Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 205 of 356
Found at i:67005611 original size:27 final size:27
Alignment explanation
Indices: 67005551--67005611 Score: 65
Period size: 27 Copynumber: 2.2 Consensus size: 27
67005541 AACATATTTA
67005551 ATTT-ACAATTTAGTCCTTCAAAAGCTC
1 ATTTCACAATTTAGTCC-TCAAAAGCTC
67005578 ATTTTCACAATTTAGT-C-CAAATAGCTC
1 A-TTTCACAATTTAGTCCTCAAA-AGCTC
67005605 GATTTCA
1 -ATTTCA
67005612 TCAAAAACTC
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
26 4 0.13
27 11 0.37
28 5 0.17
29 10 0.33
ACGTcount: A:0.33, C:0.21, G:0.08, T:0.38
Consensus pattern (27 bp):
ATTTCACAATTTAGTCCTCAAAAGCTC
Found at i:67024277 original size:13 final size:13
Alignment explanation
Indices: 67024259--67024283 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67024249 TAATGGTATA
67024259 TTGAATCCATGAC
1 TTGAATCCATGAC
67024272 TTGAATCCATGA
1 TTGAATCCATGA
67024284 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:67024895 original size:27 final size:27
Alignment explanation
Indices: 67024837--67024987 Score: 151
Period size: 27 Copynumber: 5.6 Consensus size: 27
67024827 TAAATTGTAC
* * *
67024837 AGCACTAAATGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
67024863 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
67024891 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
67024919 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
67024946 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
67024973 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
67024988 GGCTCAATAT
Statistics
Matches: 107, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
26 1 0.01
27 83 0.78
28 23 0.21
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:67024933 original size:55 final size:54
Alignment explanation
Indices: 67024836--67024987 Score: 162
Period size: 55 Copynumber: 2.8 Consensus size: 54
67024826 TTAAATTGTA
* ** * *
67024836 CAGCACTAAATGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATG
1 CAGCACTAAGTGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACG
* * * **
67024890 CGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG
1 CAGCACTAAGTGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATTGACCACG
* * *
67024945 TAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 CAGCACTAAGTGTGCGAGTTGACTATATAGCACTAAGTGTGCG
67024988 GGCTCAATAT
Statistics
Matches: 81, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 38 0.47
55 43 0.53
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (54 bp):
CAGCACTAAGTGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACG
Found at i:67024998 original size:27 final size:27
Alignment explanation
Indices: 67024892--67024998 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
67024882 TGACCATGCG
* * * *
67024892 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
67024920 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
67024947 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
67024974 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
67024999 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:67032295 original size:13 final size:13
Alignment explanation
Indices: 67032277--67032301 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67032267 TAATGGTATA
67032277 TTGAATCCATGAC
1 TTGAATCCATGAC
67032290 TTGAATCCATGA
1 TTGAATCCATGA
67032302 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:67032911 original size:27 final size:27
Alignment explanation
Indices: 67032881--67033003 Score: 147
Period size: 27 Copynumber: 4.5 Consensus size: 27
67032871 TGAATATGAT
* * **
67032881 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGATTTGACTATGTA
67032908 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGA-TTTGACTATGTA
* *
67032936 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGATTTGACTATGTA
* * *
67032963 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGATTTGACTATGTA
*
67032990 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
67033004 GGCTCAATAT
Statistics
Matches: 85, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
27 62 0.73
28 23 0.27
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTTGACTATGTA
Found at i:67032942 original size:55 final size:54
Alignment explanation
Indices: 67032881--67033003 Score: 156
Period size: 55 Copynumber: 2.3 Consensus size: 54
67032871 TGAATATGAT
* * *
67032881 GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAATTGACCACGCAGCACTAAGTGTGCGAG-TTGACTATATA
* ** * *
67032936 GCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAATTGACCACGCAGCACTAAGTGTGCGAGTTGACTATATA
*
67032990 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
67033004 GGCTCAATAT
Statistics
Matches: 59, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
54 22 0.37
55 37 0.63
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAGTGTGCGAATTGACCACGCAGCACTAAGTGTGCGAGTTGACTATATA
Found at i:67033014 original size:27 final size:27
Alignment explanation
Indices: 67032908--67033014 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
67032898 TGACCATGCG
* * * *
67032908 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
67032936 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
67032963 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
67032990 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
67033015 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:67035188 original size:18 final size:18
Alignment explanation
Indices: 67035165--67035228 Score: 67
Period size: 18 Copynumber: 3.6 Consensus size: 18
67035155 GGACTGAACC
*
67035165 TGGCGAACTCTCCCATAT
1 TGGCGAACTCTCCAATAT
67035183 TGGCGAA-TCATCCAATAT
1 TGGCGAACTC-TCCAATAT
** *
67035201 TGGTAAACTCTACAATAT
1 TGGCGAACTCTCCAATAT
*
67035219 TGGCGGACTC
1 TGGCGAACTC
67035229 ACAAGAAGTG
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
17 2 0.05
18 33 0.89
19 2 0.05
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (18 bp):
TGGCGAACTCTCCAATAT
Found at i:67035387 original size:24 final size:24
Alignment explanation
Indices: 67035335--67035387 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
67035325 AAGATTTAAA
*
67035335 ATTTATTAGCATAATATATTTGTT
1 ATTTCTTAGCATAATATATTTGTT
*
67035359 ATTTCTTAGCATACA-ATCTTTGTT
1 ATTTCTTAGCATA-ATATATTTGTT
67035383 ATTTC
1 ATTTC
67035388 CTTATGTAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 25 0.96
25 1 0.04
ACGTcount: A:0.28, C:0.11, G:0.08, T:0.53
Consensus pattern (24 bp):
ATTTCTTAGCATAATATATTTGTT
Found at i:67036385 original size:20 final size:20
Alignment explanation
Indices: 67036340--67036385 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
67036330 GGTCATGGAT
*
67036340 ATATTATGCTGAAATTAGAA
1 ATATTATGCTGAAAATAGAA
*
67036360 AT-TTATGGTGGAAAATA-AA
1 ATATTATGCT-GAAAATAGAA
67036379 ATATTAT
1 ATATTAT
67036386 TGATAGATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 10 0.45
20 12 0.55
ACGTcount: A:0.46, C:0.02, G:0.15, T:0.37
Consensus pattern (20 bp):
ATATTATGCTGAAAATAGAA
Found at i:67036470 original size:20 final size:20
Alignment explanation
Indices: 67036445--67036483 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
67036435 AGAGACTAAA
*
67036445 ATGAAAAGTTATAAAATTTG
1 ATGAAAAATTATAAAATTTG
*
67036465 ATGAAAAATTCTAAAATTT
1 ATGAAAAATTATAAAATTT
67036484 TAGGAATAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.51, C:0.03, G:0.10, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTATAAAATTTG
Found at i:67037159 original size:56 final size:58
Alignment explanation
Indices: 67037027--67037175 Score: 175
Period size: 56 Copynumber: 2.6 Consensus size: 58
67037017 CATTGACCTT
* *
67037027 GTTATAAAAAGGATTTAGCCCAGA-TGGGTAATCCTAATGTAATACCTCTCGAGCATAC
1 GTTATATAAAGGATTTAGCCTAGACT-GGTAATCCTAATGTAATACCTCTCGAGCATAC
* * *
67037085 GTTATGAT-TAGGGTTTAGCCTGGACTGGTAATCCTAAT-TGAACT-CC-CT-GAGCATAC
1 GTTAT-ATAAAGGATTTAGCCTAGACTGGTAATCCTAATGT-AA-TACCTCTCGAGCATAC
67037141 GTTATATAAAGGATTTAGCCTAGACTGGTAATCCT
1 GTTATATAAAGGATTTAGCCTAGACTGGTAATCCT
67037176 GTTAAACGAT
Statistics
Matches: 78, Mismatches: 8, Indels: 12
0.80 0.08 0.12
Matches are distributed among these distances:
55 2 0.03
56 37 0.47
57 3 0.04
58 33 0.42
59 3 0.04
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31
Consensus pattern (58 bp):
GTTATATAAAGGATTTAGCCTAGACTGGTAATCCTAATGTAATACCTCTCGAGCATAC
Found at i:67044101 original size:20 final size:21
Alignment explanation
Indices: 67044055--67044101 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
67044045 GGTCATGGAT
*
67044055 ATATTATGCTGGAAATTAGAA
1 ATATTATGCTGGAAAATAGAA
*
67044076 AT-TTATGGTGGAAAAT-GAA
1 ATATTATGCTGGAAAATAGAA
67044095 ATATTAT
1 ATATTAT
67044102 TGATAGATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 5 0.22
20 16 0.70
21 2 0.09
ACGTcount: A:0.43, C:0.02, G:0.19, T:0.36
Consensus pattern (21 bp):
ATATTATGCTGGAAAATAGAA
Found at i:67045701 original size:518 final size:517
Alignment explanation
Indices: 67044725--67045756 Score: 1654
Period size: 518 Copynumber: 2.0 Consensus size: 517
67044715 AGCTTGGACA
* * *
67044725 AGTAACCCCATTGACCTTGTTATAAAAAGGATTTAGCCCAGATGGGTAATCCTAATGTAATACCT
1 AGTAACCCCATTAACCTTGTTATAAAAAGGATTTAGCCCAGACGGGTAATCCCAATGTAATACCT
* *
67044790 CTCGAGCATACGTTATGATTAGGGTTTAGCTTGGACCGGTAATCCTAATTGAGCTCCTTGAGCAT
66 CTCGAGCATACGTTATGATTAGGGTTTAGCCTGGACCGGTAATCCTAATTGAGCTCCCTGAGCAT
*
67044855 ACGTTATATAAAGGATTTAGCCTAGACTGGTAATCCTGTTAAACGATATGTGGCTCGAGAGAGTG
131 ACGTTATATAAAGGATTTAGCCTAGACTAGTAATCCTGTTAAACGATATGTGGCTCGAGAGAGTG
* *
67044920 CTTCTTAGCTAAGTGCCCTAATGGGTACCCCTGACTAAGAAATTGAAGAATGGTTGAATTGTACA
196 CTTCTTAGCTAAGTGCCCTAATGGGTACCCCTGAATAAGAAATTGAAGAATGGTTAAATTGTACA
* * * * * * *
67044985 CTTTGTGTGTACTACTTGAGCATTCATTGGAATTCAATGATTCAAATGACATATAACTTTTGATT
261 CTTCGGGTGTACCACTTGAGCATTCATTGGAATTCAATGATTCAAAGGACATAAAACTCTTGACT
*
67045050 TGGCATGAAAACCTTGAGATGAAATAGTAATGACTAGATAGAATATTGCTTGATGAGCTCATTTA
326 TGGCATGAAAACCTTGAGATGAAATAGTAATGACTAGATAGAATATTGCTTGATGAGCTCATCTA
* * *
67045115 TGTTACTTGATTTATATAAAGATTTCAGGGACTGACATGTTTGATTAAATGTATGTGCTTAGGCA
391 TGTTACTTGATTTATATAAAGATTTCAGGGACTAACATATTTGATTAAATGTATATGCTTAGGCA
* *
67045180 AATTTAGCCAAATGGATGGAAACATGATATTGTATGTTTAGATTTAATAATCAATATTGACG
456 AATTTAACCAAATGGATGGAAACATGATATTGTATGTTTAGATTTAATAATCAAGATTGACG
* * *
67045242 AGTAACCCCATTAACCTTGTTATAAAAAGTATTTAG-CCTGAACGGGTAATCCCAGTGTAATACC
1 AGTAACCCCATTAACCTTGTTATAAAAAGGATTTAGCCCAG-ACGGGTAATCCCAATGTAATACC
* * **
67045306 TTTCGAGCATACGTTATGGTTAGGGTTTAGCCTGGATTGGTAATCCTAATTGAGCTTCCCTGAGC
65 TCTCGAGCATACGTTATGATTAGGGTTTAGCCTGGACCGGTAATCCTAATTGAGC-TCCCTGAGC
* * *
67045371 ATACGTTATATAAAGGATTTAGCCTGGACTAGTAATCCTGTTAAATGATATGTGGCTCGAGATAG
129 ATACGTTATATAAAGGATTTAGCCTAGACTAGTAATCCTGTTAAACGATATGTGGCTCGAGAGAG
