Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 206 of 356
Found at i:67410187 original size:28 final size:29
Alignment explanation
Indices: 67410151--67410237 Score: 108
Period size: 28 Copynumber: 3.1 Consensus size: 29
67410141 CACATACCTA
*
67410151 TATATGGCCCATCAGGCCC-ATTCACATT
1 TATATGGCCCATCAGGCCCAAATCACATT
* *
67410179 TATGTGGCCCATTAGGCCCAAATCACATT
1 TATATGGCCCATCAGGCCCAAATCACATT
*
67410208 CATATGG-CCA-CTAGGCCCAAATCACATT
1 TATATGGCCCATC-AGGCCCAAATCACATT
67410236 TA
1 TA
67410238 CAATCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
28 37 0.74
29 13 0.26
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.26
Consensus pattern (29 bp):
TATATGGCCCATCAGGCCCAAATCACATT
Found at i:67413238 original size:21 final size:21
Alignment explanation
Indices: 67413213--67413255 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
67413203 CCTTCAACCT
67413213 TAGTCCGACAATGGATACGGG
1 TAGTCCGACAATGGATACGGG
*
67413234 TAGTCCGACAATGGATATGGG
1 TAGTCCGACAATGGATACGGG
67413255 T
1 T
67413256 TAGGGGTGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.28, C:0.16, G:0.33, T:0.23
Consensus pattern (21 bp):
TAGTCCGACAATGGATACGGG
Found at i:67417567 original size:49 final size:49
Alignment explanation
Indices: 67417495--67417669 Score: 235
Period size: 49 Copynumber: 3.5 Consensus size: 49
67417485 CTGGTATGCA
* *
67417495 TAGTAGCCTACACTTAGTACTACACATGCAACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCAGGTACACG
* * *
67417544 TAGTAGCCTGCACTTAGTACTACACACGTG-ATCGAAGTTATCAGGTACACA
1 TAGTAGCCTGCACTTAGTACTACACA--TGCAACCAA-TTATCAGGTACACG
* ** *
67417595 TAGTAGCCTGCACTTAGTACTACACAAGCGGCCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCAGGTACACG
67417644 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
67417670 CGTGACCTCA
Statistics
Matches: 111, Mismatches: 11, Indels: 8
0.85 0.08 0.06
Matches are distributed among these distances:
49 64 0.58
50 7 0.06
51 40 0.36
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCAGGTACACG
Found at i:67417630 original size:100 final size:100
Alignment explanation
Indices: 67417493--67417674 Score: 319
Period size: 100 Copynumber: 1.8 Consensus size: 100
67417483 ATCTGGTATG
*
67417493 CATAGTAGCCTACACTTAGTACTACACATGCAACCAATTATCCGGTACACGTAGTAGCCTGCACT
1 CATAGTAGCCTACACTTAGTACTACACAAGCAACCAATTATCCGGTACACGTAGTAGCCTGCACT
67417558 TAGTACTACACACGTGATCGAAGTTATCAGGTACA
66 TAGTACTACACACGTGATCGAAGTTATCAGGTACA
* ** *
67417593 CATAGTAGCCTGCACTTAGTACTACACAAGCGGCCAATTATCTGGTACACGTAGTAGCCTGCACT
1 CATAGTAGCCTACACTTAGTACTACACAAGCAACCAATTATCCGGTACACGTAGTAGCCTGCACT
67417658 TAGTACTACACACGTGA
66 TAGTACTACACACGTGA
67417675 CCTCACAATA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 77 1.00
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (100 bp):
CATAGTAGCCTACACTTAGTACTACACAAGCAACCAATTATCCGGTACACGTAGTAGCCTGCACT
TAGTACTACACACGTGATCGAAGTTATCAGGTACA
Found at i:67439227 original size:24 final size:24
Alignment explanation
Indices: 67439175--67439227 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
67439165 GATGATGAAT
*
67439175 TTGAGATTTTTCATTGTTGGTACC
1 TTGATATTTTTCATTGTTGGTACC
67439199 TTGATATTTTTCATTGTTGGTACC
1 TTGATATTTTTCATTGTTGGTACC
67439223 TTGAT
1 TTGAT
67439228 GACTTTTGTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.17, C:0.11, G:0.19, T:0.53
Consensus pattern (24 bp):
TTGATATTTTTCATTGTTGGTACC
Found at i:67439926 original size:44 final size:43
Alignment explanation
Indices: 67439867--67440033 Score: 167
Period size: 43 Copynumber: 3.9 Consensus size: 43
67439857 TAGGATTCCA
* *
67439867 ATATGTGATTTCGTGTAAGACCACGTCTGGGACATTGGCATCG
1 ATATATGATTTCGTGTAAGACCACATCTGGGACATTGGCATCG
* * *
67439910 ATTTATGATTTACGTGTAAGACCATATCTAGGACATTGGCATCG
1 ATATATGATTT-CGTGTAAGACCACATCTGGGACATTGGCATCG
* * * * * *
67439954 -TATATGAGTTCGGGTATGACC-CTGTCTGGGACAGTGGCATCA
1 ATATATGATTTCGTGTAAGACCAC-ATCTGGGACATTGGCATCG
* * * *
67439996 ATATGTGATTACATGTAAGACCACATCTGGGACGTTGG
1 ATATATGATTTCGTGTAAGACCACATCTGGGACATTGG
67440034 TGTTGTATGA
Statistics
Matches: 97, Mismatches: 23, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
42 24 0.25
43 43 0.44
44 30 0.31
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (43 bp):
ATATATGATTTCGTGTAAGACCACATCTGGGACATTGGCATCG
Found at i:67441019 original size:2 final size:2
Alignment explanation
Indices: 67441014--67441080 Score: 80
Period size: 2 Copynumber: 33.5 Consensus size: 2
67441004 TTTATATATA
* * * * *
67441014 TG TG TG TG TG TG TA TG TG TG TG TG TG TG TG GG GG GG TG GG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
*
67441056 GG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG T
67441081 TATTGTATGT
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 57 1.00
ACGTcount: A:0.01, C:0.00, G:0.55, T:0.43
Consensus pattern (2 bp):
TG
Found at i:67451006 original size:72 final size:72
Alignment explanation
Indices: 67450889--67451033 Score: 290
Period size: 72 Copynumber: 2.0 Consensus size: 72
67450879 GGTGGCAACG
67450889 CCAAACGATAGGCTAACGGTCCAATTCTTTCGGTAATCTCGTACGGTTCGATAAATCGTGGACTC
1 CCAAACGATAGGCTAACGGTCCAATTCTTTCGGTAATCTCGTACGGTTCGATAAATCGTGGACTC
67450954 AGTTTAC
66 AGTTTAC
67450961 CCAAACGATAGGCTAACGGTCCAATTCTTTCGGTAATCTCGTACGGTTCGATAAATCGTGGACTC
1 CCAAACGATAGGCTAACGGTCCAATTCTTTCGGTAATCTCGTACGGTTCGATAAATCGTGGACTC
67451026 AGTTTAC
66 AGTTTAC
67451033 C
1 C
67451034 TTTTCGACCA
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 73 1.00
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (72 bp):
CCAAACGATAGGCTAACGGTCCAATTCTTTCGGTAATCTCGTACGGTTCGATAAATCGTGGACTC
AGTTTAC
Found at i:67467326 original size:79 final size:79
Alignment explanation
Indices: 67467195--67467405 Score: 253
Period size: 79 Copynumber: 2.7 Consensus size: 79
67467185 GCAAGAAGAG
* ** * ** ** * *
67467195 AGCTTGCGAACTGGGATGGAGCTGCGAACTAATGAAGTGTGAACAGTCTCCAAAGGTTGCATGTG
1 AGCTTGCGAACTGAGATGGAGCTGCGAACTGGTGAAATGCAAATGGTCTCCAAAGGCTGCATGCG
*
67467260 AGGTACAAACAAAA
66 AGCTACAAACAAAA
* * *
67467274 AGCTTG-TAAGCTGAGATGGAGCTGCGAACTGGTGCAATGCAAATGGTCTCCAAGGGCTGCATGC
1 AGCTTGCGAA-CTGAGATGGAGCTGCGAACTGGTGAAATGCAAATGGTCTCCAAAGGCTGCATGC
*
67467338 GAGCTACAAACAAAG
65 GAGCTACAAACAAAA
* *
67467353 AGCTTGCGAACTGAGATGGAGCTGCGAACTGGTGAAATGCAAGTTGTCTCCAA
1 AGCTTGCGAACTGAGATGGAGCTGCGAACTGGTGAAATGCAAATGGTCTCCAA
67467406 GCACTGCATA
Statistics
Matches: 111, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
78 2 0.02
79 107 0.96
80 2 0.02
ACGTcount: A:0.31, C:0.18, G:0.30, T:0.20
Consensus pattern (79 bp):
AGCTTGCGAACTGAGATGGAGCTGCGAACTGGTGAAATGCAAATGGTCTCCAAAGGCTGCATGCG
AGCTACAAACAAAA
Found at i:67467428 original size:79 final size:79
Alignment explanation
Indices: 67467263--67467421 Score: 221
Period size: 79 Copynumber: 2.0 Consensus size: 79
67467253 GCATGTGAGG
* * *
67467263 TACAAACAAAAAGCTTGTAAGCTGAGATGGAGCTGCGAACTGGTGCAATGCAAATGGTCTCCAAG
1 TACAAACAAAGAGCTTGGAAGCTGAGATGGAGCTGCGAACTGGTGAAATGCAAATGGTCTCCAAG
** * *
67467328 GGCTGCATGCGAGC
66 CACTGCATACAAGC
* *
67467342 TACAAACAAAGAGCTTGCGAA-CTGAGATGGAGCTGCGAACTGGTGAAATGCAAGTTGTCTCCAA
1 TACAAACAAAGAGCTTG-GAAGCTGAGATGGAGCTGCGAACTGGTGAAATGCAAATGGTCTCCAA
67467406 GCACTGCATACAAGC
65 GCACTGCATACAAGC
67467421 T
1 T
67467422 GTAAACAGAG
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
79 68 0.97
80 2 0.03
ACGTcount: A:0.33, C:0.21, G:0.27, T:0.19
Consensus pattern (79 bp):
TACAAACAAAGAGCTTGGAAGCTGAGATGGAGCTGCGAACTGGTGAAATGCAAATGGTCTCCAAG
CACTGCATACAAGC
Found at i:67471792 original size:16 final size:15
Alignment explanation
Indices: 67471771--67471814 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 15
67471761 ATACATATAA
*
67471771 TTAGTTAAATTTAAAC
1 TTAGTT-AATTAAAAC
67471787 TTAGTTAATTAAAAC
1 TTAGTTAATTAAAAC
*
67471802 TTTAATTAATTAA
1 -TTAGTTAATTAA
67471815 CTAATTGTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 8 0.32
16 17 0.68
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.45
Consensus pattern (15 bp):
TTAGTTAATTAAAAC
Found at i:67472127 original size:9 final size:9
Alignment explanation
Indices: 67472103--67472218 Score: 66
Period size: 10 Copynumber: 12.6 Consensus size: 9
67472093 AATTTTAAAT
67472103 ATTTTAATTA
1 ATTTT-ATTA
67472113 AGTTTTATTA
1 A-TTTTATTA
67472123 ATTTTA-T-
1 ATTTTATTA
67472130 ATTTT-TTA
1 ATTTTATTA
*
67472138 TAATTTATTA
1 -ATTTTATTA
*
67472148 GATTTAATTA
1 -ATTTTATTA
67472158 GATTTT-TTA
1 -ATTTTATTA
67472167 TATTTTA-TA
1 -ATTTTATTA
67472176 ATATTTA-TA
1 AT-TTTATTA
67472185 AGCTTTTA-TA
1 A--TTTTATTA
*
67472195 ATTTTAATA
1 ATTTTATTA
67472204 AGTTTTATTA
1 A-TTTTATTA
67472214 ATTTT
1 ATTTT
67472219 TATATTTTTA
Statistics
Matches: 88, Mismatches: 7, Indels: 23
0.75 0.06 0.19
Matches are distributed among these distances:
7 6 0.07
8 8 0.09
9 33 0.38
10 36 0.41
11 5 0.06
ACGTcount: A:0.34, C:0.01, G:0.04, T:0.61
Consensus pattern (9 bp):
ATTTTATTA
Found at i:67472179 original size:10 final size:9
Alignment explanation
Indices: 67472161--67472236 Score: 68
Period size: 9 Copynumber: 8.6 Consensus size: 9
67472151 TTAATTAGAT
67472161 TTTTTAT-A
1 TTTTTATAA
67472169 -TTTTATAA
1 TTTTTATAA
*
67472177 TATTTATAA
1 TTTTTATAA
*
67472186 GCTTTTATAA
1 -TTTTTATAA
*
67472196 TTTTAATAA
1 TTTTTATAA
*
67472205 GTTTTATTAA
1 TTTTTA-TAA
67472215 TTTTTAT-A
1 TTTTTATAA
*
67472223 TTTTTAAAA
1 TTTTTATAA
67472232 TTTTT
1 TTTTT
67472237 TATGCTTTTT
Statistics
Matches: 54, Mismatches: 9, Indels: 9
0.75 0.12 0.12
Matches are distributed among these distances:
7 6 0.11
8 8 0.15
9 25 0.46
10 15 0.28
ACGTcount: A:0.33, C:0.01, G:0.03, T:0.63
Consensus pattern (9 bp):
TTTTTATAA
Found at i:67472191 original size:19 final size:17
Alignment explanation
Indices: 67472111--67472218 Score: 76
Period size: 19 Copynumber: 5.9 Consensus size: 17
67472101 ATATTTTAAT
67472111 TAAGTTTTATTAATTTTA
1 TAAGTTTTA-TAATTTTA
**
67472129 TATTTTTTATAA-TTTA
1 TAAGTTTTATAATTTTA
* * *
67472145 TTAGATTTAATTAGATTTTT
1 TAAG-TTTTA-TA-ATTTTA
67472165 TATA-TTTTATAATATTTA
1 TA-AGTTTTATAAT-TTTA
67472183 TAAGCTTTTATAATTTTAA
1 TAAG-TTTTATAATTTT-A
67472202 TAAGTTTTATTAATTTT
1 TAAGTTTTA-TAATTTT
67472219 TATATTTTTA
Statistics
Matches: 70, Mismatches: 10, Indels: 19
0.71 0.10 0.19
Matches are distributed among these distances:
16 5 0.07
17 10 0.14
18 24 0.34
19 26 0.37
20 4 0.06
21 1 0.01
ACGTcount: A:0.33, C:0.01, G:0.05, T:0.61
Consensus pattern (17 bp):
TAAGTTTTATAATTTTA
Found at i:67472191 original size:28 final size:28
Alignment explanation
Indices: 67472131--67472263 Score: 71
Period size: 28 Copynumber: 4.8 Consensus size: 28
67472121 TAATTTTATA
* * * * *
67472131 TTTTTTATAATTTATTAGATTTAATTAGA
1 TTTTTTATATTTTATAATATTT-ATAAGC
67472160 TTTTTTATATTTTATAATATTTATAAGC
1 TTTTTTATATTTTATAATATTTATAAGC
*
67472188 TTTTATA-ATTTTAATAAGT-TTTATTAA--
1 TTTTTTATATTTT-ATAA-TATTTA-TAAGC
* * *
67472215 -TTTTTATATTTT-TAAAATTTTTTATGC
1 TTTTTTATATTTTATAATA-TTTATAAGC
* * *
67472242 TTTTTTCTATTTTTTATTATTT
1 TTTTTTATATTTTATAATATTT
67472264 TTATGAAAAA
Statistics
Matches: 81, Mismatches: 13, Indels: 21
0.70 0.11 0.18
Matches are distributed among these distances:
25 5 0.06
26 8 0.10
27 10 0.12
28 32 0.40
29 26 0.32
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.65
Consensus pattern (28 bp):
TTTTTTATATTTTATAATATTTATAAGC
Found at i:67472227 original size:9 final size:9
Alignment explanation
