Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 204 of 356
Found at i:66651140 original size:37 final size:37
Alignment explanation
Indices: 66651084--66651159 Score: 109
Period size: 37 Copynumber: 2.1 Consensus size: 37
66651074 CCGAGCTCTA
* *
66651084 AAGACCCGATGACTACGTGTGG-GTATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
66651121 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
66651158 AA
1 AA
66651160 TACTTCGTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
37 34 0.97
38 1 0.03
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:66652431 original size:40 final size:40
Alignment explanation
Indices: 66652376--66652761 Score: 562
Period size: 40 Copynumber: 9.7 Consensus size: 40
66652366 GAGAATTGAG
66652376 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
66652416 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
66652456 AGTGATATATTCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
66652496 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
66652536 AGTGATATATCCGGGCTAAGTCCTGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* *
66652576 AGTGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * *
66652616 AGTAATATATCCGTGCTGAA--CCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCT-AAGTCC-CGAGGAGCATTCGTGCT
* * * *
66652656 AGTGATGTATCCGGGCTAAGTTCTGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * * *
66652696 AGTAATATATCCGTGCTAA-ACCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCC-CGAGGAGCATTCGTGCT
* * *
66652736 GGTGTTATATCCGGGCTAGGTCCCGA
1 AGTGATATATCCGGGCTAAGTCCCGA
66652762 AGAGTAATCA
Statistics
Matches: 314, Mismatches: 26, Indels: 12
0.89 0.07 0.03
Matches are distributed among these distances:
39 4 0.01
40 305 0.97
41 5 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
Found at i:66656233 original size:47 final size:47
Alignment explanation
Indices: 66656174--66656406 Score: 421
Period size: 47 Copynumber: 4.9 Consensus size: 47
66656164 TAGTATGGCG
*
66656174 TAATGACCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
66656221 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
66656268 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
66656315 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
*
66656364 TAATGGCCGATGTGATGAATGTGAAAGTTTATATATGTGATAA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
66656407 AGTCTAACTT
Statistics
Matches: 180, Mismatches: 4, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
47 135 0.75
49 45 0.25
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.31
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:66657185 original size:27 final size:28
Alignment explanation
Indices: 66657101--66657198 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
66657091 CATGAGATTG
* * * *
66657101 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
66657130 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
66657158 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
66657185 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
66657199 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:66657209 original size:27 final size:27
Alignment explanation
Indices: 66657129--66657211 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
66657119 TAAATTGTAC
* *
66657129 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
66657157 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
66657184 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
66657211 A
1 A
66657212 CTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:66665040 original size:12 final size:12
Alignment explanation
Indices: 66665023--66665049 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
66665013 ATTCCGAAGT
66665023 ATATATATATAC
1 ATATATATATAC
66665035 ATATATATATAC
1 ATATATATATAC
66665047 ATA
1 ATA
66665050 AGTATGCCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATATATAC
Found at i:66665582 original size:27 final size:28
Alignment explanation
Indices: 66665498--66665595 Score: 126
Period size: 27 Copynumber: 3.5 Consensus size: 28
66665488 CATGAGATTG
* * * * *
66665498 GCACTAAGTGTGTGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
66665527 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
66665555 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
66665582 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
66665596 GACTTAATAT
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.35
29 17 0.27
ACGTcount: A:0.27, C:0.12, G:0.29, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:66665606 original size:27 final size:27
Alignment explanation
Indices: 66665526--66665608 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
66665516 TAAATTGTAC
* *
66665526 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
66665554 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
66665581 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
66665608 A
1 A
66665609 CTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:66669381 original size:93 final size:93
Alignment explanation
Indices: 66669253--66669423 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
66669243 GCCCATAAGT
* *
66669253 GAACTCAGACTCAACTCAACGAGCTCAGGCGTTCGCATCCCTAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
66669318 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* * *
66669346 GAACTCGGACTCAACTCAATGAGTTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCAGACTCAACTCAACGAGCTCAGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
66669410 ATGAGTTCGGATGC
65 ACGAGTTCGGATGC
66669424 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:66669411 original size:46 final size:46
Alignment explanation
Indices: 66669245--66669420 Score: 173
Period size: 46 Copynumber: 3.8 Consensus size: 46
66669235 TGTAACCCGC
* * *
66669245 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
66669291 CCCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * * *
66669341 --TTCA-CGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
66669384 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
66669421 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 20
0.76 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 4 0.04
46 60 0.56
47 28 0.26
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:66669880 original size:30 final size:30
Alignment explanation
Indices: 66669846--66669905 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
66669836 ATTTAATACG
66669846 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
66669876 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
66669906 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:66674111 original size:37 final size:37
Alignment explanation
Indices: 66674058--66674160 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
66674048 CGAATAGTCC
*
66674058 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
66674095 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
66674132 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
66674161 ATATATTTCC
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:66674834 original size:48 final size:48
Alignment explanation
Indices: 66674301--66674832 Score: 857
Period size: 48 Copynumber: 11.0 Consensus size: 48
66674291 ATATAGACAC
* * *
66674301 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
66674349 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
66674397 ATCTCATACATATTTTACACTAGCCATTCGACTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
66674445 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
66674493 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
66674541 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
66674589 ATCTCATACATATTTCACACTAGGCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
66674637 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC--ATATACAT
* * * *
66674687 ATCTCATATATATTTCATATTAGCTATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
66674735 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * * *
66674783 ATATCATACATATTTCACACTAGTCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
66674831 AT
1 AT
66674833 ATTTATCTTG
Statistics
Matches: 453, Mismatches: 29, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
48 408 0.90
50 45 0.10
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:66678853 original size:40 final size:40
Alignment explanation
Indices: 66678807--66679051 Score: 339
Period size: 40 Copynumber: 6.2 Consensus size: 40
66678797 CCGAATACAC
* * * *
66678807 ATCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
* * * * *
66678847 AACACCAGCGCGAATGCTCTTCGGGACTTAACCCTGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
* * * * *
66678887 AACTCTAGCACAAATGCTCTTCGAGACTTAGCCCGGGTAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
66678927 ATCACTAGCACGAA-GCTCTTCGGGACTTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
*
66678966 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCAGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
*
66679006 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGAATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
66679046 ATCACT
1 ATCACT
66679052 CTCAATTCTC
Statistics
Matches: 181, Mismatches: 23, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
39 37 0.20
40 144 0.80
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (40 bp):
ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
Found at i:66678965 original size:79 final size:80
Alignment explanation
Indices: 66678821--66679051 Score: 329
Period size: 79 Copynumber: 2.9 Consensus size: 80
66678811 CCAGCATGAT
* * * * * *
66678821 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCGCGAATGCTCTTCGGGACTTAACCCTGATA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
*
66678886 TAACTCTAGCACAAA
66 TAACACTAGCACAAA
* *
66678901 TGCTCTTCGAGACTTAGCCCGGGTATATCACTAGCACGAA-GCTCTTCGGGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
* *
66678965 TATCACTAGCACGAA
66 TAACACTAGCACAAA
* *
66678980 TGCTCTTCGGGACTTAGCCCAGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGAATA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
*
66679045 TATCACT
66 TAACACT
66679052 CTCAATTCTC
Statistics
Matches: 135, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
79 71 0.53
80 64 0.47
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.25
Consensus pattern (80 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
TAACACTAGCACAAA
Found at i:66679034 original size:119 final size:119
Alignment explanation
Indices: 66678822--66679051 Score: 352
Period size: 119 Copynumber: 1.9 Consensus size: 119
66678812 CAGCATGATT
* *
66678822 GCTCTTCGGGACCTAGCCCGGATATAACACCAGCGCGAATGCTCTTCGGGACTTAACCCTGATAT
1 GCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAACCCAGATAT
* **
66678887 AACTCTAGCACAAATGCTCTTCGAGACTTAGCCCGGGTATATCACTAGCACGAA
66 AACACTAGCACAAATGCTCTTCGAGACTTAGCCCGAATATATCACTAGCACGAA
* * * *
66678941 GCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCAGATAT
1 GCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAACCCAGATAT
* * *
66679006 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGAATATATCACT
66 AACACTAGCACAAATGCTCTTCGAGACTTAGCCCGAATATATCACT
