Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 207 of 356
Found at i:67732583 original size:10 final size:10
Alignment explanation
Indices: 67732570--67732615 Score: 58
Period size: 10 Copynumber: 4.5 Consensus size: 10
67732560 AGCTCACTTG
*
67732570 AGCTCGTTTT
1 AGCTCGTTTC
67732580 AGCTCGTTTC
1 AGCTCGTTTC
67732590 AGCTCGAATTT-
1 AGCTCG--TTTC
67732601 AGCTCGTTTC
1 AGCTCGTTTC
67732611 AGCTC
1 AGCTC
67732616 ATTCCTTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
9 3 0.09
10 20 0.62
11 6 0.19
12 3 0.09
ACGTcount: A:0.15, C:0.26, G:0.20, T:0.39
Consensus pattern (10 bp):
AGCTCGTTTC
Found at i:67732850 original size:13 final size:13
Alignment explanation
Indices: 67732832--67732860 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
67732822 AATAGTTGTG
67732832 TGTTATTTAATTA
1 TGTTATTTAATTA
67732845 TGTTATTTAATTA
1 TGTTATTTAATTA
67732858 TGT
1 TGT
67732861 AGGTTAGCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.00, G:0.10, T:0.62
Consensus pattern (13 bp):
TGTTATTTAATTA
Found at i:67734222 original size:30 final size:30
Alignment explanation
Indices: 67734186--67734282 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
67734176 AACTCACTCC
67734186 TAGCTCATA-TTTAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTTAGCTCACGAGCTAAACCT
* * * * * *
67734216 TAGCTCAACTTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
* *
67734246 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
67734276 TAGCTCA
1 TAGCTCA
67734283 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAACCT
Found at i:67735984 original size:12 final size:12
Alignment explanation
Indices: 67735967--67735996 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
67735957 AAGAGGAAAT
67735967 TTGAAAAAAAAA
1 TTGAAAAAAAAA
67735979 TTGAAAAAAAAA
1 TTGAAAAAAAAA
*
67735991 TCGAAA
1 TTGAAA
67735997 TTTTTTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.70, C:0.03, G:0.10, T:0.17
Consensus pattern (12 bp):
TTGAAAAAAAAA
Found at i:67737505 original size:13 final size:13
Alignment explanation
Indices: 67737487--67737511 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67737477 TGGTCATCAT
67737487 GGTGTGAACACAA
1 GGTGTGAACACAA
67737500 GGTGTGAACACA
1 GGTGTGAACACA
67737512 TGATCAATAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.32, T:0.16
Consensus pattern (13 bp):
GGTGTGAACACAA
Found at i:67739861 original size:39 final size:40
Alignment explanation
Indices: 67739710--67739879 Score: 198
Period size: 40 Copynumber: 4.3 Consensus size: 40
67739700 GGACTAAGAT
* * *
67739710 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * *
67739750 CTGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
** *
67739790 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * * *
67739830 CCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
67739869 CCGAAGGCATT
1 CCGAAGGCATT
67739880 TGAACGAGGA
Statistics
Matches: 110, Mismatches: 19, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
39 32 0.29
40 78 0.71
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:67739899 original size:79 final size:80
Alignment explanation
Indices: 67739732--67739914 Score: 199
Period size: 79 Copynumber: 2.3 Consensus size: 80
67739722 GTGCGAGATA
* * * * *
67739732 CTAAATCCGGGTTAAGTCCTGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
67739797 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * * *
67739812 TTAAATCCGGGTTACGTCCCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
67739876 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
67739891 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
67739915 TACGTGATTT
Statistics
Matches: 84, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
78 14 0.17
79 47 0.56
80 23 0.27
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:67741742 original size:21 final size:21
Alignment explanation
Indices: 67741712--67741772 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 21
67741702 AAGAGAAAAC
*
67741712 AAAGAAAAGAAAAGAAAAAGGA
1 AAAG-AAAGAAAAGAAAAAGAA
* *
67741734 AAAGCAAGAGAAGAAAAAGAA
1 AAAGAAAGAAAAGAAAAAGAA
*
67741755 AAAGAAATAAAAAGAAAA