Indices: 67472124--67472265 Score: 63
Period size: 9 Copynumber: 15.3 Consensus size: 9
67472114 GTTTTATTAA
67472124 TTTTATATT
1 TTTTATATT
67472133 TTTTATAATT
1 TTTTAT-ATT
* *
67472143 TATTAGATT
1 TTTTATATT
* *
67472152 TAATTAGATT
1 T-TTTATATT
67472162 TTTTATA--
1 TTTTATATT
*
67472169 TTTTATAAT
1 TTTTATATT
* **
67472178 ATTTATAAGC
1 TTTTAT-ATT
*
67472188 TTTTATAAT
1 TTTTATATT
* **
67472197 TTTAATAAG
1 TTTTATATT
*
67472206 TTTTATTAAT
1 TTTTA-TATT
67472216 TTTTATATT
1 TTTTATATT
* *
67472225 TTTAAAATT
1 TTTTATATT
*
67472234 TTTTATGCTT
1 TTTTAT-ATT
*
67472244 TTTTCTATT
1 TTTTATATT
67472253 TTTTATTATT
1 TTTTA-TATT
67472263 TTT
1 TTT
67472266 ATGAAAAAAA
Statistics
Matches: 102, Mismatches: 23, Indels: 15
0.73 0.16 0.11
Matches are distributed among these distances:
7 7 0.07
9 51 0.50
10 44 0.43
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.65
Consensus pattern (9 bp):
TTTTATATT
Found at i:67472661 original size:22 final size:23
Alignment explanation
Indices: 67472631--67472676 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
67472621 TAGTAAATAA
*
67472631 GAATAA-TTTTATTTTTTATTTG
1 GAATAATTTTTATTTTTGATTTG
*
67472653 GAATTATTTTTATTTTTGATTTG
1 GAATAATTTTTATTTTTGATTTG
67472676 G
1 G
67472677 TTTTTTATGC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 5 0.24
23 16 0.76
ACGTcount: A:0.24, C:0.00, G:0.13, T:0.63
Consensus pattern (23 bp):
GAATAATTTTTATTTTTGATTTG
Found at i:67475697 original size:122 final size:122
Alignment explanation
Indices: 67475534--67475777 Score: 434
Period size: 122 Copynumber: 2.0 Consensus size: 122
67475524 GAGGATATTA
67475534 ATACATTGCAGTAAGGAAACACATACATTAACCAAAGCATCTTACATGTACATCAGTAAACAAGC
1 ATACATTGCAGTAAGGAAACACATACATTAACCAAAGCATCTTACATGTACATCAGTAAACAAGC
* *
67475599 AGCTAAGATACATGCCTGGTAATGAGCAATTCTATCAAAGACACTAATAGTGATAAG
66 AGCTAAGATACATGCCTGATAATGAGCAATTCTAGCAAAGACACTAATAGTGATAAG
* * *
67475656 ATACATTGCAGTAAGGAAACGCATACATTAACTATAGCATCTTACATGTACATCAGTAAACAAGC
1 ATACATTGCAGTAAGGAAACACATACATTAACCAAAGCATCTTACATGTACATCAGTAAACAAGC
*
67475721 AGCTAAGATACATGCCTGATAATGAGCATTTCTAGCAAAGACACTAATAGTGATAAG
66 AGCTAAGATACATGCCTGATAATGAGCAATTCTAGCAAAGACACTAATAGTGATAAG
67475778 TGCCAGAGAT
Statistics
Matches: 116, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
122 116 1.00
ACGTcount: A:0.42, C:0.18, G:0.16, T:0.24
Consensus pattern (122 bp):
ATACATTGCAGTAAGGAAACACATACATTAACCAAAGCATCTTACATGTACATCAGTAAACAAGC
AGCTAAGATACATGCCTGATAATGAGCAATTCTAGCAAAGACACTAATAGTGATAAG
Found at i:67478848 original size:131 final size:129
Alignment explanation
Indices: 67478610--67478942 Score: 436
Period size: 131 Copynumber: 2.6 Consensus size: 129
67478600 GAAAAACCGA
** * * * * * * *
67478610 AACCCAGCACAGTAGGGCACGATTCCTCTAATTTCTAGACATTGTACATTGCCTTGTTTT--AGA
1 AACCCAGCATGGTAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTGCCTTGTTTTAAAGA
** * * * **
67478673 ATTTAGAAAACATGAGTGAAATTCTAAAGGGACATTTGATTATTTTGGACAAACGGGAAATTGC
66 ATTTTTAAAACATGAGTGAAATTCTAAAGGAACATTCGATTATTTTGAACAAAAAGGAAATTGC
*
67478737 AACCCAGCATGGTAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTTCCTTCGTTTTAAAG
1 AACCCAGCATGGTAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTGCCTT-GTTTTAAAG
*
67478802 AATTTTTAAAGACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAAAAGGAAATTG
65 AATTTTTAAA-ACATGAGTGAAATTCTAAAGGAACATTCGATTATTTTGAACAAAAAGGAAATTG
67478867 C
129 C
* * *
67478868 AACCCAGCATGATAGGGCACGATTCCCCGAATTGCCAAACATCGAACATCGCATTTGTTTTAAAG
1 AACCCAGCATGGTAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTGC-CTTGTTTTAAAG
67478933 AATTTTTAAA
65 AATTTTTAAA
67478943 TGGATAATTA
Statistics
Matches: 179, Mismatches: 22, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
127 45 0.25
128 5 0.03
130 10 0.06
131 117 0.65
132 2 0.01
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (129 bp):
AACCCAGCATGGTAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTGCCTTGTTTTAAAGA
ATTTTTAAAACATGAGTGAAATTCTAAAGGAACATTCGATTATTTTGAACAAAAAGGAAATTGC
Found at i:67493439 original size:26 final size:26
Alignment explanation
Indices: 67493400--67493481 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
67493390 TGAAATTCCA
67493400 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
67493426 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
67493452 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
67493478 ATCA
1 ATCA
67493482 ATTTGTACCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.35, C:0.24, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:67507527 original size:47 final size:47
Alignment explanation
Indices: 67507456--67508001 Score: 932
Period size: 47 Copynumber: 11.6 Consensus size: 47
67507446 CCCTTCGGGA
* * * * * *
67507456 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67507503 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67507550 CTTATCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67507597 CTTATCACATATATACACTTTCACATTCATCGCATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67507644 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67507691 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67507738 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67507785 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67507832 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67507879 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCA-GC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATT-AGGC
*
67507928 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67507975 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
67508002 TATTCAAATA
Statistics
Matches: 476, Mismatches: 19, Indels: 8
0.95 0.04 0.02
Matches are distributed among these distances:
46 1 0.00
47 430 0.90
49 44 0.09
50 1 0.00
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:67511930 original size:25 final size:25
Alignment explanation
Indices: 67511895--67511944 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
67511885 GGAATTCGCA
67511895 CACACACAGTGC-CTCTAATCATTCG
1 CACACACAGTGCTCT-TAATCATTCG
* *
67511920 CACACATAGTGCTCTTATTCATTCG
1 CACACACAGTGCTCTTAATCATTCG
67511945 TTATTACACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 20 0.91
26 2 0.09
ACGTcount: A:0.26, C:0.32, G:0.12, T:0.30
Consensus pattern (25 bp):
CACACACAGTGCTCTTAATCATTCG
Found at i:67512152 original size:40 final size:40
Alignment explanation
Indices: 67512120--67512311 Score: 285
Period size: 40 Copynumber: 4.8 Consensus size: 40
67512110 CCAGCATGAT
* * * *
67512120 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * * *
67512160 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
67512200 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
67512240 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
67512280 TGCTCTTCGGGACTTAGCCCGGATACATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
67512312 CTCAATTCTC
Statistics
Matches: 136, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 136 1.00
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:67513795 original size:47 final size:47
Alignment explanation
Indices: 67513724--67513943 Score: 341
Period size: 47 Copynumber: 4.7 Consensus size: 47
67513714 CCCTTCGGGA
* * * * * *
67513724 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67513771 CCTATCACATATATACACTTTCACATTCATCACATCGGTCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67513818 CTTATCACATATATACACTTTCACATTCATCGCATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67513865 CTTATCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67513912 CTTATCACATATATACACTTTCACATTCATCA
1 CTTATCACATATATACACTTTCACATTCATCA
67513944 TGTAACACCC
Statistics
Matches: 159, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 159 1.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:67515328 original size:40 final size:40
Alignment explanation
Indices: 67515284--67515428 Score: 170
Period size: 40 Copynumber: 3.6 Consensus size: 40
67515274 GCTCCTCGTT
*
67515284 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
67515324 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
67515363 CAAATGCCATC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
67515404 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
67515429 CAACATTCAA
Statistics
Matches: 88, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.36
40 43 0.49
41 11 0.12
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:67517094 original size:47 final size:47
Alignment explanation
Indices: 67517030--67517313 Score: 498
Period size: 47 Copynumber: 6.0 Consensus size: 47
67517020 GGCTGTCACA
*
67517030 CATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATT
1 CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
67517077 CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
1 CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
*
67517124 CATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATT
1 CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
67517171 CATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATT
1 CATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATT
*
67517220 CATCACATTGGCCATTCA-GCCTTATCACATATATACACTTTCACATT
1 CATCACATCGGCCATT-AGGCCTTATCACATATATACACTTTCACATT
*
67517267 CATCACATCGGCCATTAGGTCTTATCACATATATACACTTTCACATT
1 CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
67517314 TATTCAAATA
Statistics
Matches: 227, Mismatches: 6, Indels: 8
0.94 0.02 0.03
Matches are distributed among these distances:
46 1 0.00
47 181 0.80
49 44 0.19
50 1 0.00
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
Found at i:67517291 original size:143 final size:141
Alignment explanation
Indices: 67517030--67517313 Score: 498
Period size: 143 Copynumber: 2.0 Consensus size: 141
67517020 GGCTGTCACA
*
67517030 CATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
1 CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
*
67517095 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
66 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
67517160 ACTTTCACATT
131 ACTTTCACATT
*
67517171 CATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATT
1 CATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATT
*
67517236 CA-GCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGTCTTATCACATATA
64 -AGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
67517300 TACACTTTCACATT
128 TACACTTTCACATT
67517314 TATTCAAATA
Statistics
Matches: 136, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
141 27 0.20
143 108 0.79
144 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (141 bp):
CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
GCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATT
Found at i:67521117 original size:24 final size:24
Alignment explanation
Indices: 67521058--67521125 Score: 84
Period size: 24 Copynumber: 2.8 Consensus size: 24
67521048 TACCGATATA
*
67521058 TCAGCTCGTAAGAGCTTACTAATC
1 TCAGCTCGTTAGAGCTTACTAATC
* *
67521082 TCAGTTCGTTAGAGCTTACT-ATT
1 TCAGCTCGTTAGAGCTTACTAATC
*
67521105 TCCAGCTCATTAGAGCTTACT
1 T-CAGCTCGTTAGAGCTTACT
67521126 GTTTATCAGC
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
23 3 0.08
24 35 0.92
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.35
Consensus pattern (24 bp):
TCAGCTCGTTAGAGCTTACTAATC