66679052 CTCAATTCTC
Statistics
Matches: 99, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
119 99 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (119 bp):
GCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAACCCAGATAT
AACACTAGCACAAATGCTCTTCGAGACTTAGCCCGAATATATCACTAGCACGAA
Found at i:66680382 original size:37 final size:37
Alignment explanation
Indices: 66680329--66680431 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
66680319 CGAATAGTCC
*
66680329 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
66680366 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
66680403 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
66680432 ATATATTTCC
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:66680630 original size:48 final size:48
Alignment explanation
Indices: 66680572--66681101 Score: 907
Period size: 48 Copynumber: 11.0 Consensus size: 48
66680562 ATATACACAC
* * *
66680572 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
66680620 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
66680668 ATCTCATACATATTTCACACTAGCCATTCGACTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
66680716 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
66680764 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
66680812 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
66680860 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
66680908 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
66680956 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
66681004 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * * *
66681052 ATCTCATACATATTTCACACTAGTCACTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
66681100 AT
1 AT
66681102 ATTTATCTTG
Statistics
Matches: 459, Mismatches: 23, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 459 1.00
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:66689924 original size:43 final size:43
Alignment explanation
Indices: 66689874--66690027 Score: 186
Period size: 43 Copynumber: 3.6 Consensus size: 43
66689864 TAGCCTAGAT
* * *
66689874 ATGGTCTTACATGTTATCACATATCGATGCCACTGTCCCAGAC
1 ATGGTCTTACATGTAATCACATATCAATGCCAATGTCCCAGAC
* * * *
66689917 AGGGTCTTACATGGAATCGA-TTAACAATGCCAATGTCCCAGAC
1 ATGGTCTTACATGTAATC-ACATATCAATGCCAATGTCCCAGAC
* * *
66689960 ATGGTCTTACACGTAATTACA-ATACAATGCCAATGTGCCAGAC
1 ATGGTCTTACATGTAATCACATAT-CAATGCCAATGTCCCAGAC
66690003 ATGGTCTTACATGTAATCACATATC
1 ATGGTCTTACATGTAATCACATATC
66690028 GATAACCTAA
Statistics
Matches: 91, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
42 2 0.02
43 86 0.95
44 3 0.03
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (43 bp):
ATGGTCTTACATGTAATCACATATCAATGCCAATGTCCCAGAC
Found at i:66690829 original size:30 final size:30
Alignment explanation
Indices: 66690795--66690891 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
66690785 AGCTCACTCC
66690795 TAGCTCATA-TTCAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTCAGCTCACGAGCTAAACCT
* * * * *
66690825 TAGCTCAACTTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
* * *
66690855 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
66690885 TAGCTCA
1 TAGCTCA
66690892 TTTTAGCTTA
Statistics
Matches: 52, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
29 1 0.02
30 51 0.98
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (30 bp):
TAGCTCAACTTCAGCTCACGAGCTAAACCT
Found at i:66693372 original size:30 final size:30
Alignment explanation
Indices: 66693287--66693383 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
66693277 TAAACTAAAA
* *
66693287 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
* * * * * *
66693317 TGAGCTGAGGCTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
66693347 TGAGCTAAGGTTTAGCTCGTGAGCTGAA-T
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
66693376 ATGAGCTA
1 -TGAGCTA
66693384 GGAGTGAGCT
Statistics
Matches: 52, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
29 1 0.02
30 51 0.98
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
Found at i:66702255 original size:18 final size:18
Alignment explanation
Indices: 66702234--66702296 Score: 74
Period size: 18 Copynumber: 3.4 Consensus size: 18
66702224 ATACTCACTC
66702234 TCTTTTTCAATTTTCTTT
1 TCTTTTTCAATTTTCTTT
**
66702252 TCTTAATCAA-TTTCTTTT
1 TCTTTTTCAATTTTC-TTT
*
66702270 TCTTTTTCAATTTCACTTT
1 TCTTTTTCAATTT-TCTTT
66702289 TCTTTTTC
1 TCTTTTTC
66702297 TCACTTTCTT
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
17 4 0.11
18 19 0.51
19 13 0.35
20 1 0.03
ACGTcount: A:0.14, C:0.19, G:0.00, T:0.67
Consensus pattern (18 bp):
TCTTTTTCAATTTTCTTT
Found at i:66702304 original size:14 final size:15
Alignment explanation
Indices: 66702282--66702319 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
66702272 TTTTTCAATT
66702282 TCACTTTTCTTTTT-C
1 TCAC-TTTCTTTTTGC
66702297 TCACTTTCTTTTTGC
1 TCACTTTCTTTTTGC
*
66702312 TCTCTTTC
1 TCACTTTC
66702320 ACTCTCTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 9 0.43
15 12 0.57
ACGTcount: A:0.05, C:0.29, G:0.03, T:0.63
Consensus pattern (15 bp):
TCACTTTCTTTTTGC
Found at i:66702784 original size:63 final size:64
Alignment explanation
Indices: 66702705--66702836 Score: 221
Period size: 63 Copynumber: 2.1 Consensus size: 64
66702695 TCTTGTTGGG
* * *
66702705 CTCTTGCTCGTTGATCGCGCTTTTCTTGGATAGGCTTGATTTTTCGGTTGAGCATGCACTCTAT
1 CTCTTGCTCGATGATCGCACTTTTCTTGGATAGGCTTGATTTATCGGTTGAGCATGCACTCTAT
*
66702769 -TCTTGCTCGATGATCGTACTTTTCTTGGATAGGCTTGATTTATCGGTTGAGCATGCACTCTAT
1 CTCTTGCTCGATGATCGCACTTTTCTTGGATAGGCTTGATTTATCGGTTGAGCATGCACTCTAT
66702832 CTCTT
1 CTCTT
66702837 TCAAAAAATA
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
63 59 0.94
64 4 0.06
ACGTcount: A:0.14, C:0.21, G:0.22, T:0.42
Consensus pattern (64 bp):
CTCTTGCTCGATGATCGCACTTTTCTTGGATAGGCTTGATTTATCGGTTGAGCATGCACTCTAT
Found at i:66704572 original size:26 final size:26
Alignment explanation
Indices: 66704543--66704695 Score: 114
Period size: 27 Copynumber: 5.7 Consensus size: 26
66704533 TTAGTTTACC
*
66704543 AAATTACTGAAATATCCTCAGTTGTA
1 AAATTACTGAAATACCCTCAGTTGTA
* *
66704569 AAATTAC-CAAAGTACCCTCAGTTTATA
1 AAATTACTGAAA-TACCCTCAG-TTGTA
** * *
66704596 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACTGAAATACCCTC-AGTTGTA
*
66704623 AAATTA-TCGAAATACCCTCAGTTTGCA
1 AAATTACT-GAAATACCCTCAG-TTGTA
* **
66704650 AAATTATTGAAATACCCTCGACATGTA
1 AAATTACTGAAATACCCTC-AGTTGTA
*
66704677 AAATTA-TCAAAGTACCCTC
1 AAATTACTGAAA-TACCCTC
66704696 GATTTACAAA
Statistics
Matches: 103, Mismatches: 15, Indels: 17
0.76 0.11 0.13
Matches are distributed among these distances:
25 3 0.03
26 20 0.19
27 73 0.71
28 7 0.07
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (26 bp):
AAATTACTGAAATACCCTCAGTTGTA
Found at i:66704646 original size:54 final size:54
Alignment explanation
Indices: 66704535--66704711 Score: 207
Period size: 54 Copynumber: 3.3 Consensus size: 54
66704525 AGAATACTTT
* * * *
66704535 AGTTTACCAAATTACTGAAATATCCTC-AGTTGTAAAATTACCAAAGTACCCTC
1 AGTTTACAAAATTACCGAAATATCCTCGACTTGTAAAATTATCAAAGTACCCTC
* * *
66704588 AGTTTATAAAATTACCCAAATATCCTCGATTTGTAAAATTATCGAAA-TACCCTC
1 AGTTTACAAAATTACCGAAATATCCTCGACTTGTAAAATTATC-AAAGTACCCTC
* ** * *
66704642 AGTTTGCAAAATTATTGAAATACCCTCGACATGTAAAATTATCAAAGTACCCTC
1 AGTTTACAAAATTACCGAAATATCCTCGACTTGTAAAATTATCAAAGTACCCTC
66704696 -GATTTACAAAATTACC
1 AG-TTTACAAAATTACC
66704712 ATTTTACCCT
Statistics
Matches: 103, Mismatches: 17, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
53 27 0.26
54 73 0.71
55 3 0.03
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (54 bp):
AGTTTACAAAATTACCGAAATATCCTCGACTTGTAAAATTATCAAAGTACCCTC
Found at i:66704719 original size:27 final size:27
Alignment explanation
Indices: 66704689--66705105 Score: 302
Period size: 27 Copynumber: 15.4 Consensus size: 27
66704679 ATTATCAAAG
*
66704689 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
66704716 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
66704743 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * *
66704770 TACCCTCAATTTACAGAGTTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
66704797 TACCCTTGAATTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* ** *
66704824 TACCCTCGATTTACAGAATTACCGTTC
1 TACCCTCGATTTACAAAATTACTATTT
* * *
66704851 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * * *
66704878 TACCCTCAATTTAGAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * * * ***
66704905 CACCCTTGATTTAGAAAATTACAAAAA
1 TACCCTCGATTTACAAAATTACTATTT
* ** ***
66704932 TACCC-CTGGTTTGTAAAATTACTAAAA
1 TACCCTC-GATTTACAAAATTACTATTT
* ** **
66704959 T-CCCCCTGATTTGTAAAATTACTGA-AA
1 TACCCTC-GATTTACAAAATTACT-ATTT
* * ***
66704986 TACCCTCGACTGGTA-AAAATTACCAAAG
1 TACCCTCGA-T-TTACAAAATTACTATTT
* * * *
66705014 TACCCTCGATTTATAGAATTACTGTTC
1 TACCCTCGATTTACAAAATTACTATTT
* * *
66705041 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
66705068 TACCCTTGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
66705095 TACCCTCGATT
1 TACCCTCGATT
66705106 GTGAAATTAC
Statistics
Matches: 324, Mismatches: 58, Indels: 16
0.81 0.15 0.04
Matches are distributed among these distances:
26 5 0.02
27 294 0.91
28 24 0.07
29 1 0.00
ACGTcount: A:0.33, C:0.22, G:0.08, T:0.37
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTATTT
Found at i:66705140 original size:27 final size:27
Alignment explanation
Indices: 66705110--66705582 Score: 619
Period size: 27 Copynumber: 17.6 Consensus size: 27
66705100 TCGATTGTGA
* *
66705110 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * ** *
66705137 AATTACCAAAACACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* *
66705164 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
66705191 AATTACTAAAATA-CCCTAGTAAGGTAG
1 AATTACCGAAATACCCCT-GTAGGGTAG
*
66705218 AATTACCG-AATACCTCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
66705244 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
66705271 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
66705298 AATTACCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
66705325 AATTACCGTAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
66705352 AACTACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
66705379 AATTATCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
66705406 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
66705433 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
66705460 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
66705487 AATTATCGCAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
66705514 AATTACCGAAATACCCCTGTCGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
66705541 AATTACTAAAATACCCCTGTAAGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
66705568 AATTACCGAGATACC
1 AATTACCGAAATACC
66705583 TTGTGGAGTA
Statistics
Matches: 386, Mismatches: 55, Indels: 10
0.86 0.12 0.02
Matches are distributed among these distances:
26 25 0.06
27 360 0.93
28 1 0.00
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:66705879 original size:27 final size:26
Alignment explanation
Indices: 66705841--66705892 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
66705831 CTCACTGCAA
*
66705841 TCTGGTGGCTTCGCCACATATATCTGT
1 TCTGGTGACTTCGCCACA-ATATCTGT
*