* * * * *
67045436 TGTTTCTTTGTTAAGTGCCCTAATGGGTAGCCCTGAATAAGAAATTGATGAATGGTTAAATTGTA
194 TGCTTCTTAGCTAAGTGCCCTAATGGGTACCCCTGAATAAGAAATTGAAGAATGGTTAAATTGTA
67045501 CACTTCGGGTGTACCACTTGAGCATTCATTGGAATTCAATGATTCAAAGGACATAAAACTCTTGA
259 CACTTCGGGTGTACCACTTGAGCATTCATTGGAATTCAATGATTCAAAGGACATAAAACTCTTGA
67045566 CTTGGCATGAAAACCTTGAGATGAAATAGTAATGACTAGATAGAATATTGCTTGATGAGCTCATC
324 CTTGGCATGAAAACCTTGAGATGAAATAGTAATGACTAGATAGAATATTGCTTGATGAGCTCATC
* * * *
67045631 TATGTTGCTTGATTTATATGAAGATTT-TGGTGACTAACATATTTGATTGAATGTATATGCTTAG
389 TATGTTACTTGATTTATATAAAGATTTCAGG-GACTAACATATTTGATTAAATGTATATGCTTAG
*
67045695 GCAAATTTAACCAAATGGATGGGAACATGATATTGTATGTTTAGATTTAATAATCAAGATTG
453 GCAAATTTAACCAAATGGATGGAAACATGATATTGTATGTTTAGATTTAATAATCAAGATTG
67045757 GTAAGTTTAA
Statistics
Matches: 471, Mismatches: 41, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
516 3 0.01
517 106 0.23
518 362 0.77
ACGTcount: A:0.31, C:0.14, G:0.21, T:0.34
Consensus pattern (517 bp):
AGTAACCCCATTAACCTTGTTATAAAAAGGATTTAGCCCAGACGGGTAATCCCAATGTAATACCT
CTCGAGCATACGTTATGATTAGGGTTTAGCCTGGACCGGTAATCCTAATTGAGCTCCCTGAGCAT
ACGTTATATAAAGGATTTAGCCTAGACTAGTAATCCTGTTAAACGATATGTGGCTCGAGAGAGTG
CTTCTTAGCTAAGTGCCCTAATGGGTACCCCTGAATAAGAAATTGAAGAATGGTTAAATTGTACA
CTTCGGGTGTACCACTTGAGCATTCATTGGAATTCAATGATTCAAAGGACATAAAACTCTTGACT
TGGCATGAAAACCTTGAGATGAAATAGTAATGACTAGATAGAATATTGCTTGATGAGCTCATCTA
TGTTACTTGATTTATATAAAGATTTCAGGGACTAACATATTTGATTAAATGTATATGCTTAGGCA
AATTTAACCAAATGGATGGAAACATGATATTGTATGTTTAGATTTAATAATCAAGATTGACG
Found at i:67050985 original size:24 final size:24
Alignment explanation
Indices: 67050956--67051002 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
67050946 CATTTTTAGA
67050956 ATATTTAG-AATTTATTAGCATAAT
1 ATATTT-GTAATTTATTAGCATAAT
*
67050980 ATATTTGTTATTTATTAGCATAA
1 ATATTTGTAATTTATTAGCATAA
67051003 AATCTTTCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.38, C:0.04, G:0.09, T:0.49
Consensus pattern (24 bp):
ATATTTGTAATTTATTAGCATAAT
Found at i:67057080 original size:96 final size:96
Alignment explanation
Indices: 67056916--67057090 Score: 262
Period size: 96 Copynumber: 1.8 Consensus size: 96
67056906 AGAGGGTTGT
* * *
67056916 CGATGCCATGTCCCAAACATGGTCTTACACCAGCTCTCGTCTCAATGTCGATGCCATGTCCCAAA
1 CGATGCCATGTCCCAAACATGGTCTTACACCAGCTCTCATATCAATGCCGATGCCATGTCCCAAA
67056981 CATGGTCTTACACTAGCTCTCACAACATCGC
66 CATGGTCTTACACTAGCTCTCACAACATCGC
* ** * *
67057012 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATC-GTGGCCGATGCCATGTCCCAG
1 CGATGCCATGTCCCAAACATGGTCTTACACCAGCTCTCATATCAAT-GCCGATGCCATGTCCCAA
67057076 ACATGGTCTTACACT
65 ACATGGTCTTACACT
67057091 GGCACACATA
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
95 1 0.01
96 69 0.99
ACGTcount: A:0.23, C:0.33, G:0.18, T:0.26
Consensus pattern (96 bp):
CGATGCCATGTCCCAAACATGGTCTTACACCAGCTCTCATATCAATGCCGATGCCATGTCCCAAA
CATGGTCTTACACTAGCTCTCACAACATCGC
Found at i:67057093 original size:48 final size:47
Alignment explanation
Indices: 67056916--67057090 Score: 233
Period size: 48 Copynumber: 3.7 Consensus size: 47
67056906 AGAGGGTTGT
* * * *
67056916 CGATGCCATGTCCCAAACATGGTCTTACACCAGCTCTCGTCTCAATGT
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATC-ATGC
* *
67056964 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCACAACATCGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAT-GC
* * *
67057012 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTGGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAT-GC
*
67057060 CGATGCCATGTCCCAGACATGGTCTTACACT
1 CGATGCCATGTCCCAAACATGGTCTTACACT
67057091 GGCACACATA
Statistics
Matches: 112, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
47 2 0.02
48 110 0.98
ACGTcount: A:0.23, C:0.33, G:0.18, T:0.26
Consensus pattern (47 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCATGC
Found at i:67069713 original size:12 final size:12
Alignment explanation
Indices: 67069696--67069736 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
67069686 TTTATCAAAA
67069696 TTAATTAGTTAT
1 TTAATTAGTTAT
* *
67069708 TTAATTA-TAAA
1 TTAATTAGTTAT
67069719 TTAATTAGTTAT
1 TTAATTAGTTAT
67069731 TTAATT
1 TTAATT
67069737 TATCAAAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
11 9 0.38
12 15 0.62
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56
Consensus pattern (12 bp):
TTAATTAGTTAT
Found at i:67069721 original size:23 final size:23
Alignment explanation
Indices: 67069693--67069736 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
67069683 TAATTTATCA
67069693 AAATTAATTAGTTATTTAATTAT
1 AAATTAATTAGTTATTTAATTAT
67069716 AAATTAATTAGTTATTTAATT
1 AAATTAATTAGTTATTTAATT
67069737 TATCAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (23 bp):
AAATTAATTAGTTATTTAATTAT
Found at i:67076465 original size:35 final size:35
Alignment explanation
Indices: 67076296--67076468 Score: 197
Period size: 35 Copynumber: 5.0 Consensus size: 35
67076286 CGATTCACTA
* * * *
67076296 CTCAGTATGGTTAATACCATACCTAAGTTTCACAA
1 CTCAGTATGGATAATACCATACCTACGTTTCATAG
* * *
67076331 CTCGGTATGGAAAATACCATACTTACGTATT-ATAG
1 CTCAGTATGGATAATACCATACCTACGT-TTCATAG
* ** * * *
67076366 CTTAGTATGGAGGATACCATACCTACATCTCATGG
1 CTCAGTATGGATAATACCATACCTACGTTTCATAG
*
67076401 ATCAGTATGGA-AATACCATACCTACGTTTCATAG
1 CTCAGTATGGATAATACCATACCTACGTTTCATAG
67076435 CTCAGTATGGATAATACCATACCTACGTTTCATA
1 CTCAGTATGGATAATACCATACCTACGTTTCATA
67076469 ACTTTGCCAT
Statistics
Matches: 113, Mismatches: 22, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
34 30 0.27
35 81 0.72
36 2 0.02
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (35 bp):
CTCAGTATGGATAATACCATACCTACGTTTCATAG
Found at i:67087077 original size:35 final size:35
Alignment explanation
Indices: 67086998--67087170 Score: 188
Period size: 35 Copynumber: 5.0 Consensus size: 35
67086988 CAATTCGCTA
** * * *
67086998 CTCAGTATGGTTAATACCATACCTACGTTTCACAA
1 CTCAGTATGGAAAATACCATACCTACGTATCATAG
* * *
67087033 CT-TGATATGGAAAATATCATACCTACGTATTATAG
1 CTCAG-TATGGAAAATACCATACCTACGTATCATAG
* ** * *
67087068 CTCGGTATGGAGGATACCATACCTACATCTCATAG
1 CTCAGTATGGAAAATACCATACCTACGTATCATAG
67087103 CTCAGTATGG-AAATACCATACCTACGTATCATAG
1 CTCAGTATGGAAAATACCATACCTACGTATCATAG
* *
67087137 CTCAGTATGGATAATACCATACCTACGTTTCATA
1 CTCAGTATGGAAAATACCATACCTACGTATCATA
67087171 ACTTTGCCAT
Statistics
Matches: 113, Mismatches: 22, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
34 31 0.27
35 81 0.72
36 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.30
Consensus pattern (35 bp):
CTCAGTATGGAAAATACCATACCTACGTATCATAG
Found at i:67087170 original size:69 final size:70
Alignment explanation
Indices: 67086998--67087173 Score: 230
Period size: 69 Copynumber: 2.5 Consensus size: 70
67086988 CAATTCGCTA
* * * *
67086998 CTCAGTATGGTTAATACCATACCTACGTTTCACAACTTGATATGGAAAATATCATACCTACGTAT
1 CTCAGTATGGATAATACCATACCTACGTTTCATAACTAGATATGGAAAATACCATACCTACGTAT
*
67087063 TATAG
66 CATAG
* ** * * *
67087068 CTCGGTATGGAGGATACCATACCTACATCTCATAGCTCAG-TATGG-AAATACCATACCTACGTA
1 CTCAGTATGGATAATACCATACCTACGTTTCATAACT-AGATATGGAAAATACCATACCTACGTA
67087131 TCATAG
65 TCATAG
67087137 CTCAGTATGGATAATACCATACCTACGTTTCATAACT
1 CTCAGTATGGATAATACCATACCTACGTTTCATAACT
67087174 TTGCCATGGA
Statistics
Matches: 88, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
69 53 0.60
70 34 0.39
71 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.30
Consensus pattern (70 bp):
CTCAGTATGGATAATACCATACCTACGTTTCATAACTAGATATGGAAAATACCATACCTACGTAT
CATAG
Found at i:67097627 original size:2 final size:2
Alignment explanation
Indices: 67097620--67097645 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
67097610 AACATAAATC
67097620 AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG
67097646 GGGGGGGAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:67104343 original size:9 final size:8
Alignment explanation
Indices: 67104313--67104339 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
67104303 TTATCTTTAT
67104313 TTTATAAC
1 TTTATAAC
67104321 TTTATAAC
1 TTTATAAC
67104329 TTTATAAC
1 TTTATAAC
67104337 TTT
1 TTT
67104340 TATATATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.33, C:0.11, G:0.00, T:0.56
Consensus pattern (8 bp):
TTTATAAC
Found at i:67105109 original size:20 final size:21
Alignment explanation
Indices: 67105064--67105111 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
67105054 AAGATTTAAC
*
67105064 TTTTTTATATATTTTTTAGAA
1 TTTTTTATATATTTTGTAGAA
* *
67105085 GTTTTTATA-ATTTTGTATAA
1 TTTTTTATATATTTTGTAGAA
67105105 TTTTTTA
1 TTTTTTA
67105112 AAAATATTAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
20 15 0.65
21 8 0.35
ACGTcount: A:0.27, C:0.00, G:0.06, T:0.67
Consensus pattern (21 bp):
TTTTTTATATATTTTGTAGAA
Found at i:67105169 original size:10 final size:10
Alignment explanation
Indices: 67105154--67105179 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
67105144 TTGAATTTTA
67105154 AAAATTATTG
1 AAAATTATTG
67105164 AAAATTATTG
1 AAAATTATTG
67105174 AAAATT
1 AAAATT
67105180 TTTTAATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (10 bp):
AAAATTATTG
Found at i:67106012 original size:29 final size:28
Alignment explanation
Indices: 67105911--67106020 Score: 68
Period size: 27 Copynumber: 3.8 Consensus size: 28
67105901 TATTATACTA
*
67105911 AAAATTATTAT-AAAATATAAATAATTAC-
1 AAAA-TATTATAAAAATATAAAAAATT-CT
* ** *
67105939 AAAATTTTATAAAGCT-TAGAAAAAAT-T
1 AAAATATTATAAAAATATA-AAAAATTCT
67105966 AAAA-AGTTATAAACAAATATAGAAAAATTCT
1 AAAATA-TTAT-AA-AAATATA-AAAAATTCT
67105997 AAAATATTATAAAAATCATAAAAA
1 AAAATATTATAAAAAT-ATAAAAA
67106021 GAATAAGATA
Statistics
Matches: 63, Mismatches: 9, Indels: 19
0.69 0.10 0.21
Matches are distributed among these distances:
27 15 0.24
28 14 0.22
29 10 0.16
30 14 0.22
31 9 0.14
32 1 0.02
ACGTcount: A:0.62, C:0.05, G:0.04, T:0.30
Consensus pattern (28 bp):
AAAATATTATAAAAATATAAAAAATTCT
Found at i:67106297 original size:28 final size:28
Alignment explanation
Indices: 67106266--67106325 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 28
67106256 CTATTAAATT
67106266 ATAATTTT-TATATGCCTTATAATTTTTA
1 ATAATTTTCTATATGCCTTAT-ATTTTTA
***
67106294 ATAATTTTCTATATTTTTTATATTTTTA
1 ATAATTTTCTATATGCCTTATATTTTTA
67106322 ATAA
1 ATAA
67106326 GTTAATTGCT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 19 0.68
29 9 0.32
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (28 bp):
ATAATTTTCTATATGCCTTATATTTTTA
Found at i:67107367 original size:5 final size:5
Alignment explanation
Indices: 67107357--67107392 Score: 63
Period size: 5 Copynumber: 7.2 Consensus size: 5
67107347 AAGCCAAAAG
*
67107357 TATTT TATTT TATTT TATTT TATTT TATTT TGTTT T
1 TATTT TATTT TATTT TATTT TATTT TATTT TATTT T