Found at i:67525903 original size:17 final size:18
Alignment explanation
Indices: 67525865--67525903 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
67525855 CTTTCATTAA
67525865 GTTTTTAAGATTCAACTT
1 GTTTTTAAGATTCAACTT
*
67525883 -TTTTTAGGATTCAA-TT
1 GTTTTTAAGATTCAACTT
67525899 GTTTT
1 GTTTT
67525904 CCTTTTAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
16 2 0.11
17 17 0.89
ACGTcount: A:0.23, C:0.08, G:0.13, T:0.56
Consensus pattern (18 bp):
GTTTTTAAGATTCAACTT
Found at i:67537951 original size:20 final size:20
Alignment explanation
Indices: 67537926--67537971 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
67537916 GTTCAGCTTG
*
67537926 CACATGGGCGTGTAGACCAC
1 CACATGGGCATGTAGACCAC
*
67537946 CACATGGGCATGTAGACCTC
1 CACATGGGCATGTAGACCAC
67537966 CACATG
1 CACATG
67537972 ATCTAGGCAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.17
Consensus pattern (20 bp):
CACATGGGCATGTAGACCAC
Found at i:67540269 original size:45 final size:45
Alignment explanation
Indices: 67540182--67540308 Score: 150
Period size: 45 Copynumber: 2.8 Consensus size: 45
67540172 TTATTCCTGA
* *
67540182 CATGATGCCATAGAGTCTTTCAACTATGGTCTTACAT-GTTTGAAT
1 CATGATGCCATAGAGTCTTTCAGCTATGGTCTTAC-TCATTTGAAT
* * *
67540227 CGTGATGCCATAGCGTCTTTCAGCTATGGTCTTACTCATTTGATT
1 CATGATGCCATAGAGTCTTTCAGCTATGGTCTTACTCATTTGAAT
* * *
67540272 CACGATGCAATA-ATGTCTTTTAGCTATGGTCTTACTC
1 CATGATGCCATAGA-GTCTTTCAGCTATGGTCTTACTC
67540309 GTTTTTCAAC
Statistics
Matches: 70, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
44 1 0.01
45 69 0.99
ACGTcount: A:0.23, C:0.20, G:0.18, T:0.39
Consensus pattern (45 bp):
CATGATGCCATAGAGTCTTTCAGCTATGGTCTTACTCATTTGAAT
Found at i:67546096 original size:42 final size:43
Alignment explanation
Indices: 67545986--67546144 Score: 178
Period size: 43 Copynumber: 3.7 Consensus size: 43
67545976 TAAGCTCTTA
* * *
67545986 CAATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAATAT
1 CAATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATAT
* * * *
67546029 CAATGCCACTGTCCCAGATAGGGTCTTACACGAAATCATATA-
1 CAATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATAT
* *
67546071 CAATGCCAATGTCCTAGACATGGTCTTACACATAAATCACAA-AT
1 CAATGCCAATGTCCCAGACATGGTCTTACAC-GAAATCA-AATAT
* * *
67546115 CGATGCCAACGTCCCAGACTTGGTCTTACA
1 CAATGCCAATGTCCCAGACATGGTCTTACA
67546145 TGATAACACA
Statistics
Matches: 96, Mismatches: 17, Indels: 5
0.81 0.14 0.04
Matches are distributed among these distances:
42 27 0.28
43 42 0.44
44 27 0.28
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (43 bp):
CAATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATAT
Found at i:67552255 original size:48 final size:48
Alignment explanation
Indices: 67552184--67552578 Score: 664
Period size: 48 Copynumber: 8.2 Consensus size: 48
67552174 TGTACAAGAT
* * *
67552184 AAATATATATGAGATATGTATATGTGGCAAAGCCGAATGGCTACTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
67552232 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAAGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
67552280 AAATATGTATGAGAAATGTATATGTGGTAAAGTCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
67552328 AAATATGTATGAGAAATGTATATATGTGGTAAAACCGAATGGCTAATGTG
1 AAATATGTATGAGATATG--TATATGTGGTAAAGCCGAATGGCTAATGTG
* *
67552378 AGATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTACTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
67552426 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
67552474 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
67552522 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
67552570 AAATATGTA
1 AAATATGTA
67552579 GAAGATGTGT
Statistics
Matches: 329, Mismatches: 16, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
48 285 0.87
50 44 0.13
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
Found at i:67552594 original size:194 final size:193
Alignment explanation
Indices: 67552184--67552578 Score: 684
Period size: 194 Copynumber: 2.0 Consensus size: 193
67552174 TGTACAAGAT
*
67552184 AAATATATATGAGATATGTATATGTGGCAAAGCCGAATGGCTACTGTGAAATATATATGAGATAT
1 AAATATGTATGAGATATGTATATGTGGCAAAGCCGAATGGCTACTGTGAAATATATATGAGATAT
*
67552249 GTATATGTGGTAAAGCCGAATGGCTAAAGTGAAATATGTATGAGAAATGTATATGTGGTAAAGTC
66 GTATATGTGGTAAAGCCGAATGGCTAAAGTGAAATATGTATGAGAAATGTATATGTGGTAAAGCC
67552314 GAATGGCTAATGTGAAATATGTATGAGAAATGTATATATGTGGTAAAACCGAATGGCTAATGTG
131 GAATGGCTAATGTGAAATATGTATGAGAAATG-ATATATGTGGTAAAACCGAATGGCTAATGTG
* * *
67552378 AGATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTACTGTGAAATATGTATGAGATAT
1 AAATATGTATGAGATATGTATATGTGGCAAAGCCGAATGGCTACTGTGAAATATATATGAGATAT
* *
67552443 GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
66 GTATATGTGGTAAAGCCGAATGGCTAAAGTGAAATATGTATGAGAAATGTATATGTGGTAAAGCC
* * *
67552508 GAATGGCTAATGTGAAATATGTATGAGATATG-TATATGTGGTAAAGCCGAATGGCTAGTGTG
131 GAATGGCTAATGTGAAATATGTATGAGAAATGATATATGTGGTAAAACCGAATGGCTAATGTG
67552570 AAATATGTA
1 AAATATGTA
67552579 GAAGATGTGT
Statistics
Matches: 190, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
192 36 0.19
194 154 0.81
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (193 bp):
AAATATGTATGAGATATGTATATGTGGCAAAGCCGAATGGCTACTGTGAAATATATATGAGATAT
GTATATGTGGTAAAGCCGAATGGCTAAAGTGAAATATGTATGAGAAATGTATATGTGGTAAAGCC
GAATGGCTAATGTGAAATATGTATGAGAAATGATATATGTGGTAAAACCGAATGGCTAATGTG
Found at i:67554346 original size:40 final size:40
Alignment explanation
Indices: 67554008--67554336 Score: 595
Period size: 40 Copynumber: 8.2 Consensus size: 40
67553998 AGTTATATAA
67554008 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
*
67554048 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
*
67554088 CCGGGCTAAGTTCCAAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
*
67554128 CCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
67554168 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
*
67554208 CCGGGCTAAGTTCTGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
*
67554248 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
*
67554288 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
*
67554328 CCAGGCTAA
1 CCGGGCTAA
67554337 ACCTCGAAGA
Statistics
Matches: 277, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 277 1.00
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
Found at i:67554449 original size:29 final size:28
Alignment explanation
Indices: 67554368--67554467 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
67554358 GAGTTATGAG
* * *
67554368 GCACTGTGTGTGCAAGTTCTTTAACTGA
1 GCACTATGTGTGCGAGTTCTTTAATTGA
**
67554396 GCACTATGTGTGCGAGATT-GGTAATTGA
1 GCACTATGTGTGCGAG-TTCTTTAATTGA
*
67554424 GGCACTATGTGTGCGAGTTCTTTAATCGA
1 -GCACTATGTGTGCGAGTTCTTTAATTGA
*
67554453 GCGCTATGTGTGCGA
1 GCACTATGTGTGCGA
67554468 AATCAGTCAG
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
28 36 0.60
29 24 0.40
ACGTcount: A:0.21, C:0.16, G:0.30, T:0.33
Consensus pattern (28 bp):
GCACTATGTGTGCGAGTTCTTTAATTGA
Found at i:67556703 original size:48 final size:48
Alignment explanation
Indices: 67556632--67557320 Score: 1216
Period size: 48 Copynumber: 14.3 Consensus size: 48
67556622 TGTACAAGAT
* * *
67556632 AAATATATATGAGATATGTATATGTGGCAAAGCCGAATGGCTACTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
67556680 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAAGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
67556728 AAATATGTATGAGAAATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
67556776 AAATATGTATGAGAAATGTATATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATG--TATATGTGGTAAAGCCGAATGGCTAATGTG
* * *
67556826 AAATATGTATGAGAGATGTATATGTGGTAAAGCCGAGTGGCTACTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
67556874 AAATATGTATGAGATATGTATATGTGGTAAAGCCAAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
67556922 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
67556970 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
67557018 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTACTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
67557066 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
67557114 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
67557162 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTACTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
67557210 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGACTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
67557258 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
67557306 AAATATGTAGGAGAT
1 AAATATGTATGAGAT
67557321 GTGTGTAGAT
Statistics
Matches: 617, Mismatches: 22, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
48 570 0.92
50 47 0.08
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.30
Consensus pattern (48 bp):
AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
Found at i:67558975 original size:27 final size:27
Alignment explanation
Indices: 67558940--67559015 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
67558930 GGGCAAACAA
* *
67558940 TCATTTTACCCAACAGGGGTATGTCAG
1 TCATTTTACACAACAAGGGTATGTCAG
* * *
67558967 TCATTTTACACTACAAGGGTATTTCGG
1 TCATTTTACACAACAAGGGTATGTCAG
* *
67558994 TAATTTTACACTACAAGGGTAT
1 TCATTTTACACAACAAGGGTAT
67559016 TTTGATAATT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.34
Consensus pattern (27 bp):
TCATTTTACACAACAAGGGTATGTCAG
Found at i:67559376 original size:27 final size:27
Alignment explanation
Indices: 67558982--67559368 Score: 474
Period size: 27 Copynumber: 14.4 Consensus size: 27
67558972 TTACACTACA
* *
67558982 AGGGTATTTCGGTAATTTTAC-ACTACA
1 AGGGTATTTCGGTAATTTTACAAAT-CG
* * *
67559009 AGGGTATTTTGATAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
67559036 GGGGTGTTTCGTTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
*
67559063 AGGGTATTTCAGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
67559090 AGGGTATTTTGGTAATTTTACAAATAG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
67559117 AAGGTATTTTGGTAATTTTACAAATCA
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
67559144 AGGGTGTTTCAGTAATTTTAAAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
*
67559171 AGGGTGTTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
67559198 AGGGTGTTTCGGTAATTTCACAAATCA
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
67559225 AGGGTGTTTCGGTAATTTCACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATCG
*
67559252 AGGGTATTTTGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
*
67559279 AGGGTATTTCAGTAATTTTAC-AATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
67559305 AGGGTATTTTGGTAATTTTACAAAT-T
1 AGGGTATTTCGGTAATTTTACAAATCG
*
67559331 AGGGGTATTTCGATAATTTTACAAATCG
1 A-GGGTATTTCGGTAATTTTACAAATCG
67559359 AGGGTATTTC
1 AGGGTATTTC
67559369 AATAATTTCT
Statistics
Matches: 312, Mismatches: 44, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
26 25 0.08
27 284 0.91
28 3 0.01
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAATCG
Found at i:67564224 original size:25 final size:25
Alignment explanation
Indices: 67564196--67564244 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
67564186 ATATATATCA
67564196 TAAA-ATAGCACATAAAAGAAATAAT
1 TAAACATAGCACATAAAA-AAATAAT
**
67564221 TAAACATAGCTTATAAAAAAATAA
1 TAAACATAGCACATAAAAAAATAA
67564245 AACTATGCAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 10 0.48