66705868 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACTTCGCCACAATATCTG
66705893 GCAGCCTCGC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.37
Consensus pattern (26 bp):
TCTGGTGACTTCGCCACAATATCTGT
Found at i:66705930 original size:67 final size:67
Alignment explanation
Indices: 66705822--66705975 Score: 299
Period size: 67 Copynumber: 2.3 Consensus size: 67
66705812 GAGGAAGCGT
*
66705822 TCTGGCAGCCTCACTGCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
66705887 TA
66 TA
66705889 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
66705954 TA
66 TA
66705956 TCTGGCAGCCTCGCTGCAAT
1 TCTGGCAGCCTCGCTGCAAT
66705976 TTCTGTGGTG
Statistics
Matches: 86, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
67 86 1.00
ACGTcount: A:0.18, C:0.29, G:0.22, T:0.31
Consensus pattern (67 bp):
TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
TA
Found at i:66705946 original size:27 final size:26
Alignment explanation
Indices: 66705908--66705959 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
66705898 CTCGCTGCAA
*
66705908 TCTGGTGGCTTCGCCACATATATCTGT
1 TCTGGTGACTTCGCCACA-ATATCTGT
*
66705935 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACTTCGCCACAATATCTG
66705960 GCAGCCTCGC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.37
Consensus pattern (26 bp):
TCTGGTGACTTCGCCACAATATCTGT
Found at i:66706087 original size:6 final size:6
Alignment explanation
Indices: 66706078--66706236 Score: 146
Period size: 6 Copynumber: 25.8 Consensus size: 6
66706068 TTGCATTCAC
*
66706078 ATTCTG ATTCTG ATTCTG -TTACCTG ATTCTG ATTCTG GTTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
66706127 ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TTACCTA ATTCTG ATTCTG
1 ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * * *
66706177 GTTCTG ATTTTG ATTCTG -TCACCTG ATTTTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
*
66706226 ATTTTG ATTCT
1 ATTCTG ATTCT
66706237 AGTTATGATA
Statistics
Matches: 125, Mismatches: 16, Indels: 24
0.76 0.10 0.15
Matches are distributed among these distances:
5 7 0.06
6 101 0.81
7 11 0.09
8 6 0.05
ACGTcount: A:0.16, C:0.18, G:0.16, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:66706129 original size:37 final size:37
Alignment explanation
Indices: 66706078--66706157 Score: 142
Period size: 37 Copynumber: 2.2 Consensus size: 37
66706068 TTGCATTCAC
*
66706078 ATTCTGATTCTGATTCTGTTACCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTGATTCTG
*
66706115 GTTCTGATTCTGATTCTGTTACCTGATACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTGATTCTG
66706152 ATTCTG
1 ATTCTG
66706158 TTACCTAATT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.16, C:0.19, G:0.17, T:0.47
Consensus pattern (37 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTGATTCTG
Found at i:66706178 original size:62 final size:62
Alignment explanation
Indices: 66706081--66706219 Score: 233
Period size: 62 Copynumber: 2.2 Consensus size: 62
66706071 CATTCACATT
* *
66706081 CTGATTCTGATTCTGTTACCTGATTCTGATTCTGGTTCTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTAATTCTGATTCTGGTTCTGATTCTGATTCTGTCACCTGATA
* *
66706143 CTGATTCTGATTCTGTTACCTAATTCTGATTCTGGTTCTGATTTTGATTCTGTCACCTGATT
1 CTGATTCTGATTCTGTTACCTAATTCTGATTCTGGTTCTGATTCTGATTCTGTCACCTGATA
*
66706205 TTGATTCTGATTCTG
1 CTGATTCTGATTCTG
66706220 ATTCTGATTT
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 72 1.00
ACGTcount: A:0.16, C:0.19, G:0.17, T:0.48
Consensus pattern (62 bp):
CTGATTCTGATTCTGTTACCTAATTCTGATTCTGGTTCTGATTCTGATTCTGTCACCTGATA
Found at i:66706184 original size:37 final size:37
Alignment explanation
Indices: 66706137--66706228 Score: 130
Period size: 37 Copynumber: 2.5 Consensus size: 37
66706127 ATTCTGTTAC
* *
66706137 CTGATACTGATTCTGATTCTGTTACCTAATTCTGATT
1 CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
* * * *
66706174 CTGGTTCTGATTTTGATTCTGTCACCTGATTTTGATT
1 CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
66706211 CTGATTCTGATTCTGATT
1 CTGATTCTGATTCTGATT
66706229 TTGATTCTAG
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 47 1.00
ACGTcount: A:0.17, C:0.17, G:0.16, T:0.49
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
Found at i:66706245 original size:18 final size:18
Alignment explanation
Indices: 66706078--66706245 Score: 94
Period size: 19 Copynumber: 9.1 Consensus size: 18
66706068 TTGCATTCAC
*
66706078 ATTCTGATTCTGATTCTG
1 ATTCTGATTCTGATTATG
*
66706096 -TTACCTGATTCTGATTCTG
1 ATT--CTGATTCTGATTATG
* *
66706115 GTTCTGATTCTGATTCTG
1 ATTCTGATTCTGATTATG
* *
66706133 -TTACCTGATACTGATTCTG
1 ATT--CTGATTCTGATTATG
* *
66706152 ATTCTG-TTACCTAATTCTG
1 ATTCTGATT--CTGATTATG
* *
66706171 ATTCTGGTTCTGATTTTG
1 ATTCTGATTCTGATTATG
* *
66706189 ATTCTG-TCACCTGATTTTG
1 ATTCTGAT--TCTGATTATG
*
66706208 ATTCTGATTCTGATTCTG
1 ATTCTGATTCTGATTATG
*
66706226 ATTTTGATTCT-AGTTATG
1 ATTCTGATTCTGA-TTATG
66706244 AT
1 AT
66706246 AATGTTTCTT
Statistics
Matches: 127, Mismatches: 10, Indels: 26
0.78 0.06 0.16
Matches are distributed among these distances:
17 7 0.06
18 55 0.43
19 58 0.46
20 7 0.06
ACGTcount: A:0.17, C:0.17, G:0.17, T:0.49
Consensus pattern (18 bp):
ATTCTGATTCTGATTATG
Found at i:66710007 original size:46 final size:45
Alignment explanation
Indices: 66709957--66710132 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 45
66709947 TGGTTGAGCA
66709957 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * * *
66710003 TCCGAACTCGTTGGGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
*
66710048 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
66710096 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
66710133 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.57
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:66710114 original size:93 final size:93
Alignment explanation
Indices: 66709954--66710125 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
66709944 GGATGGTTGA
* * *
66709954 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGGGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
66710019 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
66710047 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
66710112 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
66710126 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:66715049 original size:27 final size:28
Alignment explanation
Indices: 66714965--66715062 Score: 126
Period size: 27 Copynumber: 3.5 Consensus size: 28
66714955 CATGAGATTG
* * * *
66714965 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
66714994 GCACGAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
66715022 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
66715049 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
66715063 GACTTAATAT
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 24 0.39
28 21 0.34
29 17 0.27
ACGTcount: A:0.27, C:0.13, G:0.30, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:66715073 original size:27 final size:27
Alignment explanation
Indices: 66714993--66715075 Score: 87
Period size: 27 Copynumber: 3.0 Consensus size: 27
66714983 TAAATTGTAC
* * *
66714993 AGCACGAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
66715021 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
66715048 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
66715075 A
1 A
66715076 TTTTTGAATC
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
27 30 0.61
28 19 0.39
ACGTcount: A:0.30, C:0.12, G:0.27, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:66715076 original size:29 final size:27
Alignment explanation
Indices: 66714965--66715076 Score: 89
Period size: 28 Copynumber: 4.0 Consensus size: 27
66714955 CATGAGATTG
** * *
66714965 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* * *
66714994 GCACGAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
66715022 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
66715049 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
66715077 TTTTGAATCA
Statistics
Matches: 70, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
27 23 0.33
28 27 0.39
29 20 0.29
ACGTcount: A:0.29, C:0.12, G:0.27, T:0.32
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:66720578 original size:46 final size:45
Alignment explanation
Indices: 66720528--66720703 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 45
66720518 TGGTTGAGCA
66720528 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
66720574 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
*
66720619 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
66720667 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
66720704 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:66720684 original size:93 final size:93
Alignment explanation
Indices: 66720525--66720696 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
66720515 GGATGGTTGA
* *
66720525 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
66720590 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
66720618 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
66720683 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
66720697 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:66725629 original size:27 final size:28
Alignment explanation
Indices: 66725545--66725642 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
66725535 CATGAGATTG
* * * *
66725545 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
66725574 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
66725602 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
66725629 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
66725643 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:66725653 original size:27 final size:27
Alignment explanation
Indices: 66725573--66725655 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
66725563 TAAATTGTAC
* *
66725573 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
66725601 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
66725628 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
66725655 A
1 A
66725656 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:66725656 original size:29 final size:27
Alignment explanation
Indices: 66725545--66725656 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
66725535 CATGAGATTG
** * *
66725545 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
66725574 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
66725602 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
66725629 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
66725657 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:66742258 original size:19 final size:19
Alignment explanation
Indices: 66742234--66742274 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
66742224 TTATATCAAT
66742234 ATTCCTACCAATAATGTGA
1 ATTCCTACCAATAATGTGA
66742253 ATTCCTACCAATAATGTGA
1 ATTCCTACCAATAATGTGA
66742272 ATT
1 ATT
66742275 TTATTGAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.34
Consensus pattern (19 bp):
ATTCCTACCAATAATGTGA
Found at i:66746781 original size:27 final size:27
Alignment explanation
Indices: 66746702--66746771 Score: 140
Period size: 27 Copynumber: 2.6 Consensus size: 27
66746692 CAGTTCACAA