67107393 CATATAATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.81
Consensus pattern (5 bp):
TATTT
Found at i:67108130 original size:21 final size:20
Alignment explanation
Indices: 67108101--67108146 Score: 67
Period size: 19 Copynumber: 2.2 Consensus size: 20
67108091 TATACTCAGT
67108101 TTCATCAAACACGTAAAGGATA
1 TTCATCAAACA--TAAAGGATA
67108123 TTCA-CAAACATAAAGGATA
1 TTCATCAAACATAAAGGATA
67108142 TTCAT
1 TTCAT
67108147 GGTTGGGCCC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 13 0.57
21 6 0.26
22 4 0.17
ACGTcount: A:0.46, C:0.17, G:0.11, T:0.26
Consensus pattern (20 bp):
TTCATCAAACATAAAGGATA
Found at i:67115289 original size:24 final size:23
Alignment explanation
Indices: 67115261--67115319 Score: 57
Period size: 24 Copynumber: 2.5 Consensus size: 23
67115251 ATAGCTCGAA
*
67115261 AGAGCATCTCGTTATTAGCCCTCTT
1 AGAGCATCTCGTTAGTAG--CTCTT
* *
67115286 -GAGCTTCCCGTTAGTAGCTCTT
1 AGAGCATCTCGTTAGTAGCTCTT
67115308 CAGAGCATCTCG
1 -AGAGCATCTCG
67115320 ATAGATTGTG
Statistics
Matches: 27, Mismatches: 5, Indels: 5
0.73 0.14 0.14
Matches are distributed among these distances:
22 5 0.19
24 22 0.81
ACGTcount: A:0.19, C:0.29, G:0.20, T:0.32
Consensus pattern (23 bp):
AGAGCATCTCGTTAGTAGCTCTT
Found at i:67115535 original size:25 final size:24
Alignment explanation
Indices: 67115469--67115535 Score: 107
Period size: 24 Copynumber: 2.8 Consensus size: 24
67115459 CTATCCAGAG
67115469 CTTCCCGATATGGTTCTTTGTGAA
1 CTTCCCGATATGGTTCTTTGTGAA
67115493 CTTCCCGATATGGTTCTTTGTGAA
1 CTTCCCGATATGGTTCTTTGTGAA
* *
67115517 CTTCCTGATTATGGCTCTT
1 CTTCCCGA-TATGGTTCTT
67115536 ATGAGCTACC
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
24 31 0.77
25 9 0.22
ACGTcount: A:0.15, C:0.22, G:0.19, T:0.43
Consensus pattern (24 bp):
CTTCCCGATATGGTTCTTTGTGAA
Found at i:67125802 original size:29 final size:31
Alignment explanation
Indices: 67125752--67125817 Score: 73
Period size: 29 Copynumber: 2.2 Consensus size: 31
67125742 ACAACTTAAG
* * **
67125752 AATTAATTTAAGTTTTTGAATT-ATT-AATT
1 AATTAAATGAAGTTTTAAAATTAATTAAATT
67125781 AATTAAATGAAGTTTTAAAATTGAATTAAATT
1 AATTAAATGAAGTTTTAAAATT-AATTAAATT
67125813 AATTA
1 AATTA
67125818 TTCATTATGA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 18 0.60
31 3 0.10
32 9 0.30
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.47
Consensus pattern (31 bp):
AATTAAATGAAGTTTTAAAATTAATTAAATT
Found at i:67128964 original size:69 final size:70
Alignment explanation
Indices: 67128834--67128964 Score: 210
Period size: 69 Copynumber: 1.9 Consensus size: 70
67128824 GTTTATTACC
* * * * *
67128834 AATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTACT
1 AATTAATATGCTGCTATAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTACT
67128899 TAGTT
66 TAGTT
67128904 AATTAATATGCTGCTATAATACT-TAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
1 AATTAATATGCTGCTATAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
67128965 GTTATGTGCT
Statistics
Matches: 56, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
69 36 0.64
70 20 0.36
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.37
Consensus pattern (70 bp):
AATTAATATGCTGCTATAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTACT
TAGTT
Found at i:67129951 original size:118 final size:117
Alignment explanation
Indices: 67129710--67129973 Score: 348
Period size: 118 Copynumber: 2.2 Consensus size: 117
67129700 ATATTTGATG
* * *
67129710 TATATCCGGACTTAAGGTCCGCAGGCTTCGTGCTAGAATTGTATCCGGACTTAAGGTCTACAGGC
1 TATATCCGGACTTAAGGTCCGCAGGCTTCATGCTAGAATTGTATCCGGACTTAAGATCCACAGGC
* * * * * * *
67129775 TTCGTGCTGGAATTGTATCCTGACTTAAGGTCCGCAGGCTTCGTGCTGGAAT
66 TTCGTGCTGGAACTATATCCGGACTTAAGGTCCACAAGCTTCGTACTGGAAC
* * ** * *
67129827 TGTATCCGGGCTTAAAGACCCGCAGGCTTCATGCTGGAATTGTATCCGGACTTAAGATCCGCAGG
1 TATATCCGGACTT-AAGGTCCGCAGGCTTCATGCTAGAATTGTATCCGGACTTAAGATCCACAGG
* *
67129892 CTTCGTGCTGGTACTATATCCGGACTTAAGGTCCACAAGCTTCGTACTGGTAC
65 CTTCGTGCTGGAACTATATCCGGACTTAAGGTCCACAAGCTTCGTACTGGAAC
*
67129945 TATATCCAGACTTAAGGTCCGCAGGCTTC
1 TATATCCGGACTTAAGGTCCGCAGGCTTC
67129974 GTACTGGTAC
Statistics
Matches: 123, Mismatches: 23, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
117 25 0.20
118 98 0.80
ACGTcount: A:0.22, C:0.24, G:0.26, T:0.28
Consensus pattern (117 bp):
TATATCCGGACTTAAGGTCCGCAGGCTTCATGCTAGAATTGTATCCGGACTTAAGATCCACAGGC
TTCGTGCTGGAACTATATCCGGACTTAAGGTCCACAAGCTTCGTACTGGAAC
Found at i:67129984 original size:39 final size:39
Alignment explanation
Indices: 67129712--67129980 Score: 349
Period size: 39 Copynumber: 6.9 Consensus size: 39
67129702 ATTTGATGTA
*
67129712 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTAGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
**
67129751 TATCCGGACTTAAGGTCTACAGGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
*
67129790 TATCCTGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* ** *
67129829 TATCCGGGCTTAAAGACCCGCAGGCTTCATGCTGGAATTG
1 TATCCGGACTT-AAGGTCCGCAGGCTTCGTGCTGGAATTG
* * * *
67129869 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGTACTA
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* * * * * *
67129908 TATCCGGACTTAAGGTCCACAAGCTTCGTACTGGTACTA
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* *
67129947 TATCCAGACTTAAGGTCCGCAGGCTTCGTACTGG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGG
67129981 TACTGTAACA
Statistics
Matches: 205, Mismatches: 24, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
39 170 0.83
40 35 0.17
ACGTcount: A:0.21, C:0.24, G:0.26, T:0.28
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
Found at i:67130734 original size:31 final size:31
Alignment explanation
Indices: 67130693--67130756 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
67130683 CCTTTTCATA
*
67130693 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
67130724 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
67130755 TT
1 TT
67130757 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:67131041 original size:47 final size:47
Alignment explanation
Indices: 67130949--67131114 Score: 196
Period size: 47 Copynumber: 3.5 Consensus size: 47
67130939 TGCTTTATCA
* *
67130949 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAG-CCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCTAAGCCCTTTT
*
67130996 TATAACTGGGGCATAAGCCC-TTTAATAATTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGC-TAAGCCCTTTT
* *
67131043 GATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGC-TAAGCCCTTTT
* *
67131090 AATAATTGGGGCATAAGCCCATTTT
1 TATAACTGGGGCATAAGCCC-TTTT
67131115 CACTTCCTCC
Statistics
Matches: 105, Mismatches: 9, Indels: 9
0.85 0.07 0.07
Matches are distributed among these distances:
45 14 0.13
46 8 0.08
47 59 0.56
48 24 0.23
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.31
Consensus pattern (47 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCTAAGCCCTTTT
Found at i:67131052 original size:24 final size:24
Alignment explanation
Indices: 67130950--67131114 Score: 205
Period size: 24 Copynumber: 7.0 Consensus size: 24
67130940 GCTTTATCAT
*
67130950 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
67130975 ATAACTGGGGCA-AAG-CCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
67130997 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* * *
67131020 ATAATTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
67131044 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
67131068 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
67131091 ATAATTGGGGCATAAGCCCATTTT
1 ATAACTGGGGCATAAGCCC-TTTT
67131115 CACTTCCTCC
Statistics
Matches: 124, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
22 17 0.14
23 45 0.36
24 51 0.41
25 11 0.09
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:67131109 original size:23 final size:23
Alignment explanation
Indices: 67130971--67131109 Score: 190
Period size: 23 Copynumber: 6.0 Consensus size: 23
67130961 CCTAGCCTCT
*
67130971 TTTAATAACTGGGGCA-AAGCCT
1 TTTAATAACTGGGGCATAAGCCC
*
67130993 TTTTATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* *
67131016 TTTAATAATTGGGGCGTAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
67131039 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
67131063 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
67131087 TTTAATAATTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
67131110 ATTTTCACTT
Statistics
Matches: 105, Mismatches: 10, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
22 15 0.14
23 46 0.44
24 44 0.42
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:67131209 original size:20 final size:20
Alignment explanation
Indices: 67131164--67131202 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
67131154 TATGAATACA
67131164 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATG
67131184 TCATGTGCATATCATACAT
1 TCATGTGCATATCATACAT
67131203 AGCATGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATG
Found at i:67134883 original size:68 final size:66
Alignment explanation
Indices: 67134805--67135003 Score: 193
Period size: 68 Copynumber: 3.0 Consensus size: 66
67134795 ATTTTAACAA
*
67134805 ATTTAATATTAAATTTAATTTAATAGTTATCTTGATAGTATTTTATTAATTTAATATTAAAGTGA
1 ATTTAATATTAAATTTAATTTAATATTTATCTTGATAGTATTTTATTAATTTAATATTAAAG-GA
67134870 TT
65 TT
* *
67134872 ATCTTAATATTAAATTAAATTTAATATTTATATT-ATAGGTAAATATTTTATTAATTT-A-A-T-
1 AT-TTAATATTAAATTTAATTTAATATTTATCTTGATA-G----TATTTTATTAATTTAATATTA
67134932 AAGG---
60 AAGGATT
* *
67134936 -TTTAATATTAAATTTAATCTAATATTTATCTTGATAAGTATTATATTAA-TTATATATTAAAGC
1 ATTTAATATTAAATTTAATTTAATATTTATCTTGAT-AGTATTTTATTAATTTA-ATATTAAAG-
67134999 GATT
63 GATT
67135003 A
1 A
67135004 AGTTTAATCA
Statistics
Matches: 107, Mismatches: 7, Indels: 35
0.72 0.05 0.23
Matches are distributed among these distances:
58 2 0.02
59 10 0.09
60 1 0.01
61 1 0.01
62 29 0.27
63 7 0.07
64 2 0.02
67 6 0.06
68 32 0.30
69 1 0.01
70 1 0.01
71 1 0.01
72 14 0.13
ACGTcount: A:0.41, C:0.03, G:0.07, T:0.50
Consensus pattern (66 bp):
ATTTAATATTAAATTTAATTTAATATTTATCTTGATAGTATTTTATTAATTTAATATTAAAGGAT
T
Found at i:67135582 original size:15 final size:15
Alignment explanation
Indices: 67135562--67135591 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
67135552 TAGATTCTCC
67135562 TATCTCTCCCTATAA
1 TATCTCTCCCTATAA
*
67135577 TATCTCTCCTTATAA
1 TATCTCTCCCTATAA
67135592 ATAGATAGCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.30, G:0.00, T:0.43
Consensus pattern (15 bp):
TATCTCTCCCTATAA
Found at i:67136081 original size:49 final size:49
Alignment explanation
Indices: 67136009--67136102 Score: 161
Period size: 49 Copynumber: 1.9 Consensus size: 49
67135999 TGGTATCGAG
*
67136009 CCAAGGTTGAGCTATGTTTATAGTATAAACCAATACCGAATTTTCTATC