26 11 0.52
ACGTcount: A:0.63, C:0.08, G:0.06, T:0.22
Consensus pattern (25 bp):
TAAACATAGCACATAAAAAAATAAT
Found at i:67564763 original size:22 final size:21
Alignment explanation
Indices: 67564733--67564779 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
67564723 TACAAATTAA
67564733 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
67564755 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
67564776 ATCT
1 ATCT
67564780 AAGATTGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:67564785 original size:19 final size:19
Alignment explanation
Indices: 67564750--67564828 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
67564740 AGATTACAAG
67564750 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
67564771 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
67564788 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
67564807 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
67564826 ATC
1 ATC
67564829 CTTAAAGATT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
20 1 0.02
21 8 0.14
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:67564805 original size:36 final size:38
Alignment explanation
Indices: 67564750--67564822 Score: 132
Period size: 36 Copynumber: 2.0 Consensus size: 38
67564740 AGATTACAAG
67564750 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
1 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
67564788 ATCATATC-T-AAGATTGCATATCATATCTAAGATTG
1 ATCATATCTTCAAGATTGCATATCATATCTAAGATTG
67564823 CATATCCTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
36 26 0.74
37 1 0.03
38 8 0.23
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (38 bp):
ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
Found at i:67564837 original size:36 final size:35
Alignment explanation
Indices: 67564751--67564838 Score: 117
Period size: 36 Copynumber: 2.4 Consensus size: 35
67564741 GATTACAAGA
67564751 TCATATCTTCAAGATTGCATATCATATCTAAGATTG
1 TCATATCTT-AAGATTGCATATCATATCTAAGATTG
67564787 TATCATATC-TAAGATTGCATATCATATCTAAGATTG
1 --TCATATCTTAAGATTGCATATCATATCTAAGATTG
67564823 -CATATCCTTAAAGATT
1 TCATAT-CTT-AAGATT
67564839 ATATTTCCAT
Statistics
Matches: 47, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
33 5 0.11
34 1 0.02
35 1 0.02
36 32 0.68
37 1 0.02
38 7 0.15
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (35 bp):
TCATATCTTAAGATTGCATATCATATCTAAGATTG
Found at i:67565581 original size:206 final size:206
Alignment explanation
Indices: 67565234--67566365 Score: 1844
Period size: 206 Copynumber: 5.5 Consensus size: 206
67565224 CTATTTTCTA
* * *
67565234 ACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGCGAAAACCAAATCAAC
1 ACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCAGC
* * * * *
67565299 TATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTGGATCTGCTTCAGTCTA
66 TATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTGCTTCAGTATA
* ** * * * *
67565364 ATCACCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCATCAAATATGGAGATGCCAAACTTCGA
131 AACATATGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGACGCCAAACTTCGA
67565429 TTTGTTCTCTG
196 TTTGTTCTCTG
*
67565440 ACAATACAGAGATGCTAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCAGC
1 ACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCAGC
* * *
67565505 TATGTCTTTGATTTGTTCCTTGTAAGCACAAGAATGCCAAATCATCTTGGATCTGCTTCAGTATA
66 TATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTGCTTCAGTATA
* * *
67565570 AACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGACGCTAAACTTCAA
131 AACATATGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGACGCCAAACTTCGA
67565635 TTTGTTCTCTG
196 TTTGTTCTCTG
*
67565646 ACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACATGAAAGCCAAATCAGC
1 ACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCAGC
* * *
67565711 TATGCCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTCGGATCTGCTTCAATATA
66 TATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTGCTTCAGTATA
** *
67565776 AACATATGAAGGCCAGATCTGCTATGTG-C--CTCT--GTCGAATATGGAGACGCCAAACTTTGA
131 AACATATGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGACGCCAAACTTCGA
*
67565836 TTTGTTTTCTG
196 TTTGTTCTCTG
67565847 ACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCAGC
1 ACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCAGC
67565912 TATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTGCTTCAGTATA
66 TATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTGCTTCAGTATA
* * *
67565977 AACATATGAAGGTCAGATCTGCTATGTGCCTGCTCTCTGTCGAATATGGAGACGCCAAACTTCGA
131 AACATATGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGACGCCAAACTTCGA
67566042 TTTGTTCTCTG
196 TTTGTTCTCTG
*
67566053 ATAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCAGC
1 ACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCAGC
67566118 TATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTGCTTCAGTATA
66 TATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTGCTTCAGTATA
* * *
67566183 AACATATGAAGGCTATATCTGCTATGTGTCTGCTCTCCATCGAATATGGAGACGCCAAACTTCGA
131 AACATATGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGACGCCAAACTTCGA
67566248 TTTGTTCTCTG
196 TTTGTTCTCTG
* * * * *
67566259 ACAATACAGAGATGCCAAATTATCTTAGATTTGCTTTATCATAAACA-GTGAAAGCCAAATCGGC
1 ACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCAGC
67566323 TATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATC
66 TATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATC
67566366 TTCTATCTTC
Statistics
Matches: 868, Mismatches: 53, Indels: 11
0.93 0.06 0.01
Matches are distributed among these distances:
201 187 0.22
202 1 0.00
203 4 0.00
204 4 0.00
205 60 0.07
206 612 0.71
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.30
Consensus pattern (206 bp):
ACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCAGC
TATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTGCTTCAGTATA
AACATATGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGACGCCAAACTTCGA
TTTGTTCTCTG
Found at i:67565997 original size:407 final size:408
Alignment explanation
Indices: 67565234--67566365 Score: 1809
Period size: 407 Copynumber: 2.8 Consensus size: 408
67565224 CTATTTTCTA
* * *
67565234 ACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGCGAAAACCAAATCAAC
1 ACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCAGC
* * * * *
67565299 TATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTGGATCTGCTTCAGTCTA
66 TATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTGCTTCAGTATA
* ** * * * *
67565364 ATCACCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCATCAAATATGGAGATGCCAAACTTCGA
131 AACATATGAAGGCTAGATCTGCTA--TG--TGCCCTCTATCGAATATGGAGACGCCAAACTTCGA
*
67565429 TTTGTTCTCTGACAATACAGAGATGCTAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAA
192 TTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAA
* * *
67565494 GCCAAATCAGCTATGTCTTTGATTTGTTCCTTGTAAGCACAAGAATGCCAAATCATCTTGGATCT
257 GCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCT
* * *
67565559 GCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGACG
322 GCTTCAGTATAAACATATGAAGGTCAGATCTGCTATGTGCCTGCTCTCCGTCGAATATGGAGACG
*
67565624 CTAAACTTCAATTTGTTCTCTG
387 CCAAACTTCAATTTGTTCTCTG
*
67565646 ACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACATGAAAGCCAAATCAGC
1 ACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCAGC
* * *
67565711 TATGCCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTCGGATCTGCTTCAATATA
66 TATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTGCTTCAGTATA
* * *
67565776 AACATATGAAGGCCAGATCTGCTATGTG-CCTCTGTCGAATATGGAGACGCCAAACTTTGATTTG
131 AACATATGAAGGCTAGATCTGCTATGTGCCCTCTATCGAATATGGAGACGCCAAACTTCGATTTG
*
67565840 TTTTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCA
196 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCA
67565905 AATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTGCTT
261 AATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTGCTT
*
67565970 CAGTATAAACATATGAAGGTCAGATCTGCTATGTGCCTGCTCTCTGTCGAATATGGAGACGCCAA
326 CAGTATAAACATATGAAGGTCAGATCTGCTATGTGCCTGCTCTCCGTCGAATATGGAGACGCCAA
*
67566035 ACTTCGATTTGTTCTCTG
391 ACTTCAATTTGTTCTCTG
*
67566053 ATAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCAGC
1 ACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCAGC
67566118 TATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTGCTTCAGTATA
66 TATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTGCTTCAGTATA
* *
67566183 AACATATGAAGGCTATATCTGCTATGTGTCTGCTCTCCATCGAATATGGAGACGCCAAACTTCGA
131 AACATATGAAGGCTAGATCTGCTATGTG-C--C-CTCTATCGAATATGGAGACGCCAAACTTCGA
* * * *
67566248 TTTGTTCTCTGACAATACAGAGATGCCAAATTATCTTAGATTTGCTTTATCATAAACA-GTGAAA
192 TTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAA
*
67566312 GCCAAATCGGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATC
257 GCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATC
67566366 TTCTATCTTC
Statistics
Matches: 666, Mismatches: 49, Indels: 11
0.92 0.07 0.02
Matches are distributed among these distances:
407 384 0.58
408 2 0.00
410 2 0.00
411 60 0.09
412 218 0.33
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.30
Consensus pattern (408 bp):
ACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCAGC
TATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTGCTTCAGTATA
AACATATGAAGGCTAGATCTGCTATGTGCCCTCTATCGAATATGGAGACGCCAAACTTCGATTTG
TTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCA
AATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTGCTT
CAGTATAAACATATGAAGGTCAGATCTGCTATGTGCCTGCTCTCCGTCGAATATGGAGACGCCAA
ACTTCAATTTGTTCTCTG
Found at i:67566383 original size:44 final size:44
Alignment explanation
Indices: 67566312--67566805 Score: 328
Period size: 44 Copynumber: 11.2 Consensus size: 44
67566302 AACAGTGAAA
* * * * * * *
67566312 GCCAAATCGGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGAT
1 GCCAAATCTGCTA--TCTTCAACTTGTTCCCTATAAACACAGGGAT
*
67566358 GCCAAATCTTCTATCTTCAACTTGTTCCCTATAAACACAGGGAT
1 GCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGAT
** * * * * *
67566402 GCC--ATGCTGAAATCTTCGA-TCTGCTTCACTGTAAGCACAGGAAT
1 GCCAAAT-CTGCTATCTTCAACT-TG-TTCCCTATAAACACAGGGAT
* * * * *
67566446 GTCAGATCTGCTATCTTCGATTTGTTCCCTATAAACACGGGGAT
1 GCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGAT
67566490 GCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGAT
1 GCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGAT
* ** * * * * *
67566534 GCC--ATGATGAAATCTTCGA-TCTGCTTCGCTGTAAGCACAGGAAT
1 GCCAAAT-CTGCTATCTTCAACT-TG-TTCCCTATAAACACAGGGAT
** * ** *
67566578 ATCAGATCTGCTATCTTTGATTTGTTCCCTATAAACACAGGGAT
1 GCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGAT
* * *
67566622 GCCAAATCTGCTATCTTCAACTTGTTCCGTAAAAACAAAGGGAT
1 GCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGAT
** *
67566666 GCC--ATGCTGAAATCTTCAACTTGTCCCCTATAAACACAGGGAT
1 GCCAAAT-CTGCTATCTTCAACTTGTTCCCTATAAACACAGGGAT
** * * * *
67566709 GCC--ATGCTGAAATCTTCGA-TCTGCTTCGCTGTAAGCACA-GGAGT
1 GCCAAAT-CTGCTATCTTCAACT-TG-TTCCCTATAAACACAGGGA-T
* * * * *
67566753 GTCAGATCTGCTATCTTCGATTTGTTCCCTATAAATACAGGGAT
1 GCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGAT
67566797 GCCAAATCT
1 GCCAAATCT
67566806 TATTTCTTTG
Statistics
Matches: 352, Mismatches: 76, Indels: 42