1 AAAGAAA-GAAAAGAAAA
67741773 GAGAGGCAAG
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
21 20 0.62
22 12 0.38
ACGTcount: A:0.77, C:0.02, G:0.20, T:0.02
Consensus pattern (21 bp):
AAAGAAAGAAAAGAAAAAGAA
Found at i:67741753 original size:37 final size:36
Alignment explanation
Indices: 67741702--67741773 Score: 94
Period size: 37 Copynumber: 2.0 Consensus size: 36
67741692 CATTCTTGTA
67741702 AAGAGAAAACAAAG-AAAAGAAAAGAAAAAGGAAAAGC
1 AAGAGAAAACAAAGAAAAAG-AAAGAAAAA-GAAAAGC
*
67741739 AAGAGAAGAA-AAAGAAAAAGAAATAAAAAGAAAAG
1 AAGAGAA-AACAAAGAAAAAGAAAGAAAAAGAAAAG
67741774 AGAGGCAAGA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
36 6 0.19
37 19 0.59
38 7 0.22
ACGTcount: A:0.75, C:0.03, G:0.21, T:0.01
Consensus pattern (36 bp):
AAGAGAAAACAAAGAAAAAGAAAGAAAAAGAAAAGC
Found at i:67741761 original size:26 final size:25
Alignment explanation
Indices: 67741705--67741774 Score: 79
Period size: 27 Copynumber: 2.7 Consensus size: 25
67741695 TCTTGTAAAG
67741705 AGAAAACAAAGAAAAGAAAAGAAAA
1 AGAAAACAAAGAAAAGAAAAGAAAA
*
67741730 AGGAAAAGC-AAGAGAAGAAAAAGAAAA
1 A-GAAAA-CAAAGAAAAG-AAAAGAAAA
*
67741757 AGAAATAAAAAGAAAAGA
1 AGAAA-ACAAAGAAAAGA
67741775 GAGGCAAGAG
Statistics
Matches: 37, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
25 1 0.03
26 17 0.46
27 19 0.51
ACGTcount: A:0.76, C:0.03, G:0.20, T:0.01
Consensus pattern (25 bp):
AGAAAACAAAGAAAAGAAAAGAAAA
Found at i:67741772 original size:6 final size:6
Alignment explanation
Indices: 67741712--67741761 Score: 50
Period size: 6 Copynumber: 8.2 Consensus size: 6
67741702 AAGAGAAAAC
*
67741712 AAAG-A AAAG-A AAAGAA AAAGGA AAAGCAA GAGAAGAA AAAGAA AAAGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAG-AA -A-AAGAA AAAGAA AAAGAA
67741761 A
1 A
67741762 TAAAAAGAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
5 9 0.23
6 22 0.56
7 2 0.05
8 3 0.08
9 3 0.08
ACGTcount: A:0.76, C:0.02, G:0.22, T:0.00
Consensus pattern (6 bp):
AAAGAA
Found at i:67741854 original size:11 final size:12
Alignment explanation
Indices: 67741822--67741852 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
67741812 TTGAGAGAAC
67741822 TTGAAAAAGCCT
1 TTGAAAAAGCCT
67741834 TTGAAAAAGCCT
1 TTGAAAAAGCCT
67741846 TTGAAAA
1 TTGAAAA
67741853 GCAAAAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.26
Consensus pattern (12 bp):
TTGAAAAAGCCT
Found at i:67744065 original size:30 final size:30
Alignment explanation
Indices: 67744031--67744127 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
67744021 AGCTCACTCC
67744031 TAGCTCATA-TTTAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTTAGCTCACGAGCTAAACCT
* * * * * *
67744061 TAGCTCAACTTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
* *
67744091 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
67744121 TAGCTCA
1 TAGCTCA
67744128 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAACCT
Found at i:67753693 original size:24 final size:25
Alignment explanation
Indices: 67753640--67753693 Score: 60
Period size: 24 Copynumber: 2.2 Consensus size: 25
67753630 AACAAATTCT
* *
67753640 TTTTTTCATTTTCATCACTCGTTTC
1 TTTTTTCATTTTAATCACTCGTCTC
67753665 -TTTTTC-TTTTGAATCACTC-TCTC
1 TTTTTTCATTTT-AATCACTCGTCTC
67753688 TTTTTT
1 TTTTTT
67753694 TATCACTCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
23 7 0.28
24 18 0.72
ACGTcount: A:0.11, C:0.22, G:0.04, T:0.63
Consensus pattern (25 bp):
TTTTTTCATTTTAATCACTCGTCTC
Found at i:67755966 original size:12 final size:13
Alignment explanation
Indices: 67755943--67755968 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
67755933 CTAGACCGTA
67755943 TGCAATTTTTTTT
1 TGCAATTTTTTTT
67755956 TGCAATTTTTTTT
1 TGCAATTTTTTTT
67755969 CCTTCTTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.08, G:0.08, T:0.69
Consensus pattern (13 bp):
TGCAATTTTTTTT
Found at i:67762171 original size:14 final size:14
Alignment explanation
Indices: 67762152--67762182 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
67762142 CTATTTGAAC
67762152 CTTTCTTAACCTTT
1 CTTTCTTAACCTTT
*
67762166 CTTTCTTAGCCTTT
1 CTTTCTTAACCTTT
67762180 CTT
1 CTT