1 CCAAGGTTGAGCTATGTCTATAGTATAAACCAATACCGAATTTTCTATC
* *
67136058 CCAAGGTTGAGCTATGTCTATAGTATAAACCGATACTGAATTTTC
1 CCAAGGTTGAGCTATGTCTATAGTATAAACCAATACCGAATTTTC
67136103 GATCTTCTTG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 42 1.00
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (49 bp):
CCAAGGTTGAGCTATGTCTATAGTATAAACCAATACCGAATTTTCTATC
Found at i:67144714 original size:20 final size:20
Alignment explanation
Indices: 67144691--67144729 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
67144681 TAAGATTTAG
67144691 AAAACAAAGTTAAGGGTTTC
1 AAAACAAAGTTAAGGGTTTC
* **
67144711 AAAACTATTTTAAGGGTTT
1 AAAACAAAGTTAAGGGTTT
67144730 TCATGTTTCT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.41, C:0.08, G:0.18, T:0.33
Consensus pattern (20 bp):
AAAACAAAGTTAAGGGTTTC
Found at i:67147301 original size:23 final size:23
Alignment explanation
Indices: 67147271--67147321 Score: 93
Period size: 23 Copynumber: 2.2 Consensus size: 23
67147261 TACTATTTCA
*
67147271 TATTTAAGCTTTATTCACCGAAG
1 TATTTAAGCTTTATTCACCAAAG
67147294 TATTTAAGCTTTATTCACCAAAG
1 TATTTAAGCTTTATTCACCAAAG
67147317 TATTT
1 TATTT
67147322 CAAATATCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.31, C:0.16, G:0.10, T:0.43
Consensus pattern (23 bp):
TATTTAAGCTTTATTCACCAAAG
Found at i:67148017 original size:42 final size:42
Alignment explanation
Indices: 67147967--67148081 Score: 160
Period size: 42 Copynumber: 2.7 Consensus size: 42
67147957 CTTCATTTTC
** * * *
67147967 TCGATGCCATAGTTCAACTATGGTCTTACATATCTTCAGATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCAGAT-A
*
67148010 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCAGATA
67148051 TCGATGCCATAGCCCAGCTATGGTCTTACAC
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC
67148082 GAATCACATA
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
41 2 0.03
42 62 0.95
43 1 0.02
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCAGATA
Found at i:67148124 original size:88 final size:89
Alignment explanation
Indices: 67148010--67148177 Score: 214
Period size: 88 Copynumber: 1.9 Consensus size: 89
67148000 CTTCAGATAA
* * *
67148010 TGATGCCATAGCCCAGCTATGGTCTTACACA-TATTCATATAT-CGATGCCATAGCCCAGCTATG
1 TGATGCCATAGCCCAGATATGGTCTTACACAGTA-GCATATATCCGATGCCATAGCCCAGATATG
67148073 GTCTTACACGAATCACATATCTCAC
65 GTCTTACACGAATCACATATCTCAC
* * *
67148098 TGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACACCGATGCCATATCCCAGAT
1 TGATGCCATAGCCCAGATATGGTCTTACACAGTAGCATATAT----CCGATGCCATAGCCCAGAT
*
67148163 ATGGTCTTATACGAA
62 ATGGTCTTACACGAA
67148178 AATCACTTGT
Statistics
Matches: 67, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
88 35 0.52
89 2 0.03
93 30 0.45
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (89 bp):
TGATGCCATAGCCCAGATATGGTCTTACACAGTAGCATATATCCGATGCCATAGCCCAGATATGG
TCTTACACGAATCACATATCTCAC
Found at i:67148155 original size:47 final size:46
Alignment explanation
Indices: 67148052--67148177 Score: 171
Period size: 47 Copynumber: 2.7 Consensus size: 46
67148042 ATTCATATAT
* * * * *
67148052 CGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCTCAC
1 CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
* * *
67148098 TGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACAC
1 CGATGCCATATCCCAGATATGGTCTTATAC-GAAGCACATATCACAC
67148145 CGATGCCATATCCCAGATATGGTCTTATACGAA
1 CGATGCCATATCCCAGATATGGTCTTATACGAA
67148178 AATCACTTGT
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
46 28 0.41
47 41 0.59
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (46 bp):
CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
Found at i:67148228 original size:31 final size:31
Alignment explanation
Indices: 67148193--67148372 Score: 281
Period size: 31 Copynumber: 5.8 Consensus size: 31
67148183 CTTGTCACTT
*
67148193 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
67148224 GTAGCC-AGGGCTACCATTTTTCACTGATCAG
1 GTAGCCGA-AGCTACCACTTTTCACTGATCAG
*
67148255 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
67148286 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
67148317 GTAGCAGAGGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
67148348 GTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
67148373 TGTTATTTGT
Statistics
Matches: 136, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
30 1 0.01
31 135 0.99
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.26
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:67148453 original size:50 final size:50
Alignment explanation
Indices: 67148348--67148524 Score: 291
Period size: 50 Copynumber: 3.5 Consensus size: 50
67148338 CACTGATCAG
* * * *
67148348 GTAGCCGAAGCTACCACTTTTCACTTGTTATTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCCTTGATCAGATAAGT
*
67148399 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
*
67148449 GTAGCCGAAGCTATTACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
67148499 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
67148525 GTTGCCATGG
Statistics
Matches: 118, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
50 94 0.80
51 24 0.20
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
Found at i:67160222 original size:21 final size:21
Alignment explanation
Indices: 67160198--67160245 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
67160188 AACTATTATT
67160198 ATTATTATTATTATATT-TTAA
1 ATTATTATTATTAT-TTCTTAA
*
67160219 ATTATAATTATTATTTCTTAA
1 ATTATTATTATTATTTCTTAA
67160240 A-TATTA
1 ATTATTA
67160246 AGTAAATACA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 6 0.25
21 18 0.75
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (21 bp):
ATTATTATTATTATTTCTTAA
Found at i:67164052 original size:21 final size:21
Alignment explanation
Indices: 67164028--67164069 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
67164018 TTGTCAAATC
67164028 ACCCCAAAATGGATAACAAAA
1 ACCCCAAAATGGATAACAAAA
67164049 ACCCCAAAATGGATAACAAAA
1 ACCCCAAAATGGATAACAAAA
67164070 TTAACGTTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.57, C:0.24, G:0.10, T:0.10
Consensus pattern (21 bp):
ACCCCAAAATGGATAACAAAA
Found at i:67174043 original size:17 final size:18
Alignment explanation
Indices: 67174011--67174045 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
67174001 CGATGTGATC
67174011 TGCCTGTGTGGGCCCACA
1 TGCCTGTGTGGGCCCACA
67174029 TGCCTGTGT-GGCCCACA
1 TGCCTGTGTGGGCCCACA
67174046 CGGCCCAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.11, C:0.34, G:0.31, T:0.23
Consensus pattern (18 bp):
TGCCTGTGTGGGCCCACA
Found at i:67187533 original size:52 final size:48
Alignment explanation
Indices: 67187351--67187555 Score: 197
Period size: 47 Copynumber: 4.2 Consensus size: 48
67187341 TTGCACATAG
*
67187351 TCACATATCACA-TACCGAGGCCATAGCCCAG--ATGGTCTTATACGG-A
1 TCACATATCACACT--CGATGCCATAGCCCAGATATGGTCTTATACGGAA
* * * *
67187397 TCACATATCACACT-GATGCCATATCCCAGATATAGTCTTATACAGTA
1 TCACATATCACACTCGATGCCATAGCCCAGATATGGTCTTATACGGAA
* * *
67187444 GCACATATCACAC-CGATGCCATATCCCGGATATGGTCTTATACGGAA
1 TCACATATCACACTCGATGCCATAGCCCAGATATGGTCTTATACGGAA
* * *
67187491 CCACATATCACATTTCTTCGAAGCCATAGCCCAGCTATGGTCTTATACGGAAA
1 TCACATATCACA---C-TCGATGCCATAGCCCAGATATGGTCTTATACGG-AA
*
67187544 TCACATTTCACA
1 TCACATATCACA
67187556 TGCTGCCATG
Statistics
Matches: 132, Mismatches: 16, Indels: 15
0.81 0.10 0.09
Matches are distributed among these distances:
44 13 0.10
46 24 0.18
47 54 0.41
50 1 0.01
52 28 0.21
53 12 0.09
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (48 bp):
TCACATATCACACTCGATGCCATAGCCCAGATATGGTCTTATACGGAA
Found at i:67190081 original size:15 final size:15
Alignment explanation
Indices: 67190052--67190101 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
67190042 CAAAGATAAG
*
67190052 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
67190066 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
67190081 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
67190096 AAGAAA
1 AAGAAA
67190102 CCCAAGATAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.60, C:0.12, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:67190110 original size:15 final size:15
Alignment explanation
Indices: 67190063--67190110 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
67190053 AGAAAACCGA
67190063 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
67190077 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
67190093 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
67190108 ATA
1 ATA
67190111 CGATACTATG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 26 0.96
16 1 0.04
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:67193765 original size:47 final size:46
Alignment explanation
Indices: 67193650--67193802 Score: 171
Period size: 47 Copynumber: 3.2 Consensus size: 46
67193640 TGCACATAGT
* * ** * *
67193650 CACATATCACATACCGAGGCCATAGCCCAGCCATGGTCTTATACGGAT
1 CACATATCAC--ACCGATGCCATATCCCAGATATGGTCTTATACGAAC
* * * *
67193698 CACATATCACACTGATGCCATATCCCAGATATAGTCTTATACAGTAG
1 CACATATCACACCGATGCCATATCCCAGATATGGTCTTATAC-GAAC
*
67193745 CACATATCACACCGATGCCATATCCCGGATATGGTCTTATACGGAAC
1 CACATATCACACCGATGCCATATCCCAGATATGGTCTTATAC-GAAC
67193792 CACATATCACA
1 CACATATCACA
67193803 TTTCTCCGAA
Statistics
Matches: 90, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
46 26 0.29
47 54 0.60
48 10 0.11
ACGTcount: A:0.32, C:0.29, G:0.15, T:0.24
Consensus pattern (46 bp):
CACATATCACACCGATGCCATATCCCAGATATGGTCTTATACGAAC
Found at i:67200977 original size:48 final size:48
Alignment explanation
Indices: 67200925--67201020 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
67200915 GGATCAATTG
67200925 ATGACATGAAAAGTACCTTAGGGTATCTATTTACCCTTGGATCAGCTA
1 ATGACATGAAAAGTACCTTAGGGTATCTATTTACCCTTGGATCAGCTA
67200973 ATGACATGAAAAGTACCTTAGGGTATCTATTTACCCTTGGATCAGCTA
1 ATGACATGAAAAGTACCTTAGGGTATCTATTTACCCTTGGATCAGCTA
67201021 TTTTCTGTTA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (48 bp):
ATGACATGAAAAGTACCTTAGGGTATCTATTTACCCTTGGATCAGCTA
Found at i:67202005 original size:10 final size:10
Alignment explanation
Indices: 67201990--67202014 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
67201980 TTGACCTCTA
67201990 AAATTTAACC
1 AAATTTAACC
67202000 AAATTTAACC
1 AAATTTAACC
67202010 AAATT
1 AAATT
67202015 AGATATATTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.52, C:0.16, G:0.00, T:0.32
Consensus pattern (10 bp):
AAATTTAACC
Found at i:67204314 original size:15 final size:15
Alignment explanation
Indices: 67204294--67204324 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
67204284 ATTCATTTTA
67204294 ATTCTTTATGTATTT
1 ATTCTTTATGTATTT
67204309 ATTCTTTATGTATTT
1 ATTCTTTATGTATTT
67204324 A
1 A