0.75 0.16 0.09
Matches are distributed among these distances:
42 9 0.03
43 76 0.22
44 207 0.59
45 40 0.11
46 20 0.06
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.30
Consensus pattern (44 bp):
GCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGAT
Found at i:67566492 original size:132 final size:132
Alignment explanation
Indices: 67566327--67566682 Score: 595
Period size: 132 Copynumber: 2.7 Consensus size: 132
67566317 ATCGGCTATG
* * * * *
67566327 TCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCTTCTATCTTCAACTTGTTCCCTATAA
1 TCTTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAA
*
67566392 ACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGC
66 ACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATATCAGATCTGC
67566457 TA
131 TA
*
67566459 TCTTCGATTTGTTCCCTATAAACACGGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAA
1 TCTTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAA
* *
67566524 ACACAGGGATGCCATGATGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATATCAGATCTGC
66 ACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATATCAGATCTGC
67566589 TA
131 TA
* * *
67566591 TCTTTGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCGTAAAA
1 TCTTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAA
*
67566656 ACAAAGGGATGCCATGCTGAAATCTTC
66 ACACAGGGATGCCATGCTGAAATCTTC
67566683 AACTTGTCCC
Statistics
Matches: 209, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 209 1.00
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (132 bp):
TCTTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAA
ACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATATCAGATCTGC
TA
Found at i:67566743 original size:175 final size:175
Alignment explanation
Indices: 67566413--67566805 Score: 563
Period size: 175 Copynumber: 2.2 Consensus size: 175
67566403 CCATGCTGAA
* * * * * * * * * *
67566413 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
1 ATCTTCGATTTG-TTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTAA
** ** *
67566478 AAACACGGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGATG
65 AAACAAAGGGATGCC-AATCTGAAATCTTCAACTTGTCCCCTATAAACACAGGGATGCCATGATG
67566543 AAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATATCAGATCTGCT
129 AAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATATCAGATCTGCT
* *
67566590 ATCTTTGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCGTAAA
1 ATCTTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTAAA
*
67566655 AACAAAGGGATGCC-ATGCTGAAATCTTCAACTTGTCCCCTATAAACACAGGGATGCCATGCTGA
66 AACAAAGGGATGCCAAT-CTGAAATCTTCAACTTGTCCCCTATAAACACAGGGATGCCATGATGA
* *
67566719 AATCTTCGATCTGCTTCGCTGTAAGCACAGGAGTGTCAGATCTGCT
130 AATCTTCGATCTGCTTCGCTGTAAGCACAGGAATATCAGATCTGCT
*
67566765 ATCTTCGATTTGTTCCCTATAAATACAGGGATGCCAAATCT
1 ATCTTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCT
67566806 TATTTCTTTG
Statistics
Matches: 193, Mismatches: 22, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
174 2 0.01
175 126 0.65
176 55 0.28
177 10 0.05
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.30
Consensus pattern (175 bp):
ATCTTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTAAA
AACAAAGGGATGCCAATCTGAAATCTTCAACTTGTCCCCTATAAACACAGGGATGCCATGATGAA
ATCTTCGATCTGCTTCGCTGTAAGCACAGGAATATCAGATCTGCT
Found at i:67567665 original size:7 final size:7
Alignment explanation
Indices: 67567653--67567721 Score: 54
Period size: 7 Copynumber: 9.7 Consensus size: 7
67567643 GGCCTCTCCA
67567653 TTTTTCT
1 TTTTTCT
67567660 TTTTTCAT
1 TTTTTC-T
*
67567668 TTGTCTCT
1 TT-TTTCT
67567676 TTTTTCT
1 TTTTTCT
67567683 TTTTAT-T
1 TTTT-TCT
67567690 TTTTTCT
1 TTTTTCT
67567697 CTTTTT-T
1 -TTTTTCT
*
67567704 TTTAT-T
1 TTTTTCT
*
67567710 TTTTCCT
1 TTTTTCT
67567717 TTTTT
1 TTTTT
67567722 TTGAAATAGA
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
6 9 0.18
7 26 0.52
8 12 0.24
9 3 0.06
ACGTcount: A:0.04, C:0.13, G:0.01, T:0.81
Consensus pattern (7 bp):
TTTTTCT
Found at i:67567683 original size:23 final size:23
Alignment explanation
Indices: 67567653--67567703 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
67567643 GGCCTCTCCA
67567653 TTTTTCTTTTT-TCATTTGTCTCT
1 TTTTTCTTTTTAT-ATTTGTCTCT
* *
67567676 TTTTTCTTTTTATTTTTTTCTCT
1 TTTTTCTTTTTATATTTGTCTCT
67567699 TTTTT
1 TTTTT
67567704 TTTATTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 24 0.96
24 1 0.04
ACGTcount: A:0.04, C:0.14, G:0.02, T:0.80
Consensus pattern (23 bp):
TTTTTCTTTTTATATTTGTCTCT
Found at i:67567711 original size:19 final size:19
Alignment explanation
Indices: 67567677--67567723 Score: 69
Period size: 18 Copynumber: 2.4 Consensus size: 19
67567667 TTTGTCTCTT
67567677 TTTTCTTTTTATTTTTTTCTC
1 TTTT-TTTTTATTTTTTTC-C
67567698 TTTTTTTTTA-TTTTTTCC
1 TTTTTTTTTATTTTTTTCC
67567716 TTTTTTTT
1 TTTTTTTT
67567724 GAAATAGAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
18 9 0.35
19 7 0.27
20 6 0.23
21 4 0.15
ACGTcount: A:0.04, C:0.11, G:0.00, T:0.85
Consensus pattern (19 bp):
TTTTTTTTTATTTTTTTCC
Found at i:67571317 original size:40 final size:39
Alignment explanation
Indices: 67571242--67571466 Score: 272
Period size: 40 Copynumber: 5.6 Consensus size: 39
67571232 AACCCAAGTA
* **
67571242 CCTTCGGGATTTAG-CCGGATATAGCAACTCCCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGC-ACTAGCACAAATG
* *
67571281 CCTTCGGGTCTTAGCTCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CACTAGCACAAATG
* *
67571321 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGAACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGC-ACTA---GCACAAATG
* *
67571364 CCTTCAGGACTTCGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CACTAGCACAAATG
* *
67571404 CCTTCGGGACTTAGCCCGGATATAGGAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATA-GCACTAGCACAAATG
67571444 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
67571467 CATCCGAACA
Statistics
Matches: 161, Mismatches: 17, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
39 13 0.08
40 111 0.69
41 2 0.01
43 34 0.21
44 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGATATAGCACTAGCACAAATG
Found at i:67571366 original size:83 final size:83
Alignment explanation
Indices: 67571242--67571466 Score: 329
Period size: 83 Copynumber: 2.8 Consensus size: 83
67571232 AACCCAAGTA
* * *
67571242 CCTTCGGGATTTAG-CCGGATATAGCAACT-C-C-CACAAATGCCTTCGGGTCTTAGCTCGGATA
1 CCTTCGGGACTTAGCCCGGATATAGCAACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
67571303 TAGTCACTAGCACAAATG
66 TAGTCACTAGCACAAATG
* * * *
67571321 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGAACAAATGCCTTCAGGACTTCGCCCGGATA
1 CCTTCGGGACTTAGCCCGGATATAGCAACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
67571386 TAGTCACTAGCACAAATG
66 TAGTCACTAGCACAAATG
*
67571404 CCTTCGGGACTTAGCCCGGATATAG-GA--ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
1 CCTTCGGGACTTAGCCCGGATATAGCAACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
67571466 T
66 T
67571467 CATCCGAACA
Statistics
Matches: 130, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
79 13 0.10
80 47 0.36
81 1 0.01
82 2 0.02
83 67 0.52
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (83 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
TAGTCACTAGCACAAATG
Found at i:67578991 original size:27 final size:27
Alignment explanation
Indices: 67578960--67579137 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
67578950 TAAATTGTAC
67578960 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
67578987 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
67579013 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
67579041 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
67579069 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
67579096 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
67579123 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
67579138 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:67579074 original size:82 final size:81
Alignment explanation
Indices: 67578961--67579116 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
67578951 AAATTGTACA
* *
67578961 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
67579025 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
67579042 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
67579107 TGCGAGTTGA
65 TGCGAATTGA
67579117 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:67579128 original size:82 final size:81
Alignment explanation
Indices: 67578957--67579137 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
67578947 GATTAAATTG
* *
67578957 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
67579022 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
67579038 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
67579102 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
67579120 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
67579138 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:67586876 original size:27 final size:27
Alignment explanation
Indices: 67586845--67587022 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
67586835 TAAATTGTAC
67586845 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
67586872 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
67586898 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
67586926 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
67586954 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
67586981 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
67587008 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
67587023 GACTTAATAT
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 107 0.82
28 23 0.18
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:67587013 original size:82 final size:81
Alignment explanation
Indices: 67586842--67587022 Score: 238
Period size: 82 Copynumber: 2.2 Consensus size: 81
67586832 GATTAAATTG
* *
67586842 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
67586907 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
67586923 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
67586987 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
*
67587005 TATAGCACTAAGTGTGCG
1 TACAGCACTAAGTGTGCG
67587023 GACTTAATAT
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 18 0.21
82 67 0.79
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:67591856 original size:46 final size:46
Alignment explanation
Indices: 67591803--67591978 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
67591793 TGGTTGAGCA
67591803 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * * *
67591849 TCTGAACTTGTTGAGTTGAGTTCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
67591894 CATCCCAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
67591942 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67591979 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 18, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 59 0.57
47 25 0.24
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:67591959 original size:93 final size:93
Alignment explanation
Indices: 67591800--67591971 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
67591790 GGATGGTTGA
* * * * *
67591800 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTTGTTGAGT
1 GCATCCCAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
67591865 TGAGTTCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
67591893 GCATCCCAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCCAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
67591958 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
67591972 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCCAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:67594625 original size:48 final size:48
Alignment explanation
Indices: 67594465--67594639 Score: 171
Period size: 48 Copynumber: 3.7 Consensus size: 48
67594455 ATGGATGTGT
* *
67594465 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCACATTAT-GAGA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCAATATCGAGA
* * * * * *
67594511 GCTAGTGTAAAACCATGTTTGGGACATGGCATCAGCATTAAGA-CGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACATGGCATCGGCCTCAATATCGAGA
* * *
67594559 GCAATTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGATATCCA-A
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCCTC-A-ATATCGAGA
* *
67594607 GCTAGTGTAAGACCTGTCTAGGACATGGCATCG
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCG
67594640 ACTTGACACG
Statistics
Matches: 101, Mismatches: 21, Indels: 11
0.76 0.16 0.08
Matches are distributed among these distances:
46 19 0.19
47 27 0.27
48 47 0.47
49 8 0.08
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.23
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCAATATCGAGA
Found at i:67594719 original size:49 final size:49
Alignment explanation
Indices: 67594656--67594783 Score: 170
Period size: 49 Copynumber: 2.6 Consensus size: 49
67594646 CACGTGTCAG
*
67594656 TGTAAGACCTATTTGGGACATGGCATCGACACT-GATAGATGAAAGCCAA
1 TGTAAGACCTATTTGGGACATGGCATCGAC-CTCGATAAATGAAAGCCAA
** * *
67594705 TGTAAGACCTATTTGGGACATGAAATC-AGCCTCGATAAATGAAAGTCAG
1 TGTAAGACCTATTTGGGACATGGCATCGA-CCTCGATAAATGAAAGCCAA
*
67594754 TGTAAGACCTGTTTGGGACATGGCATCGAC
1 TGTAAGACCTATTTGGGACATGGCATCGAC
67594784 TTAGAAACAA
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
48 3 0.04
49 64 0.94
50 1 0.01
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (49 bp):
TGTAAGACCTATTTGGGACATGGCATCGACCTCGATAAATGAAAGCCAA
Found at i:67600232 original size:46 final size:46
Alignment explanation
Indices: 67600182--67600310 Score: 222
Period size: 46 Copynumber: 2.8 Consensus size: 46
67600172 TGGTTGAGCA
*
67600182 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
67600228 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
67600274 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67600311 GCGGGTTACA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:67617056 original size:10 final size:10
Alignment explanation
Indices: 67617041--67617110 Score: 56
Period size: 10 Copynumber: 7.2 Consensus size: 10
67617031 TACTTCGAAT
67617041 TTTTTTTCAA
1 TTTTTTTCAA
*
67617051 TTTTTTT--T
1 TTTTTTTCAA
*
67617059 TTTTTTTCGA
1 TTTTTTTCAA
67617069 TTTTTTTCAA
1 TTTTTTTCAA
* *
67617079 TTTTCTTC-T
1 TTTTTTTCAA
* *
67617088 TTTTTTTGATT
1 TTTTTTTCA-A
67617099 TTTTTTTCAA
1 TTTTTTTCAA
67617109 TT
1 TT
67617111 ACAATATGCT
Statistics
Matches: 47, Mismatches: 9, Indels: 8
0.73 0.14 0.12
Matches are distributed among these distances:
8 7 0.15
9 6 0.13
10 25 0.53
11 9 0.19
ACGTcount: A:0.11, C:0.09, G:0.03, T:0.77
Consensus pattern (10 bp):
TTTTTTTCAA
Found at i:67617061 original size:18 final size:18
Alignment explanation
Indices: 67617040--67617075 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
67617030 ATACTTCGAA
67617040 TTTTTTTTCAATTTTTTT
1 TTTTTTTTCAATTTTTTT
*
67617058 TTTTTTTTCGATTTTTTT
1 TTTTTTTTCAATTTTTTT
67617076 CAATTTTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.08, C:0.06, G:0.03, T:0.83
Consensus pattern (18 bp):
TTTTTTTTCAATTTTTTT
Found at i:67617068 original size:30 final size:31
Alignment explanation
Indices: 67617034--67617110 Score: 108
Period size: 30 Copynumber: 2.6 Consensus size: 31
67617024 TTTTTAATAC
*
67617034 TTCGAATTTTTTTTCAATTTT-TTTTTTTTT
1 TTCGAATTTTTTTTCAATTTTCTTCTTTTTT
67617064 TTCG-A-TTTTTTTCAATTTTCTTCTTTTTT
1 TTCGAATTTTTTTTCAATTTTCTTCTTTTTT
*
67617093 TT-GATTTTTTTTTCAATT
1 TTCGAATTTTTTTTCAATT
67617111 ACAATATGCT
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
28 15 0.36
29 11 0.26
30 16 0.38
ACGTcount: A:0.13, C:0.09, G:0.04, T:0.74
Consensus pattern (31 bp):
TTCGAATTTTTTTTCAATTTTCTTCTTTTTT
Found at i:67617072 original size:28 final size:28
Alignment explanation
Indices: 67617041--67617103 Score: 101
Period size: 28 Copynumber: 2.2 Consensus size: 28
67617031 TACTTCGAAT
*
67617041 TTTTTTTCAATTTT-TTTTTTTTTTTCGA
1 TTTTTTTCAATTTTCTTCTTTTTTTT-GA
67617069 TTTTTTTCAATTTTCTTCTTTTTTTTGA
1 TTTTTTTCAATTTTCTTCTTTTTTTTGA
67617097 TTTTTTT
1 TTTTTTT
67617104 TTCAATTACA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
28 23 0.70
29 10 0.30
ACGTcount: A:0.10, C:0.08, G:0.03, T:0.79
Consensus pattern (28 bp):
TTTTTTTCAATTTTCTTCTTTTTTTTGA
Found at i:67618791 original size:22 final size:21
Alignment explanation
Indices: 67618753--67618824 Score: 65
Period size: 23 Copynumber: 3.3 Consensus size: 21
67618743 GTAATTGAAC
* *
67618753 AAAAAAA-TCAAAAAAAAAAG
1 AAAAAAATTGAAAAAAAAACG
*
67618773 AAGAGAAATTCGAAAAAAAAATCG
1 AA-AAAAATT-GAAAAAAAAA-CG
**
67618797 AAAAAAATTGAAAAAAAATTG
1 AAAAAAATTGAAAAAAAAACG
67618818 AAAAAAA
1 AAAAAAA
67618825 ATTCGAAGTA
Statistics
Matches: 42, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
20 2 0.05
21 12 0.29
22 10 0.24
23 15 0.36
24 3 0.07
ACGTcount: A:0.75, C:0.04, G:0.10, T:0.11
Consensus pattern (21 bp):
AAAAAAATTGAAAAAAAAACG
Found at i:67618792 original size:23 final size:22
Alignment explanation
Indices: 67618753--67618824 Score: 69
Period size: 21 Copynumber: 3.3 Consensus size: 22
67618743 GTAATTGAAC
*
67618753 AAAAAAA-TCAAAAAAAAA-AG
1 AAAAAAATTGAAAAAAAAATAG
* *
67618773 AAGAGAAATTCGAAAAAAAAATCG
1 AA-AAAAATT-GAAAAAAAAATAG
*
67618797 AAAAAAATTG-AAAAAAAATTG
1 AAAAAAATTGAAAAAAAAATAG
67618818 AAAAAAA
1 AAAAAAA
67618825 ATTCGAAGTA
Statistics
Matches: 43, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
20 2 0.05
21 21 0.49
22 2 0.05
23 15 0.35
24 3 0.07
ACGTcount: A:0.75, C:0.04, G:0.10, T:0.11
Consensus pattern (22 bp):
AAAAAAATTGAAAAAAAAATAG
Found at i:67618794 original size:34 final size:33
Alignment explanation
Indices: 67618745--67618825 Score: 99
Period size: 34 Copynumber: 2.4 Consensus size: 33
67618735 AGCATATTGT
* *
67618745 AATTGAACAAAAAAATCAAAAAAAAAAGAAGAGA
1 AATTGAA-AAAAAAATCAAAAAAAAAAGAAAAAA
* **
67618779 AATTCGAAAAAAAAATCGAAAAAAATTGAAAAAA
1 AATT-GAAAAAAAAATCAAAAAAAAAAGAAAAAA
67618813 AATTGAAAAAAAA
1 AATTGAAAAAAAA
67618826 TTCGAAGTAT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
33 9 0.22
34 29 0.71
35 3 0.07
ACGTcount: A:0.73, C:0.05, G:0.10, T:0.12
Consensus pattern (33 bp):
AATTGAAAAAAAAATCAAAAAAAAAAGAAAAAA
Found at i:67618826 original size:11 final size:11
Alignment explanation
Indices: 67618745--67618827 Score: 69
Period size: 11 Copynumber: 7.4 Consensus size: 11
67618735 AGCATATTGT
67618745 AATTGAACAAAA
1 AATTGAA-AAAA
* *
67618757 AAATCAAAAAA
1 AATTGAAAAAA
** * *
67618768 AAAAGAAGAGA
1 AATTGAAAAAA
67618779 AATTCGAAAAAAA
1 AATT-G-AAAAAA
*
67618792 AATCG-AAAAA
1 AATTGAAAAAA
67618802 AATTGAAAAAA
1 AATTGAAAAAA
67618813 AATTGAAAAAA
1 AATTGAAAAAA
67618824 AATT
1 AATT
67618828 CGAAGTATTA
Statistics
Matches: 56, Mismatches: 12, Indels: 7
0.75 0.16 0.09
Matches are distributed among these distances:
10 9 0.16
11 33 0.59
12 7 0.12
13 7 0.12
ACGTcount: A:0.71, C:0.05, G:0.10, T:0.14
Consensus pattern (11 bp):
AATTGAAAAAA
Found at i:67632432 original size:19 final size:18
Alignment explanation
Indices: 67632396--67632435 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
67632386 TTTCCACTCG
*
67632396 TTTCTTTTTCAACTTCTC
1 TTTCTTTTTCAACATCTC
*
67632414 TTTCTTTTTCCACAATCTC
1 TTTCTTTTTCAAC-ATCTC
67632433 TTT
1 TTT
67632436 GTTTGTTGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.12, C:0.28, G:0.00, T:0.60
Consensus pattern (18 bp):
TTTCTTTTTCAACATCTC
Found at i:67634363 original size:30 final size:30
Alignment explanation
Indices: 67634329--67634425 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
67634319 TAAACTAAAA
*
67634329 TGAGCTAAGTTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
* * * * * * *
67634359 TGAGCTGAGGCTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
67634389 TGAGCTAAGGTTTAGCTCGTGAGCTAAA-T
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
67634418 ATGAGCTA
1 -TGAGCTA
67634426 GGAGTGAGCT
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
Found at i:67636618 original size:12 final size:12
Alignment explanation
Indices: 67636603--67636633 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
67636593 TTCTTTTTGC
67636603 TTTTCAAAGGCT
1 TTTTCAAAGGCT
67636615 TTTTCAAAGGCT
1 TTTTCAAAGGCT
67636627 TTTTCAA
1 TTTTCAA
67636634 GTTCTCTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.26, C:0.16, G:0.13, T:0.45
Consensus pattern (12 bp):
TTTTCAAAGGCT
Found at i:67636703 original size:6 final size:6
Alignment explanation
Indices: 67636694--67636743 Score: 59
Period size: 6 Copynumber: 8.2 Consensus size: 6
67636684 TTTCTTTTTA
67636694 TTTCTT TTTCTT TTTCTT CTCTTGCTT TTTCTT TTTC-T TTTC-T TTTCTT
1 TTTCTT TTTCTT TTTCTT -T-TT-CTT TTTCTT TTTCTT TTTCTT TTTCTT
67636743 T
1 T
67636744 GTTTTCTCTT
Statistics
Matches: 40, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
5 10 0.25
6 21 0.52
7 3 0.08
8 3 0.08
9 3 0.08
ACGTcount: A:0.00, C:0.20, G:0.02, T:0.78
Consensus pattern (6 bp):
TTTCTT
Found at i:67636705 original size:21 final size:20
Alignment explanation
Indices: 67636681--67636743 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 20
67636671 CTCTTGCCTC
67636681 TCTTTTCTTTTTATTTCTTTT
1 TCTTTTCTTTTT-TTTCTTTT
* * *
67636702 TCTTTTTCTTCTCTTGCTTTT
1 TC-TTTTCTTTTTTTTCTTTT
67636723 TCTTTTTCTTTTCTTTTCTTT
1 TC-TTTTCTTTT-TTTTCTTT
67636744 GTTTTCTCTT
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
21 20 0.59
22 14 0.41
ACGTcount: A:0.02, C:0.19, G:0.02, T:0.78
Consensus pattern (20 bp):
TCTTTTCTTTTTTTTCTTTT
Found at i:67636726 original size:37 final size:37
Alignment explanation
Indices: 67636683--67636753 Score: 101
Period size: 37 Copynumber: 1.9 Consensus size: 37
67636673 CTTGCCTCTC
67636683 TTTTCTTTTTA-TTTCTTTTTCTTT-TTCTTCTCTTGCT
1 TTTTCTTTTTATTTTC-TTTTCTTTGTT-TTCTCTTGCT
*
67636720 TTTTCTTTTTCTTTTCTTTTCTTTGTTTTCTCTT
1 TTTTCTTTTTATTTTCTTTTCTTTGTTTTCTCTT
67636754 TACAAGAATG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
37 25 0.81
38 6 0.19
ACGTcount: A:0.01, C:0.18, G:0.03, T:0.77
Consensus pattern (37 bp):
TTTTCTTTTTATTTTCTTTTCTTTGTTTTCTCTTGCT
Found at i:67636753 original size:27 final size:26
Alignment explanation
Indices: 67636681--67636754 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 26
67636671 CTCTTGCCTC
67636681 TCTTTTCTTT-TTATTTCTTTTTCTTT
1 TCTTTTCTTTGTT-TTTCTTTTTCTTT
*
67636707 T-TCTTCTCTTGCTTTTTCTTTTTCTTT
1 TCTTTTCT-TTG-TTTTTCTTTTTCTTT
67636734 TCTTTTCTTTGTTTTCTCTTT
1 TCTTTTCTTTGTTTT-TCTTT
67636755 ACAAGAATGT
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
25 5 0.12
26 7 0.17
27 22 0.54
28 7 0.17
ACGTcount: A:0.01, C:0.19, G:0.03, T:0.77
Consensus pattern (26 bp):
TCTTTTCTTTGTTTTTCTTTTTCTTT