66746702 AAACCAACTGGCGAACCTTAGCTCACC
1 AAACCAACTGGCGAACCTTAGCTCACC
66746729 AAACCAACTGGCGAACCTTAGCTCACC
1 AAACCAACTGGCGAACCTTAGCTCACC
66746756 AAACCAACTGGCGAAC
1 AAACCAACTGGCGAAC
66746772 TCCAGCTCAC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.36, C:0.36, G:0.16, T:0.13
Consensus pattern (27 bp):
AAACCAACTGGCGAACCTTAGCTCACC
Found at i:66749642 original size:49 final size:49
Alignment explanation
Indices: 66749421--66749926 Score: 820
Period size: 49 Copynumber: 10.6 Consensus size: 49
66749411 CCCTTCGGGA
* * * * *
66749421 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
66749468 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
66749515 CTCATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66749562 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66749609 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66749658 CTTATCACTTATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66749707 CTTATCACATATATATACACTTTCACATTCATCACAGCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66749756 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66749805 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66749854 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66749901 CTTATCACATATATATACA--TTCACAT
1 CTTATCACATATATATACACTTTCACAT
66749927 CACAATTATC
Statistics
Matches: 434, Mismatches: 19, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 186 0.43
49 247 0.57
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:66753325 original size:64 final size:64
Alignment explanation
Indices: 66753224--66753356 Score: 241
Period size: 64 Copynumber: 2.1 Consensus size: 64
66753214 AGCTCCTAAG
*
66753224 TTTTCAAGGAGGCTTTTAGTTTGAATCCCCTTACTCCCATATTTTTATTAAATTTTTGCACACT
1 TTTTCAAGGAGGCTTTTAGTTTGAATCCCCTTACTCCCATATTTTTATTAAATTTCTGCACACT
66753288 TTTTCAAGGAGG-TCTTTAGTTTGAATCCCCTTACTCCCATATTTTTATTAAATTTCTGCACACT
1 TTTTCAAGGAGGCT-TTTAGTTTGAATCCCCTTACTCCCATATTTTTATTAAATTTCTGCACACT
66753352 TTTTC
1 TTTTC
66753357 TACATTAACT
Statistics
Matches: 67, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
63 1 0.01
64 66 0.99
ACGTcount: A:0.23, C:0.21, G:0.11, T:0.46
Consensus pattern (64 bp):
TTTTCAAGGAGGCTTTTAGTTTGAATCCCCTTACTCCCATATTTTTATTAAATTTCTGCACACT
Found at i:66755905 original size:19 final size:19
Alignment explanation
Indices: 66755881--66755919 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
66755871 AACTTAGACC
*
66755881 ATTAGAAAAATGTTTTCAA
1 ATTAGAAAAATGGTTTCAA
66755900 ATTAGAAAAATGGTTTCAA
1 ATTAGAAAAATGGTTTCAA
66755919 A
1 A
66755920 AAACTTCATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.49, C:0.05, G:0.13, T:0.33
Consensus pattern (19 bp):
ATTAGAAAAATGGTTTCAA
Found at i:66759767 original size:40 final size:40
Alignment explanation
Indices: 66759712--66760390 Score: 1050
Period size: 40 Copynumber: 17.1 Consensus size: 40
66759702 ATATGTGTGC
*
66759712 AAGGCATTTGTGCGAATTGATATATCCGGGCTAAGACCCG
1 AAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCG
* * * *
66759752 AAGGCATTTGTGCGAACTGATATATCCGGGTTTAGACTCG
1 AAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCG
66759792 AAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCG
1 AAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCG
* * *
66759832 AAGGCATTTGTGCGAATTGATATATCGGGGTTTAGACCCG
1 AAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCG
* *
66759872 AAGGCATTTGTGCGAATTGATATATCTGGGCTAAGACCCG
1 AAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCG
* * * *
66759912 AAGGCATTTGTGCGAACTGATATATCCGGGTTTAGACTCG
1 AAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCG
66759952 AAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCG
1 AAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCG
*
66759992 AAGGCATTTGTGCGAATTGATATATCCGGGATAAGACTCG
1 AAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCG
*
66760032 AAGGTATTTGTGCGAATTGATATATCCGGGATAAGACCCG
1 AAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCG
*
66760072 AGGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCG
1 AAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCG
66760112 AAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCG
1 AAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCG
*
66760152 -A---A---GTGCGAATTGATATATCCGGGCTAAGACCCG
1 AAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCG
66760185 AAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCG
1 AAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCG
* *
66760225 AAGGCATTTGTGCGAATTGATATATCCGGGCTAAGACCCA
1 AAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCG
66760265 AAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCG
1 AAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCG
* *
66760305 AAGGCAATTGTGC-AAGTTGATATATCCGGGCTAAGACCCG
1 AAGGCATTTGTGCGAA-TTGATATATCCGGGATAAGACCCG
* * * * *
66760345 AAGGCATTCGTGCGAGTTGCTATACCCGGGTTAAGACCCG
1 AAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCG
66760385 AAGGCA
1 AAGGCA
66760391 ATTGAGCTTG
Statistics
Matches: 587, Mismatches: 43, Indels: 18
0.91 0.07 0.03
Matches are distributed among these distances:
33 30 0.05
34 1 0.00
36 1 0.00
37 1 0.00
39 3 0.01
40 550 0.94
41 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (40 bp):
AAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCG
Found at i:66767537 original size:40 final size:40
Alignment explanation
Indices: 66767482--66768087 Score: 962
Period size: 40 Copynumber: 15.2 Consensus size: 40
66767472 ATATGTGTGC
* *
66767482 AAGGCATTTGTGCGAATTGATATATCCGGGCTAAGACTCG
1 AAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCG
* * * *
66767522 AAGGCATTTGTGCGAACTGATATATCCGGGTTTAGACTCG
1 AAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCG
66767562 AAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCG
1 AAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCG
* * *
66767602 AAGGCATTTGTGCGAATTGATATATCGGGGTTTAGACCCG
1 AAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCG
*
66767642 AAGGCATTTGTGCGAATTGATATATCCGGGCTAAGACCCG
1 AAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCG
* * * *
66767682 AAGGCATTTGTGCGAACTGATATATCCGGGTTTAGACTCG
1 AAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCG
*
66767722 AAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCA
1 AAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCG
66767762 AAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCG
1 AAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCG
*
66767802 AGGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCG
1 AAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCG
66767842 AAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCG
1 AAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCG
*
66767882 AAGGCATTTGTGCGAATTGATATATCCGGGCTAAGACCCG
1 AAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCG
*
66767922 AAGGCATTTGTGCGAATTGATATATCCGGGCTAAGACCCG
1 AAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCG
66767962 AAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCG
1 AAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCG
* *
66768002 AAGGCAATTGTGC-AAGTTGATATATCCGGGCTAAGACCCG
1 AAGGCATTTGTGCGAA-TTGATATATCCGGGATAAGACCCG
* * * * * *
66768042 AAGGCATTCGTGCGAGTTGCTATACCCGGGTTAGGACCCG
1 AAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCG
66768082 AAGGCA
1 AAGGCA
66768088 ATTGAGCTTG
Statistics
Matches: 528, Mismatches: 36, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
39 2 0.00
40 525 0.99
41 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (40 bp):
AAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCG
Found at i:66783832 original size:13 final size:13
Alignment explanation
Indices: 66783811--66783842 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
66783801 ATATATATAT
*
66783811 GTACCGAAACAGA
1 GTACTGAAACAGA
66783824 GTACTGAAACAGA
1 GTACTGAAACAGA
66783837 GTACTG
1 GTACTG
66783843 CTCAGAAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.41, C:0.19, G:0.25, T:0.16
Consensus pattern (13 bp):
GTACTGAAACAGA
Found at i:66786993 original size:49 final size:48
Alignment explanation
Indices: 66786931--66787058 Score: 152
Period size: 49 Copynumber: 2.6 Consensus size: 48
66786921 ACATCAAAGT
* * *
66786931 CGATCCCATGTCCCAAACAGGTCTTACGA-TGACTTTCATATATTGAGGC-
1 CGATGCCATGTCCCAGACAGGTCTTAC-ACTGACTCTCATATA-T-AGGCG
* * *
66786980 CGATGCCATGTCCCAGACAAGTCTTACACTGGCTCTCATCTATAGGCG
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATAGGCG
66787028 TCGATGCCATGTCCCAGACAGGTCTTACACT
1 -CGATGCCATGTCCCAGACAGGTCTTACACT
66787059 AGCTTTTATA
Statistics
Matches: 69, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
47 4 0.06
48 2 0.03
49 63 0.91
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.27
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATAGGCG
Found at i:66787148 original size:46 final size:46
Alignment explanation
Indices: 66786978--66787249 Score: 171
Period size: 46 Copynumber: 5.7 Consensus size: 46
66786968 ATATATTGAG
* * *
66786978 GCCGATGCCATGTCCCAGACAAGTCTTACACTGGCTCTC--ATCTATAG
1 GCCGATG-CATGTCCCAGACATGTCTTACACTAGCTCTCGTATC-A-AT
* * ** * *
66787025 GCGTCGATGCCATGTCCCAGACAGGTCTTACACTAGCTTTTATATCTCGAG
1 GC--CGATG-CATGTCCCAGACATGTCTTACACTAGCTCTCGTA--TCAAT
** * *
66787076 GATGATGCATGTCCTAGATATGTCTTACACTAGCTCTCGTATCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTATCAAT
* * * *
66787122 GCCGATGGATGTCCCAGACATGTCTTACACTGGCT-T-GTATATCTTGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCG--TATC--AAT
* * *
66787170 GCCGATGCATGTCCTAGACATGTCTTACACTGGCTCCCG--T-AAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTATCAAT
*
66787213 GTCGCTGATGCATGTCCCAGACGTGTCTTACACTAGC
1 G-C-C-GATGCATGTCCCAGACATGTCTTACACTAGC
66787250 ACACATATCA
Statistics
Matches: 179, Mismatches: 31, Indels: 31
0.74 0.13 0.13
Matches are distributed among these distances:
43 2 0.01
44 2 0.01
45 2 0.01
46 65 0.36
47 2 0.01
48 62 0.35
49 37 0.21
50 1 0.01
51 4 0.02
53 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.29
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTATCAAT
Found at i:66787201 original size:48 final size:48
Alignment explanation
Indices: 66786937--66787204 Score: 212
Period size: 48 Copynumber: 5.6 Consensus size: 48
66786927 AAGTCGATCC
* * * *
66786937 CATGTCCCAAACAGGTCTTACGA-TGACTT-TCATATATTGAGGCCGATG
1 CATGTCCCAGACATGTCTTAC-ACTGGCTTGT-ATATCTTGAGGCCGATG
* * *
66786985 CCATGTCCCAGACAAGTCTTACACTGGC-TCT-CATCTAT-AGGCGTCGATG
1 -CATGTCCCAGACATGTCTTACACTGGCTTGTATATCT-TGAGGC--CGATG
* * * * **
66787034 CCATGTCCCAGACAGGTCTTACACTAGCTTTTATATCTCGAGGATGATG
1 -CATGTCCCAGACATGTCTTACACTGGCTTGTATATCTTGAGGCCGATG
* * * * *
66787083 CATGTCCTAGATATGTCTTACACTAGCTCTCG--TATC--AATGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCT-T-GTATATCTTGAGGCCGATG
*
66787129 GATGTCCCAGACATGTCTTACACTGGCTTGTATATCTTGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTTGTATATCTTGAGGCCGATG
*
66787177 CATGTCCTAGACATGTCTTACACTGGCT
1 CATGTCCCAGACATGTCTTACACTGGCT
66787205 CCCGTAATGT
Statistics
Matches: 177, Mismatches: 28, Indels: 29
0.76 0.12 0.12
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 34 0.19
47 7 0.04
48 66 0.37
49 59 0.33
50 2 0.01
51 7 0.04
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.30