67204325 CTTGTTAGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.06, G:0.06, T:0.65
Consensus pattern (15 bp):
ATTCTTTATGTATTT
Found at i:67204646 original size:12 final size:12
Alignment explanation
Indices: 67204602--67204648 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
67204592 TATTTTGTCA
67204602 TTATTATTATT-T
1 TTATT-TTATTAT
*
67204614 TTATCATTATTAT
1 TTAT-TTTATTAT
*
67204627 TTACTTTATTAT
1 TTATTTTATTAT
67204639 TTATTTTATT
1 TTATTTTATT
67204649 TTTCTTTGAT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
12 25 0.86
13 4 0.14
ACGTcount: A:0.26, C:0.04, G:0.00, T:0.70
Consensus pattern (12 bp):
TTATTTTATTAT
Found at i:67208199 original size:42 final size:42
Alignment explanation
Indices: 67208152--67208311 Score: 178
Period size: 42 Copynumber: 3.6 Consensus size: 42
67208142 GCATCAGTGA
* *
67208152 GATATGTGATTACGTGTAAGACCACAGCTGGGCTATGGCATC
1 GATATGTGAATACGTGTAAGACCATAGCTGGGCTATGGCATC
*
67208194 GATATGTGATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCTTC
1 GATATGTG--A----A-TACGTGTAAGACCATAGCTGGGCTATGGCATC
* *
67208243 GATATGTGAATATGTGTGAGACCATAGCTGGGCTATGGCATC
1 GATATGTGAATACGTGTAAGACCATAGCTGGGCTATGGCATC
* *
67208285 -ATTATGTGAAGATGTGTAAGACCATAG
1 GA-TATGTGAATACGTGTAAGACCATAG
67208312 TTGAACTATG
Statistics
Matches: 102, Mismatches: 8, Indels: 16
0.81 0.06 0.13
Matches are distributed among these distances:
41 1 0.01
42 60 0.59
43 1 0.01
44 1 0.01
47 1 0.01
49 38 0.37
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.29
Consensus pattern (42 bp):
GATATGTGAATACGTGTAAGACCATAGCTGGGCTATGGCATC
Found at i:67208222 original size:49 final size:49
Alignment explanation
Indices: 67208000--67208258 Score: 240
Period size: 47 Copynumber: 5.2 Consensus size: 49
67207990 CCATGGCAAC
* * * *
67208000 ATGTGATATGAGATTTCCGTATAAGACTATAGCTGGGCTATGGCATCAGAGAG
1 ATGTGATATGTGA-TTACGTATAAGACCATAGCTGGGCTATGGCATC---GAT
* * * * *
67208053 ATGTGATTATGTGCTTCCGTATAATACCATATCTGGGATATGGCATC--T
1 ATGTGA-TATGTGATTACGTATAAGACCATAGCTGGGCTATGGCATCGAT
* * * * *
67208101 GTGTGATATATG-CTACTGTATAAGACCATATCTGGGATATGGCATC-A-
1 ATGTGATATGTGATTAC-GTATAAGACCATAGCTGGGCTATGGCATCGAT
* * * *
67208148 GTGAGATATGTGATTACGTGTAAGACCACAGCTGGGCTATGGCATCGAT
1 ATGTGATATGTGATTACGTATAAGACCATAGCTGGGCTATGGCATCGAT
* *
67208197 ATGTGATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCTTCGAT
1 ATGTGATATGTGATTACGTATAAGACCATAGCTGGGCTATGGCATCGAT
67208246 ATGTGAATATGTG
1 ATGTG-ATATGTG
67208259 TGAGACCATA
Statistics
Matches: 176, Mismatches: 23, Indels: 17
0.81 0.11 0.08
Matches are distributed among these distances:
46 2 0.01
47 68 0.39
48 9 0.05
49 50 0.28
50 7 0.04
53 35 0.20
54 5 0.03
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.32
Consensus pattern (49 bp):
ATGTGATATGTGATTACGTATAAGACCATAGCTGGGCTATGGCATCGAT
Found at i:67209514 original size:19 final size:20
Alignment explanation
Indices: 67209462--67209506 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 20
67209452 ACCTCTTTTT
*
67209462 TGCATT-CATTTCATCCATC
1 TGCATTACATTTCATCCATA
67209481 TGCATTACATTTCAT-CATA
1 TGCATTACATTTCATCCATA
67209500 TGCATTA
1 TGCATTA
67209507 AGTTTCATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 16 0.67
20 8 0.33
ACGTcount: A:0.27, C:0.24, G:0.07, T:0.42
Consensus pattern (20 bp):
TGCATTACATTTCATCCATA
Found at i:67217654 original size:44 final size:43
Alignment explanation
Indices: 67217591--67217892 Score: 223
Period size: 44 Copynumber: 6.9 Consensus size: 43
67217581 CATCGTGGTG
* * * *
67217591 AATCTTATCTCCCTAAAGTTGTAGTGGAACAGATTAAGGCCACA
1 AATCTTATCTCCTTGAAGTTGTAGTGGAGCAGATTAA-GCTACA
* *
67217635 AATCTTATCTCCTTGAAGTTATAGTGGAGCAGATTGAAGATAGCA
1 AATCTTATCTCCTTGAAGTTGTAGTGGAGCAGATT-AAGCTA-CA
* * * *
67217680 AATCTTATCT-CTCTAAAGTTGTGGTAGAGCAGATTAAAGCTATA
1 AATCTTATCTCCT-TGAAGTTGTAGTGGAGCAGATT-AAGCTACA
* * *
67217724 AACCTTATCTCCTTGAAGTTGTAGTGGAGCAGGTTGAAGTTACA
1 AATCTTATCTCCTTGAAGTTGTAGTGGAGCAGATT-AAGCTACA
* * * * * * *
67217768 AACCTTATCT-CTTGAATTTTTAGTGGAGTAGGTTGAAGTTAAA
1 AATCTTATCTCCTTGAAGTTGTAGTGGAGCAGATT-AAGCTACA
* * * * * *
67217811 AATCTTATCTCCCTGAAATTG-CGTTGGAGCAGATAGAAGACAATA
1 AATCTTATCTCCTTGAAGTTGTAG-TGGAGCAGAT-TAAG-CTACA
* * * *
67217856 AATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAA
1 AATCTTATCTCCTTGAAGTTGTAGTGGAGCAGATTAA
67217893 AGTTATAAAC
Statistics
Matches: 208, Mismatches: 41, Indels: 18
0.78 0.15 0.07
Matches are distributed among these distances:
43 39 0.19
44 99 0.48
45 69 0.33
46 1 0.00
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (43 bp):
AATCTTATCTCCTTGAAGTTGTAGTGGAGCAGATTAAGCTACA
Found at i:67217713 original size:89 final size:88
Alignment explanation
Indices: 67217591--67217779 Score: 261
Period size: 89 Copynumber: 2.1 Consensus size: 88
67217581 CATCGTGGTG
* * * *
67217591 AATCTTATCTCCCTAAAGTTGTAGTGGAACAGATTAAGGCCACAAATCTTATCTCCTTGAAGTTA
1 AATCTTATCTCTCTAAAGTTGTAGTAGAACAGATTAAAGCCACAAACCTTATCTCCTTGAAGTTA
67217656 TAGTGGAGCAGATTGAAGATAGCA
66 TAGTGGAGCAGATTGAAGATA-CA
* * * * *
67217680 AATCTTATCTCTCTAAAGTTGTGGTAGAGCAGATTAAAGCTATAAACCTTATCTCCTTGAAGTTG
1 AATCTTATCTCTCTAAAGTTGTAGTAGAACAGATTAAAGCCACAAACCTTATCTCCTTGAAGTTA
* *
67217745 TAGTGGAGCAGGTTGAAGTTACA
66 TAGTGGAGCAGATTGAAGATACA
*
67217768 AACCTTATCTCT
1 AATCTTATCTCT
67217780 TGAATTTTTA
Statistics
Matches: 88, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
88 13 0.15
89 75 0.85
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.32
Consensus pattern (88 bp):
AATCTTATCTCTCTAAAGTTGTAGTAGAACAGATTAAAGCCACAAACCTTATCTCCTTGAAGTTA
TAGTGGAGCAGATTGAAGATACA
Found at i:67217985 original size:44 final size:44
Alignment explanation
Indices: 67217922--67218032 Score: 132
Period size: 44 Copynumber: 2.5 Consensus size: 44
67217912 TATCTTCTTG
* * * *
67217922 AAGTTACAATGAAGAAGATTGAAGATACGAGTCTCATCTCCCTA
1 AAGTTACAGTGGAGAAGATTGAAGATACAAGTCTAATCTCCCTA
* * * * *
67217966 AAGTTACAGTGGAGCAGATTAAAGCTATAAGTCTAATCTCCCTG
1 AAGTTACAGTGGAGAAGATTGAAGATACAAGTCTAATCTCCCTA
*
67218010 AAGTTACAGTGGAGTAGATTGAA
1 AAGTTACAGTGGAGAAGATTGAA
67218033 ACACTAATTC
Statistics
Matches: 56, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 56 1.00
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.26
Consensus pattern (44 bp):
AAGTTACAGTGGAGAAGATTGAAGATACAAGTCTAATCTCCCTA
Found at i:67218745 original size:32 final size:28
Alignment explanation
Indices: 67218702--67218764 Score: 81
Period size: 32 Copynumber: 2.1 Consensus size: 28
67218692 TTCATTTTTT
67218702 AAAAAGAAAATAGACACGAAAAAGCAATCA
1 AAAAAGAAAATAGACACGAAAAA--AATCA
*
67218732 AAAATAGAGAAATAGAGACGAAAAAAATCA
1 AAAA-AGA-AAATAGACACGAAAAAAATCA
67218762 AAA
1 AAA
67218765 GAGGAAGACA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
30 12 0.40
31 3 0.10
32 15 0.50
ACGTcount: A:0.68, C:0.10, G:0.14, T:0.08
Consensus pattern (28 bp):
AAAAAGAAAATAGACACGAAAAAAATCA
Found at i:67219609 original size:3 final size:3
Alignment explanation
Indices: 67219601--67219628 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
67219591 CGTTAGCTTA
67219601 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
67219629 TAAAACTGTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:67233346 original size:24 final size:24
Alignment explanation
Indices: 67233314--67233363 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
67233304 AAGAAGAGGA
*
67233314 TGCTTAATTGGATAAAAGAAAATT
1 TGCTCAATTGGATAAAAGAAAATT
*
67233338 TGCTCAATTGTATAAAAGAAAATT
1 TGCTCAATTGGATAAAAGAAAATT
67233362 TG
1 TG
67233364 ACAAACTCCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.44, C:0.06, G:0.16, T:0.34
Consensus pattern (24 bp):
TGCTCAATTGGATAAAAGAAAATT
Found at i:67242127 original size:34 final size:34
Alignment explanation
Indices: 67242084--67242150 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
67242074 TTTTTTCTTT
*
67242084 TTATTCTGTCACGGTTGGAGTCGTGGGCACGACC
1 TTATTCTGTCACGGCTGGAGTCGTGGGCACGACC
67242118 TTATTCTGTCACGGCTGGAGTCGTGGGCACGAC
1 TTATTCTGTCACGGCTGGAGTCGTGGGCACGAC
67242151 GCTGGGCACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.15, C:0.24, G:0.33, T:0.28
Consensus pattern (34 bp):
TTATTCTGTCACGGCTGGAGTCGTGGGCACGACC
Found at i:67244307 original size:20 final size:21
Alignment explanation
Indices: 67244264--67244309 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
67244254 AATGTTTTGT
67244264 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
*
67244284 -ATGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
67244303 TATGGGC
1 TATGGGC
67244310 AAGGCCCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Found at i:67252041 original size:29 final size:29
Alignment explanation
Indices: 67252008--67252063 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
67251998 TCACTCAACT
* *
67252008 ATAAAAAATTTTCATTTTAAGCACCCAAA
1 ATAAAAAATTTGCAATTTAAGCACCCAAA
*
67252037 ATAAAAAGTTTGCAATTTAAGCACCCA
1 ATAAAAAATTTGCAATTTAAGCACCCA
67252064 CGTTACATAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.46, C:0.18, G:0.07, T:0.29
Consensus pattern (29 bp):
ATAAAAAATTTGCAATTTAAGCACCCAAA
Found at i:67262064 original size:27 final size:27
Alignment explanation
Indices: 67262034--67262120 Score: 74
Period size: 27 Copynumber: 3.3 Consensus size: 27
67262024 TCAAAATAAT
* *
67262034 TTTAAAAT-TTTTTAAATAATTTTAAAA
1 TTTAAAATATTTATAAA-AATTTCAAAA
67262061 TTTAAAATATTTATAAAAATTTCAAAA
1 TTTAAAATATTTATAAAAATTTCAAAA
* * *
67262088 -CT-ATATATTT-TAAAAAATTATAAAAA
1 TTTAAAATATTTAT-AAAAATT-TCAAAA
67262114 TTTAAAA
1 TTTAAAA
67262121 GAATACATAA
Statistics
Matches: 48, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
24 1 0.02
25 14 0.29
26 6 0.12
27 18 0.38
28 9 0.19
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (27 bp):
TTTAAAATATTTATAAAAATTTCAAAA
Found at i:67262120 original size:17 final size:17
Alignment explanation
Indices: 67262044--67262120 Score: 59
Period size: 17 Copynumber: 4.4 Consensus size: 17
67262034 TTTAAAATTT
*
67262044 TTTAAATAATT-TTAAAA
1 TTTAAA-AATTATAAAAA
67262061 TTTAAAATATTTATAAAAA
1 TTTAAAA-A-TTATAAAAA
* * * *
67262080 TTTCAAAACTAT-ATAT
1 TTTAAAAATTATAAAAA
67262096 TTTAAAAAATTATAAAAA
1 TTT-AAAAATTATAAAAA
67262114 TTTAAAA
1 TTTAAAA
67262121 GAATACATAA
Statistics
Matches: 46, Mismatches: 9, Indels: 10
0.71 0.14 0.15
Matches are distributed among these distances:
16 6 0.13
17 21 0.46
18 8 0.17
19 11 0.24
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.42
Consensus pattern (17 bp):
TTTAAAAATTATAAAAA
Found at i:67264592 original size:46 final size:45
Alignment explanation
Indices: 67264539--67264714 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
67264529 TATTTGGGCA
67264539 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
67264585 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
