAATTGTAA
1 ATTATAGGCAAATTGTAA
66435623 ATTATAGGCTAAATTG
1 ATTATAGGC-AAATTG
66435639 AATAGACTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
16 8 0.29
17 8 0.29
18 3 0.11
19 9 0.32
ACGTcount: A:0.39, C:0.06, G:0.22, T:0.33
Consensus pattern (18 bp):
ATTATAGGCAAATTGTAA
Found at i:66436042 original size:24 final size:24
Alignment explanation
Indices: 66435982--66436053 Score: 90
Period size: 24 Copynumber: 2.9 Consensus size: 24
66435972 CGGCACACCA
* *
66435982 CAGCTCGTATGAGCTTACCGATATAT
1 CAGCTCGTAAGAGCTTACCG-T-TTT
* *
66436008 CAGCTCATAAGAGCTTACTGTTTT
1 CAGCTCGTAAGAGCTTACCGTTTT
66436032 CAGCTCGTAAGAGCTTACCGTT
1 CAGCTCGTAAGAGCTTACCGTT
66436054 CAGCTCAATA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
24 22 0.55
25 1 0.03
26 17 0.43
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (24 bp):
CAGCTCGTAAGAGCTTACCGTTTT
Found at i:66436066 original size:22 final size:23
Alignment explanation
Indices: 66435982--66436071 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 23
66435972 CGGCACACCA
* *
66435982 CAGCTCGTATGAGCTTACCGATATAT
1 CAGCTCATAAGAGCTTACCG-T-T-T
*
66436008 CAGCTCATAAGAGCTTACTGTTTT
1 CAGCTCATAAGAGCTTACCG-TTT
*
66436032 CAGCTCGTAAGAGCTTACCG-TT
1 CAGCTCATAAGAGCTTACCGTTT
66436054 CAGCTCA-ATAGAGCTTAC
1 CAGCTCATA-AGAGCTTAC
66436072 TGTCCATCAG
Statistics
Matches: 56, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
21 1 0.02
22 17 0.30
24 19 0.34
25 1 0.02
26 18 0.32
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (23 bp):
CAGCTCATAAGAGCTTACCGTTT
Found at i:66436073 original size:46 final size:48
Alignment explanation
Indices: 66435982--66436074 Score: 129
Period size: 46 Copynumber: 1.9 Consensus size: 48
66435972 CGGCACACCA
*
66435982 CAGCTCGTATGAGCTTACCGATATATCAGCTCATAAGAGCTTACTGTTTT
1 CAGCTCGTAAGAGCTTACCG--ATATCAGCTCATAAGAGCTTACTGTTTT
66436032 CAGCTCGTAAGAGCTTACCG-T-TCAGCTCA-ATAGAGCTTACTGT
1 CAGCTCGTAAGAGCTTACCGATATCAGCTCATA-AGAGCTTACTGT
66436075 CCATCAGCTC
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
45 1 0.02
46 20 0.49
47 1 0.02
50 19 0.46
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (48 bp):
CAGCTCGTAAGAGCTTACCGATATCAGCTCATAAGAGCTTACTGTTTT
Found at i:66444149 original size:37 final size:37
Alignment explanation
Indices: 66444091--66444198 Score: 171
Period size: 37 Copynumber: 2.9 Consensus size: 37
66444081 TAGCTCGAAT
* * *
66444091 AATCCCCACACGTAGTTATCGGGTTTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
*
66444128 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
*
66444165 AATCTCCACACGTAGTCATCGAGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
66444199 ATATATTTCC
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
Found at i:66444399 original size:48 final size:48
Alignment explanation
Indices: 66444339--66444628 Score: 454
Period size: 48 Copynumber: 6.0 Consensus size: 48
66444329 ATATACACAC
* *
66444339 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
66444387 ATCTCATGCATATTTCACATTAGCCATTCGGATTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* **
66444435 ATCTCATACATATTCCATGTTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
66444483 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
66444531 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * * *
66444579 ATCTCATACATATTTCACACTAGCCATTAGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
66444627 AT
1 AT
66444629 ATTTATCTTG
Statistics
Matches: 220, Mismatches: 22, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 220 1.00
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:66450069 original size:47 final size:47
Alignment explanation
Indices: 66450010--66450141 Score: 158
Period size: 47 Copynumber: 2.8 Consensus size: 47
66450000 TGTAAATAAT
*
66450010 ACCTTGATTTGGCTACAGGCCATGGTATAGGTATTTTGAGA-AGAGCA
1 ACCTTGATTTGGCTACAGGCCATGGTATAGGTATTTTAAGATA-AGCA
* * ** **
66450057 ACCTTGATTTGGCTATAGGCCATGGTATAGGTACTCCAAGATAAGTT
1 ACCTTGATTTGGCTACAGGCCATGGTATAGGTATTTTAAGATAAGCA
* *
66450104 ACCTTGATTTGGCTACGGGTCATGGTATAGGTACTTTT
1 ACCTTGATTTGGCTACAGGCCATGGTATAGGTA-TTTT
66450142 CAATTGTGAT
Statistics
Matches: 70, Mismatches: 13, Indels: 3
0.81 0.15 0.03
Matches are distributed among these distances:
47 68 0.97
48 2 0.03
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (47 bp):
ACCTTGATTTGGCTACAGGCCATGGTATAGGTATTTTAAGATAAGCA
Found at i:66458849 original size:94 final size:93
Alignment explanation
Indices: 66458606--66458877 Score: 284
Period size: 94 Copynumber: 2.9 Consensus size: 93
66458596 GGTAAAGTGC
* * *
66458606 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTATCATCTTCGAGGTCGATGCCATGTCCCAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TCATCAT-GAGGCCGATG-CATGTCCCAG
*
66458671 ACATGGTCTTACACT-G-ACACATCTCGTAGT
63 ACAT-GTCTTACACTAGCACACATCTCATAGT
* * * ** * * *
66458701 CTATG-CATGTCCCAGACAT-GTCTTATACTGGCTTACGTCCCGAGGCTGATGCATGTCCTACAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTT-CATCATGAGGCCGATGCATGTCCCAGAC
* *
66458764 ATGTCTTACACTAGCACTCGTCTCAATA-T
65 ATGTCTTACACTAGCACACATCTC-ATAGT
* * *
66458793 CGATGCCATGTCCCAGACATGGCCTTACACTGGCTCTCATGATGTGGCCGATGCATGTCCCAGAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TCATCATGAGGCCGATGCATGTCCCAGAC
*
66458858 ATGTCTTACACTAGCTCACA
65 ATGTCTTACACTAGCACACA
66458878 CAAATGACCC
Statistics
Matches: 143, Mismatches: 27, Indels: 15
0.77 0.15 0.08
Matches are distributed among these distances:
90 10 0.07
91 13 0.09
92 21 0.15
93 32 0.22
94 62 0.43
95 5 0.03
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (93 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTTCATCATGAGGCCGATGCATGTCCCAGACA
TGTCTTACACTAGCACACATCTCATAGT
Found at i:66462587 original size:40 final size:40
Alignment explanation
Indices: 66462532--66462719 Score: 322
Period size: 40 Copynumber: 4.7 Consensus size: 40
66462522 GAGCATTGGA
66462532 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
66462572 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
66462612 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
66462652 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* * *
66462692 ATATGTCCGGGTTAAGACCAGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
66462720 ATGTGTTTGC
Statistics
Matches: 140, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 140 1.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:66468979 original size:21 final size:21
Alignment explanation
Indices: 66468951--66469005 Score: 101
Period size: 21 Copynumber: 2.6 Consensus size: 21
66468941 AAAATAGGGC
66468951 ACACGCCCGTGTGGAAGGGTA
1 ACACGCCCGTGTGGAAGGGTA
*
66468972 ACATGCCCGTGTGGAAGGGTA
1 ACACGCCCGTGTGGAAGGGTA
66468993 ACACGCCCGTGTG
1 ACACGCCCGTGTG
66469006 ACCATTTTGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.22, C:0.25, G:0.36, T:0.16
Consensus pattern (21 bp):
ACACGCCCGTGTGGAAGGGTA
Found at i:66470158 original size:49 final size:50
Alignment explanation