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTGGCTTGTATATCTTGAGGCCGATG
Found at i:66787258 original size:94 final size:94
Alignment explanation
Indices: 66786967--66787258 Score: 288
Period size: 94 Copynumber: 3.1 Consensus size: 94
66786957 CGATGACTTT
* * * * *
66786967 CATATATTGAGGCCGATGCCATGTCCCAGACAAGTCTTACACTGGCTCTCATCTATAG-GCGTCG
1 CATATCTTGAGGCCGATG-CATGTCCTAGACATGTCTTACACTGGCTCTCGTCAAT-GCGC-T-G
*
66787031 ATGCCATGTCCCAGACAG-GTCTTACACTAGCTTT
62 ATG-CATGTCCCAGAC-GTGTCTTACACTAGCTTA
* * ** * *
66787065 TATATCTCGAGGATGATGCATGTCCTAGATATGTCTTACACTAGCTCTCGTATCAATGC-C-GAT
1 CATATCTTGAGGCCGATGCATGTCCTAGACATGTCTTACACTGGCTCTCG--TCAATGCGCTGAT
* * * *
66787128 GGATGTCCCAGACATGTCTTACACTGGCTTG
64 GCATGTCCCAGACGTGTCTTACACTAGCTTA
* *
66787159 TATATCTTGAGGCCGATGCATGTCCTAGACATGTCTTACACTGGCTCCCGT-AATGTCGCTGATG
1 CATATCTTGAGGCCGATGCATGTCCTAGACATGTCTTACACTGGCTCTCGTCAATG-CGCTGATG
**
66787223 CATGTCCCAGACGTGTCTTACACTAGCACA
65 CATGTCCCAGACGTGTCTTACACTAGCTTA
66787253 CATATC
1 CATATC
66787259 ACCCAATGTC
Statistics
Matches: 159, Mismatches: 28, Indels: 18
0.78 0.14 0.09
Matches are distributed among these distances:
91 4 0.03
92 2 0.01
93 1 0.01
94 102 0.64
95 4 0.03
97 27 0.17
98 15 0.09
99 4 0.03
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (94 bp):
CATATCTTGAGGCCGATGCATGTCCTAGACATGTCTTACACTGGCTCTCGTCAATGCGCTGATGC
ATGTCCCAGACGTGTCTTACACTAGCTTA
Found at i:66796210 original size:42 final size:39
Alignment explanation
Indices: 66796164--66796310 Score: 188
Period size: 40 Copynumber: 3.6 Consensus size: 39
66796154 GATAACTCGT
*
66796164 ACACTAAGTGCCAATACATAGTCGAAGCTATTAT-AATCTCGC
1 ACACTAAGTGCC-ATACATAGCCGAAGCTATT-TGAA--TCGC
*
66796206 ACACTAAGTGCCATATATAGCCGAAGCTATTTCGAATCGC
1 ACACTAAGTGCCATACATAGCCGAAGCTATTT-GAATCGC
* *
66796246 ACACTGAGTGCCATATATAGCCGAAGCTATCTTGAATCGC
1 ACACTAAGTGCCATACATAGCCGAAGCTAT-TTGAATCGC
*
66796286 TCACTAAGTGCCATACATAGCCGAA
1 ACACTAAGTGCCATACATAGCCGAA
66796311 TTGTCAACAA
Statistics
Matches: 96, Mismatches: 6, Indels: 8
0.87 0.05 0.07
Matches are distributed among these distances:
40 63 0.66
41 19 0.20
42 14 0.15
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.24
Consensus pattern (39 bp):
ACACTAAGTGCCATACATAGCCGAAGCTATTTGAATCGC
Found at i:66797769 original size:45 final size:45
Alignment explanation
Indices: 66797717--66797803 Score: 147
Period size: 45 Copynumber: 1.9 Consensus size: 45
66797707 TATGTAATCT
*
66797717 GAACTCATTGAGTTATGGTCTGAGTTCATGATATATGTGACATCC
1 GAACTCATTGAGTTATGGTCTAAGTTCATGATATATGTGACATCC
* *
66797762 GAACTCATTGAGTTGTGGTCTAAGTTCGTGATATATGTGACA
1 GAACTCATTGAGTTATGGTCTAAGTTCATGATATATGTGACA
66797804 CATGTTTTGG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.36
Consensus pattern (45 bp):
GAACTCATTGAGTTATGGTCTAAGTTCATGATATATGTGACATCC
Found at i:66804654 original size:48 final size:48
Alignment explanation
Indices: 66804583--66804948 Score: 265
Period size: 48 Copynumber: 7.6 Consensus size: 48
66804573 ATCCAAATGT
* * * * * * * *
66804583 CGATGCCATATCCCGGATATGGTCTTATACAAAATCTCATGTCAGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACAGAATCACATATCAGCGC
* *
66804631 CGATGCCATGTCCCAGACATGGTCTTACACTAGCA-CACACATCAGCGC
1 CGATGCCATGTCCCAGACATGGTCTTACAC-AGAATCACATATCAGCGC
* * * * *
66804679 CGATGCCATGTCCCAGACATGTTATTACACTGACTCACATATCCA-TGC
1 CGATGCCATGTCCCAGACATGGTCTTACACAGAATCACATAT-CAGCGC
* ** *
66804727 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATTTC-GACGC
1 CGATGCCATGTCCCAGACATGGTCTTACACAGAATCACATATCAG-CGC
* ** * * * *
66804775 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATTTTAACAC
1 CGATGCCATGTCCCAGACATGGTCTTACACAGAATCACATATCAGCGC
* * * * ** * * *
66804823 CGATACCATATCCCAGATATGGTCTTACACTGGCTTACACATCAATC-C
1 CGATGCCATGTCCCAGACATGGTCTTACACAGAATCACATATC-AGCGC
* * * * ** * *
66804871 CGATGCCATGTCCTAGATATGGTCTTATACGGGGTCTCATATC-GATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACAGAATCACATATCAG-CGC
66804919 CGATGCCATGTCCCAGACATGGTCTTACAC
1 CGATGCCATGTCCCAGACATGGTCTTACAC
66804949 GGGACCTTAT
Statistics
Matches: 262, Mismatches: 47, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
47 2 0.01
48 254 0.97
49 6 0.02
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.26
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACAGAATCACATATCAGCGC
Found at i:66804951 original size:48 final size:48
Alignment explanation
Indices: 66804628--66804948 Score: 381
Period size: 48 Copynumber: 6.7 Consensus size: 48
66804618 CTCATGTCAG
* * * *
66804628 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACACATCAG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAA
* * * * *
66804676 CGCCGATGCCATGTCCCAGACATGTTATTACACTGACTCACATATCCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAA
* *
66804724 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATTTCGA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAA
* * *
66804772 CGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATTTTAA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAA
** * * * * *
66804820 CACCGATACCATATCCCAGATATGGTCTTACACTGGCTTACACATCAA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAA
* * * * * * * *
66804868 TCCCGATGCCATGTCCTAGATATGGTCTTATACGGGGTCTCATATCGA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAA
66804916 TGCCGATGCCATGTCCCAGACATGGTCTTACAC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACAC
66804949 GGGACCTTAT
Statistics
Matches: 231, Mismatches: 42, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 231 1.00
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (48 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAA
Found at i:66812013 original size:33 final size:33
Alignment explanation
Indices: 66811975--66812042 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
66811965 CAAGTTGACA
66811975 GATCCATTTATTTATAAACTATTAGTATGCTTT
1 GATCCATTTATTTATAAACTATTAGTATGCTTT
66812008 GATCCATTTATTTATAAACTATTAGTATGCTTT
1 GATCCATTTATTTATAAACTATTAGTATGCTTT
66812041 GA
1 GA
66812043 ATATTGAGTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.31, C:0.12, G:0.10, T:0.47
Consensus pattern (33 bp):
GATCCATTTATTTATAAACTATTAGTATGCTTT
Found at i:66815774 original size:57 final size:58
Alignment explanation
Indices: 66815713--66815824 Score: 163
Period size: 58 Copynumber: 1.9 Consensus size: 58
66815703 AAATTCACAT
* *
66815713 ACCTGTATTTGGCCCATTAAGCCC-AATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
* * * *
66815770 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATGGCTCGTTAGGCCCAA
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAA
66815825 CCACATTCAA
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 22 0.46
58 26 0.54
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.28
Consensus pattern (58 bp):
ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:66815779 original size:29 final size:29
Alignment explanation
Indices: 66815716--66815824 Score: 132
Period size: 29 Copynumber: 3.8 Consensus size: 29
66815706 TTCACATACC
* * *
66815716 TGTATTTGGCCCATTAAGCCC-AATCATA
1 TGTATATGGCCCATTAGGCCCAAATCACA
*
66815744 T-TCATATGGCCCATTAGGCCCAAATCACC
1 TGT-ATATGGCCCATTAGGCCCAAATCACA
66815773 TGTATATGGCCCATTAGGCCCAAATCACA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* * *
66815802 TTTATATGGCTCGTTAGGCCCAA
1 TGTATATGGCCCATTAGGCCCAA
66815825 CCACATTCAA
Statistics
Matches: 70, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
27 1 0.01
28 17 0.24
29 51 0.73
30 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.28
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACA
Found at i:66817369 original size:16 final size:16
Alignment explanation
Indices: 66817348--66817379 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
66817338 ATGTTTGGGA
66817348 TTTCAGGATTTTTGAG
1 TTTCAGGATTTTTGAG
66817364 TTTCAGGATTTTTGAG
1 TTTCAGGATTTTTGAG
66817380 GCGTTACAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.06, G:0.25, T:0.50
Consensus pattern (16 bp):
TTTCAGGATTTTTGAG
Found at i:66820103 original size:29 final size:28
Alignment explanation
Indices: 66820015--66820118 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 28
66820005 GGTCGACTAA
* *
66820015 GCCCAATCATATTCATATGGCCCATTAG
1 GCCCAATCACATTTATATGGCCCATTAG
* * * *
66820043 GCACAAATCACCTGTATATGGCCCATTGG
1 GC-CCAATCACATTTATATGGCCCATTAG
*
66820072 GCCCAAATCACATTTATGTGGCCCATTAG
1 GCCC-AATCACATTTATATGGCCCATTAG
* *
66820101 GCCCAGTCACATTCATAT
1 GCCCAATCACATTTATAT
66820119 TCATGCTCAC
Statistics
Matches: 60, Mismatches: 14, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
28 14 0.23
29 46 0.77
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (28 bp):
GCCCAATCACATTTATATGGCCCATTAG
Found at i:66821607 original size:16 final size:16
Alignment explanation
Indices: 66821586--66821618 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
66821576 GAAAGTTCGA
66821586 GATTTCAAGATTTTTG
1 GATTTCAAGATTTTTG
*
66821602 GATTTCGAGATTTTTG
1 GATTTCAAGATTTTTG
66821618 G
1 G
66821619 GGTGTTACAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.06, G:0.24, T:0.48
Consensus pattern (16 bp):
GATTTCAAGATTTTTG
Found at i:66823932 original size:40 final size:40
Alignment explanation
Indices: 66823845--66824062 Score: 264
Period size: 40 Copynumber: 5.5 Consensus size: 40
66823835 TAGATGATAA
* * *
66823845 CCGGGCTGAGTCCCGAAGGCATTTTGTGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCA-TTTGTGCGAGTTACTA-TAT
* * * *
66823886 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
66823926 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
66823966 CCGGACTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
66824006 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
66824045 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
66824063 TACTTGGCTT
Statistics
Matches: 155, Mismatches: 20, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
38 15 0.10
39 15 0.10
40 106 0.68
41 19 0.12
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:66828171 original size:9 final size:9
Alignment explanation
Indices: 66828151--66828184 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
66828141 AACTATGTTG
66828151 TTGTGATATT
1 TTGTG-TATT
66828161 TTGTGTATT
1 TTGTGTATT
*
66828170 TTGTGCATT
1 TTGTGTATT
66828179 TTGTGT
1 TTGTGT
66828185 TTTATGCAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 17 0.77
10 5 0.23
ACGTcount: A:0.12, C:0.03, G:0.24, T:0.62
Consensus pattern (9 bp):
TTGTGTATT
Found at i:66848497 original size:46 final size:47
Alignment explanation
Indices: 66848390--66848547 Score: 175
Period size: 46 Copynumber: 3.4 Consensus size: 47
66848380 GGTTATTATG
* *
66848390 AGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGA-G-ATGA
1 AGCCAGTGTAAGACCATGTTTGGGACAT-GCATCGGCCTCGAGGCAT-A
* * *
66848437 GAGCTAATGTAAGA-CATGTTTGGGACATGCATCAGCCTCGAGGCATA
1 -AGCCAGTGTAAGACCATGTTTGGGACATGCATCGGCCTCGAGGCATA
* *
66848484 AGCCAGTGTAAGA-CATGTCTT-GGACATGCAT-GGCCTCAAGACATA
1 AGCCAGTGTAAGACCATGT-TTGGGACATGCATCGGCCTCGAGGCATA
66848529 AGCCAGTGTAAGACCATGT
1 AGCCAGTGTAAGACCATGT
66848548 CTAGAACATG
Statistics
Matches: 96, Mismatches: 10, Indels: 10
0.83 0.09 0.09
Matches are distributed among these distances:
45 24 0.25
46 41 0.43
47 18 0.19
48 13 0.14
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.23