67762183 CAACTATCCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.10, C:0.29, G:0.03, T:0.58
Consensus pattern (14 bp):
CTTTCTTAACCTTT
Found at i:67765546 original size:30 final size:30
Alignment explanation
Indices: 67765512--67765608 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
67765502 AGCTCACTCC
67765512 TAGCTCATA-TTCAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTCAGCTCACGAGCTAAACCT
* * * * *
67765542 TAGCTCAACTTCAGCTTAGGAGTTTAATCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
* * *
67765572 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
67765602 TAGCTCA
1 TAGCTCA
67765609 TTTTAGTTTA
Statistics
Matches: 53, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
29 1 0.02
30 52 0.98
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTCAGCTCACGAGCTAAACCT
Found at i:67767298 original size:12 final size:12
Alignment explanation
Indices: 67767279--67767324 Score: 74
Period size: 12 Copynumber: 3.8 Consensus size: 12
67767269 GTTATACAAG
67767279 TCAAAAAAAATT
1 TCAAAAAAAATT
* *
67767291 TGAAAAAAAAAT
1 TCAAAAAAAATT
67767303 TCAAAAAAAATT
1 TCAAAAAAAATT
67767315 TCAAAAAAAA
1 TCAAAAAAAA
67767325 ATCTAAAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.72, C:0.07, G:0.02, T:0.20
Consensus pattern (12 bp):
TCAAAAAAAATT
Found at i:67767306 original size:24 final size:23
Alignment explanation
Indices: 67767279--67767335 Score: 87
Period size: 24 Copynumber: 2.4 Consensus size: 23
67767269 GTTATACAAG
*
67767279 TCAAAAAAAATTTGAAAAAAAAA
1 TCAAAAAAAATTTCAAAAAAAAA
67767302 TTCAAAAAAAATTTCAAAAAAAAA
1 -TCAAAAAAAATTTCAAAAAAAAA
*
67767326 TCTAAAAAAA
1 TCAAAAAAAA
67767336 GTGTTTAATG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
23 9 0.29
24 22 0.71
ACGTcount: A:0.72, C:0.07, G:0.02, T:0.19
Consensus pattern (23 bp):
TCAAAAAAAATTTCAAAAAAAAA
Found at i:67767332 original size:12 final size:13
Alignment explanation
Indices: 67767281--67767335 Score: 71
Period size: 13 Copynumber: 4.5 Consensus size: 13
67767271 TATACAAGTC
*
67767281 AAAAAAAATTTGA
1 AAAAAAAATTTCA
67767294 AAAAAAAA-TTC-
1 AAAAAAAATTTCA
67767305 AAAAAAAATTTCA
1 AAAAAAAATTTCA
*
67767318 AAAAAAAATCT-A
1 AAAAAAAATTTCA
67767330 AAAAAA
1 AAAAAA
67767336 GTGTTTAATG
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
11 8 0.21
12 12 0.32
13 18 0.47
ACGTcount: A:0.75, C:0.05, G:0.02, T:0.18
Consensus pattern (13 bp):
AAAAAAAATTTCA
Found at i:67768268 original size:6 final size:5
Alignment explanation
Indices: 67768244--67768300 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
67768234 TAAAGAGAAT
*
67768244 AAAGA AAAGA AAAGAA AAAGCA AAAGA AGA-A AAAGAA AAAGA AATA-A
1 AAAGA AAAGA AAAG-A AAAG-A AAAGA AAAGA AAAG-A AAAGA AA-AGA
67768291 AAAGA AAAGA
1 AAAGA AAAGA
67768301 GAGGCAAGAG
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
4 4 0.09
5 24 0.55
6 16 0.36
ACGTcount: A:0.79, C:0.02, G:0.18, T:0.02
Consensus pattern (5 bp):
AAAGA
Found at i:67768275 original size:15 final size:14
Alignment explanation
Indices: 67768235--67768300 Score: 62
Period size: 15 Copynumber: 4.4 Consensus size: 14
67768225 ACATTCTTGT
67768235 AAAG-AGAATAAAGA
1 AAAGAAGAA-AAAGA
67768249 AAAGAAAAGAAAAAGCA
1 AAAG--AAGAAAAAG-A
67768266 AAAGAAGAAAAAGAA
1 AAAGAAGAAAAAG-A
*
67768281 AAAGAAATAAAAAGA
1 AAAG-AAGAAAAAGA
67768296 AAAGA
1 AAAGA
67768301 GAGGCAAGAG
Statistics
Matches: 45, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
14 5 0.11
15 19 0.42
16 12 0.27
17 9 0.20
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.03
Consensus pattern (14 bp):
AAAGAAGAAAAAGA
Found at i:67768279 original size:31 final size:31
Alignment explanation
Indices: 67768235--67768300 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
67768225 ACATTCTTGT
67768235 AAAG-AGAATAAAG-AAAAGAAAAGAAAAAGCA
1 AAAGAAGAATAAAGAAAAAG-AAAGAAAAAG-A
*
67768266 AAAGAAGAA-AAAGAAAAAGAAATAAAAAGA
1 AAAGAAGAATAAAGAAAAAGAAAGAAAAAGA
67768296 AAAGA
1 AAAGA
67768301 GAGGCAAGAG
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
30 6 0.19
31 17 0.53
32 9 0.28
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.03
Consensus pattern (31 bp):
AAAGAAGAATAAAGAAAAAGAAAGAAAAAGA