Indices: 66470089--66470221 Score: 171
Period size: 49 Copynumber: 2.7 Consensus size: 50
66470079 TGGGTAAAGT
* *
66470089 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTATCATC-T-TCAAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCA-CATAACAAG
* * * * * *
66470138 GCCTATGCCAAGTCCCAGACATGGTCTTACACTAGCTCTCACATAACCAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCACATAACAAG
66470188 GCCGATGCCATGTCCCAGACATGGTCTTACACTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTG
66470222 ACATATCTCA
Statistics
Matches: 71, Mismatches: 11, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
48 1 0.01
49 37 0.52
50 33 0.46
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.26
Consensus pattern (50 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCACATAACAAG
Found at i:66470209 original size:50 final size:49
Alignment explanation
Indices: 66470088--66470255 Score: 170
Period size: 49 Copynumber: 3.5 Consensus size: 49
66470078 ATGGGTAAAG
* * *
66470088 TGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTATCATCTTCAA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCTACAA
* * * * *
66470137 GGCCTATGCCAAGTCCCAGACATGGTCTTACACTAGCTCTCA-CATAACCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATC-T-ACAA
66470187 TGCCGATGCCATGTCCCAGACATGGTCTTACACT-GAC-AT-ATCT-C-A
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTATCATCTACAA
*
66470232 TAGCTGATG-CATGTCCCAGACATG
1 T-GCCGATGCCATGTCCCAGACATG
66470256 CCTTATACTG
Statistics
Matches: 101, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
45 17 0.17
46 7 0.07
48 3 0.03
49 40 0.40
50 34 0.34
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.26
Consensus pattern (49 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCTACAA
Found at i:66476068 original size:20 final size:20
Alignment explanation
Indices: 66476027--66476068 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 20
66476017 GATAGTTATG
66476027 GTATATGGAATTGGTATAGTT
1 GTATATGGAATT-GTATAGTT
66476048 GTATATGGAATT-TAGTAGTT
1 GTATATGGAATTGTA-TAGTT
66476068 G
1 G
66476069 AATTGGTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 2 0.10
20 6 0.30
21 12 0.60
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.43
Consensus pattern (20 bp):
GTATATGGAATTGTATAGTT
Found at i:66477381 original size:21 final size:21
Alignment explanation
Indices: 66477356--66477423 Score: 68
Period size: 21 Copynumber: 3.3 Consensus size: 21
66477346 AATGTGTAAA
*
66477356 CAAGGGCACGTATGTGCAATT
1 CAAGGGCACGTATGTACAATT
* * *
66477377 CAAGGGTACCG-AAGTACAAAT
1 CAAGGGCA-CGTATGTACAATT
*
66477398 -AGGGGCACGTATGTACAATT
1 CAAGGGCACGTATGTACAATT
66477418 CAAGGG
1 CAAGGG
66477424 TATCAAAGTA
Statistics
Matches: 35, Mismatches: 9, Indels: 6
0.70 0.18 0.12
Matches are distributed among these distances:
19 2 0.06
20 13 0.37
21 18 0.51
22 2 0.06
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (21 bp):
CAAGGGCACGTATGTACAATT
Found at i:66477404 original size:41 final size:41
Alignment explanation
Indices: 66477353--66477584 Score: 232
Period size: 41 Copynumber: 5.6 Consensus size: 41
66477343 ATCAATGTGT
*
66477353 AAACAAGGGCACGTATGTGCAATTCAAGGGTACCGAAGTAC
1 AAACAGGGGCACGTATGTGCAATTCAAGGGTACCGAAGTAC
* * * *
66477394 AAATAGGGGCACGTATGTACAATTCAAGGGTATCAAAGTAC
1 AAACAGGGGCACGTATGTGCAATTCAAGGGTACCGAAGTAC
* * * ** * *
66477435 AAATAGAGGCATGTATGTATAAATT-AAGGGTACTGAACTAC
1 AAACAGGGGCACGTATGT-GCAATTCAAGGGTACCGAAGTAC
* * * *
66477476 AAAAAAAGGGCACATATGTGCAATTCAAGGGTATCGAAGTAC
1 -AAACAGGGGCACGTATGTGCAATTCAAGGGTACCGAAGTAC
* * * **
66477518 AAACAGAGGCACGTATGTGCAATTCAGGGGCACTAAAGTAC
1 AAACAGGGGCACGTATGTGCAATTCAAGGGTACCGAAGTAC
* *
66477559 AAACAAGGGCAAGTATGTGCAATTCA
1 AAACAGGGGCACGTATGTGCAATTCA
66477585 GGGAATAATT
Statistics
Matches: 153, Mismatches: 35, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
41 123 0.80
42 30 0.20
ACGTcount: A:0.40, C:0.16, G:0.25, T:0.20
Consensus pattern (41 bp):
AAACAGGGGCACGTATGTGCAATTCAAGGGTACCGAAGTAC
Found at i:66477549 original size:21 final size:21
Alignment explanation
Indices: 66477525--66477587 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 21
66477515 TACAAACAGA
66477525 GGCACGTATGTGCAATTCAGG
1 GGCACGTATGTGCAATTCAGG
* * * *
66477546 GGCAC-TAAAGTACAA-ACAAG
1 GGCACGT-ATGTGCAATTCAGG
*
66477566 GGCAAGTATGTGCAATTCAGG
1 GGCACGTATGTGCAATTCAGG
66477587 G
1 G
66477588 AATAATTAAC
Statistics
Matches: 30, Mismatches: 9, Indels: 6
0.67 0.20 0.13
Matches are distributed among these distances:
20 14 0.47
21 16 0.53
ACGTcount: A:0.33, C:0.17, G:0.30, T:0.19
Consensus pattern (21 bp):
GGCACGTATGTGCAATTCAGG
Found at i:66477560 original size:83 final size:82
Alignment explanation
Indices: 66477360--66477584 Score: 274
Period size: 83 Copynumber: 2.7 Consensus size: 82
66477350 TGTAAACAAG
* * * * *
66477360 GGCACGTATGTGCAATTCAAGGGTACCGAAGTACAAATAGGGGCACGTATGTACAATTCAAGGGT
1 GGCACGTATGTGCAATTCAAGGGTACTGAAGTACAAAAAAGGGCACATATGTGCAATTCAAGGGT
*
66477425 ATCAAAGTACAAATAGA
66 ATCAAAGTACAAACAGA
* ** *
66477442 GGCATGTATGTATAAATT-AAGGGTACTGAACTACAAAAAAAGGGCACATATGTGCAATTCAAGG
1 GGCACGTATGT-GCAATTCAAGGGTACTGAAGTAC-AAAAAAGGGCACATATGTGCAATTCAAGG
*
66477506 GTATCGAAGTACAAACAGA
64 GTATCAAAGTACAAACAGA
* * * *
66477525 GGCACGTATGTGCAATTCAGGGGCACTAAAGTACAAACAAGGGCA-AGTATGTGCAATTCA
1 GGCACGTATGTGCAATTCAAGGGTACTGAAGTACAAAAAAGGGCACA-TATGTGCAATTCA
66477585 GGGAATAATT
Statistics
Matches: 120, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
81 1 0.01
82 51 0.43
83 68 0.57
ACGTcount: A:0.39, C:0.16, G:0.25, T:0.21
Consensus pattern (82 bp):
GGCACGTATGTGCAATTCAAGGGTACTGAAGTACAAAAAAGGGCACATATGTGCAATTCAAGGGT
ATCAAAGTACAAACAGA
Found at i:66481246 original size:38 final size:38
Alignment explanation
Indices: 66481200--66481345 Score: 190
Period size: 38 Copynumber: 3.8 Consensus size: 38
66481190 GGCCTAAAGA
66481200 CCCGCAGGCTAT-ATGCTGG-AATTATATCCGGGTTAAAT
1 CCCGCAGGCT-TCATGCTGGTAA-TATATCCGGGTTAAAT
*
66481238 CCCACAGGCTTCATGCTGGTAATATATCCGGGTTAAAT
1 CCCGCAGGCTTCATGCTGGTAATATATCCGGGTTAAAT
* *
66481276 CCCGCAAGCTTCGTGCTGGTAATATATCCGGGTTAAAT
1 CCCGCAGGCTTCATGCTGGTAATATATCCGGGTTAAAT
* * *
66481314 CCCGCAGGCCT-AGTGCTGGTATTATATTCGGG
1 CCCGCAGGCTTCA-TGCTGGTAATATATCCGGG
66481346 CCTTCGTGCC
Statistics
Matches: 96, Mismatches: 9, Indels: 6
0.86 0.08 0.05
Matches are distributed among these distances:
37 1 0.01
38 93 0.97
39 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (38 bp):
CCCGCAGGCTTCATGCTGGTAATATATCCGGGTTAAAT
Found at i:66481399 original size:43 final size:43
Alignment explanation
Indices: 66481338--66481449 Score: 206
Period size: 43 Copynumber: 2.6 Consensus size: 43
66481328 GCTGGTATTA
*
66481338 TATTCGGGCCTTCGTGCCTAGTAGGCTTCGTGCCAGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTG
*
66481381 TATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCCAGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTG
66481424 TATTCGGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
66481450 GTAATGCCAG
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 67 1.00
ACGTcount: A:0.12, C:0.25, G:0.32, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTG
Found at i:66481458 original size:43 final size:43
Alignment explanation
Indices: 66481338--66481462 Score: 205
Period size: 43 Copynumber: 2.9 Consensus size: 43
66481328 GCTGGTATTA
* *
66481338 TATTCGGGCCTTCGTGCCTAGTAGGCTTCGTGCCAGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCAGTGATGTG
*
66481381 TATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCCAGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCAGTGATGTG
* *
66481424 TATTCGGGCCTTCGTGCCTAGCAGGCGTAATGCCAGTGA
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCAGTGA
66481463 AATGATATGT
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 77 1.00
ACGTcount: A:0.14, C:0.24, G:0.32, T:0.30
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCAGTGATGTG
Found at i:66487997 original size:23 final size:23
Alignment explanation
Indices: 66487967--66488013 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
66487957 TCGAGAAAGG
66487967 ATTGATCGGGCTTTTGTGAATTT
1 ATTGATCGGGCTTTTGTGAATTT
66487990 ATTGATCGGGCTTTTGTGAATTT
1 ATTGATCGGGCTTTTGTGAATTT
66488013 A
1 A
66488014 GAATGATGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.19, C:0.09, G:0.26, T:0.47
Consensus pattern (23 bp):
ATTGATCGGGCTTTTGTGAATTT
Found at i:66491869 original size:15 final size:15
Alignment explanation
Indices: 66491842--66491871 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
66491832 TATTGAATAG
66491842 AAATTTTCAAAAAAA
1 AAATTTTCAAAAAAA
66491857 AAATTCTTCAAAAAA
1 AAATT-TTCAAAAAA
66491872 TTTATTTCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.63, C:0.10, G:0.00, T:0.27
Consensus pattern (15 bp):
AAATTTTCAAAAAAA
Found at i:66503978 original size:21 final size:21
Alignment explanation
Indices: 66503953--66503993 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
66503943 AATTGTCCAC
66503953 ATTTTT-ACAAAAGAGTAAAT
1 ATTTTTAACAAAAGAGTAAAT
66503973 ATTTTTAACAAAAGAGTAAAT
1 ATTTTTAACAAAAGAGTAAAT
66503994 GGGCTAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.51, C:0.05, G:0.10, T:0.34
Consensus pattern (21 bp):
ATTTTTAACAAAAGAGTAAAT
Found at i:66504396 original size:21 final size:21
Alignment explanation
Indices: 66504332--66504386 Score: 110
Period size: 21 Copynumber: 2.6 Consensus size: 21
66504322 CAATATTTAT
66504332 TTATATTTTAATTTTAAAATA
1 TTATATTTTAATTTTAAAATA
66504353 TTATATTTTAATTTTAAAATA
1 TTATATTTTAATTTTAAAATA
66504374 TTATATTTTAATT
1 TTATATTTTAATT
66504387 ATATCGTATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (21 bp):
TTATATTTTAATTTTAAAATA
Found at i:66507573 original size:37 final size:37
Alignment explanation
Indices: 66507512--66507603 Score: 121
Period size: 37 Copynumber: 2.5 Consensus size: 37
66507502 ATATGTAAGG
* * * *
66507512 TTACCAGTCCAGGCTGAACATTTAAAATGACAATGGA
1 TTACCAGTCCAGGCTAAACATTTAAAACGAAAACGGA
* *
66507549 TTACCAGTCCAAGCTAAACCTTTAAAACGAAAACGGA
1 TTACCAGTCCAGGCTAAACATTTAAAACGAAAACGGA
*
66507586 TTACCAGTTCAGGCTAAA
1 TTACCAGTCCAGGCTAAA
66507604 TCTGAGTCAC
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 47 1.00
ACGTcount: A:0.39, C:0.22, G:0.16, T:0.23
Consensus pattern (37 bp):
TTACCAGTCCAGGCTAAACATTTAAAACGAAAACGGA
Found at i:66508111 original size:200 final size:200
Alignment explanation
Indices: 66507768--66508167 Score: 728
Period size: 200 Copynumber: 2.0 Consensus size: 200
66507758 CAGTGTTAAA
* *
66507768 TATATATGTACATCATTAACAACATCTACTAATGAATTGTAACCAAAGATAACGTTACGAACTTA
1 TATATATATACATCATTAACAACATCTACTAATGAATTATAACCAAAGATAACGTTACGAACTTA
*
66507833 CTAAACAAAAACGGTTGCAAAAACAAGGCCAACGACTAATCTGATAATTTAGCTTTTCCATGATC
66 CCAAACAAAAACGGTTGCAAAAACAAGGCCAACGACTAATCTGATAATTTAGCTTTTCCATGATC
*
66507898 GAAGTCCAATTATTTCGTTTCTTGATCAATTAATATTTTTCATTCAATTAATCCACTTAAGCTTA
131 GAAGTCCAATTATTTCGTTCCTTGATCAATTAATATTTTTCATTCAATTAATCCACTTAAGCTTA
66507963 TAATC
196 TAATC
*
66507968 TATATATATATATCATTAACAACATCTACTAATGAATTATAACCAAAGATAACGTTACGAACTTA
1 TATATATATACATCATTAACAACATCTACTAATGAATTATAACCAAAGATAACGTTACGAACTTA
* *
66508033 CCAAACAAAAACGGTTGCAAAAACAAGGCCATCGACTAATCTGATAATTTGGCTTTTCCATGATC
66 CCAAACAAAAACGGTTGCAAAAACAAGGCCAACGACTAATCTGATAATTTAGCTTTTCCATGATC
*
66508098 GAAGTCCAATTATTTCGTTCCTTGATCAATTAATATTTTTCATTTAATTAATCCACTTAAGCTTA
131 GAAGTCCAATTATTTCGTTCCTTGATCAATTAATATTTTTCATTCAATTAATCCACTTAAGCTTA
66508163 TAATC
196 TAATC
66508168 CCTTTTAATA
Statistics
Matches: 192, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
200 192 1.00
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.34
Consensus pattern (200 bp):
TATATATATACATCATTAACAACATCTACTAATGAATTATAACCAAAGATAACGTTACGAACTTA
CCAAACAAAAACGGTTGCAAAAACAAGGCCAACGACTAATCTGATAATTTAGCTTTTCCATGATC
GAAGTCCAATTATTTCGTTCCTTGATCAATTAATATTTTTCATTCAATTAATCCACTTAAGCTTA
TAATC
Found at i:66509608 original size:43 final size:43
Alignment explanation
Indices: 66509526--66509617 Score: 121
Period size: 43 Copynumber: 2.1 Consensus size: 43
66509516 TGTGATTACA
* ** *
66509526 TGTAAGACCATGTCTAGGACATTTGCATTGTATTGTGATTATG
1 TGTAAGACCATGTCTAGGACATTGGCATCATATTATGATTATG
* * *
66509569 TGTAAGACCATGTCTGGGACATTGGCATCATTTTATGATTTTG
1 TGTAAGACCATGTCTAGGACATTGGCATCATATTATGATTATG
66509612 TGTAAG
1 TGTAAG
66509618 TGTGACAGCC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.25, C:0.12, G:0.24, T:0.39
Consensus pattern (43 bp):
TGTAAGACCATGTCTAGGACATTGGCATCATATTATGATTATG
Found at i:66511314 original size:39 final size:40
Alignment explanation
Indices: 66511110--66511332 Score: 245
Period size: 40 Copynumber: 5.6 Consensus size: 40
66511100 TTGAATGCTG
* * * * * *
66511110 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
* * * *
66511150 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
66511190 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
66511230 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
66511270 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
66511309 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
66511333 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 35 0.22
40 118 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:66511352 original size:79 final size:80
Alignment explanation
Indices: 66511185--66511367 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
66511175 GTGCGAGATA
* * *
66511185 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
66511250 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
66511265 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
66511329 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
66511344 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
66511368 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:66525266 original size:11 final size:11
Alignment explanation