Consensus pattern (47 bp):
AGCCAGTGTAAGACCATGTTTGGGACATGCATCGGCCTCGAGGCATA
Found at i:66848548 original size:46 final size:47
Alignment explanation
Indices: 66848444--66848661 Score: 169
Period size: 46 Copynumber: 4.6 Consensus size: 47
66848434 TGAGAGCTAA
* * * *
66848444 TGTAAGA-CATGTTTGGGACATGCATCAGCCTCGAGGCATAAGCCAG
1 TGTAAGACCATGTCTAGGACATGCATCAGCCTCAAGACATAAGCCAG
* *
66848490 TGTAAGA-CATGTCTTGGACATGCAT-GGCCTCAAGACATAAGCCAG
1 TGTAAGACCATGTCTAGGACATGCATCAGCCTCAAGACATAAGCCAG
* * * * *
66848535 TGTAAGACCATGTCTAGAACATGGCATTAG-CACAA-ATATGTGAGAGCTAG
1 TGTAAGACCATGTCTAGGACAT-GCATCAGCCTCAAGACA--T-A-AGCCAG
* * * * *
66848585 TGTAAGACCATGTCTGGGACATGACGTCGGCCTCGATGACGAT-AGTCAG
1 TGTAAGACCATGTCTAGGACATG-CATCAGCCTC-AAGAC-ATAAGCCAG
66848634 TGTAAGACCATGTCTAGGACATGGCATC
1 TGTAAGACCATGTCTAGGACAT-GCATC
66848662 GGCATTCTAC
Statistics
Matches: 136, Mismatches: 23, Indels: 23
0.75 0.13 0.13
Matches are distributed among these distances:
45 24 0.18
46 37 0.27
47 8 0.06
48 2 0.01
49 30 0.22
50 29 0.21
51 2 0.01
52 2 0.01
53 1 0.01
54 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.23
Consensus pattern (47 bp):
TGTAAGACCATGTCTAGGACATGCATCAGCCTCAAGACATAAGCCAG
Found at i:66854585 original size:28 final size:28
Alignment explanation
Indices: 66854545--66854637 Score: 152
Period size: 28 Copynumber: 3.3 Consensus size: 28
66854535 ATGTACTAGA
*
66854545 ATACCCCTATGTATGCAAAATTATCATT
1 ATACCCCTATGTATGCAAAATTACCATT
66854573 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
*
66854601 ATACCCCTATGTATGCAAAATGACC-TCT
1 ATACCCCTATGTATGCAAAATTACCAT-T
66854629 ATACCCCTA
1 ATACCCCTA
66854638 GGGTTAATTT
Statistics
Matches: 62, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
27 1 0.02
28 61 0.98
ACGTcount: A:0.34, C:0.27, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATTACCATT
Found at i:66854785 original size:27 final size:29
Alignment explanation
Indices: 66854743--66854804 Score: 74
Period size: 27 Copynumber: 2.2 Consensus size: 29
66854733 AGGAAGCGTC
* **
66854743 CTGGTGGCCCTACCAC-GTATATCTGT-T
1 CTGGTGGCACTACCACAAAATATCTGTAT
*
66854770 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTACCACAAAATATCTGTAT
66854799 CTGGTG
1 CTGGTG
66854805 ACTCTGTCAC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 14 0.48
28 8 0.28
29 7 0.24
ACGTcount: A:0.19, C:0.26, G:0.24, T:0.31
Consensus pattern (29 bp):
CTGGTGGCACTACCACAAAATATCTGTAT
Found at i:66854815 original size:29 final size:28
Alignment explanation
Indices: 66854761--66854815 Score: 74
Period size: 29 Copynumber: 1.9 Consensus size: 28
66854751 CCTACCACGT
*
66854761 ATATCTGTTCTGGTGGCACTGCCACAAA
1 ATATCTGTTCTGGTGACACTGCCACAAA
* *
66854789 ATATCTGTATCTGGTGACTCTGTCACA
1 ATATCTGT-TCTGGTGACACTGCCACA
66854816 TTTTCTGTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 8 0.35
29 15 0.65
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.33
Consensus pattern (28 bp):
ATATCTGTTCTGGTGACACTGCCACAAA
Found at i:66855290 original size:19 final size:19
Alignment explanation
Indices: 66855268--66855306 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
66855258 TTTGAATTAT
* *
66855268 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
66855287 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
66855306 T
1 T
66855307 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:66862459 original size:28 final size:28
Alignment explanation
Indices: 66862416--66862508 Score: 143
Period size: 28 Copynumber: 3.3 Consensus size: 28
66862406 ATGTACTAGA
*
66862416 ATACCCCTATGTATGCAAAATTATCATT
1 ATACCCCTATGTATGCAAAATTACCATT
*
66862444 ATACCCCTATGCATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
*
66862472 ATACCCCTATGTATGCAAAATGACC-TCT
1 ATACCCCTATGTATGCAAAATTACCAT-T
66862500 ATACCCCTA
1 ATACCCCTA
66862509 GGGTTAATTT
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
27 1 0.02
28 59 0.98
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.30
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATTACCATT
Found at i:66862655 original size:28 final size:27
Alignment explanation
Indices: 66862614--66862674 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 27
66862604 AGGAAGCGTC
*
66862614 CTGGTGGCTATGCCACAAATTATCTGTT
1 CTGGTGGCCATGCCACAAA-TATCTGTT
* **
66862642 CTGGTGGCCCTGCCACGTATATCTGTT
1 CTGGTGGCCATGCCACAAATATCTGTT
66862669 CTGGTG
1 CTGGTG
66862675 ACTCTGTCAC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
27 14 0.48
28 15 0.52
ACGTcount: A:0.15, C:0.25, G:0.26, T:0.34
Consensus pattern (27 bp):
CTGGTGGCCATGCCACAAATATCTGTT
Found at i:66863162 original size:19 final size:19
Alignment explanation
Indices: 66863138--66863176 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
66863128 TTTTAATTAT
* *
66863138 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
66863157 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
66863176 T
1 T
66863177 ATGATAAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:66866654 original size:13 final size:13
Alignment explanation
Indices: 66866636--66866662 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
66866626 TCAGCAACAG
66866636 CATTAGCCTTTCC
1 CATTAGCCTTTCC
66866649 CATTAGCCTTTCC
1 CATTAGCCTTTCC
66866662 C
1 C
66866663 GGGTGATAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.41, G:0.07, T:0.37
Consensus pattern (13 bp):
CATTAGCCTTTCC
Found at i:66872836 original size:43 final size:42
Alignment explanation
Indices: 66872691--66872850 Score: 205
Period size: 42 Copynumber: 3.8 Consensus size: 42
66872681 TTAGGGTTAC
* * **
66872691 TGAGATTACGTGCAAGACCATATCTGGGATATGGAATTTATA
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATA
*
66872733 TGAGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATA
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATA
* * *
66872775 TGAGACTT-CGTGTGAGACCATAGCTGGGCTATTGGCATCGATA
1 TGAGA-TTACGTGTAAGACCATATCTGGGATA-TGGCATCGATA
* *
66872818 CGAGATTACATGTAAGACCATATCTGGGATATG
1 TGAGATTACGTGTAAGACCATATCTGGGATATG
66872851 TCATTGTTAC
Statistics
Matches: 102, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
42 66 0.65
43 36 0.35
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.29
Consensus pattern (42 bp):
TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:66875150 original size:27 final size:27
Alignment explanation
Indices: 66875112--66875164 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
66875102 ATATATACGA
*
66875112 CATATAGGGGCAAAACAGTCATCTTAC
1 CATATAAGGGCAAAACAGTCATCTTAC
66875139 CATATAAGGGCAAAACAGTCATCTTA
1 CATATAAGGGCAAAACAGTCATCTTA
66875165 TCATTCATAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.40, C:0.21, G:0.17, T:0.23
Consensus pattern (27 bp):
CATATAAGGGCAAAACAGTCATCTTAC
Found at i:66875407 original size:17 final size:18
Alignment explanation
Indices: 66875370--66875410 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
66875360 CCAATAATTT
*
66875370 CCACATGCCCATGTAGGGC
1 CCACAAGCCCATG-AGGGC
66875389 CCACAAGCCCATG-GGGC
1 CCACAAGCCCATGAGGGC
66875406 CCACA
1 CCACA
66875411 CGGTACAACT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 9 0.43
19 12 0.57
ACGTcount: A:0.24, C:0.41, G:0.24, T:0.10
Consensus pattern (18 bp):
CCACAAGCCCATGAGGGC
Found at i:66883182 original size:20 final size:19
Alignment explanation
Indices: 66883135--66883182 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
66883125 AGTAAGCTCG
66883135 GTTGAGCTCAAATGAGCTA
1 GTTGAGCTCAAATGAGCTA
***
66883154 AAAGAAGCTCAAATGAGCTGA
1 GTTG-AGCTCAAATGAGCT-A
66883175 GTTGAGCT
1 GTTGAGCT
66883183 GGACAGAGCT
Statistics
Matches: 21, Mismatches: 6, Indels: 3
0.70 0.20 0.10
Matches are distributed among these distances:
19 1 0.05
20 18 0.86
21 2 0.10
ACGTcount: A:0.35, C:0.15, G:0.27, T:0.23
Consensus pattern (19 bp):
GTTGAGCTCAAATGAGCTA
Found at i:66884076 original size:22 final size:22
Alignment explanation
Indices: 66884048--66884100 Score: 97
Period size: 22 Copynumber: 2.4 Consensus size: 22
66884038 GTGCCAAAGG
*
66884048 CACACGGGTGTGTCCCTATGTC
1 CACACGGGCGTGTCCCTATGTC
66884070 CACACGGGCGTGTCCCTATGTC
1 CACACGGGCGTGTCCCTATGTC
66884092 CACACGGGC
1 CACACGGGC
66884101 ATGTGACCCT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.15, C:0.36, G:0.28, T:0.21
Consensus pattern (22 bp):
CACACGGGCGTGTCCCTATGTC
Found at i:66885876 original size:14 final size:15
Alignment explanation
Indices: 66885851--66885889 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
66885841 GGTATCATGA
66885851 TTGGATTTTCTT-GTT
1 TTGGA-TTTCTTCGTT
66885866 TTGGATTTCTTCGTT
1 TTGGATTTCTTCGTT
*
66885881 ATGGATTTC
1 TTGGATTTC
66885890 CTTACCGTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 6 0.27
15 16 0.73
ACGTcount: A:0.10, C:0.10, G:0.21, T:0.59
Consensus pattern (15 bp):
TTGGATTTCTTCGTT
Found at i:66892385 original size:15 final size:15
Alignment explanation
Indices: 66892365--66892393 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
66892355 ACAATTTTGA
66892365 AATAAAACGTACCTT
1 AATAAAACGTACCTT
66892380 AATAAAACGTACCT
1 AATAAAACGTACCT
66892394 GGTCTACTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.21, G:0.07, T:0.24
Consensus pattern (15 bp):
AATAAAACGTACCTT
Found at i:66896655 original size:15 final size:15
Alignment explanation
Indices: 66896635--66896666 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
66896625 AAATAATAAT
*
66896635 TTATATATATTTATC
1 TTATATACATTTATC
66896650 TTATATACATTTATC
1 TTATATACATTTATC
66896665 TT
1 TT
66896667 CTAAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.59
Consensus pattern (15 bp):
TTATATACATTTATC
Found at i:66897533 original size:14 final size:14
Alignment explanation
Indices: 66897507--66897551 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
66897497 TAAACCTGCT
*
66897507 TAAACCCTAAACCA
1 TAAACCTTAAACCA
* *
66897521 TATATCTTAAACCA
1 TAAACCTTAAACCA
*
66897535 TAAACCTTAAACTA
1 TAAACCTTAAACCA
66897549 TAA
1 TAA
66897552 TGATAATTAA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.49, C:0.24, G:0.00, T:0.27
Consensus pattern (14 bp):
TAAACCTTAAACCA
Found at i:66897803 original size:40 final size:40
Alignment explanation
Indices: 66897709--66897844 Score: 209
Period size: 40 Copynumber: 3.4 Consensus size: 40
66897699 GTTATATGAC
** *
66897709 TTTTAGCGGCAATTGACCAAAAGCGCAGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCAGCTAATGCTCT-GT
*
66897750 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCAGCTAATGCTCTGT
*
66897790 TTTTAGCAGCGTTTTACCAAAAGCGCAGCTAATGCTCTGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCAGCTAATGCTCTGT
*
66897830 TTTTAGTGGCGTTTT
1 TTTTAGCGGCGTTTT
66897845 TTGATAAAAC
Statistics
Matches: 87, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
40 53 0.61
41 34 0.39
ACGTcount: A:0.22, C:0.21, G:0.23, T:0.34
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCAGCTAATGCTCTGT
Found at i:66901842 original size:35 final size:35
Alignment explanation
Indices: 66901802--66901962 Score: 153
Period size: 35 Copynumber: 4.6 Consensus size: 35
66901792 GTATATACAT
* * *
66901802 ATGTGATGATATATTTAATTTGTATATTTGGCCAC
1 ATGTGATGATATATTGAACTTGTATATTTGACCAC
** * * *
66901837 ATGTGATTTTATATTAAACTTGAATATTTGACTAC
1 ATGTGATGATATATTGAACTTGTATATTTGACCAC
* * * * * *
66901872 ATGTGATGTTTTATTGAGCTTGTATATTCGATCAT