67264632 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
67264678 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67264715 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:67264694 original size:93 final size:93
Alignment explanation
Indices: 67264535--67264707 Score: 310
Period size: 93 Copynumber: 1.9 Consensus size: 93
67264525 AGGATATTTG
* *
67264535 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
67264600 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
67264628 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
67264693 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
67264708 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:67267006 original size:46 final size:45
Alignment explanation
Indices: 67266870--67267032 Score: 129
Period size: 46 Copynumber: 3.6 Consensus size: 45
67266860 ATGCCGATTC
* * * *
67266870 CATGTCCCAGACATGGTCTTACACTG-ACACATCTC-CTAGCGATG
1 CATGTCCCAGACATAGTCTTACACTGCACTCGTCTCAC-ACCGATG
* * * * ** *
67266914 CATGTCCCAGACAT-GTCTTAGATTGGC-TTACGTTTCGAGGCTGATG
1 CATGTCCCAGACATAGTCTTACACT-GCACT-CGTCTC-ACACCGATG
67266960 CATGTCCCAGACAT-GTCTTACACTAGCACTCGTCTCAACACCGATG
1 CATGTCCCAGACATAGTCTTACACT-GCACTCGTCTC-ACACCGATG
67267006 CCATGTCCCAGACATAGTCTTACACTG
1 -CATGTCCCAGACATAGTCTTACACTG
67267033 GCTCACACCA
Statistics
Matches: 92, Mismatches: 19, Indels: 13
0.74 0.15 0.10
Matches are distributed among these distances:
43 8 0.09
44 15 0.16
45 4 0.04
46 39 0.42
47 16 0.17
48 10 0.11
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (45 bp):
CATGTCCCAGACATAGTCTTACACTGCACTCGTCTCACACCGATG
Found at i:67270986 original size:21 final size:21
Alignment explanation
Indices: 67270962--67271006 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
67270952 CATGGGCATA
* * *
67270962 TGTCCTCTCTACATGGGTGTG
1 TGTCCTCTCCACACGGGAGTG
67270983 TGTCCTCTCCACACGGGAGTG
1 TGTCCTCTCCACACGGGAGTG
67271004 TGT
1 TGT
67271007 GGCCTTCACA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.11, C:0.27, G:0.29, T:0.33
Consensus pattern (21 bp):
TGTCCTCTCCACACGGGAGTG
Found at i:67272545 original size:30 final size:28
Alignment explanation
Indices: 67272506--67272563 Score: 89
Period size: 30 Copynumber: 2.0 Consensus size: 28
67272496 ATGGATTTAA
67272506 ATTACTTATTATTTAAGTAAATAGATATTT
1 ATTACTTATTA-TTAAGTAAA-AGATATTT
*
67272536 ATTATTTATTATTAAGTAAAAGATATTT
1 ATTACTTATTATTAAGTAAAAGATATTT
67272564 TTTAATTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 8 0.30
29 9 0.33
30 10 0.37
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.50
Consensus pattern (28 bp):
ATTACTTATTATTAAGTAAAAGATATTT
Found at i:67273911 original size:39 final size:39
Alignment explanation
Indices: 67273863--67274013 Score: 185
Period size: 39 Copynumber: 3.9 Consensus size: 39
67273853 TTAATCGGGG
*
67273863 TAAACTACTGTACTGAATGATTGATAGTTACTGAATAAC
1 TAAACTACTGTACTGAATAATTGATAGTTACTGAATAAC
* * * * *
67273902 TAAATTACTGTATTAAATAATTGATAGTTATTGAATAAA
1 TAAACTACTGTACTGAATAATTGATAGTTACTGAATAAC
* * * *
67273941 TAAACTACTGCACTGAATATTTGATAGTTACTAAATGAC
1 TAAACTACTGTACTGAATAATTGATAGTTACTGAATAAC
* * *
67273980 TAAATTACTGTACCGAATAATTGATTGTTACTGA
1 TAAACTACTGTACTGAATAATTGATAGTTACTGA
67274014 TTAAATATGA
Statistics
Matches: 91, Mismatches: 21, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
39 91 1.00
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.36
Consensus pattern (39 bp):
TAAACTACTGTACTGAATAATTGATAGTTACTGAATAAC
Found at i:67273999 original size:78 final size:78
Alignment explanation
Indices: 67273863--67274020 Score: 219
Period size: 78 Copynumber: 2.0 Consensus size: 78
67273853 TTAATCGGGG
* * **
67273863 TAAACTACTGTACTGAATGATTGATAGTTACTGAATAACTAAATTACTGTATTAAATAATTGATA
1 TAAACTACTGCACTGAATGATTGATAGTTACTAAATAACTAAATTACTGTACCAAATAATTGATA
*
67273928 GTTATTGAATAAA
66 GTTACTGAATAAA
* *
67273941 TAAACTACTGCACTGAAT-ATTTGATAGTTACTAAATGACTAAATTACTGTACCGAATAATTGAT
1 TAAACTACTGCACTGAATGA-TTGATAGTTACTAAATAACTAAATTACTGTACCAAATAATTGAT
* *
67274005 TGTTACTGATTAAA
65 AGTTACTGAATAAA
67274019 TA
1 TA
67274021 TGATTAGAAT
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
77 1 0.01
78 69 0.99
ACGTcount: A:0.41, C:0.10, G:0.13, T:0.37
Consensus pattern (78 bp):
TAAACTACTGCACTGAATGATTGATAGTTACTAAATAACTAAATTACTGTACCAAATAATTGATA
GTTACTGAATAAA
Found at i:67279824 original size:40 final size:40
Alignment explanation
Indices: 67279759--67280004 Score: 386
Period size: 40 Copynumber: 6.2 Consensus size: 40
67279749 GGACTAAGAT
* * *
67279759 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* *
67279799 TCGAAGGCATTTGTACGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
67279839 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
67279879 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
67279919 CCGAAGGCATTTGTGCGATTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* ** *
67279959 CCGAAGGCATTTGTGCGTGTTGTTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
67279998 CCAAAGG
1 CCGAAGG
67280005 TACTTGGGTT
Statistics
Matches: 192, Mismatches: 14, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
39 14 0.07
40 178 0.93
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:67287833 original size:40 final size:40
Alignment explanation
Indices: 67287768--67288013 Score: 377
Period size: 40 Copynumber: 6.2 Consensus size: 40
67287758 GGACTAAGAT
* * *
67287768 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* * *
67287808 TCGAAGGCATTTGTACGAGTTACTATAGCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
67287848 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
67287888 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
67287928 CCGAAGGCATTTGTGCGATTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* ** * *
67287968 CCGAAGGCATTTGTGTGAGTTGTTATAT-CTGGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
67288007 CCGAAGG
1 CCGAAGG
67288014 TACTTGGGTT
Statistics
Matches: 190, Mismatches: 16, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
39 16 0.08
40 174 0.92
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:67291278 original size:30 final size:28
Alignment explanation
Indices: 67291239--67291300 Score: 97
Period size: 28 Copynumber: 2.1 Consensus size: 28
67291229 ATGGATTTAA
67291239 ATTACTTATTATTTAAGTAAATAGATATTT
1 ATTACTTATTA-TTAAGTAAA-AGATATTT
*
67291269 ATTATTTATTATTAAGTAAAAGATATTT
1 ATTACTTATTATTAAGTAAAAGATATTT
67291297 ATTA
1 ATTA
67291301 ATTAAGTAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 12 0.39
29 9 0.29
30 10 0.32
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (28 bp):
ATTACTTATTATTAAGTAAAAGATATTT
Found at i:67292410 original size:44 final size:44
Alignment explanation
Indices: 67292361--67292452 Score: 125
Period size: 44 Copynumber: 2.1 Consensus size: 44
67292351 TGTTCAGGGA
67292361 TACTTCGACCTTGAGTCGATG-AGGCA-CTATAAGTGTCGTACTGT
1 TACTTCGACCTTGAGTCGATGTA-GCATCT-TAAGTGTCGTACTGT
* **
67292405 TACTTCGACTTTGAGTCGATGTAGCATCTTGTGTGTCGTACTGT
1 TACTTCGACCTTGAGTCGATGTAGCATCTTAAGTGTCGTACTGT
67292449 TACT
1 TACT
67292453 GTTACTTCAG
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
44 40 0.93
45 3 0.07
ACGTcount: A:0.20, C:0.20, G:0.24, T:0.37
Consensus pattern (44 bp):
TACTTCGACCTTGAGTCGATGTAGCATCTTAAGTGTCGTACTGT
Found at i:67292643 original size:39 final size:39
Alignment explanation
Indices: 67292595--67292736 Score: 203
Period size: 39 Copynumber: 3.6 Consensus size: 39
67292585 TTAATAGGGG
* * *
67292595 TAAAATACTGTACTCAATAATTGATTGTTACTGAATAAC
1 TAAATTACTGTACTGAATAATTGATAGTTACTGAATAAC
* *
67292634 TAAATTACTGTATTGAATAATTGATAGTTATTGAATAAC
1 TAAATTACTGTACTGAATAATTGATAGTTACTGAATAAC
* * *
67292673 TAAACTACTGTACTGAATATTTGATAGTTACTGAATGAC
1 TAAATTACTGTACTGAATAATTGATAGTTACTGAATAAC
*
67292712 TAAATTACTGTACTGAATAACTGAT
1 TAAATTACTGTACTGAATAATTGAT
67292737 TGTTGCTTAT
Statistics
Matches: 90, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 90 1.00
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (39 bp):
TAAATTACTGTACTGAATAATTGATAGTTACTGAATAAC
Found at i:67294310 original size:12 final size:12
Alignment explanation
Indices: 67294277--67294310 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
67294267 AGGGTACACG
67294277 GGCACGGGCACA
1 GGCACGGGCACA
*
67294289 GGCACAGGCACA
1 GGCACGGGCACA
*
67294301 GGCATGGGCA
1 GGCACGGGCA
67294311 TGGGCACAGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.26, C:0.29, G:0.41, T:0.03
Consensus pattern (12 bp):
GGCACGGGCACA
Found at i:67306336 original size:42 final size:46
Alignment explanation
Indices: 67306273--67306740 Score: 351
Period size: 48 Copynumber: 10.0 Consensus size: 46
67306263 CTTCGTTTTC
** *
67306273 TCGATGCCATAGTTCAACTATGGTCTTACAC-AT-C-T-TCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACGATACATATCACAT-A
* *
67306316 T-GATGCCATAGTCCAGCTATGGCCTTACAC-AT-C-T-TCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACGATACATATCACAT-A
* * *
67306358 T-GATGCCATAGTCCAACTATGGTCTTACAC-AT--AT-TCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACGATACATATCACATA
* *
67306399 TCGATGCCATAGCCAAGCTATGGTCTTACACGTAATCACATATCACATG
1 TCGATGCCATAGCCCAGCTATGGTCTTACACG--AT-ACATATCACATA
67306448 TCGATGCCATAGCCCAGCTATGGTCTTACACGGATCACATATCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC-GAT-ACATATCACATA
67306496 TCGATGCCATAGCCCAGCTATGGTCTTACACGGATCACATATCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC-GAT-ACATATCACATA
* *
67306544 TCGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCTCA-C
1 TCGATGCCATAGCCCAGCTATGGTCTTACACG-AT-ACATATCACATA
* * * ** * *
67306591 T-GATGTCATATCCAAAATATGGTCTTATAC-AGTAGCATAT-ATCACA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACGA-TA-CATATCA-CATA
* * * * * *
67306637 CCGATGCCATATCCCAGATATGGTCTTATACGCAAGCACATAATCACATCTT
1 TCGATGCCATAGCCCAGCTATGGTCTTACACG--A-TACAT-ATCACA--TA
*
67306689 TCCGATGCCATAGCCCAGCTATGGTCTTATACAGAAATCACATATCACATA
1 T-CGATGCCATAGCCCAGCTATGGTCTTACAC-G--AT-ACATATCACATA
67306740 T
1 T
67306741 TGTCATGGTC
Statistics
Matches: 363, Mismatches: 36, Indels: 44
0.82 0.08 0.10
Matches are distributed among these distances:
41 2 0.01
42 100 0.28
43 1 0.00
44 2 0.01
45 10 0.03
46 23 0.06
47 28 0.08
48 107 0.29
49 38 0.10
50 8 0.02
51 3 0.01
53 34 0.09
54 7 0.02
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.28
Consensus pattern (46 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACGATACATATCACATA
Found at i:67306418 original size:84 final size:87
Alignment explanation
Indices: 67306273--67306586 Score: 338
Period size: 84 Copynumber: 3.5 Consensus size: 87
67306263 CTTCGTTTTC
** *
67306273 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAAT-GATGCCATAGTCCAGCTATG
1 TCGATGCCATAGCCCAACTATGGTCTTACACATATTCACAT-ATCGATGCCATAG-CCAGCTATG