Indices: 66525250--66525275 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
66525240 TGAATGCAAA
66525250 AAAATAAAAAT
1 AAAATAAAAAT
66525261 AAAATAAAAAT
1 AAAATAAAAAT
66525272 AAAA
1 AAAA
66525276 CCGTTTTCTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:66545720 original size:133 final size:131
Alignment explanation
Indices: 66545458--66545839 Score: 331
Period size: 133 Copynumber: 2.9 Consensus size: 131
66545448 TTTAAAAATT
* * * * *
66545458 CTTTAAAACGAAGGTAATGTTCGATATTTGGCAA-CTCACGAAATCGTGCCCTAACGTGCTGGGT
1 CTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTTGA-G-AATCGTGCCCTATCGTGCTGGGT
* * * ** *
66545522 TGCAATTTCTCGTTTGCTCAAGATAATCGAAAGTCTCTTTAGAATTTCGTTCATGATTTAAAAAA
64 TGCAATTTCTCATTTGCTCAAAACAATCGAAAGTCTCTTTAGAATTTCACTCACGATTT--AAAA
66545587 AAAAC
127 AAAAC
** *
66545592 CTTTAAAACGAAGGCGATATTCGATGTTTGGCAATTTGAGAATCGTGCCCTATCGTGCTGGGTTG
1 CTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTTGAGAATCGTGCCCTATCGTGCTGGGTTG
** * * * * * **
66545657 CGCTTTTTCATTTGTTCAAAACAATCGAAGATTC-CTTTAGAATTTTACTCACGTTTTCTAAAAA
66 CAATTTCTCATTTGCTCAAAACAATCGAA-AGTCTCTTTAGAATTTCACTCACGATTTAAAAAAA
*
66545721 CC
130 AC
* * ** * * *
66545723 CTTTAAAACGAAAGAAATGTTCGGTGTTTGGTGATTCGGGGAATAGTGCCCTATCGTGCTGGGTT
1 CTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATT-TGAGAATCGTGCCCTATCGTGCTGGGTT
* * * * * *
66545788 GCAATCTCCCGTTTGTTCAAAATAATCGAATA-TCTC-TTCGAAATTTCACTCA
65 GCAATTTCTCATTTGCTCAAAACAATCGAA-AGTCTCTTTAG-AATTTCACTCA
66545840 TGTTTTCTAA
Statistics
Matches: 200, Mismatches: 43, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
131 40 0.20
132 60 0.30
133 64 0.32
134 34 0.17
135 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.34
Consensus pattern (131 bp):
CTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTTGAGAATCGTGCCCTATCGTGCTGGGTTG
CAATTTCTCATTTGCTCAAAACAATCGAAAGTCTCTTTAGAATTTCACTCACGATTTAAAAAAAA
C
Found at i:66546768 original size:9 final size:9
Alignment explanation
Indices: 66546756--66546780 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
66546746 TGCAACTGAG
66546756 CTTTCAACT
1 CTTTCAACT
66546765 CTTTCAACT
1 CTTTCAACT
66546774 CTTTCAA
1 CTTTCAA
66546781 AGCCATTCTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.32, G:0.00, T:0.44
Consensus pattern (9 bp):
CTTTCAACT
Found at i:66552218 original size:46 final size:46
Alignment explanation
Indices: 66552151--66552320 Score: 189
Period size: 46 Copynumber: 3.7 Consensus size: 46
66552141 TGTAACCCGC
* * *
66552151 CCATAAGTGAACTCGAACTCAACTCAATGAGCTCGGCCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
* * * * *
66552197 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACG-TTCGCAT
* *** * *
66552243 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
66552290 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
66552321 TTCAGATGCC
Statistics
Matches: 98, Mismatches: 23, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
46 64 0.65
47 34 0.35
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
Found at i:66552266 original size:93 final size:93
Alignment explanation
Indices: 66552159--66552330 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
66552149 GCCCATAAGT
* * *
66552159 GAACTCGAACTCAACTCAATGAGCTCGGCCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
66552224 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCAGATGCCTAGTTACATCTCTC
* * *
66552252 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
66552317 CGAGTTCAGATGCC
66 CGAGCTCAGATGCC
66552331 CAAACATCCT
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCAGATGCCTAGTTACATCTCTC
Found at i:66552345 original size:46 final size:46
Alignment explanation
Indices: 66552202--66552345 Score: 116
Period size: 46 Copynumber: 3.1 Consensus size: 46
66552192 CGCATCCATA
* * * *
66552202 AGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCCA--TACATC-CT
* * * * * *
66552251 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTC--AGATGCCCATACATCCT
*
66552295 AGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCCAAACATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCCATACATCCT
66552341 AGTGA
1 AGTGA
66552346 CATGTCACTT
Statistics
Matches: 72, Mismatches: 17, Indels: 15
0.69 0.16 0.14
Matches are distributed among these distances:
44 9 0.12
46 31 0.43
47 28 0.39
49 4 0.06
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCCATACATCCT
Found at i:66559838 original size:27 final size:27
Alignment explanation
Indices: 66559808--66559985 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
66559798 ATATTGAGCC
* * * *
66559808 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
66559835 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
66559862 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
66559890 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
66559917 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
66559944 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
66559971 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
66559986 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:66559947 original size:82 final size:81
Alignment explanation
Indices: 66559829--66559984 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
66559819 TGCTATATAA
* *
66559829 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
66559894 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
66559911 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
66559975 CACTTAGTGC
65 CACTTAGTGC
66559985 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:66562171 original size:15 final size:15
Alignment explanation
Indices: 66562151--66562184 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
66562141 AGCGTATACA
*
66562151 CACAACCAATTCAAC
1 CACAACCAAGTCAAC
*
66562166 CACAACCAAGTCATC
1 CACAACCAAGTCAAC
66562181 CACA
1 CACA
66562185 CATCAATTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.44, C:0.41, G:0.03, T:0.12
Consensus pattern (15 bp):
CACAACCAAGTCAAC
Found at i:66562803 original size:20 final size:20
Alignment explanation
Indices: 66562780--66562817 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
66562770 CTTGCAACTC
66562780 ACCATAATCTTTCACAACAT
1 ACCATAATCTTTCACAACAT
* *
66562800 ACCATAGTCTTTCCCAAC
1 ACCATAATCTTTCACAAC
66562818 TTTAACATTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.34, G:0.03, T:0.29
Consensus pattern (20 bp):
ACCATAATCTTTCACAACAT
Found at i:66562981 original size:43 final size:42
Alignment explanation
Indices: 66562903--66563024 Score: 145
Period size: 43 Copynumber: 2.9 Consensus size: 42
66562893 TACCATACCA
* **
66562903 ATGCCATATCCCAGATATGGTCTTACATGGGATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* * * *
66562945 ATGCCAATAGCCCAGCTATGGTCTTACACAAAATCTCATATTG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* * *
66562988 ATGCTATATCCTAGATATGGTCTTACACGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCA
66563025 ACTAACCTTA