Found at i:67768293 original size:25 final size:25
Alignment explanation
Indices: 67768248--67768296 Score: 64
Period size: 27 Copynumber: 1.9 Consensus size: 25
67768238 GAGAATAAAG
67768248 AAAAGAAAAGAAAAAGCAAAAGAAGA
1 AAAAGAAAAGAAAAA-CAAAAGAAGA
*
67768274 AAAAGAAAAAGAAATA-AAAAGAA
1 AAAAG-AAAAGAAAAACAAAAGAA
67768297 AAGAGAGGCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 7 0.33
26 5 0.24
27 9 0.43
ACGTcount: A:0.80, C:0.02, G:0.16, T:0.02
Consensus pattern (25 bp):
AAAAGAAAAGAAAAACAAAAGAAGA
Found at i:67768376 original size:12 final size:12
Alignment explanation
Indices: 67768368--67768392 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
67768358 TTTGAAAAGC
67768368 AAAAAGAAAATG
1 AAAAAGAAAATG
67768380 AAAAAGAAAATG
1 AAAAAGAAAATG
67768392 A
1 A
67768393 GATTGAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (12 bp):
AAAAAGAAAATG
Found at i:67768389 original size:18 final size:18
Alignment explanation
Indices: 67768362--67768417 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
67768352 AAAGCCTTTG
67768362 AAAAGCAAAAAGAAAATGA
1 AAAAG-AAAAAGAAAATGA
* * *
67768381 AAAAGAAAATGAGATTGA
1 AAAAGAAAAAGAAAATGA
* *
67768399 AAAAGAGAACGAAAA-GA
1 AAAAGAAAAAGAAAATGA
67768416 AA
1 AA
67768418 TTTGAGAGTG
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 4 0.13
18 21 0.70
19 5 0.17
ACGTcount: A:0.70, C:0.04, G:0.20, T:0.07
Consensus pattern (18 bp):
AAAAGAAAAAGAAAATGA
Found at i:67768402 original size:30 final size:31
Alignment explanation
Indices: 67768368--67768449 Score: 105
Period size: 30 Copynumber: 2.7 Consensus size: 31
67768358 TTTGAAAAGC
*
67768368 AAAAAGAAAATGAAAAAGAAA-ATGAGATTG
1 AAAAAGAAAATGAAAAAGAAATATGAGAGTG
* * *
67768398 AAAAAGAGAACG-AAAAGAAATTTGAGAGTG
1 AAAAAGAAAATGAAAAAGAAATATGAGAGTG
*
67768428 AAAAAGAAGATGAAAAAGAAAT
1 AAAAAGAAAATGAAAAAGAAAT
67768450 TGAAACAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
29 8 0.19
30 26 0.60
31 9 0.21
ACGTcount: A:0.65, C:0.01, G:0.22, T:0.12
Consensus pattern (31 bp):
AAAAAGAAAATGAAAAAGAAATATGAGAGTG
Found at i:67771295 original size:12 final size:12
Alignment explanation
Indices: 67771280--67771304 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
67771270 AAAAGAAGGA
67771280 AAAAAAAATTGC
1 AAAAAAAATTGC
67771292 AAAAAAAATTGC
1 AAAAAAAATTGC
67771304 A
1 A
67771305 TACGGTCTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.08, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAAAAAATTGC
Found at i:67783251 original size:39 final size:40
Alignment explanation
Indices: 67783195--67783362 Score: 216
Period size: 39 Copynumber: 4.3 Consensus size: 40
67783185 GGACTAAGAT
* * *
67783195 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* *
67783235 CCG-AGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
**
67783274 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTT-AGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * *
67783313 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
67783352 CCGAAGGCATT
1 CCGAAGGCATT
67783363 TGAACGAGGA
Statistics
Matches: 113, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
38 18 0.16
39 63 0.56
40 32 0.28
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:67783382 original size:78 final size:80
Alignment explanation
Indices: 67783217--67783397 Score: 217
Period size: 78 Copynumber: 2.3 Consensus size: 80
67783207 GTGCGAGATA
* * *
67783217 CTAAATCCGGGTTAAGTCCCG-AGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
67783281 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * *
67783296 TTAAATCCGGGTT-AGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
67783359 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
67783374 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
67783398 TACGTGATTT
Statistics
Matches: 86, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
77 4 0.05
78 63 0.73
79 19 0.22
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:67791191 original size:80 final size:79
Alignment explanation
Indices: 67791042--67791264 Score: 223
Period size: 80 Copynumber: 2.8 Consensus size: 79