1 ATGTGATGATATATTGAACTTGTATATTTGACCAC
* *
66901907 ATATGATGATATATTGAACTTGTATATTTCG-CCAT
1 ATGTGATGATATATTGAACTTGTATATTT-GACCAC
*
66901942 ATGTGATGATATAATGAACTT
1 ATGTGATGATATATTGAACTT
66901963 TGAGTATTCA
Statistics
Matches: 101, Mismatches: 24, Indels: 2
0.80 0.19 0.02
Matches are distributed among these distances:
35 100 0.99
36 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.16, T:0.45
Consensus pattern (35 bp):
ATGTGATGATATATTGAACTTGTATATTTGACCAC
Found at i:66905980 original size:25 final size:25
Alignment explanation
Indices: 66905951--66905998 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
66905941 TTATAACATG
* * *
66905951 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
66905976 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
66905999 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:66906144 original size:23 final size:23
Alignment explanation
Indices: 66906112--66906206 Score: 156
Period size: 23 Copynumber: 4.1 Consensus size: 23
66906102 AGGAAGTGAA
66906112 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
66906135 ATAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
66906158 AAAGGGCTTATG-CCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
66906180 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
66906204 AAA
1 AAA
66906207 AGAGGTTGGG
Statistics
Matches: 67, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
22 10 0.15
23 47 0.70
24 10 0.15
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:66906457 original size:31 final size:31
Alignment explanation
Indices: 66906421--66906484 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
66906411 CGTTTACAGT
*
66906421 AAAGGCTTCGGCCTAGAAATATGAAATATGA
1 AAAGGCTTCGGCCCAGAAATATGAAATATGA
***
66906452 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGAAATATGAAATATGA
66906483 AA
1 AA
66906485 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.39, C:0.14, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGAAATATGAAATATGA
Found at i:66911684 original size:27 final size:27
Alignment explanation
Indices: 66911642--66911710 Score: 102
Period size: 27 Copynumber: 2.6 Consensus size: 27
66911632 GTAGGCTAGT
* *
66911642 ATTACTAAAATACCCCTATATGGTAGA
1 ATTACTAAAATACCCCTATAAGGTAAA
* *
66911669 ATTACTGAAATGCCCCTATAAGGTAAA
1 ATTACTAAAATACCCCTATAAGGTAAA
66911696 ATTACTAAAATACCC
1 ATTACTAAAATACCC
66911711 TTGGTTTACA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.42, C:0.20, G:0.10, T:0.28
Consensus pattern (27 bp):
ATTACTAAAATACCCCTATAAGGTAAA
Found at i:66911723 original size:27 final size:27
Alignment explanation
Indices: 66911693--66912069 Score: 205
Period size: 27 Copynumber: 14.0 Consensus size: 27
66911683 CCTATAAGGT
* *
66911693 AAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACTAAAATACCCTTGATTTGC
* * *
66911720 AAAATTACT-GAATACCCTTGGTTTAC
1 AAAATTACTAAAATACCCTTGATTTGC
* * * *
66911746 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACTAAAATACCCTTGATTTGC
* * *
66911773 AAAATTA-TCAAATTACCCCTGATTTGT
1 AAAATTACT-AAAATACCCTTGATTTGC
* * ** * *
66911800 GAAATTTCTAAAATACTTTTGACTTGT
1 AAAATTACTAAAATACCCTTGATTTGC
* * * *
66911827 AAAATTAAC-GAAATA-CCTTCAACTTGT
1 AAAATT-ACTAAAATACCCTT-GATTTGC
* * * **
66911854 AAAATTACTGAAATACTCTCGATTTTT
1 AAAATTACTAAAATACCCTTGATTTGC
* * * *
66911881 AAAATTACCAAAATACCCCTAATTTGG
1 AAAATTACTAAAATACCCTTGATTTGC
* *
66911908 AAAATTA-TAGAAATACCCCTGATTTAC
1 AAAATTACTA-AAATACCCTTGATTTGC
* * *
66911935 AAAATTATTGAAATACCCTTGATTTGG
1 AAAATTACTAAAATACCCTTGATTTGC
* * * * *
66911962 AAAGTTACAAAAATACCCCTAATTTAC
1 AAAATTACTAAAATACCCTTGATTTGC
66911989 AAAATTAC-AGAAATACCCTTGACTTT-C
1 AAAATTACTA-AAATACCCTTGA-TTTGC
* *
66912016 AAAAATTAC-AGAAATACCATTGGTTTGC
1 -AAAATTACTA-AAATACCCTTGATTTGC
* *
66912044 AAAATTA-TCGAAATACCCTTGGTTTG
1 AAAATTACT-AAAATACCCTTGATTTG
66912070 GGGATTTACC
Statistics
Matches: 277, Mismatches: 58, Indels: 30
0.76 0.16 0.08
Matches are distributed among these distances:
26 30 0.11
27 218 0.79
28 29 0.10
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.33
Consensus pattern (27 bp):
AAAATTACTAAAATACCCTTGATTTGC
Found at i:66912219 original size:20 final size:20
Alignment explanation
Indices: 66912196--66912240 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
66912186 GACTATGTTT
66912196 TGATTGAGAATG-TATGACTG
1 TGATTG-GAATGTTATGACTG
* *
66912216 TGATTGGACTGTTGTGACTG
1 TGATTGGAATGTTATGACTG
66912236 TGATT
1 TGATT
66912241 TGTATGATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 4 0.18
20 18 0.82
ACGTcount: A:0.22, C:0.07, G:0.31, T:0.40
Consensus pattern (20 bp):
TGATTGGAATGTTATGACTG
Found at i:66912370 original size:41 final size:41
Alignment explanation
Indices: 66912325--66912490 Score: 210
Period size: 41 Copynumber: 4.0 Consensus size: 41
66912315 CGGAGGAAGA
* *
66912325 ATTGAGGATCGCATAGTTGCTTGATGAACGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGAACGTGGATCCACCG
* *
66912366 ATTGAGAATCGCATGGTTTCTTGACG-ACTGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGAAC-GTGGATCCACCG
* * * *
66912407 A-TGAATGATCGCATGGTTGCTTGATGACCGTGGATCCACTG
1 ATTG-AGGATCGCATGGTTGCTTGACGAACGTGGATCCACCG
* *
66912448 ATTAAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGAACGTGGATCCACCG
66912489 AT
1 AT
66912491 GGGTTTTAAG
Statistics
Matches: 107, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
40 4 0.04
41 101 0.94
42 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (41 bp):
ATTGAGGATCGCATGGTTGCTTGACGAACGTGGATCCACCG
Found at i:66912471 original size:82 final size:82
Alignment explanation
Indices: 66912331--66912491 Score: 259
Period size: 82 Copynumber: 2.0 Consensus size: 82
66912321 AAGAATTGAG
* * *
66912331 GATCGCATAGTTGCTTGATGAACGTGGATCCACCGATTGAGAATCGCATGGTTTCTTGACGACTG
1 GATCGCATAGTTGCTTGATGAACGTGGATCCACCGATTAAGAATCGCATGGTTGCTTGACGACCG
66912396 TGGATCCACCGATGAAT
66 TGGATCCACCGATGAAT
* * * *
66912413 GATCGCATGGTTGCTTGATGACCGTGGATCCACTGATTAAGGATCGCATGGTTGCTTGACGACCG
1 GATCGCATAGTTGCTTGATGAACGTGGATCCACCGATTAAGAATCGCATGGTTGCTTGACGACCG
66912478 TGGATCCACCGATG
66 TGGATCCACCGATG
66912492 GGTTTTAAGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
82 72 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (82 bp):
GATCGCATAGTTGCTTGATGAACGTGGATCCACCGATTAAGAATCGCATGGTTGCTTGACGACCG
TGGATCCACCGATGAAT
Found at i:66914514 original size:20 final size:22
Alignment explanation
Indices: 66914464--66914514 Score: 61
Period size: 23 Copynumber: 2.4 Consensus size: 22
66914454 GAATATAGAA
* *
66914464 ATTGTATGCTTGTGTGGTAAAT
1 ATTGTTTGCTTCTGTGGTAAAT
66914486 ATTTGTTTGCTTCTGTGGT-AAT
1 A-TTGTTTGCTTCTGTGGTAAAT
66914508 A-TGTTTG
1 ATTGTTTG
66914515 GTTGGGTATG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
20 6 0.23
22 5 0.19
23 15 0.58
ACGTcount: A:0.18, C:0.06, G:0.25, T:0.51
Consensus pattern (22 bp):
ATTGTTTGCTTCTGTGGTAAAT
Found at i:66914701 original size:15 final size:15
Alignment explanation
Indices: 66914683--66914720 Score: 76
Period size: 15 Copynumber: 2.5 Consensus size: 15
66914673 TGCCCCGAAT
66914683 TTGGGCCTAGAAGTA
1 TTGGGCCTAGAAGTA
66914698 TTGGGCCTAGAAGTA
1 TTGGGCCTAGAAGTA
66914713 TTGGGCCT
1 TTGGGCCT
66914721 TGAGTATGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.21, C:0.16, G:0.34, T:0.29
Consensus pattern (15 bp):
TTGGGCCTAGAAGTA
Found at i:66916972 original size:39 final size:40
Alignment explanation
Indices: 66916826--66916988 Score: 181
Period size: 40 Copynumber: 4.1 Consensus size: 40
66916816 CAAAATTTAA
* * *
66916826 CCGGATATAGCT-ACTCGCTCGAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACCAATGCCTTCGGGACTTAGC
* *
66916866 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGC
* *
66916906 CCGGATATAATAACTCGGA-CAATTGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACCAA-TGCCTTCGGGACTTAGC
* * *
66916945 CCGGA-ATTAGTCACTAGCACCAATGCCTTCTGGACTTAGC
1 CCGGATA-TAGTAACTCGCACCAATGCCTTCGGGACTTAGC
66916985 CCGG
1 CCGG
66916989 TTATCATCCG
Statistics
Matches: 105, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
38 1 0.01
39 31 0.30
40 73 0.70
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGC
Found at i:66917580 original size:21 final size:21
Alignment explanation
Indices: 66917556--66917595 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
66917546 ACATATAAAT
*
66917556 TGCA-TACATTTTACTAACTAA
1 TGCATTACATATTA-TAACTAA
66917577 TGCATTACATATTATAACT
1 TGCATTACATATTATAACT
66917596 CAATACGCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.38, C:0.17, G:0.05, T:0.40
Consensus pattern (21 bp):
TGCATTACATATTATAACTAA
Found at i:66919035 original size:27 final size:27
Alignment explanation
Indices: 66918996--66919073 Score: 102
Period size: 27 Copynumber: 2.9 Consensus size: 27
66918986 TTCATATCTG
* *
66918996 TAGGCTAGTATTACTGAAATACCCCTA
1 TAGGGTAGAATTACTGAAATACCCCTA
* * *
66919023 TAGGGTAGAATTACTAAAATGCCGCTA
1 TAGGGTAGAATTACTGAAATACCCCTA
*
66919050 TAGGGTAGAATTATTGAAATACCC
1 TAGGGTAGAATTACTGAAATACCC
66919074 TTGGTTTACA
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (27 bp):
TAGGGTAGAATTACTGAAATACCCCTA
Found at i:66919101 original size:26 final size:27
Alignment explanation
Indices: 66919058--66919131 Score: 96
Period size: 26 Copynumber: 2.8 Consensus size: 27
66919048 TATAGGGTAG
* *
66919058 AATTATTGAAATACCCTTGGTTTACAA
1 AATTACTGAAATACCCTTGGTATACAA
66919085 AATTACTG-AATACCCTTGGTATACAA
1 AATTACTGAAATACCCTTGGTATACAA
** *
66919111 AATTACCAAAATACCCCTGGT
1 AATTACTGAAATACCCTTGGT
66919132 TTGTAAAATT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
26 23 0.56
27 18 0.44
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (27 bp):
AATTACTGAAATACCCTTGGTATACAA
Found at i:66919431 original size:27 final size:27
Alignment explanation
Indices: 66919066--66919431 Score: 220
Period size: 27 Copynumber: 13.6 Consensus size: 27
66919056 AGAATTATTG
* * *
66919066 AAATACCCTTGGTTTACAAAATTA-CT
1 AAATACCCTTGATTTGCAAAATTACCA
* * * *
66919092 GAATACCCTTGGTATACAAAATTACCA
1 AAATACCCTTGATTTGCAAAATTACCA
* * * *
66919119 AAATACCCCTGGTTTGTAAAATTATCA
1 AAATACCCTTGATTTGCAAAATTACCA
* * *** * *
66919146 AAATACCCCTAATTTTTGAAATTGCTA
1 AAATACCCTTGATTTGCAAAATTACCA
* ** * *
66919173 AAATACCCTCGACCTGTAAAATTACCG
1 AAATACCCTTGATTTGCAAAATTACCA
** * * * *
66919200 AAATACCCACGACTTGTAAAATTATCG
1 AAATACCCTTGATTTGCAAAATTACCA
* *
66919227 AAATACCCTCGATTTGTAAAATTACCA
1 AAATACCCTTGATTTGCAAAATTACCA
* * * *
66919254 AAATACCCCTAATTTGGAAAATTA-TA
1 AAATACCCTTGATTTGCAAAATTACCA
* **
66919280 GAAATA-CCTCTGATTTACAAAATTACTG
1 -AAATACCCT-TGATTTGCAAAATTACCA
* * *
66919308 AAATACCCTTGATTTGGAAAGTTACAA
1 AAATACCCTTGATTTGCAAAATTACCA
* * *
66919335 AAATACCC-TAATTTACAAAATTACAA
1 AAATACCCTTGATTTGCAAAATTACCA
*
66919361 AAATACCCTTGACTTT-CAAAAATTACAA
1 AAATACCCTTGA-TTTGC-AAAATTACCA
* * *
66919389 AAATACCATTGGTTTGCAAAATTACCG
1 AAATACCCTTGATTTGCAAAATTACCA
*
66919416 AAATACCCTTGGTTTG
1 AAATACCCTTGATTTG
66919432 TGGATTTACC
Statistics
Matches: 273, Mismatches: 58, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
26 47 0.17
27 198 0.73
28 28 0.10
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (27 bp):
AAATACCCTTGATTTGCAAAATTACCA
Found at i:66921901 original size:35 final size:35
Alignment explanation
Indices: 66921861--66922019 Score: 167