Statistics
Matches: 66, Mismatches: 13, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
42 32 0.48
43 34 0.52
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
Found at i:66570051 original size:27 final size:27
Alignment explanation
Indices: 66570021--66570097 Score: 67
Period size: 27 Copynumber: 3.1 Consensus size: 27
66570011 GATACATTGA
66570021 TTTGGCTTCGGGCCATGATATCGGCAC
1 TTTGGCTTCGGGCCATGATATCGGCAC
* * * * *
66570048 TTTGGGTGCGAG-CTTCAT-T--G-A-
1 TTTGGCTTCGGGCCATGATATCGGCAC
66570069 TTTGGCTTCGGGCCATGATATCGGCAC
1 TTTGGCTTCGGGCCATGATATCGGCAC
66570096 TT
1 TT
66570098 CAGGTGCGAG
Statistics
Matches: 34, Mismatches: 10, Indels: 12
0.61 0.18 0.21
Matches are distributed among these distances:
21 9 0.26
22 5 0.15
23 2 0.06
25 2 0.06
26 5 0.15
27 11 0.32
ACGTcount: A:0.14, C:0.22, G:0.30, T:0.34
Consensus pattern (27 bp):
TTTGGCTTCGGGCCATGATATCGGCAC
Found at i:66570086 original size:48 final size:48
Alignment explanation
Indices: 66570015--66570185 Score: 261
Period size: 48 Copynumber: 3.6 Consensus size: 48
66570005 TTAGGGGATA
*
66570015 CATTGATTTGGCTTCGGGCCATGATATCGGCACTTTGGGTGCGAGCTT
1 CATTGATTTGGCTTCGGGCCATGATATCGGCACTTCGGGTGCGAGCTT
*
66570063 CATTGATTTGGCTTCGGGCCATGATATCGGCACTTCAGGTGCGAGCTT
1 CATTGATTTGGCTTCGGGCCATGATATCGGCACTTCGGGTGCGAGCTT
* ** ***
66570111 CATTGATTTGGCTTCGGGCCATGAGATTAGCACTTCGGGTGCGAGAGA
1 CATTGATTTGGCTTCGGGCCATGATATCGGCACTTCGGGTGCGAGCTT
*
66570159 CATTGAGTTGGCTTCGGGCCATGATAT
1 CATTGATTTGGCTTCGGGCCATGATAT
66570186 TAGCACTTAG
Statistics
Matches: 112, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 112 1.00
ACGTcount: A:0.18, C:0.20, G:0.31, T:0.31
Consensus pattern (48 bp):
CATTGATTTGGCTTCGGGCCATGATATCGGCACTTCGGGTGCGAGCTT
Found at i:66571715 original size:37 final size:37
Alignment explanation
Indices: 66571665--66571740 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
66571655 TAATGCTCCA
66571665 TAACCCTATTTCGACATTGAATACGAGTGAGAGGTGT
1 TAACCCTATTTCGACATTGAATACGAGTGAGAGGTGT
66571702 TAACCCTATTTCGACATTGAATACGAGTGAGAGGTGT
1 TAACCCTATTTCGACATTGAATACGAGTGAGAGGTGT
66571739 TA
1 TA
66571741 CATTATGTCT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (37 bp):
TAACCCTATTTCGACATTGAATACGAGTGAGAGGTGT
Found at i:66572603 original size:22 final size:22
Alignment explanation
Indices: 66572578--66572623 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
66572568 GTAAAGTTAC
*
66572578 TTTGTTATGGTATGAATCTAAA
1 TTTGTTATGGTACGAATCTAAA
66572600 TTTGTTATGGTACGAATCTAAA
1 TTTGTTATGGTACGAATCTAAA
66572622 TT
1 TT
66572624 GGTAAGGTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.30, C:0.07, G:0.17, T:0.46
Consensus pattern (22 bp):
TTTGTTATGGTACGAATCTAAA
Found at i:66574148 original size:40 final size:39
Alignment explanation
Indices: 66574084--66574213 Score: 152
Period size: 40 Copynumber: 3.3 Consensus size: 39
66574074 TAGATAACAC
* * **
66574084 CGACACAAAGCCTGTTAGGCACAAAGCCCAATAAATACA
1 CGACACAAAACCTGCTAGGCACAAAGCCTGATAAATACA
* * *
66574123 TCGACACAAAACTTGCTAGGAACAAAGCCTGATAAACACA
1 -CGACACAAAACCTGCTAGGCACAAAGCCTGATAAATACA
* *
66574163 CTGGCACAAAGCCTGCTAGGCACAAAGCCTGATAAATACA
1 C-GACACAAAACCTGCTAGGCACAAAGCCTGATAAATACA
66574203 CCGACACAAAA
1 -CGACACAAAA
66574214 GCCTAATAGA
Statistics
Matches: 74, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
39 1 0.01
40 72 0.97
41 1 0.01
ACGTcount: A:0.43, C:0.28, G:0.16, T:0.13
Consensus pattern (39 bp):
CGACACAAAACCTGCTAGGCACAAAGCCTGATAAATACA
Found at i:66603809 original size:47 final size:47
Alignment explanation
Indices: 66603753--66603897 Score: 254
Period size: 47 Copynumber: 3.1 Consensus size: 47
66603743 TAAGTTGAAT
66603753 TTAAGCTTGTTAAATTTGTTCTTAATAATTCCGGATAAGTTACTTAG
1 TTAAGCTTGTTAAATTTGTTCTTAATAATTCCGGATAAGTTACTTAG
66603800 TTAAGCTTGTTAAATTTGTTCTTAATAATTCCGGATAAGTTACTTAG
1 TTAAGCTTGTTAAATTTGTTCTTAATAATTCCGGATAAGTTACTTAG
** * *
66603847 TTAAGCTTGTTAAATTTGCCCTTAATATTTTCGGATAAGTTACTTAG
1 TTAAGCTTGTTAAATTTGTTCTTAATAATTCCGGATAAGTTACTTAG
66603894 TTAA
1 TTAA
66603898 AGAAAATTTT
Statistics
Matches: 94, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 94 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.45
Consensus pattern (47 bp):
TTAAGCTTGTTAAATTTGTTCTTAATAATTCCGGATAAGTTACTTAG
Found at i:66604745 original size:45 final size:45
Alignment explanation
Indices: 66604675--66604894 Score: 270
Period size: 45 Copynumber: 5.0 Consensus size: 45
66604665 TATCGTACAG
* *
66604675 TACTATTTAGGCCTTTAAGCCTAGCAGGCTATAATGCCGGTGATA
1 TACTATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGATA
* *
66604720 TACTATTTAGGCCTTTGAGCTTAGCAGGCTATAATGCCGGTGATA
1 TACTATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGATA
* * *
66604765 TACTATTCGGGCCTTTGAGCCTAGCAAGCTATAATGCCAGTGATA
1 TACTATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGATA
* * * * *
66604810 TACTATTCGGGCCTTCGAGCCTAGTAGGCTATAATGCCAGTGAAA
1 TACTATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGATA
*
66604855 TGA-TA-TC-GAG-CTTTGAGCCTAGCAGGCGA-AATGCCGGTGA
1 T-ACTATTCAG-GCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
66604895 ATGAATTCGG
Statistics
Matches: 158, Mismatches: 15, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
42 10 0.06
43 17 0.11
44 3 0.02
45 127 0.80
46 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (45 bp):
TACTATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGATA
Found at i:66606745 original size:53 final size:51
Alignment explanation
Indices: 66606676--66606869 Score: 194
Period size: 53 Copynumber: 3.7 Consensus size: 51
66606666 CCCCAGTTTA
* *
66606676 TAAAATTATTGAAATACCTTCGATTTGTAAAATTATCGAAATACTGTCGATTG
1 TAAAATTATTAAAATACCCTCGATTTGTAAAATTA-CGAAATAC-GTCGATTG
*
66606729 TAAAATTATTAAAATACCCTCGATTTGTAAAATTACCG-AATACGCTCAGTTTG
1 TAAAATTATTAAAATACCCTCGATTTGTAAAATTA-CGAAATACG-TC-GATTG
* * **
66606782 CAAAATTACTAAAATACCCTCGATTTGTAAAATTACTGAAATACCCACGACTTG
1 TAAAATTATTAAAATACCCTCGATTTGTAAAATTAC-GAAATA-CGTCGA-TTG
** * * *
66606836 TAAAATTACCAAAGTACCC-CGATTTATAGAATTA
1 TAAAATTATTAAAATACCCTCGATTTGTAAAATTA
66606870 TTGTTTTACC
Statistics
Matches: 121, Mismatches: 14, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
51 1 0.01
52 8 0.07
53 87 0.72
54 24 0.20
55 1 0.01
ACGTcount: A:0.40, C:0.17, G:0.11, T:0.32
Consensus pattern (51 bp):
TAAAATTATTAAAATACCCTCGATTTGTAAAATTACGAAATACGTCGATTG
Found at i:66606836 original size:27 final size:27
Alignment explanation
Indices: 66606646--66606934 Score: 200
Period size: 27 Copynumber: 10.8 Consensus size: 27
66606636 AATACCCAGG
* *
66606646 TTGTAAAATTAC-CAAAGTACCC-CCAGT
1 TTGTAAAATTACTGAAA-TACCCTCGA-T
* * *
66606673 TTATAAAATTATTGAAATACCTTCGAT
1 TTGTAAAATTACTGAAATACCCTCGAT
**
66606700 TTGTAAAATTA-TCGAAATACTGTCGA-
1 TTGTAAAATTACT-GAAATACCCTCGAT
* *
66606726 TTGTAAAATTATTAAAATACCCTCGAT
1 TTGTAAAATTACTGAAATACCCTCGAT
* *
66606753 TTGTAAAATTACCG-AATACGCTC-AGT
1 TTGTAAAATTACTGAAATACCCTCGA-T
* *