*
67306337 GCCTTACAC-AT-C-T-TCACATAA
64 GTCTTACACGATACATATCACAT-A
* *
67306358 T-GATGCCATAGTCCAACTATGGTCTTACACATATTCATATATCGATGCCATAGCCAAGCTATGG
1 TCGATGCCATAGCCCAACTATGGTCTTACACATATTCACATATCGATGCCATAGCC-AGCTATGG
*
67306422 TCTTACACGTAATCACATATCACATG
65 TCTTACACG--AT-ACATATCACATA
*
67306448 TCGATGCCATAGCCCAGCTATGGTCTTACACGGATCACATATCACATATCGATGCCATAGCCCAG
1 TCGATGCCATAGCCCAACTATGGTCTTACAC--AT---AT-TCACATATCGATGCCATAG-CCAG
67306513 CTATGGTCTTACACGGATCACATATCACATA
59 CTATGGTCTTACAC-GAT-ACATATCACATA
*
67306544 TCGATGCCATAGCCCAGCTATGGTCTTACACGA-A-TCACATATC
1 TCGATGCCATAGCCCAACTATGGTCTTACAC-ATATTCACATATC
67306587 TCACTGATGT
Statistics
Matches: 202, Mismatches: 9, Indels: 32
0.83 0.04 0.13
Matches are distributed among these distances:
83 4 0.02
84 61 0.30
85 1 0.00
87 2 0.01
89 10 0.05
90 2 0.01
91 34 0.17
93 2 0.01
95 2 0.01
96 47 0.23
97 34 0.17
98 3 0.01
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (87 bp):
TCGATGCCATAGCCCAACTATGGTCTTACACATATTCACATATCGATGCCATAGCCAGCTATGGT
CTTACACGATACATATCACATA
Found at i:67306504 original size:48 final size:48
Alignment explanation
Indices: 67306385--67306740 Score: 387
Period size: 48 Copynumber: 7.3 Consensus size: 48
67306375 TATGGTCTTA
* *
67306385 CACATATTCATATATCGATGCCATAGCCAAGCTATGGTCTTACACGTAAT
1 CACATA-TCACATATCGATGCCATAGCCCAGCTATGGTCTTACACG-AAT
* *
67306435 CACATATCACATGTCGATGCCATAGCCCAGCTATGGTCTTACACGGAT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
*
67306483 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGGAT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
67306531 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
* * * * * ** * * *
67306579 CACATATCTCA-CT-GATGTCATATCCAAAATATGGTCTTATACAGTAG
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACAC-GAAT
* * * * * *
67306626 CATATATCAC--ACCGATGCCATATCCCAGATATGGTCTTATACGCAAG
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACG-AAT
* *
67306673 CACATAATCACATCTTTCCGATGCCATAGCCCAGCTATGGTCTTATACAGAAAT
1 CACAT-ATCACA--TAT-CGATGCCATAGCCCAGCTATGGTCTTACAC-G-AAT
67306727 CACATATCACATAT
1 CACATATCACATAT
67306741 TGTCATGGTC
Statistics
Matches: 264, Mismatches: 32, Indels: 19
0.84 0.10 0.06
Matches are distributed among these distances:
46 24 0.09
47 43 0.16
48 111 0.42
49 36 0.14
50 6 0.02
51 2 0.01
53 34 0.13
54 8 0.03
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (48 bp):
CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
Found at i:67306717 original size:53 final size:53
Alignment explanation
Indices: 67306607--67306738 Score: 152
Period size: 53 Copynumber: 2.6 Consensus size: 53
67306597 CATATCCAAA
* * *
67306607 ATATGGTCTTATACAG-TAGCATATATCACA-----CCGATGCCATATCCCAG
1 ATATGGTCTTATACAGAAAGCACATATCACATCTTTCCGATGCCATAGCCCAG
*
67306654 ATATGGTCTTATAC-GCAAGCACATAATCACATCTTTCCGATGCCATAGCCCAG
1 ATATGGTCTTATACAGAAAGCACAT-ATCACATCTTTCCGATGCCATAGCCCAG
* *
67306707 CTATGGTCTTATACAGAAATCACATATCACAT
1 ATATGGTCTTATACAGAAAGCACATATCACAT
67306739 ATTGTCATGG
Statistics
Matches: 71, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
46 1 0.01
47 20 0.28
48 6 0.08
53 36 0.51
54 8 0.11
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.28
Consensus pattern (53 bp):
ATATGGTCTTATACAGAAAGCACATATCACATCTTTCCGATGCCATAGCCCAG
Found at i:67310608 original size:40 final size:40
Alignment explanation
Indices: 67310553--67310777 Score: 308
Period size: 40 Copynumber: 5.6 Consensus size: 40
67310543 TGTTCGGATG
*
67310553 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTCCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
67310593 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
67310633 ATATCCGGGCGAAGTCCTGAAGGCATTTGTGCGAGTAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC--G-AGTTACT
* * *
67310676 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
67310716 ATATCCGGGCTAAGACCCGAAGGCATTTGTGTGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
67310756 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
67310778 TACTTGGGTT
Statistics
Matches: 162, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 14 0.09
40 113 0.70
43 35 0.22
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:67310796 original size:83 final size:80
Alignment explanation
Indices: 67310553--67310777 Score: 335
Period size: 83 Copynumber: 2.8 Consensus size: 80
67310543 TGTTCGGATG
* *
67310553 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTCCTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGAGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
67310618 TTTGTGCTAGTGACT
66 TTTGTGCTAGTGACT
* * *
67310633 ATATCCGGGCGAAGTCCTGAAGGCATTTGTGCGAGTAGTTACTATACCCGGGCTAAGTCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGT--GAG-AGTTACTATATCCGGGCTAAGTCCCGAAG
67310698 GCATTTGTGCTAGTGACT
63 GCATTTGTGCTAGTGACT
* * * *
67310716 ATATCCGGGCTAAGACCCGAAGGCATTTGTGTGAGTTGCTATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGAGAGTTACTATATCCGGGCTAAGTCCCGAAGG
67310778 TACTTGGGTT
Statistics
Matches: 130, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
79 15 0.12
80 39 0.30
81 2 0.02
82 2 0.02
83 72 0.55
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGAGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCTAGTGACT
Found at i:67318404 original size:39 final size:39
Alignment explanation
Indices: 67318313--67318527 Score: 271
Period size: 39 Copynumber: 5.6 Consensus size: 39
67318303 TATTCGGATG
*
67318313 ATATCCGGGCTAAGTCCCG-AGGCATTTGTGC-AGTTCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGCT
67318350 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGCT
* * *
67318389 ATACCCGGGCGAAGT-CCGAAGGCATTTGTTCGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-TAG-TGCT
*
67318429 ATATCCGGGCTAAGTCCCGAAGGCA-TTCTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTG-CT
* * *
67318468 ATATCCGAGCTAAGACCCGAAGGCATTTGTG-GAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGCT
*
67318507 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
67318528 ATACTTGGGT
Statistics
Matches: 155, Mismatches: 15, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
37 19 0.12
38 41 0.26
39 59 0.38
40 27 0.17
41 9 0.06
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.27
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGCT
Found at i:67318448 original size:79 final size:77
Alignment explanation
Indices: 67318317--67318527 Score: 277
Period size: 79 Copynumber: 2.7 Consensus size: 77
67318307 CGGATGATAT
*
67318317 CCGGGCTAAGTCCCG-AGGCATTTGTGCAGTT-CTATATCCGGGCTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGT-CCGAAGGCATTTGTGCAGTTGCTATATCCGGGCTAAGTCCCGAAGGCA-TTCT
67318380 GCTAGTG-CTATAC
64 GCTAGTGACTATAC
* *
67318393 CCGGGCGAAGTCCGAAGGCATTTGTTCGTAGTTGCTATATCCGGGCTAAGTCCCGAAGGCATTCT
1 CCGGGCTAAGTCCGAAGGCATTTG-T-GCAGTTGCTATATCCGGGCTAAGTCCCGAAGGCATTCT
*
67318458 GCTAGTGACTATAT
64 GCTAGTGACTATAC
* * * *
67318472 CCGAGCTAAGACCCGAAGGCATTTGTGGAGTTGCTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAG-TCCGAAGGCATTTGTGCAGTTGCTATATCCGGGCTAAGTCCCGAAG
67318528 ATACTTGGGT
Statistics
Matches: 120, Mismatches: 9, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
75 3 0.03
76 19 0.16
77 15 0.12
78 29 0.24
79 41 0.34
80 13 0.11
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.26
Consensus pattern (77 bp):
CCGGGCTAAGTCCGAAGGCATTTGTGCAGTTGCTATATCCGGGCTAAGTCCCGAAGGCATTCTGC
TAGTGACTATAC
Found at i:67318526 original size:118 final size:116
Alignment explanation
Indices: 67318313--67318527 Score: 292
Period size: 118 Copynumber: 1.8 Consensus size: 116
67318303 TATTCGGATG
* * * *
67318313 ATATCCGGGCTAAGTCCCGAGGCATTTGTGCAGTTCTATATCCGGGCTAAGTCCCGAAGGCATTT
1 ATATCCGGGCTAAGTCCCGAGGCATTTCTGCAGTACTATATCCGAGCTAAGACCCGAAGGCATTT
* *
67318378 GTGCTAGTGCTATACCCGGGCGAAGTCCGAAGGCATTTGTTCGTAGTTGCT
66 GTGCGAGTGCTATACCCGGGCGAAATCCGAAGGCATTTGTTCGTAGTTGCT
67318429 ATATCCGGGCTAAGTCCCGAAGGCA-TTCTGCTAGTGACTATATCCGAGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCG-AGGCATTTCTGC-AGT-ACTATATCCGAGCTAAGACCCGAAGGCA
* *
67318493 TTTGTG-GAGTTGCTATATCC-GGCTAAATCCCGAAG
63 TTTGTGCGAG-TGCTATACCCGGGCGAAAT-CCGAAG
67318528 ATACTTGGGT
Statistics
Matches: 86, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
116 24 0.28
117 16 0.19
118 46 0.53
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.27
Consensus pattern (116 bp):
ATATCCGGGCTAAGTCCCGAGGCATTTCTGCAGTACTATATCCGAGCTAAGACCCGAAGGCATTT
GTGCGAGTGCTATACCCGGGCGAAATCCGAAGGCATTTGTTCGTAGTTGCT
Found at i:67320690 original size:49 final size:47
Alignment explanation
Indices: 67320625--67320752 Score: 150
Period size: 49 Copynumber: 2.7 Consensus size: 47
67320615 TGTTGGGTGT
*
67320625 CAGTGTAAGACCTGTCTGGGACATGGCATC-AGCTTGGATATATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGA-CTT-GA-ATATGAAAGC
* * * * **
67320674 TAGTGTAAGACCTGTCTAGGACACGGCATCGACTTTAATATGCTAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACTTGAATATGAAAGC
67320721 CAGTGTAAGACCATGTCTGGGACATGGCATCG
1 CAGTGTAAGACC-TGTCTGGGACATGGCATCG
67320753 GCATTTGATC
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
47 18 0.27
48 18 0.27
49 30 0.45
50 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (47 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACTTGAATATGAAAGC
Found at i:67329272 original size:36 final size:36
Alignment explanation
Indices: 67329204--67329272 Score: 111
Period size: 36 Copynumber: 1.9 Consensus size: 36
67329194 TTGGTCGCAT
* *
67329204 GTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGA
1 GTGTAGTACTAAGTGCAAGCTACTACGCGTACCCGA
*
67329240 GTGTAGTACTAAGTGCAAGCTACTACGTGTACC
1 GTGTAGTACTAAGTGCAAGCTACTACGCGTACC
67329273 AGATTATTGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (36 bp):
GTGTAGTACTAAGTGCAAGCTACTACGCGTACCCGA
Found at i:67329298 original size:85 final size:85
Alignment explanation
Indices: 67329155--67329321 Score: 298
Period size: 85 Copynumber: 2.0 Consensus size: 85
67329145 GAGGTCACGT
* *
67329155 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTGC
1 GTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTAAGTGC
*
67329220 AGGCTACTATGCGTACCCGA
66 AAGCTACTATGCGTACCCGA
*
67329240 GTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTATTGGTCGCATGTGTAGTACTAAGTGC
1 GTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTAAGTGC
67329305 AAGCTACTATGCGTACC
66 AAGCTACTATGCGTACC
67329322 AGATGGCTTC
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 78 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (85 bp):
GTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTAAGTGC
AAGCTACTATGCGTACCCGA
Found at i:67335422 original size:12 final size:12
Alignment explanation
Indices: 67335405--67335437 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