Found at i:67639184 original size:12 final size:12
Alignment explanation
Indices: 67639155--67639240 Score: 77
Period size: 12 Copynumber: 6.8 Consensus size: 12
67639145 AGGTTTGTAA
67639155 AAAAAAAAAGTTTC
1 AAAAAAAAA--TTC
67639169 AAAAAAAAA-TC
1 AAAAAAAAATTC
67639180 -AAAAAAAATTC
1 AAAAAAAAATTC
*
67639191 GAAAAAAAATTGATTG
1 -AAAAAAAA---ATTC
67639207 AAAAAAAAATTC
1 AAAAAAAAATTC
* *
67639219 AAAAAAAAAGTG
1 AAAAAAAAATTC
67639231 AAAAAAAAAT
1 AAAAAAAAAT
67639241 CGAGCAAAAA
Statistics
Matches: 61, Mismatches: 5, Indels: 14
0.76 0.06 0.17
Matches are distributed among these distances:
10 8 0.13
11 4 0.07
12 22 0.36
13 7 0.11
14 9 0.15
15 8 0.13
16 3 0.05
ACGTcount: A:0.72, C:0.05, G:0.07, T:0.16
Consensus pattern (12 bp):
AAAAAAAAATTC
Found at i:67639238 original size:28 final size:28
Alignment explanation
Indices: 67639180--67639239 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
67639170 AAAAAAAATC
* * ***
67639180 AAAAAAAATTCGAAAAAAAATTGATTGA
1 AAAAAAAATTCAAAAAAAAAGTGAAAAA
67639208 AAAAAAAATTCAAAAAAAAAGTGAAAAA
1 AAAAAAAATTCAAAAAAAAAGTGAAAAA
67639236 AAAA
1 AAAA
67639240 TCGAGCAAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.73, C:0.03, G:0.08, T:0.15
Consensus pattern (28 bp):
AAAAAAAATTCAAAAAAAAAGTGAAAAA
Found at i:67639249 original size:15 final size:15
Alignment explanation
Indices: 67639218--67639269 Score: 58
Period size: 16 Copynumber: 3.6 Consensus size: 15
67639208 AAAAAAAATT
67639218 CAAAAAAAAAGT--G
1 CAAAAAAAAAGTGAG
67639231 -AAAAAAAAA-TCGAG
1 CAAAAAAAAAGT-GAG
67639245 CAAAAAAAAAGGTGAG
1 CAAAAAAAAA-GTGAG
67639261 CAAAAAAAA
1 CAAAAAAAA
67639270 TCAAGTTAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
11 1 0.03
12 9 0.27
14 1 0.03
15 9 0.27
16 12 0.36
17 1 0.03
ACGTcount: A:0.71, C:0.08, G:0.15, T:0.06
Consensus pattern (15 bp):
CAAAAAAAAAGTGAG
Found at i:67639250 original size:39 final size:38
Alignment explanation
Indices: 67639168--67639254 Score: 99
Period size: 40 Copynumber: 2.3 Consensus size: 38
67639158 AAAAAAGTTT
* *
67639168 CAAAAAAAAATCAAAAAAAATTCGAAAAAAAATTGATTG
1 CAAAAAAAAATCAAAAAAAAGTCGAAAAAAAATCGA-TG
67639207 -AAAAAAAAATTCAAAAAAAAAGT-GAAAAAAAAATCGA-G
1 CAAAAAAAAA-TC-AAAAAAAAGTCG-AAAAAAAATCGATG
67639245 CAAAAAAAAA
1 CAAAAAAAAA
67639255 GGTGAGCAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
38 10 0.24
39 12 0.29
40 20 0.48
ACGTcount: A:0.72, C:0.07, G:0.08, T:0.13
Consensus pattern (38 bp):
CAAAAAAAAATCAAAAAAAAGTCGAAAAAAAATCGATG
Found at i:67639266 original size:30 final size:28
Alignment explanation
Indices: 67639218--67639291 Score: 89
Period size: 30 Copynumber: 2.6 Consensus size: 28
67639208 AAAAAAAATT
*
67639218 CAAAAAAAAA-GTGAAAAAAAAATCGAG
1 CAAAAAAAAAGGTGAAAAAAAAATCAAG
67639245 CAAAAAAAAAGGTGAGCAAAAAAAATCAAG
1 CAAAAAAAAAGGTGA--AAAAAAAATCAAG
**
67639275 TTAAAAAAAA-GTGAAAA
1 CAAAAAAAAAGGTGAAAA
67639292 GTCTTGCGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
27 13 0.32
28 4 0.10
29 4 0.10
30 20 0.49
ACGTcount: A:0.69, C:0.07, G:0.15, T:0.09
Consensus pattern (28 bp):
CAAAAAAAAAGGTGAAAAAAAAATCAAG
Found at i:67640228 original size:12 final size:12
Alignment explanation
Indices: 67640195--67640250 Score: 53
Period size: 12 Copynumber: 4.7 Consensus size: 12
67640185 AAAAGAAATT
67640195 GAGATTGAAAAA
1 GAGATTGAAAAA
67640207 G-GATGTGAAAAA
1 GAGAT-TGAAAAA
*
67640219 GAGATAG-AAAA
1 GAGATTGAAAAA
* *
67640230 GAAAATTGAAAAT
1 G-AGATTGAAAAA
67640243 GAGATTGA
1 GAGATTGA
67640251 GAATAAAAAC
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
11 8 0.23
12 20 0.57
13 7 0.20
ACGTcount: A:0.55, C:0.00, G:0.27, T:0.18
Consensus pattern (12 bp):
GAGATTGAAAAA
Found at i:67640329 original size:17 final size:18
Alignment explanation
Indices: 67640297--67640330 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
67640287 AAAAGAGAGT
*
67640297 GAGATTGAAGGAAGAAAC
1 GAGAGTGAAGGAAGAAAC
67640315 GAGAGTGAA-GAAGAAA
1 GAGAGTGAAGGAAGAAA
67640331 GGAGTGTTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.53, C:0.03, G:0.35, T:0.09
Consensus pattern (18 bp):
GAGAGTGAAGGAAGAAAC
Found at i:67643800 original size:14 final size:14
Alignment explanation
Indices: 67643781--67643834 Score: 92
Period size: 14 Copynumber: 3.9 Consensus size: 14
67643771 ACTAGCTCTC
67643781 TTTTTTTTCACAAT
1 TTTTTTTTCACAAT
67643795 TTTTTTTTCACAA-
1 TTTTTTTTCACAAT
*
67643808 TTTTTTTTCAAAAT
1 TTTTTTTTCACAAT
67643822 TTTTTTTTCACAA
1 TTTTTTTTCACAA
67643835 CTGGATATCC
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
13 12 0.32
14 25 0.68
ACGTcount: A:0.24, C:0.13, G:0.00, T:0.63
Consensus pattern (14 bp):
TTTTTTTTCACAAT
Found at i:67643812 original size:27 final size:27
Alignment explanation
Indices: 67643781--67643834 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
67643771 ACTAGCTCTC
*
67643781 TTTTTTTTCACAATTTTTTTTTCACAA
1 TTTTTTTTCAAAATTTTTTTTTCACAA
67643808 TTTTTTTTCAAAATTTTTTTTTCACAA
1 TTTTTTTTCAAAATTTTTTTTTCACAA
67643835 CTGGATATCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.24, C:0.13, G:0.00, T:0.63
Consensus pattern (27 bp):
TTTTTTTTCAAAATTTTTTTTTCACAA
Found at i:67648065 original size:23 final size:22
Alignment explanation
Indices: 67648027--67648073 Score: 67
Period size: 23 Copynumber: 2.1 Consensus size: 22
67648017 AGAAGTGAGC
*
67648027 AAAAAAAGAAAAAAAAAGTAAA
1 AAAAAAACAAAAAAAAAGTAAA
*
67648049 AAAAAGAACAAAAAAAAAGTGAA
1 AAAAA-AACAAAAAAAAAGTAAA
67648072 AA
1 AA
67648074 GTCTTGCGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 5 0.23
23 17 0.77
ACGTcount: A:0.83, C:0.02, G:0.11, T:0.04
Consensus pattern (22 bp):
AAAAAAACAAAAAAAAAGTAAA
Found at i:67648073 original size:10 final size:10
Alignment explanation
Indices: 67648027--67648064 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
67648017 AGAAGTGAGC
67648027 AAAAAAAGAA
1 AAAAAAAGAA
*
67648037 AAAAAAAGTA
1 AAAAAAAGAA
67648047 AAAAAAAGAA
1 AAAAAAAGAA
67648057 CAAAAAAA
1 -AAAAAAA
67648065 AAGTGAAAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
10 18 0.72
11 7 0.28
ACGTcount: A:0.87, C:0.03, G:0.08, T:0.03
Consensus pattern (10 bp):
AAAAAAAGAA
Found at i:67649161 original size:48 final size:47
Alignment explanation
Indices: 67649082--67649187 Score: 135
Period size: 48 Copynumber: 2.2 Consensus size: 47
67649072 GAGTGTCATG
*
67649082 GAAAAAGAAATTGAGATTGAAAAAGGATGTGA-AAAAGAGAAAGAAATC
1 GAAAAAGAAATTGAGATTGAAAAAAGATGTGAGAAAA-AGAAA-AAATC
* *
67649130 GAAAAAGAAATTGAGATTGAACAAAAG-TGTGAGGAAAAAGAGAAAATT
1 GAAAAAGAAATTGAGATTGAA-AAAAGATGTGA-GAAAAAGAAAAAATC
67649178 GAAAAAGAAA
1 GAAAAAGAAA
67649188 GAAAAGACAA
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
48 40 0.77
49 8 0.15
50 4 0.08
ACGTcount: A:0.59, C:0.02, G:0.25, T:0.14
Consensus pattern (47 bp):
GAAAAAGAAATTGAGATTGAAAAAAGATGTGAGAAAAAGAAAAAATC
Found at i:67650891 original size:20 final size:20
Alignment explanation
Indices: 67650845--67650891 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
67650835 AGCTCGTTTC
*
67650845 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* *
67650865 CAACTCACTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
67650885 CAGCTCA
1 CAGCTCA
67650892 ATCTTAACCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.36, G:0.13, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:67652435 original size:14 final size:15
Alignment explanation
Indices: 67652418--67652462 Score: 56
Period size: 17 Copynumber: 2.9 Consensus size: 15
67652408 AAGAAGATGA
67652418 GAAAAGAAAA-AGAT
1 GAAAAGAAAAGAGAT
67652432 GAAAAGCAAAAGGAGAT
1 GAAAAG-AAAA-GAGAT
*
67652449 TAAAAGAAAAGAGA
1 GAAAAGAAAAGAGA
67652463 AGCAATAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
14 6 0.22
15 8 0.30
16 4 0.15
17 9 0.33
ACGTcount: A:0.67, C:0.02, G:0.24, T:0.07
Consensus pattern (15 bp):
GAAAAGAAAAGAGAT
Found at i:67652592 original size:18 final size:18
Alignment explanation
Indices: 67652569--67652605 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
67652559 GGAAAAGAAC
* *
67652569 AAAAAGAGATTGACAAAG
1 AAAAAGAAATTGAAAAAG
67652587 AAAAAGAAATTGAAAAAG
1 AAAAAGAAATTGAAAAAG
67652605 A
1 A
67652606 CATTGTGATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.68, C:0.03, G:0.19, T:0.11
Consensus pattern (18 bp):
AAAAAGAAATTGAAAAAG
Found at i:67652812 original size:30 final size:30
Alignment explanation
Indices: 67652778--67652875 Score: 92
Period size: 30 Copynumber: 3.3 Consensus size: 30
67652768 AGCTCACTCC
67652778 TAGCTCATATTCAGCTCACGAGCTAAACCT
1 TAGCTCATATTCAGCTCACGAGCTAAACCT
* * * * *
67652808 TAGCTCAGT-TTCAGCTTAGGAGTTTAATCT
1 TAGCTCA-TATTCAGCTCACGAGCTAAACCT
* * *
67652838 CAGCTCA-ACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCATA-TTCAGCTCACGAGCTAAACCT
67652868 TAGCTCAT
1 TAGCTCAT
67652876 TTTAGTTTAA
Statistics
Matches: 51, Mismatches: 13, Indels: 7
0.72 0.18 0.10
Matches are distributed among these distances:
30 50 0.98
31 1 0.02
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.31
Consensus pattern (30 bp):
TAGCTCATATTCAGCTCACGAGCTAAACCT
Found at i:67659016 original size:15 final size:14
Alignment explanation
Indices: 67658996--67659043 Score: 69
Period size: 15 Copynumber: 3.3 Consensus size: 14
67658986 CTCATTTTCA
67658996 TCTTTTTCTTTTATT
1 TCTTTTTCTTTT-TT
*
67659011 TCTTTTTCTTTTTC
1 TCTTTTTCTTTTTT
67659025 TCTTATTTCTTTTTT
1 TCTT-TTTCTTTTTT
67659040 TCTT
1 TCTT
67659044 CTCTCAATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
14 5 0.17
15 25 0.83
ACGTcount: A:0.04, C:0.17, G:0.00, T:0.79
Consensus pattern (14 bp):
TCTTTTTCTTTTTT
Found at i:67659020 original size:21 final size:21
Alignment explanation
Indices: 67658996--67659047 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
67658986 CTCATTTTCA
*
67658996 TCTTTTTCTTTTATTTCTTTT
1 TCTTTTTCTCTTATTTCTTTT
67659017 TCTTTTTCTCTTATTTCTTTT
1 TCTTTTTCTCTTATTTCTTTT
*
67659038 T-TTCTTCTCT
1 TCTTTTTCTCT
67659048 CAATTTCATT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 8 0.28
21 21 0.72
ACGTcount: A:0.04, C:0.19, G:0.00, T:0.77
Consensus pattern (21 bp):
TCTTTTTCTCTTATTTCTTTT
Found at i:67659053 original size:21 final size:21
Alignment explanation
Indices: 67659008--67659054 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
67658998 TTTTTCTTTT
* *
67659008 ATTTCTTTTTCTTTTTCTCTT
1 ATTTCTTTTTCTTCTTCTCTA
67659029 ATTTCTTTTT-TTCTTCTCTCA
1 ATTTCTTTTTCTTCTTCTCT-A
67659050 ATTTC
1 ATTTC
67659055 ATTCAAGATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 8 0.35
21 15 0.65
ACGTcount: A:0.09, C:0.21, G:0.00, T:0.70
Consensus pattern (21 bp):
ATTTCTTTTTCTTCTTCTCTA
Found at i:67665333 original size:22 final size:22
Alignment explanation
Indices: 67665303--67665346 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
67665293 TTTGGTATTT
67665303 GGGAATTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
*
67665325 GGGATTTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
67665347 TGGTTCAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.05, G:0.36, T:0.25
Consensus pattern (22 bp):
GGGAATTGGTACGAAATGGTAA
Found at i:67671337 original size:20 final size:20
Alignment explanation
Indices: 67671314--67671359 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
67671304 CCAGCTCGAA
*
67671314 TTAGCTCACATGAGCTTAAT
1 TTAGCTCACATGAGCTCAAT
***
67671334 TTAGCTCGTTTGAGCTCAAT
1 TTAGCTCACATGAGCTCAAT