66606779 TTGCAAAATTACTAAAATACCCTCGAT
1 TTGTAAAATTACTGAAATACCCTCGAT
* *
66606806 TTGTAAAATTACTGAAATACCCACGAC
1 TTGTAAAATTACTGAAATACCCTCGAT
*
66606833 TTGTAAAATTAC-CAAAGTACCC-CGAT
1 TTGTAAAATTACTGAAA-TACCCTCGAT
* * * ***
66606859 TTATAGAATTATTGTTTTACCCTCGAT
1 TTGTAAAATTACTGAAATACCCTCGAT
** * *
66606886 TTACAAAATTATTGAAATACCC-CTAT
1 TTGTAAAATTACTGAAATACCCTCGAT
** *
66606912 AGGGTAAAATTACCGAAATACCC
1 -TTGTAAAATTACTGAAATACCC
66606935 CTGTAGGATA
Statistics
Matches: 206, Mismatches: 44, Indels: 24
0.75 0.16 0.09
Matches are distributed among these distances:
25 1 0.00
26 65 0.32
27 134 0.65
28 6 0.03
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.32
Consensus pattern (27 bp):
TTGTAAAATTACTGAAATACCCTCGAT
Found at i:66606869 original size:80 final size:80
Alignment explanation
Indices: 66606722--66606907 Score: 189
Period size: 80 Copynumber: 2.3 Consensus size: 80
66606712 CGAAATACTG
* * * * * *
66606722 TCGA-TTGTAAAATTATTAAAATACCCTCGATTTGTAAAATTACCGAATACGCTCAGTTTGCAAA
1 TCGATTTGTAAAATTATTGAAATACCCACGACTTGTAAAATTACCAAATACGCCCAGTTTACAAA
66606786 ATTACTAAAATACCC
66 ATTACTAAAATACCC
* *
66606801 TCGATTTGTAAAATTACTGAAATACCCACGACTTGTAAAATTACCAAAGTAC-CCC-GATTTATA
1 TCGATTTGTAAAATTATTGAAATACCCACGACTTGTAAAATTACCAAA-TACGCCCAG-TTTACA
* * ****
66606864 GAATTATTGTTTTACCC
64 AAATTACTAAAATACCC
**
66606881 TCGATTTACAAAATTATTGAAATACCC
1 TCGATTTGTAAAATTATTGAAATACCC
66606908 CTATAGGGTA
Statistics
Matches: 87, Mismatches: 17, Indels: 5
0.80 0.16 0.05
Matches are distributed among these distances:
79 5 0.06
80 79 0.91
81 3 0.03
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (80 bp):
TCGATTTGTAAAATTATTGAAATACCCACGACTTGTAAAATTACCAAATACGCCCAGTTTACAAA
ATTACTAAAATACCC
Found at i:66606935 original size:27 final size:27
Alignment explanation
Indices: 66606890--66607290 Score: 377
Period size: 27 Copynumber: 14.9 Consensus size: 27
66606880 CTCGATTTAC
** *
66606890 AAAATTATTGAAATACCCCTATAGGGT
1 AAAATTACCGAAATACCCCTGTAGGGT
*
66606917 AAAATTACCGAAATACCCCTGTAGGAT
1 AAAATTACCGAAATACCCCTGTAGGGT
* * * *
66606944 AGAATTATCGAAATACCCTTGTAGGAT
1 AAAATTACCGAAATACCCCTGTAGGGT
66606971 AGAAA-TACCGAAATACCCCTGTAGGGT
1 A-AAATTACCGAAATACCCCTGTAGGGT
* *
66606998 AAAATTACTGAAATACCCCTGTAGGAT
1 AAAATTACCGAAATACCCCTGTAGGGT
* * *
66607025 AGAATTACCGAAATACCCTTGTAGGAT
1 AAAATTACCGAAATACCCCTGTAGGGT
*
66607052 AGAAA-TACCGAAATACCCTTGTAGGGT
1 A-AAATTACCGAAATACCCCTGTAGGGT
* *
66607079 AGAAA-TACTGAAATACCCTTGTAGGGT
1 A-AAATTACCGAAATACCCCTGTAGGGT
*
66607106 AGAATTA-CGAAAATACCCCTGTAGGGT
1 AAAATTACCG-AAATACCCCTGTAGGGT
* **
66607133 AGAATTACCGAAATACCATTGTAGGGT
1 AAAATTACCGAAATACCCCTGTAGGGT
* *
66607160 AGAAA-TACCGAAATACTCTTGTAGGGT
1 A-AAATTACCGAAATACCCCTGTAGGGT
*
66607187 AGAAA-TA-TGAAAATACCCCTGTAGGGT
1 A-AAATTACCG-AAATACCCCTGTAGGGT
* ** * *
66607214 AGAATTACTAAAATACCCCTATAGGAT
1 AAAATTACCGAAATACCCCTGTAGGGT
* * * *
66607241 AGAGTTATCGAAATACCCTTGTAGGGT
1 AAAATTACCGAAATACCCCTGTAGGGT
*
66607268 AGAAA-TACCGAAATACCCTTGTA
1 A-AAATTACCGAAATACCCCTGTA
66607291 AAAATACCCT
Statistics
Matches: 319, Mismatches: 44, Indels: 22
0.83 0.11 0.06
Matches are distributed among these distances:
26 9 0.03
27 300 0.94
28 10 0.03
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.25
Consensus pattern (27 bp):
AAAATTACCGAAATACCCCTGTAGGGT
Found at i:66606950 original size:54 final size:54
Alignment explanation
Indices: 66606899--66607290 Score: 425
Period size: 54 Copynumber: 7.3 Consensus size: 54
66606889 CAAAATTATT
* * * *
66606899 GAAATACCCCTATAGGGTAAAATTACCGAAATACCCCTGTAGGATAGAATTATC
1 GAAATACCCCTGTAGGGTAAAATTACCGAAATACCCTTGTAGGGTAGAATTACC
* * * * *
66606953 GAAATACCCTTGTAGGATAGAAA-TACCGAAATACCCCTGTAGGGTAAAATTACT
1 GAAATACCCCTGTAGGGTA-AAATTACCGAAATACCCTTGTAGGGTAGAATTACC
* * * *
66607007 GAAATACCCCTGTAGGATAGAATTACCGAAATACCCTTGTAGGATAGAAATACC
1 GAAATACCCCTGTAGGGTAAAATTACCGAAATACCCTTGTAGGGTAGAATTACC
* *
66607061 GAAATACCCTTGTAGGGTAGAAA-TACTGAAATACCCTTGTAGGGTAGAATTA-C
1 GAAATACCCCTGTAGGGTA-AAATTACCGAAATACCCTTGTAGGGTAGAATTACC
* * *
66607114 GAAAATACCCCTGTAGGGTAGAATTACCGAAATACCATTGTAGGGTAGAAATACC
1 G-AAATACCCCTGTAGGGTAAAATTACCGAAATACCCTTGTAGGGTAGAATTACC
* * * * *
66607169 GAAATACTCTTGTAGGGTAGAAA-TA-TGAAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTA-AAATTACCG-AAATACCCTTGTAGGGTAGAATTACC
* * * * * * *
66607223 AAAATACCCCTATAGGATAGAGTTATCGAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAAAATTACCGAAATACCCTTGTAGGGTAGAATTACC
*
66607277 GAAATACCCTTGTA
1 GAAATACCCCTGTA
66607291 AAAATACCCT
Statistics
Matches: 281, Mismatches: 47, Indels: 20
0.81 0.14 0.06
Matches are distributed among these distances:
53 8 0.03
54 263 0.94
55 10 0.04
ACGTcount: A:0.38, C:0.18, G:0.20, T:0.24
Consensus pattern (54 bp):
GAAATACCCCTGTAGGGTAAAATTACCGAAATACCCTTGTAGGGTAGAATTACC
Found at i:66606987 original size:81 final size:81
Alignment explanation
Indices: 66606899--66607290 Score: 468
Period size: 81 Copynumber: 4.8 Consensus size: 81
66606889 CAAAATTATT
* * * *
66606899 GAAATACCCCTATAGGGTAAAATTACCGAAATACCCCTGTAGGATAGAATTATCGAAATACCCTT
1 GAAATACCCCTGTAGGGTAAAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTT
66606964 GTAGGATAGAAATACC
66 GTAGGATAGAAATACC
* * *
66606980 GAAATACCCCTGTAGGGTAAAATTACTGAAATACCCCTGTAGGATAGAATTACCGAAATACCCTT
1 GAAATACCCCTGTAGGGTAAAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTT
66607045 GTAGGATAGAAATACC
66 GTAGGATAGAAATACC
* *
66607061 GAAATACCCTTGTAGGGTAGAAA-TACTGAAATACCCTTGTAGGGTAGAATTA-CGAAAATACCC
1 GAAATACCCCTGTAGGGTA-AAATTACCGAAATACCCTTGTAGGGTAGAATTACCG-AAATACCC
* * *
66607124 CTGTAGGGTAGAATTACC
64 TTGTAGGATAGAAATACC
** * * *
66607142 GAAATACCATTGTAGGGTAGAAA-TACCGAAATACTCTTGTAGGGTAGAAATA-TGAAAATACCC
1 GAAATACCCCTGTAGGGTA-AAATTACCGAAATACCCTTGTAGGGTAGAATTACCG-AAATACCC
* * * *
66607205 CTGTAGGGTAGAATTACT
64 TTGTAGGATAGAAATACC
* * * * * * *
66607223 AAAATACCCCTATAGGATAGAGTTATCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCTT
1 GAAATACCCCTGTAGGGTAAAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTT
66607288 GTA
66 GTA
66607291 AAAATACCCT
Statistics
Matches: 281, Mismatches: 26, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
80 3 0.01
81 274 0.98
82 4 0.01
ACGTcount: A:0.38, C:0.18, G:0.20, T:0.24
Consensus pattern (81 bp):
GAAATACCCCTGTAGGGTAAAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTT
GTAGGATAGAAATACC
Found at i:66607016 original size:108 final size:108
Alignment explanation
Indices: 66606890--66607290 Score: 581
Period size: 108 Copynumber: 3.7 Consensus size: 108
66606880 CTCGATTTAC
* * * * * *
66606890 AAAATTATTGAAATACCCCTATAGGGTAAAATTACCGAAATACCCCTGTAGGATAGAATTATCGA
1 AAAATTACTGAAATACCCCTATAGGATAGAATTACCGAAATACCCTTGTAGGATAGAAATACCGA
* *
66606955 AATACCCTTGTAGGATAGAAATACCGAAATACCCCTGTAGGGT
66 AATACCCTTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGT
*
66606998 AAAATTACTGAAATACCCCTGTAGGATAGAATTACCGAAATACCCTTGTAGGATAGAAATACCGA