67791032 TTGAATGCTG
* * * ** * * * * *
67791042 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGCGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAAACCGGGCTAAG-TCCCGAAGGCATT
*
67791106 TGTGCGAGATACTAAA
64 CGTGCGAGATACTAAA
* * * *
67791122 TCCGGGTTAAGTCCCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTC
* **
67791187 GTGCGAGTTGTTAAA
65 GTGCGAGATACTAAA
* * *
67791202 TCCGGGTTACGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
67791265 TGAACGAGGA
Statistics
Matches: 118, Mismatches: 23, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
79 35 0.30
80 79 0.67
81 4 0.03
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGATACTAAA
Found at i:67791246 original size:39 final size:40
Alignment explanation
Indices: 67791095--67791264 Score: 216
Period size: 40 Copynumber: 4.3 Consensus size: 40
67791085 GGACTAAGAT
* * *
67791095 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * *
67791135 CCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
** *
67791175 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * *
67791215 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
67791254 CCGAAGGCATT
1 CCGAAGGCATT
67791265 TGAACGAGGA
Statistics
Matches: 114, Mismatches: 16, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 33 0.29
40 81 0.71
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:67791284 original size:79 final size:80
Alignment explanation
Indices: 67791117--67791299 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
67791107 GTGCGAGATA
* * * *
67791117 CTAAATCCGGGTTAAGTCCCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
67791182 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
67791197 TTAAATCCGGGTTACGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
67791261 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
67791276 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
67791300 TACGTGATTT
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 26 0.30
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:67794949 original size:49 final size:49
Alignment explanation
Indices: 67794871--67795116 Score: 287
Period size: 49 Copynumber: 5.0 Consensus size: 49
67794861 GTAGCCGAAG
* * *
67794871 CTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
* * * *
67794920 TTATCCGGTACACGTAGTAGCCTGCACTTAGTATTACACACGTGACCTAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AA
* * * *
67794970 CCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA
* * * * *
67795020 GTTAT-TAGGTACGCATAGTAGCCTGCACTTATTACTACACATGCGACCAA
1 -CTATCT-GGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
* *
67795070 CAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
67795117 TCACAATAGC
Statistics
Matches: 163, Mismatches: 29, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
49 78 0.48
50 49 0.30
51 36 0.22
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
Found at i:67795099 original size:100 final size:99
Alignment explanation
Indices: 67794873--67795116 Score: 328
Period size: 100 Copynumber: 2.5 Consensus size: 99
67794863 AGCCGAAGCT
* * * * * *
67794873 ATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGT
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGT
* * *
67794938 AGCCTGCACTTAGTATTACACACGTGACCTAACC
66 AGCCTGCACTTAGTACTACACACGCGACCTAACA
* * * *
67794972 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATTAGGTACGCATA
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCAGGTACACATA
* *
67795037 GTAGCCTGCACTTATTACTACACATGCGACC-AACA
64 GTAGCCTGCACTTAGTACTACACACGCGACCTAACA
67795072 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
67795117 TCACAATAGC
Statistics
Matches: 126, Mismatches: 17, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
99 39 0.31
100 48 0.38
101 39 0.31
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (99 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGT
AGCCTGCACTTAGTACTACACACGCGACCTAACA
Found at i:67795587 original size:30 final size:30
Alignment explanation
Indices: 67795552--67795612 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
67795542 TCCTTAAATC
*