67335395 CCGTGTGTGA
67335405 TACACGGTCATG
1 TACACGGTCATG
67335417 TACACGGTCATG
1 TACACGGTCATG
67335429 TACACGGTC
1 TACACGGTC
67335438 GTGTGTCCCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (12 bp):
TACACGGTCATG
Found at i:67340520 original size:6 final size:7
Alignment explanation
Indices: 67340486--67340519 Score: 59
Period size: 7 Copynumber: 4.7 Consensus size: 7
67340476 AAAATAAAAG
67340486 TTTTTTA
1 TTTTTTA
67340493 TTTTTTTA
1 -TTTTTTA
67340501 TTTTTTA
1 TTTTTTA
67340508 TTTTTTA
1 TTTTTTA
67340515 TTTTT
1 TTTTT
67340520 AATAAATAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 19 0.73
8 7 0.27
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTA
Found at i:67340561 original size:7 final size:7
Alignment explanation
Indices: 67340543--67340572 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
67340533 ATAACAAATA
67340543 ATATATT
1 ATATATT
67340550 AATATATT
1 -ATATATT
67340558 ATATATT
1 ATATATT
67340565 ATATATT
1 ATATATT
67340572 A
1 A
67340573 ATTGTCATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 15 0.68
8 7 0.32
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (7 bp):
ATATATT
Found at i:67347758 original size:48 final size:48
Alignment explanation
Indices: 67347687--67347782 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 48
67347677 TTCTTCTTCT
67347687 TCTTTGGCAGTTCTGGGCTATTGTTTCGATCAGTATGGGTAAGTGGTA
1 TCTTTGGCAGTTCTGGGCTATTGTTTCGATCAGTATGGGTAAGTGGTA
*
67347735 TCTTTGGCAGTTCTGGGCTATTGTTTCGATCAGTGTGGGTAAGTGGTA
1 TCTTTGGCAGTTCTGGGCTATTGTTTCGATCAGTATGGGTAAGTGGTA
67347783 ATCCTTCTCC
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.16, C:0.12, G:0.32, T:0.40
Consensus pattern (48 bp):
TCTTTGGCAGTTCTGGGCTATTGTTTCGATCAGTATGGGTAAGTGGTA
Found at i:67347768 original size:23 final size:23
Alignment explanation
Indices: 67347694--67347768 Score: 55
Period size: 23 Copynumber: 3.2 Consensus size: 23
67347684 TCTTCTTTGG
67347694 CAGTTCTGGGCTATTGTTTCGAT
1 CAGTTCTGGGCTATTGTTTCGAT
* * * **
67347717 CAG-TATGGG-TAAGTGGTATCTTT
1 CAGTTCTGGGCT-A-TTGTTTCGAT
67347740 GGCAGTTCTGGGCTATTGTTTCGAT
1 --CAGTTCTGGGCTATTGTTTCGAT
67347765 CAGT
1 CAGT
67347769 GTGGGTAAGT
Statistics
Matches: 36, Mismatches: 10, Indels: 12
0.62 0.17 0.21
Matches are distributed among these distances:
21 1 0.03
22 6 0.17
23 13 0.36
25 9 0.25
26 6 0.17
27 1 0.03
ACGTcount: A:0.16, C:0.15, G:0.29, T:0.40
Consensus pattern (23 bp):
CAGTTCTGGGCTATTGTTTCGAT
Found at i:67349002 original size:34 final size:34
Alignment explanation
Indices: 67348955--67349030 Score: 125
Period size: 34 Copynumber: 2.2 Consensus size: 34
67348945 ATTGCATTTT
*
67348955 CTGATACTGTTATTGTAATGGGCTAAAGCCCACA
1 CTGATACTATTATTGTAATGGGCTAAAGCCCACA
*
67348989 CTGATACTATTATTGTAATGGGCTAAGGCCCACA
1 CTGATACTATTATTGTAATGGGCTAAAGCCCACA
*
67349023 TTGATACT
1 CTGATACT
67349031 GGATTGTAAC
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.32
Consensus pattern (34 bp):
CTGATACTATTATTGTAATGGGCTAAAGCCCACA
Found at i:67349466 original size:40 final size:40
Alignment explanation
Indices: 67349411--67349490 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
67349401 CGCAAGAAAG
*
67349411 AATGTTTTCGATAACTAATAAGAATTCAACATACTTGACA
1 AATGTTTTCGATAACTAATAACAATTCAACATACTTGACA
67349451 AATGTTTTCGATAACTAATAACAATTCAACATACTTGACA
1 AATGTTTTCGATAACTAATAACAATTCAACATACTTGACA
67349491 TTTGTCTAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.42, C:0.16, G:0.09, T:0.33
Consensus pattern (40 bp):
AATGTTTTCGATAACTAATAACAATTCAACATACTTGACA
Found at i:67359316 original size:34 final size:34
Alignment explanation
Indices: 67359264--67359340 Score: 109
Period size: 34 Copynumber: 2.3 Consensus size: 34
67359254 GTTGTATTTT
*
67359264 CTGATACTATTATCGTAATGGGCTAAAGCCCACA
1 CTGATACTGTTATCGTAATGGGCTAAAGCCCACA
* * **
67359298 TTGATACTGTTATTGTAATGGGCTAGGGCCCACA
1 CTGATACTGTTATCGTAATGGGCTAAAGCCCACA
67359332 CTGATACTG
1 CTGATACTG
67359341 GACTATAACT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (34 bp):
CTGATACTGTTATCGTAATGGGCTAAAGCCCACA
Found at i:67370146 original size:43 final size:43
Alignment explanation
Indices: 67370098--67370252 Score: 149
Period size: 43 Copynumber: 3.7 Consensus size: 43
67370088 TGTTCTCAAC
*
67370098 TAAGACCACGTTTGGGACGTTGGCATTGATATGTGAATACGTG
1 TAAGACCACGTCTGGGACGTTGGCATTGATATGTGAATACGTG
* * * * * * *
67370141 TAAGACCATGT-TCGGGACATTGGTATCG-TATTTG-GTTCGTG
1 TAAGACCACGTCT-GGGACGTTGGCATTGATATGTGAATACGTG
* * *
67370182 TAAGACC-CTGTCTGGGACAG-TGGCATTGATATGTGATTGCATG
1 TAAGACCAC-GTCTGGGAC-GTTGGCATTGATATGTGAATACGTG
67370225 TAAGACCACGTCTGGGACGTTGGCATTG
1 TAAGACCACGTCTGGGACGTTGGCATTG
67370253 TACGATATAT
Statistics
Matches: 89, Mismatches: 15, Indels: 16
0.74 0.12 0.13
Matches are distributed among these distances:
41 25 0.28
42 13 0.15
43 50 0.56
44 1 0.01
ACGTcount: A:0.23, C:0.16, G:0.30, T:0.31
Consensus pattern (43 bp):
TAAGACCACGTCTGGGACGTTGGCATTGATATGTGAATACGTG
Found at i:67372983 original size:49 final size:50
Alignment explanation
Indices: 67372910--67373056 Score: 197
Period size: 50 Copynumber: 3.0 Consensus size: 50
67372900 GTAGCCGAAG
* * *
67372910 CTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC-AA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAA
* * *
67372959 TTATCTGGTACACGTAGTAGCCTGCACTTAGTACCACACACGTGACCTAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAA
* * * *
67373009 CCATCTGATACACGTAGTATCCTGCACTTAGTACTACACACGTGACCT
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCT
67373057 CACAATAGCT
Statistics
Matches: 86, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
49 41 0.48
50 45 0.52
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (50 bp):
CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAA
Found at i:67375813 original size:15 final size:16
Alignment explanation
Indices: 67375789--67375820 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
67375779 AACAGAGAAG
67375789 CCAAGAATAAAGAAAT
1 CCAAGAATAAAGAAAT
67375805 CCAAG-ATAAAGAAAT
1 CCAAGAATAAAGAAAT
67375820 C
1 C
67375821 TATGATACGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.59, C:0.16, G:0.12, T:0.12
Consensus pattern (16 bp):
CCAAGAATAAAGAAAT
Found at i:67378686 original size:50 final size:50
Alignment explanation
Indices: 67378573--67378705 Score: 169
Period size: 50 Copynumber: 2.7 Consensus size: 50
67378563 CTGGTACGCA
* * * ** **
67378573 TAGTAGCCTGCACTTAATACTACACATGCGACC-AATTATCTGGTACAAG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTAATACAAG
* *
67378622 TAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTAATACAAG
*
67378672 TAGTAGCCTGCACTTAGTACTATACACGTGACCT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCT
67378706 CACAATAGCT
Statistics
Matches: 72, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
49 29 0.40
50 43 0.60
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTAATACAAG
Found at i:67379386 original size:30 final size:30
Alignment explanation
Indices: 67379352--67379411 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
67379342 CTTTAATACG
67379352 AACTTTGGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* * *
67379382 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
67379412 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:67384570 original size:33 final size:32
Alignment explanation
Indices: 67384521--67384584 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
67384511 CTCGCTGCAA
* *
67384521 TCTGGTGGCTTCGCCACATATATATATATCTGT
1 TCTGGTGGCCTAGCCACA-ATATATATATCTGT
* *
67384554 TCTGGTGGCCTAGCCACAATATTTGTATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
67384585 GTGACTTCGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.38
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:67389492 original size:40 final size:39
Alignment explanation
Indices: 67389423--67389652 Score: 295
Period size: 40 Copynumber: 5.8 Consensus size: 39
67389413 GGATATAACC
* * **
67389423 ACTCGCACAAGGCCGTCGGGGGTTAGCCCGGATATAGCT-
1 ACTCGCACAATGCCTTCGGGACTTAGCCCGGATATAG-TA
* *
67389462 ACTCGCTCACATGCCTTCGGGACTTAGCCCGGTTATAGTA
1 ACTCGCACA-ATGCCTTCGGGACTTAGCCCGGATATAGTA
67389502 ACTCGCACAATTGCCTTCGGGACTTAGCCC-GATTATAGTA
1 ACTCGCACAA-TGCCTTCGGGACTTAGCCCGGA-TATAGTA
* * *
67389542 ACTCGCACAATTGCCTTCGGGACTTGGCCTGGTTATAGTA
1 ACTCGCACAA-TGCCTTCGGGACTTAGCCCGGATATAGTA
67389582 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATATAGTA
67389622 ACTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGG
67389653 TTATCAATCT
Statistics
Matches: 171, Mismatches: 14, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
39 21 0.12
40 147 0.86
41 3 0.02
ACGTcount: A:0.22, C:0.29, G:0.25, T:0.24
Consensus pattern (39 bp):
ACTCGCACAATGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:67395338 original size:40 final size:40
Alignment explanation
Indices: 67395283--67395506 Score: 243
Period size: 40 Copynumber: 5.5 Consensus size: 40
67395273 TATTCGGATG
* *
67395283 ATATCCGGGCTAAGTCCCGAGGGAATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
67395323 ATATCCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * * *
67395366 ATACCCGGGCTAAGTTCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* ** * *
67395406 ATATCCGGGCTAAGTCCCGAGGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* ** *
67395446 ATATCCGGGCTAAGACCCGAAGGCATTTGTGTGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
67395486 ATATCC-GGCTAAATCGCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
67395507 ATACTTGGGT
Statistics
Matches: 155, Mismatches: 26, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
39 12 0.08
40 107 0.69
41 1 0.01
43 35 0.23
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:67395431 original size:83 final size:79
Alignment explanation
Indices: 67395287--67395506 Score: 239
Period size: 83 Copynumber: 2.7 Consensus size: 79
67395277 CGGATGATAT
* * * * **
67395287 CCGGGCTAAGTCCCGAGGGAATTTGTGCAAGTTACTATATCCAGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCC-GGCTAAGTCCCGAAGGCATTCA
67395352 TGCGAGTAGTTG-CTATAC
65 TGC---TAG-TGACTATAC
* *
67395370 CCGGGCTAAGTTCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAGGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCC-GGCTAAGTCCCGAAGGCATTCA
*
67395435 TGCTAGTGACTATAT
65 TGCTAGTGACTATAC
* * *
67395450 CCGGGCTAAGACCCGAAGGCATTTGTG-TGAGTTG-CTATATCCGGCTAAATCGCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AG-TGACTATATCCGGCTAAGTCCCGAAG
67395507 ATACTTGGGT
Statistics
Matches: 119, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
79 15 0.13
80 43 0.36
81 2 0.02
83 59 0.50
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGCTAAGTCCCGAAGGCATTCAT
GCTAGTGACTATAC
Done.