1 AAAATTACTGAAATACCCCTATAGGATAGAATTACCGAAATACCCTTGTAGGATAGAAATACCGA
*
66607063 AATACCCTTGTAGGGTAGAAATACTGAAATACCCTTGTAGGGT
66 AATACCCTTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGT
* * * * *
66607106 AGAATTAC-GAAAATACCCCTGTAGGGTAGAATTACCGAAATACCATTGTAGGGTAGAAATACCG
1 AAAATTACTG-AAATACCCCTATAGGATAGAATTACCGAAATACCCTTGTAGGATAGAAATACCG
*
66607170 AAATACTCTTGTAGGGTAGAAATA-TGAAAATACCCCTGTAGGGT
65 AAATACCCTTGTAGGGTAGAAATACTG-AAATACCCCTGTAGGGT
* * * * *
66607214 AGAATTACTAAAATACCCCTATAGGATAGAGTTATCGAAATACCCTTGTAGGGTAGAAATACCGA
1 AAAATTACTGAAATACCCCTATAGGATAGAATTACCGAAATACCCTTGTAGGATAGAAATACCGA
66607279 AATACCCTTGTA
66 AATACCCTTGTA
66607291 AAAATACCCT
Statistics
Matches: 267, Mismatches: 23, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
107 3 0.01
108 264 0.99
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.25
Consensus pattern (108 bp):
AAAATTACTGAAATACCCCTATAGGATAGAATTACCGAAATACCCTTGTAGGATAGAAATACCGA
AATACCCTTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGT
Found at i:66607297 original size:14 final size:14
Alignment explanation
Indices: 66607278--66607304 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
66607268 AGAAATACCG
66607278 AAATACCCTTGTAA
1 AAATACCCTTGTAA
66607292 AAATACCCTTGTA
1 AAATACCCTTGTA
66607305 GGGTAGGATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.30
Consensus pattern (14 bp):
AAATACCCTTGTAA
Found at i:66607308 original size:41 final size:41
Alignment explanation
Indices: 66607251--66607330 Score: 126
Period size: 41 Copynumber: 2.0 Consensus size: 41
66607241 AGAGTTATCG
66607251 AAATACCCTTGTAGGGTAGAAATACCGAA-ATACCCTTGTAA
1 AAATACCCTTGTAGGGTAGAAATACC-AAGATACCCTTGTAA
* *
66607292 AAATACCCTTGTAGGGTAGGATTACCAAGATACCCTTGT
1 AAATACCCTTGTAGGGTAGAAATACCAAGATACCCTTGT
66607331 GGGGTAAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
40 2 0.06
41 34 0.94
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (41 bp):
AAATACCCTTGTAGGGTAGAAATACCAAGATACCCTTGTAA
Found at i:66607335 original size:27 final size:27
Alignment explanation
Indices: 66607294--66607345 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
66607284 CCTTGTAAAA
**
66607294 ATACCCTTGTAGGGTAGGATTACCAAG
1 ATACCCTTGTAGGGTAAAATTACCAAG
*
66607321 ATACCCTTGTGGGGTAAAATTACCA
1 ATACCCTTGTAGGGTAAAATTACCA
66607346 TTTTGCCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (27 bp):
ATACCCTTGTAGGGTAAAATTACCAAG
Found at i:66607806 original size:22 final size:22
Alignment explanation
Indices: 66607754--66607818 Score: 80
Period size: 22 Copynumber: 3.0 Consensus size: 22
66607744 TTTAAGCCTT
*
66607754 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTTTGTGCCAAC
*
66607776 CT-ACATATGGCTTTGTGCCAAC
1 CTGA-TTATGGCTTTGTGCCAAC
66607798 CTGATTATGG-TTGTGTGCCAA
1 CTGATTATGGCTT-TGTGCCAA
66607819 ACGTATTTGC
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
21 3 0.08
22 33 0.89
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTTTGTGCCAAC
Found at i:66608007 original size:27 final size:26
Alignment explanation
Indices: 66607977--66608084 Score: 135
Period size: 27 Copynumber: 4.0 Consensus size: 26
66607967 ATTCTGTTAA
* *
66607977 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTG-TTCTG
*
66608004 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCAC-AATATCTGTTCTG
*
66608031 GTGGCTCTGCCACAATAGCTGTATCTG
1 GTGGCTCTGCCACAATATCTGT-TCTG
* *
66608058 GTGACTCTGTCACAATATCTGTTCTG
1 GTGGCTCTGCCACAATATCTGTTCTG
66608084 G
1 G
66608085 CAGCCATGTT
Statistics
Matches: 72, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 13 0.18
27 52 0.72
28 7 0.10
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTGTTCTG
Found at i:66608241 original size:6 final size:6
Alignment explanation
Indices: 66608202--66608289 Score: 56
Period size: 6 Copynumber: 14.3 Consensus size: 6
66608192 TTGCATTCAC
* * *
66608202 ATTCTG ACTCTG ATTCT- ATTATCTG ATACTG ATTCTG ATTCTG -TCACTTG
1 ATTCTG ATTCTG ATTCTG A-T-TCTG ATTCTG ATTCTG ATTCTG AT-TC-TG
* * *
66608252 ATTCTG CTTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
66608290 AATGTTTCTT
Statistics
Matches: 62, Mismatches: 12, Indels: 16
0.69 0.13 0.18
Matches are distributed among these distances:
5 3 0.05
6 49 0.79
7 8 0.13
8 2 0.03
ACGTcount: A:0.18, C:0.19, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:66610326 original size:27 final size:27
Alignment explanation
Indices: 66610246--66610474 Score: 172
Period size: 27 Copynumber: 8.7 Consensus size: 27
66610236 TTAGTTTACC
*
66610246 AAATTACTGAAATACCC-C-AGTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
66610271 AAATTAC-CAAAGTACCC-CGATTTATA
1 AAATTACTGAAA-TACCCTCGATTTGTA
*
66610297 AAATTATTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
66610324 AAATTA-TCG-AATACGCT-TAGTTTGCA
1 AAATTACT-GAAATACCCTCGA-TTTGTA
*
66610350 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
66610377 AAATTACTAAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
66610404 AAATTAC-CAAAGTACCCCCGATTTATA
1 AAATTACTGAAA-TACCCTCGATTTGTA
* * **
66610431 GAATTACCG-TTTACCCTCGATTTAG-A
1 AAATTACTGAAATACCCTCGATTT-GTA
* *
66610457 AAATTATTAAAATACCCT
1 AAATTACTGAAATACCCT
66610475 GTAGGGTAGA
Statistics
Matches: 161, Mismatches: 30, Indels: 24
0.75 0.14 0.11
Matches are distributed among these distances:
24 3 0.02
25 14 0.09
26 55 0.34
27 88 0.55
28 1 0.01
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:66610473 original size:53 final size:53
Alignment explanation
Indices: 66610246--66610474 Score: 189
Period size: 53 Copynumber: 4.3 Consensus size: 53
66610236 TTAGTTTACC
* * * **
66610246 AAATTACTGAAATACCC-C-AGTTGTAAAATTACCAAAGTACCC-CGATTTATA
1 AAATTACTAAAATACCCTCGATTTGTAAAATTACCGAA-TACCCTCGATTTGCA
* * * * *
66610297 AAATTATTGAAATACCCTCGATTTGTAAAATTATCGAATACGCT-TAGTTTGCA
1 AAATTACTAAAATACCCTCGATTTGTAAAATTACCGAATACCCTCGA-TTTGCA
** * *
66610350 AAATTACTAAAATACCCTCGATTTGTAAAATTACTAAAATACCCTCGACTTGTA
1 AAATTACTAAAATACCCTCGATTTGTAAAATTAC-CGAATACCCTCGATTTGCA
* * * * * **
66610404 AAATTACCAAAGTACCCCCGATTTATAGAATTACCGTTTACCCTCGATTTAG-A
1 AAATTACTAAAATACCCTCGATTTGTAAAATTACCGAATACCCTCGATTT-GCA
*
66610457 AAATTATTAAAATACCCT
1 AAATTACTAAAATACCCT
66610475 GTAGGGTAGA
Statistics
Matches: 140, Mismatches: 31, Indels: 12
0.77 0.17 0.07
Matches are distributed among these distances:
51 16 0.11
52 6 0.04
53 76 0.54
54 41 0.29
55 1 0.01
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (53 bp):
AAATTACTAAAATACCCTCGATTTGTAAAATTACCGAATACCCTCGATTTGCA
Found at i:66610509 original size:27 final size:27
Alignment explanation
Indices: 66610466--66610787 Score: 387
Period size: 27 Copynumber: 12.0 Consensus size: 27
66610456 AAAATTATTA
**
66610466 AAATACCC-TGTAGGGTAGAATTATTG
1 AAATACCCTTGTAGGGTAGAATTACCG
*
66610492 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
66610519 AAATACCCTTGTAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* *
66610546 AAATACCCTTGTAGGGTAGAAATACCT
1 AAATACCCTTGTAGGGTAGAATTACCG