Period size: 35 Copynumber: 4.5 Consensus size: 35
66921851 GTATTTACAT
66921861 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * * * *
66921896 ATGTGATGTTATATTAAACTTGAATATTTGACTAC
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * * * *
66921931 ATGTGAT-ATTTTATTGAGCTTGTATATTCGGTCAT
1 ATGTGATGA-TATATTGAACTTGTATATTTGGCCAC
* ** *
66921966 ATATGATGATATATTTTACTTGTATATTTGGCCAT
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
*
66922001 ATGTGATGATATAATGAAC
1 ATGTGATGATATATTGAAC
66922020 CTTAAGTATT
Statistics
Matches: 96, Mismatches: 26, Indels: 4
0.76 0.21 0.03
Matches are distributed among these distances:
35 95 0.99
36 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.18, T:0.43
Consensus pattern (35 bp):
ATGTGATGATATATTGAACTTGTATATTTGGCCAC
Found at i:66923450 original size:16 final size:16
Alignment explanation
Indices: 66923429--66923460 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
66923419 AATGAGTTAA
66923429 TTTTGAATACATGTAG
1 TTTTGAATACATGTAG
66923445 TTTTGAATACATGTAG
1 TTTTGAATACATGTAG
66923461 ATTAAGAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.06, G:0.19, T:0.44
Consensus pattern (16 bp):
TTTTGAATACATGTAG
Found at i:66925507 original size:28 final size:27
Alignment explanation
Indices: 66925445--66925653 Score: 305
Period size: 27 Copynumber: 7.7 Consensus size: 27
66925435 GGGTTTAAAT
* *
66925445 TATGCAGCACTAAGTGTGCGAATTGAC
1 TATGTAGCACTAAGTGTGCGAGTTGAC
66925472 TATGTAGCACTAAGTGTGCGAGTTTGAC
1 TATGTAGCACTAAGTGTGCGAG-TTGAC
*
66925500 TATGTAGCACTAAGTGTGCGAATTGAC
1 TATGTAGCACTAAGTGTGCGAGTTGAC
*
66925527 TATGTAGCACTAAGTGTACGAGTTTGAC
1 TATGTAGCACTAAGTGTGCGAG-TTGAC
*
66925555 TATGTAGTACTAAGTGTGCGAGTTGAC
1 TATGTAGCACTAAGTGTGCGAGTTGAC
*
66925582 TATG--GCACTAAGTGTGCGAGTTGAT
1 TATGTAGCACTAAGTGTGCGAGTTGAC
*
66925607 TATGTAGCACTAAGTGTGCGAGTTGAT
1 TATGTAGCACTAAGTGTGCGAGTTGAC
* *
66925634 TATATAGCACTGAGTGTGCG
1 TATGTAGCACTAAGTGTGCG
66925654 GACTTAATAT
Statistics
Matches: 167, Mismatches: 11, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
25 23 0.14
27 93 0.56
28 51 0.31
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (27 bp):
TATGTAGCACTAAGTGTGCGAGTTGAC
Found at i:66925514 original size:55 final size:55
Alignment explanation
Indices: 66925445--66925653 Score: 316
Period size: 55 Copynumber: 3.9 Consensus size: 55
66925435 GGGTTTAAAT
*
66925445 TATGCAGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGAC
1 TATGTAGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGAC
*
66925500 TATGTAGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTACGAGTTTGAC
1 TATGTAGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGAC
* * *
66925555 TATGTAGTACTAAGTGTGCGAGTTGACTATG--GCACTAAGTGTGCGAG-TTGAT
1 TATGTAGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGAC
* * * *
66925607 TATGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 TATGTAGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCG
66925654 GACTTAATAT
Statistics
Matches: 142, Mismatches: 10, Indels: 5
0.90 0.06 0.03
Matches are distributed among these distances:
52 32 0.23
53 15 0.11
54 13 0.09
55 82 0.58
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (55 bp):
TATGTAGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGAC
Found at i:66933663 original size:27 final size:27
Alignment explanation
Indices: 66933628--66933834 Score: 297
Period size: 27 Copynumber: 7.6 Consensus size: 27
66933618 TAAATTGTGC
*
66933628 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
66933655 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
66933683 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
66933710 AGCACTAAGTGTACGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
66933738 AGTACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
66933765 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * *
66933793 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
66933820 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
66933835 GACTTAATAT
Statistics
Matches: 164, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
27 89 0.54
28 75 0.46
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:66933695 original size:55 final size:55
Alignment explanation
Indices: 66933628--66933834 Score: 342
Period size: 55 Copynumber: 3.8 Consensus size: 55
66933618 TAAATTGTGC
66933628 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
66933683 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTACGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
66933738 AGTACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * * *
66933793 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCG
66933835 GACTTAATAT
Statistics
Matches: 143, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
55 143 1.00
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:66957928 original size:44 final size:42
Alignment explanation
Indices: 66957877--66958036 Score: 146
Period size: 43 Copynumber: 3.7 Consensus size: 42
66957867 ATATGTGTTA
* * *
66957877 TCGTGTAAGACCACATTTGGGACGTTGGCATCG-ACTTATGATT
1 TCGTGTAAGACCACATCTGAGACATTGGCATCGTA-TT-TGATT
66957920 TACGTGTAAGACCACATCTGAGACATTGGCATCGTATTTGATT
1 T-CGTGTAAGACCACATCTGAGACATTGGCATCGTATTTGATT
* * *
66957963 TCGTGTAAGACC-CTGTCT-AGGACAGTGGCATTGATATTTGATT
1 TCGTGTAAGACCAC-ATCTGA-GACATTGGCATCG-TATTTGATT
* * ** *
66958006 ACATGTAAGACCATGTCTGGGACATTGGCAT
1 TCGTGTAAGACCACATCTGAGACATTGGCAT
66958037 TGTACGAGAT
Statistics
Matches: 99, Mismatches: 11, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
41 2 0.02
42 25 0.25
43 40 0.40
44 31 0.31
45 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (42 bp):
TCGTGTAAGACCACATCTGAGACATTGGCATCGTATTTGATT
Found at i:66967934 original size:29 final size:31
Alignment explanation
Indices: 66967896--66967959 Score: 114
Period size: 29 Copynumber: 2.1 Consensus size: 31
66967886 TTTTGTGATT
66967896 AGGGACTAAATTGTCAAAATATG-AAATGTG
1 AGGGACTAAATTGTCAAAATATGAAAATGTG
66967926 AGGG-CTAAATTGTCAAAATATGAAAATGTG
1 AGGGACTAAATTGTCAAAATATGAAAATGTG
66967956 AGGG
1 AGGG
66967960 TTATTTTGTA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 18 0.55
30 15 0.45
ACGTcount: A:0.42, C:0.06, G:0.27, T:0.25
Consensus pattern (31 bp):
AGGGACTAAATTGTCAAAATATGAAAATGTG
Found at i:66968488 original size:43 final size:43
Alignment explanation
Indices: 66968333--66968489 Score: 151
Period size: 43 Copynumber: 3.7 Consensus size: 43
66968323 TGTGTTATCG
* **
66968333 TGTAAGACCACGTCTGGGACGTTGGCATTGACT-TTTGATTTATG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGA-TATTTGA-TTACA
* * *
66968377 TGTAAGACCACGTTTGGGA-GATTAGCATCG-TATTTGATTTCA
1 TGTAAGACCACGTCTGGGACG-TTGGCATCGATATTTGATTACA
** *
66968419 TGTAAGACCTTGTCTAGGACAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCACGTCTGGGAC-GTTGGCATCGATATTTGATTACA
* *
66968462 TGTAAGACCACATTTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
66968490 TGTACGAAAT
Statistics
Matches: 90, Mismatches: 17, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
42 26 0.29
43 38 0.42
44 26 0.29
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACA
Found at i:66976350 original size:43 final size:43
Alignment explanation
Indices: 66976302--66976400 Score: 114
Period size: 42 Copynumber: 2.3 Consensus size: 43
66976292 CGGATGTGGC
* *
66976302 CTTACATGTAATTCA-ATATCGATGCC-ACTATCCCAGATAGGGT
1 CTTACATGTAAATCAGATA-CGATGCCGA-TATCCCAGACAGGGT
* *
66976345 CTTACACG-AAATCAGATACGATGCCGATATCCCAGACATGGT
1 CTTACATGTAAATCAGATACGATGCCGATATCCCAGACAGGGT
*
66976387 CTTATATGTAAATC
1 CTTACATGTAAATC
66976401 TCAATCGAGG
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
42 31 0.66
43 16 0.34
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.28
Consensus pattern (43 bp):
CTTACATGTAAATCAGATACGATGCCGATATCCCAGACAGGGT
Found at i:66997451 original size:64 final size:62
Alignment explanation
Indices: 66997382--66997580 Score: 163
Period size: 64 Copynumber: 3.1 Consensus size: 62
66997372 TTATCAAAAT
*
66997382 TTTAAAAAAGTGTAAACTTTATTTAGTACTAAAAATTATAATAATATTTTATAATCTTTAGAAA
1 TTTAAAAAAGTGTAAA-TTTATTTAATACTAAAAATTATAATAATATTTTATAAT-TTTAGAAA
* * * * *** * * * * *
66997446 TTTAAAAAAAT-TAATTAATTGTTTACCTA-TAAAAAACCTAA-AA-ACTTAACAATTATCAAAA
1 TTTAAAAAAGTGTAA--ATTTATTTA-ATACTAAAAATTATAATAATATTTTATAATT-TTAGAA
66997507 A
62 A
* *
66997508 TTTTAAAAAGTGTAAAATTTATTTAATACTAAAAATTATAATAATATTCTATAATTTTTAGAAA
1 TTTAAAAAAGTGT-AAATTTATTTAATACTAAAAATTATAATAATATTTTATAA-TTTTAGAAA
66997572 TTTAAAAAA
1 TTTAAAAAA
66997581 ATTAATTAAT
Statistics
Matches: 98, Mismatches: 27, Indels: 20
0.68 0.19 0.14
Matches are distributed among these distances:
61 3 0.03
62 37 0.38
63 8 0.08
64 45 0.46
65 5 0.05
ACGTcount: A:0.51, C:0.06, G:0.04, T:0.39
Consensus pattern (62 bp):
TTTAAAAAAGTGTAAATTTATTTAATACTAAAAATTATAATAATATTTTATAATTTTAGAAA
Found at i:66997493 original size:126 final size:126
Alignment explanation
Indices: 66997350--66997596 Score: 424
Period size: 126 Copynumber: 2.0 Consensus size: 126
66997340 TAATTTTTTA
* * *
66997350 AAAAAATCTAAAAACTTAAAAATTATC-AAAATTTTAAAAAAGTGTAAACTTTATTTAGTACTAA
1 AAAAAACCTAAAAACTTAAAAATTATCAAAAATTTT-AAAAAGTGTAAAATTTATTTAATACTAA
*
66997414 AAATTATAATAATATTTTATAATCTTTAGAAATTTAAAAAAATTAATTAATTGTTTACCTAT
65 AAATTATAATAATATTCTATAATCTTTAGAAATTTAAAAAAATTAATTAATTGTTTACCTAT
*
66997476 AAAAAACCTAAAAACTTAACAATTATCAAAAATTTTAAAAAGTGTAAAATTTATTTAATACTAAA
1 AAAAAACCTAAAAACTTAAAAATTATCAAAAATTTTAAAAAGTGTAAAATTTATTTAATACTAAA
*
66997541 AATTATAATAATATTCTATAATTTTTAGAAATTTAAAAAAATTAATTAATTGTTTA
66 AATTATAATAATATTCTATAATCTTTAGAAATTTAAAAAAATTAATTAATTGTTTA
66997597 AGTAAACACA
Statistics
Matches: 114, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
126 106 0.93
127 8 0.07
ACGTcount: A:0.52, C:0.06, G:0.04, T:0.38
Consensus pattern (126 bp):
AAAAAACCTAAAAACTTAAAAATTATCAAAAATTTTAAAAAGTGTAAAATTTATTTAATACTAAA
AATTATAATAATATTCTATAATCTTTAGAAATTTAAAAAAATTAATTAATTGTTTACCTAT
Found at i:66998373 original size:42 final size:43
Alignment explanation
Indices: 66998298--66998435 Score: 156
Period size: 44 Copynumber: 3.2 Consensus size: 43
66998288 TTTCATCCAA
* *
66998298 TCTTACATGTAATCAAATATCGATGCCACTGTCCCAGATAG-GG
1 TCTTACATGAAATCAAATATCGATGCCAATGTCCCAGA-AGTGG
* * *
66998341 TCTTACACGAAATCAGATA-CGATGCCAATGTCCCAGACGTGG
1 TCTTACATGAAATCAAATATCGATGCCAATGTCCCAGAAGTGG
* * *
66998383 TCTTACATGCAAAACATAA-ATCGATGCCAATGTCTCAGACGTGG
1 TCTTACATG-AAATCA-AATATCGATGCCAATGTCCCAGAAGTGG
66998427 TCTTACATG
1 TCTTACATG
66998436 CAGAACAGAT
Statistics
Matches: 82, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
41 1 0.01
42 27 0.33
43 22 0.27
44 32 0.39
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (43 bp):
TCTTACATGAAATCAAATATCGATGCCAATGTCCCAGAAGTGG
Found at i:67005603 original size:27 final size:29
Alignment explanation
Indices: 67005555--67005609 Score: 71
Period size: 29 Copynumber: 1.9 Consensus size: 29
67005545 TATTTAATTT
67005555 ACAATTTAGTCCTTCAAAAGCTC-ATTTTC
1 ACAATTTAGTCC-TCAAAAGCTCGATTTTC
67005584 ACAATTTAGT-C-CAAATAGCTCGATTT
1 ACAATTTAGTCCTCAAA-AGCTCGATTT
67005610 CATCAAAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
26 4 0.17
27 5 0.21
28 5 0.21
29 10 0.42
ACGTcount: A:0.33, C:0.22, G:0.09, T:0.36
Consensus pattern (29 bp):
ACAATTTAGTCCTCAAAAGCTCGATTTTC
Done.