67671354 TTAGCT
1 TTAGCT
67671360 TACTTTAGCT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.24, C:0.20, G:0.17, T:0.39
Consensus pattern (20 bp):
TTAGCTCACATGAGCTCAAT
Found at i:67671341 original size:30 final size:30
Alignment explanation
Indices: 67671306--67671379 Score: 80
Period size: 30 Copynumber: 2.5 Consensus size: 30
67671296 AGTTTTTCCC
67671306 AGCTCGAATT-AGCTCACA-TGAGCTTAATTT
1 AGCTCG-ATTGAGCTCA-ATTGAGCTTAATTT
* * *
67671336 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCGATTGAGCTCAATTGAGCTTAATTT
*
67671366 AGCTCGTTTGAGCT
1 AGCTCGATTGAGCT
67671380 TGGCTTAAGT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
29 3 0.08
30 36 0.92
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.38
Consensus pattern (30 bp):
AGCTCGATTGAGCTCAATTGAGCTTAATTT
Found at i:67673001 original size:9 final size:10
Alignment explanation
Indices: 67672980--67673013 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
67672970 AAAAGAGAAG
67672980 AAATTCAAAA
1 AAATTCAAAA
67672990 AAATTCAAAA
1 AAATTCAAAA
*
67673000 AAAATCGAAAA
1 AAATTC-AAAA
67673011 AAA
1 AAA
67673014 AGAAAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 15 0.68
11 7 0.32
ACGTcount: A:0.74, C:0.09, G:0.03, T:0.15
Consensus pattern (10 bp):
AAATTCAAAA
Found at i:67674132 original size:12 final size:12
Alignment explanation
Indices: 67674062--67674161 Score: 50
Period size: 12 Copynumber: 8.6 Consensus size: 12
67674052 AGAAAAGGAG
*
67674062 AAAGAGATTGAA
1 AAAGAAATTGAA
*
67674074 AAAGAAATCGAA
1 AAAGAAATTGAA
** **
67674086 AAAGTGAGAGAA
1 AAAGAAATTGAA
*
67674098 AAAGAAAATGAAGA
1 AAAGAAATTG-A-A
*
67674112 AAATAAAATTGAA
1 AAA-GAAATTGAA
67674125 AAAGAAATTG--
1 AAAGAAATTGAA
67674135 --AG-AA-TGAA
1 AAAGAAATTGAA
*
67674143 AAAAAAATTGAA
1 AAAGAAATTGAA
67674155 AAAGAAA
1 AAAGAAA
67674162 AAGCGAAAAA
Statistics
Matches: 64, Mismatches: 15, Indels: 18
0.66 0.15 0.19
Matches are distributed among these distances:
6 2 0.03
7 2 0.03
8 2 0.03
10 1 0.02
11 2 0.03
12 40 0.62
13 5 0.08
14 5 0.08
15 5 0.08
ACGTcount: A:0.67, C:0.01, G:0.19, T:0.13
Consensus pattern (12 bp):
AAAGAAATTGAA
Found at i:67674142 original size:18 final size:18
Alignment explanation
Indices: 67674116--67674164 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
67674106 TGAAGAAAAT
67674116 AAAATTGAAAAAGAAATTG
1 AAAA-TGAAAAAGAAATTG
* *
67674135 AGAATGAAAAAAAAATTG
1 AAAATGAAAAAGAAATTG
*
67674153 AAAAAGAAAAAG
1 AAAATGAAAAAG
67674165 CGAAAAAAGA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
18 22 0.88
19 3 0.12
ACGTcount: A:0.69, C:0.00, G:0.16, T:0.14
Consensus pattern (18 bp):
AAAATGAAAAAGAAATTG
Found at i:67674150 original size:30 final size:27
Alignment explanation
Indices: 67674095--67674182 Score: 97
Period size: 30 Copynumber: 3.1 Consensus size: 27
67674085 AAAAGTGAGA
*
67674095 GAAAAAGAAAATGAAGAAAATAAAATT
1 GAAAAAGAAAATGAAGAAAAAAAAATT
*
67674122 GAAAAAGAAATTGAGAATGAAAAAAAAATT
1 GAAAAAGAAAAT--GAA-GAAAAAAAAATT
* *
67674152 GAAAAAGAAAAAG-CGAAAAAAGAAATT
1 GAAAAAGAAAATGAAGAAAAAA-AAATT
67674179 GAAA
1 GAAA
67674183 GAGAGCTTGA
Statistics
Matches: 52, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
26 7 0.13
27 20 0.38
28 1 0.02
29 3 0.06
30 21 0.40
ACGTcount: A:0.69, C:0.01, G:0.17, T:0.12
Consensus pattern (27 bp):
GAAAAAGAAAATGAAGAAAAAAAAATT
Found at i:67674216 original size:33 final size:33
Alignment explanation
Indices: 67674179--67674241 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
67674169 AAAAGAAATT
67674179 GAAAGAGAG-CT-TGAAAAGAAATCAAGTGAAAAA
1 GAAAGAGAGTCTAT-AAAAGAAA-CAAGTGAAAAA
*
67674212 GAAAGAGAGTCTATAAAAGAAACGAGTGAA
1 GAAAGAGAGTCTATAAAAGAAACAAGTGAA
67674242 GTGAGTAATC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
33 16 0.59
34 10 0.37
35 1 0.04
ACGTcount: A:0.56, C:0.06, G:0.25, T:0.13
Consensus pattern (33 bp):
GAAAGAGAGTCTATAAAAGAAACAAGTGAAAAA
Found at i:67676041 original size:20 final size:20
Alignment explanation
Indices: 67676018--67676071 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
67676008 AGTTTTTCCC
*
67676018 AGCTCAAATTAGCTCACATG
1 AGCTCAATTTAGCTCACATG
* ***
67676038 AGCTTAATTTAGCTCGTTTG
1 AGCTCAATTTAGCTCACATG
67676058 AGCTCAATTTAGCT
1 AGCTCAATTTAGCT
67676072 TACTTTAGCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (20 bp):
AGCTCAATTTAGCTCACATG
Found at i:67676062 original size:30 final size:30
Alignment explanation
Indices: 67676028--67676091 Score: 94
Period size: 30 Copynumber: 2.1 Consensus size: 30
67676018 AGCTCAAATT
67676028 AGCTCACA-TGAGCTTAATTTAGCTCGTTTG
1 AGCTCA-ATTGAGCTTAATTTAGCTCGTTTG
* *
67676058 AGCTCAATTTAGCTTACTTTAGCTCGTTTG
1 AGCTCAATTGAGCTTAATTTAGCTCGTTTG
67676088 AGCT
1 AGCT
67676092 TGGCTTAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
29 1 0.03
30 30 0.97
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (30 bp):
AGCTCAATTGAGCTTAATTTAGCTCGTTTG
Found at i:67676081 original size:20 final size:20
Alignment explanation
Indices: 67676018--67676082 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
67676008 AGTTTTTCCC
* * * *
67676018 AGCTCAAATTAGCTCACATG
1 AGCTCAATTTAGCTTACTTT
*
67676038 AGCTTAATTTAGC-T-CGTTT
1 AGCTCAATTTAGCTTAC-TTT
67676057 GAGCTCAATTTAGCTTACTTT
1 -AGCTCAATTTAGCTTACTTT
67676078 AGCTC
1 AGCTC
67676083 GTTTGAGCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 28 0.80
21 4 0.11
22 1 0.03
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (20 bp):
AGCTCAATTTAGCTTACTTT
Found at i:67677649 original size:12 final size:12
Alignment explanation
Indices: 67677634--67677673 Score: 66
Period size: 12 Copynumber: 3.5 Consensus size: 12
67677624 TTTCAAAATA
67677634 TTTTTTTT--AT
1 TTTTTTTTCGAT
67677644 TTTTTTTTCGAT
1 TTTTTTTTCGAT
67677656 TTTTTTTTCGAT
1 TTTTTTTTCGAT
67677668 TTTTTT
1 TTTTTT
67677674 GAATCTACAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 8 0.29
12 20 0.71
ACGTcount: A:0.07, C:0.05, G:0.05, T:0.82
Consensus pattern (12 bp):
TTTTTTTTCGAT
Found at i:67679888 original size:21 final size:21
Alignment explanation
Indices: 67679839--67679905 Score: 71
Period size: 21 Copynumber: 3.1 Consensus size: 21
67679829 CCTCTTTGAA
* * *
67679839 CCATAACCAATTCGTACCAAATA
1 CCAT-ACCATTTCATACC-AATT
*
67679862 CCATACTATTTCATACCAATT
1 CCATACCATTTCATACCAATT
*
67679883 CCATACCATTTCGTACCAATT
1 CCATACCATTTCATACCAATT
67679904 CC
1 CC
67679906 CAAATACCAA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
21 24 0.63
22 10 0.26
23 4 0.11
ACGTcount: A:0.34, C:0.33, G:0.03, T:0.30
Consensus pattern (21 bp):
CCATACCATTTCATACCAATT
Found at i:67684054 original size:30 final size:31
Alignment explanation
Indices: 67684020--67684116 Score: 101
Period size: 30 Copynumber: 3.2 Consensus size: 31
67684010 AGCTCACTCC
*
67684020 TAGCTC-ACTTTCAACTCACGAGCTAAACCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
* * * * *
67684050 TAGCTCAAC-TTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
* *
67684080 CAGCTCAACTTT-AGCTCACGAGCTAAAGCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
67684110 TAGCTCA
1 TAGCTCA
67684117 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
30 47 0.92
31 4 0.08
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (31 bp):
TAGCTCAACTTTCAGCTCACGAGCTAAACCT
Found at i:67685005 original size:22 final size:20
Alignment explanation
Indices: 67684973--67685021 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 20
67684963 GCCGAATTTA
67684973 TGAACTATTTTAATACATTAGTG
1 TGAAC-ATTTTAAT-CATT-GTG
* *
67684996 TGAACATTTTTATTATTGTG
1 TGAACATTTTAATCATTGTG
67685016 TGAACA
1 TGAACA
67685022 CCTAGATGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 9 0.38
21 3 0.12
22 7 0.29
23 5 0.21
ACGTcount: A:0.33, C:0.08, G:0.14, T:0.45
Consensus pattern (20 bp):
TGAACATTTTAATCATTGTG
Found at i:67690513 original size:21 final size:21
Alignment explanation
Indices: 67690487--67690549 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
67690477 TTGGTATTTG
67690487 GGAATTGGTACGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
*
67690508 GGAATTGGTATGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
* *
67690529 GGTATTTGGTACGAATTGGTA
1 GG-AATTGGTACGAAATGGTA
67690550 ATGGTTCAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 22 0.59
22 15 0.41
ACGTcount: A:0.30, C:0.03, G:0.33, T:0.33
Consensus pattern (21 bp):
GGAATTGGTACGAAATGGTAT
Found at i:67697913 original size:20 final size:19
Alignment explanation
Indices: 67697873--67697933 Score: 63
Period size: 20 Copynumber: 3.1 Consensus size: 19
67697863 ACCAATAAAA
67697873 TAAATGAGCT-GAATTGTAGC
1 TAAATGAGCTCG-ATTG-AGC
67697893 TAAATTGAGCTCGATTGAGC
1 TAAA-TGAGCTCGATTGAGC
67697913 TGAAATGAGCTC-ATTTGAGC
1 T-AAATGAGCTCGA-TTGAGC
67697933 T
1 T
67697934 GGTCGGAGTT
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
19 1 0.03
20 22 0.59
21 13 0.35
22 1 0.03
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.31
Consensus pattern (19 bp):
TAAATGAGCTCGATTGAGC
Found at i:67699107 original size:14 final size:14
Alignment explanation
Indices: 67699065--67699109 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
67699055 TTAAAGAGGC
67699065 AACTCATTAAATTA
1 AACTCATTAAATTA
* *
67699079 AATTCATCAAA-TA
1 AACTCATTAAATTA
*
67699092 AACTCATTTAATTA
1 AACTCATTAAATTA
67699106 AACT
1 AACT
67699110 AAGATGAGTT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
13 10 0.40
14 15 0.60
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.36
Consensus pattern (14 bp):
AACTCATTAAATTA
Found at i:67701632 original size:13 final size:11
Alignment explanation
Indices: 67701587--67701627 Score: 73
Period size: 11 Copynumber: 3.7 Consensus size: 11
67701577 TTGTAGATTC
*
67701587 AAAAAAAATCG
1 AAAAAAAATTG
67701598 AAAAAAAATTG
1 AAAAAAAATTG
67701609 AAAAAAAATTG
1 AAAAAAAATTG
67701620 AAAAAAAA
1 AAAAAAAA
67701628 AATTGCATAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.12
Consensus pattern (11 bp):
AAAAAAAATTG
Found at i:67710802 original size:20 final size:20
Alignment explanation
Indices: 67710757--67710802 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
67710747 GCTCGTTTCT
*
67710757 AGCTCACTCGAGCTCAAGTC
1 AGCTCACTCAAGCTCAAGTC
* *
67710777 AACTCACTCAAGCTCAATTC
1 AGCTCACTCAAGCTCAAGTC
67710797 AGCTCA
1 AGCTCA
67710803 ATCTTAACCC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.30, C:0.35, G:0.13, T:0.22
Consensus pattern (20 bp):
AGCTCACTCAAGCTCAAGTC
Found at i:67716167 original size:21 final size:19
Alignment explanation
Indices: 67716139--67716179 Score: 55
Period size: 21 Copynumber: 2.1 Consensus size: 19
67716129 AACTCCGACC
*
67716139 AGCTCAATTGAGCTCAATTT
1 AGCTCAATTCAGCTC-ATTT
67716159 AGCTACAATTCAGCTCATTT
1 AGCT-CAATTCAGCTCATTT
67716179 A
1 A
67716180 TTTTATTGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.34
Consensus pattern (19 bp):
AGCTCAATTCAGCTCATTT
Found at i:67724717 original size:20 final size:20
Alignment explanation
Indices: 67724671--67724717 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
67724661 AGCTCGTTTC
*
67724671 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* *
67724691 CAACTCACTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
67724711 CAGCTCA
1 CAGCTCA
67724718 ATCTTAACCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.36, G:0.13, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Done.