* * * *
66610573 AAATACCCCTGTGGGGTAGATTTACTG
1 AAATACCCTTGTAGGGTAGAATTACCG
* * *
66610600 AAATACTCTTGTAGGGTAGAAATAACG
1 AAATACCCTTGTAGGGTAGAATTACCG
*
66610627 AAATACCCTTGTAGGGTAGAACTACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
**
66610654 AAATACCCTTGTAGGGTAGAATTACTA
1 AAATACCCTTGTAGGGTAGAATTACCG
* * * *
66610681 AAATACCCCTGTAGGATAGAATTATCA
1 AAATACCCTTGTAGGGTAGAATTACCG
* *
66610708 AAATACCATTGTAGGGTAGAAATACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* *
66610735 AAATACCCCTATAGGGTAGAATTACC-
1 AAATACCCTTGTAGGGTAGAATTACCG
* * *
66610761 ATGATACCCTTGTGGGGTAAAATTACC
1 A-AATACCCTTGTAGGGTAGAATTACC
66610788 ATTTTGCTCT
Statistics
Matches: 251, Mismatches: 43, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
26 9 0.04
27 242 0.96
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (27 bp):
AAATACCCTTGTAGGGTAGAATTACCG
Found at i:66611266 original size:22 final size:22
Alignment explanation
Indices: 66611214--66611278 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
66611204 TTTAAGCCTT
* *
66611214 CTAATTATGGCTTTGCGCCAAC
1 CTAATTATGGCTCTGTGCCAAC
66611236 CTACA-TATGGCTCTGTGCCAAC
1 CTA-ATTATGGCTCTGTGCCAAC
* *
66611258 CTAATTATGGTTGTGTGCCAA
1 CTAATTATGGCTCTGTGCCAA
66611279 ACGTATTTGC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 1 0.03
22 35 0.95
23 1 0.03
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.32
Consensus pattern (22 bp):
CTAATTATGGCTCTGTGCCAAC
Found at i:66611466 original size:27 final size:26
Alignment explanation
Indices: 66611429--66611542 Score: 104
Period size: 27 Copynumber: 4.3 Consensus size: 26
66611419 TGCCACGTAT
* *
66611429 TCTGTTC-AGTGGCTTTGCCACATTA
1 TCTGTTCTAGTGGCTATGCCACAATA
66611454 TCTGTTTCTAGTGGCTATGCCACAAATA
1 TCTG-TTCTAGTGGCTATGCCAC-AATA
* * *
66611482 TCTGTTCTGGTGGCTCTGCTACAATA
1 TCTGTTCTAGTGGCTATGCCACAATA
* * * *
66611508 TCTGTATCTGGTGACTCTGTCACAATA
1 TCTGT-TCTAGTGGCTATGCCACAATA
*
66611535 TCTATTCT
1 TCTGTTCT
66611543 GGCAGCCATG
Statistics
Matches: 76, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
25 4 0.05
26 15 0.20
27 50 0.66
28 7 0.09
ACGTcount: A:0.19, C:0.23, G:0.18, T:0.39
Consensus pattern (26 bp):
TCTGTTCTAGTGGCTATGCCACAATA
Found at i:66611510 original size:54 final size:53
Alignment explanation
Indices: 66611429--66611544 Score: 126
Period size: 54 Copynumber: 2.2 Consensus size: 53
66611419 TGCCACGTAT
* * * * *
66611429 TCTGTTC-AGTGGCTTTGCCACATTATCTGTTTCTAGTGGCTATGCCACAAATA
1 TCTGTTCTGGTGGCTCTGCCACAATATCTGTATCTAGTGACTATGCCAC-AATA
* * * *
66611482 TCTGTTCTGGTGGCTCTGCTACAATATCTGTATCTGGTGACTCTGTCACAATA
1 TCTGTTCTGGTGGCTCTGCCACAATATCTGTATCTAGTGACTATGCCACAATA
*
66611535 TCTATTCTGG
1 TCTGTTCTGG
66611545 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
53 20 0.38
54 32 0.62
ACGTcount: A:0.19, C:0.22, G:0.20, T:0.39
Consensus pattern (53 bp):
TCTGTTCTGGTGGCTCTGCCACAATATCTGTATCTAGTGACTATGCCACAATA
Found at i:66623291 original size:43 final size:43
Alignment explanation
Indices: 66623243--66623340 Score: 142
Period size: 43 Copynumber: 2.3 Consensus size: 43
66623233 ATTACTCCTG
* **
66623243 CTAGGCTTGAAGCCCGATATTAACTCATTGGCATTATAGCCTA
1 CTAGGCTTGAAGCCCGATATTAAATCACCGGCATTATAGCCTA
* *
66623286 CTAGGCTTAAAGCCCGATATTAAATCACCGGCATTATAGCCTG
1 CTAGGCTTGAAGCCCGATATTAAATCACCGGCATTATAGCCTA
*
66623329 CTAGGCTCGAAG
1 CTAGGCTTGAAG
66623341 GCCTGAATAG
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 48 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (43 bp):
CTAGGCTTGAAGCCCGATATTAAATCACCGGCATTATAGCCTA
Found at i:66633956 original size:40 final size:40
Alignment explanation
Indices: 66633774--66633996 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
66633764 TCCTCGTTCA
* * * * *
66633774 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
66633813 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
66633853 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
66633893 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
66633933 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
66633973 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
66633997 CAACATTCAA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 115 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:66634005 original size:41 final size:41
Alignment explanation
Indices: 66633928--66634005 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
66633918 TTAGTATCTC
* * *
66633928 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGAAACATTCACTTA
66633969 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAACATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGA-AACATTCA
66634006 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 16 0.50
41 16 0.50
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGAAACATTCACTTA
Found at i:66650697 original size:47 final size:47
Alignment explanation
Indices: 66650638--66650965 Score: 512
Period size: 47 Copynumber: 6.9 Consensus size: 47
66650628 TAGTATGGCG
* *
66650638 TAATGACCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
66650685 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGGGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
66650732 TAATGGCCGATGTGATGAATGTGAAACTGTATATATGTGATAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
66650779 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
66650828 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
66650875 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
66650922 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
66650966 TCCAAAAGGG
Statistics
Matches: 261, Mismatches: 18, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
47 214 0.82
49 47 0.18
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:66650894 original size:143 final size:143
Alignment explanation
Indices: 66650638--66650965 Score: 529
Period size: 143 Copynumber: 2.3 Consensus size: 143
66650628 TAGTATGGCG
* *
66650638 TAATGACCGATGTGATGAATATGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
66650701 GAATGTGAAAGTGTATATATGGGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATAT
66 GAATGTGAAAGTGTATATATGGGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATAT
*
66650766 ATGTGATAGGGCC
131 ATGTGACAGGGCC
*
66650779 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
* *
66650844 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
66 GAATGTGAAAGTGTATATATGGGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATAT
66650909 ATGTGACAGGGCC
131 ATGTGACAGGGCC
* * * * *
66650922 GAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
66650966 TCCAAAAGGG
Statistics
Matches: 173, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
141 36 0.21
142 1 0.01
143 136 0.79
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (143 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
GAATGTGAAAGTGTATATATGGGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATAT
ATGTGACAGGGCC
Done.