67795552 AAACTTTGGCAAAATTACAATTTTTCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * *
67795582 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
67795612 A
1 A
67795613 GGCTCAGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:67797663 original size:16 final size:15
Alignment explanation
Indices: 67797616--67797683 Score: 68
Period size: 15 Copynumber: 4.5 Consensus size: 15
67797606 TCCAAAAAAA
*
67797616 CCAAGATAGAGAAAT
1 CCAAGATAAAGAAAT
* *
67797631 CTAA-A-ACAGAGAAT
1 CCAAGATAAAGA-AAT
67797645 CCAAGAATAAAGAAAT
1 CCAAG-ATAAAGAAAT
67797661 CCAAGATAAAGAAAT
1 CCAAGATAAAGAAAT
*
67797676 CCATGATA
1 CCAAGATA
67797684 CGAGAATCCA
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
13 4 0.09
14 7 0.16
15 20 0.45
16 9 0.20
17 4 0.09
ACGTcount: A:0.56, C:0.15, G:0.15, T:0.15
Consensus pattern (15 bp):
CCAAGATAAAGAAAT
Found at i:67800509 original size:49 final size:48
Alignment explanation
Indices: 67800350--67800526 Score: 200
Period size: 49 Copynumber: 3.7 Consensus size: 48
67800340 CTGGTATGCA
*
67800350 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGG----G
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCAGGTACCG
* * *
67800394 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAAGTTATCAGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AA-TTATCAGGTAC-CG
* ** *
67800445 TAGTAGCCTGCACTTAGTACTACATATGCGACCAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCAGGTAC-CG
* *
67800494 TAGTAGCTTGCACTTAGTACTACACATGTGACC
1 TAGTAGCCTGCACTTAGTACTACACATGCGACC
67800527 TCACAATAGC
Statistics
Matches: 111, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
44 31 0.28
45 2 0.02
46 7 0.06
49 39 0.35
50 2 0.02
51 30 0.27
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (48 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCAGGTACCG
Found at i:67802623 original size:27 final size:27
Alignment explanation
Indices: 67802592--67802654 Score: 85
Period size: 26 Copynumber: 2.4 Consensus size: 27
67802582 AATTTACTAA
67802592 AATACCCCTAAGTATG-AAAATTACCAT
1 AATACCCCTAAG-ATGCAAAATTACCAT
*
67802619 AATACCCCT-AGGTGCAAAATTACCAT
1 AATACCCCTAAGATGCAAAATTACCAT
*
67802645 TATACCCCTA
1 AATACCCCTA
67802655 TGGTTAATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
25 2 0.06
26 21 0.66
27 9 0.28
ACGTcount: A:0.40, C:0.27, G:0.08, T:0.25
Consensus pattern (27 bp):
AATACCCCTAAGATGCAAAATTACCAT
Found at i:67804139 original size:46 final size:46
Alignment explanation
Indices: 67804089--67804261 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
67804079 TGGTTGAGCA
67804089 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
67804135 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
67804180 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
67804228 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
67804262 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 59 0.57
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:67804245 original size:93 final size:93
Alignment explanation
Indices: 67804086--67804256 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
67804076 GGATGGTTGA
* * *
67804086 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
67804151 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
67804179 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
67804244 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
67804257 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:67804522 original size:19 final size:20
Alignment explanation
Indices: 67804485--67804522 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
67804475 ATAAGTTGGT
67804485 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
67804505 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
67804523 TGGTGATACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:67805641 original size:27 final size:27
Alignment explanation
Indices: 67805577--67805678 Score: 125
Period size: 27 Copynumber: 3.7 Consensus size: 27
67805567 GGGCGTTACA
* * *
67805577 GTGGCTTTGCCACAAATATCTGTGTTTG
1 GTGGCTCTGCCAC-AATATCTGTATCTG
*
67805605 GTAGCTCTGCCACAAATATCTGT-TCTG
1 GTGGCTCTGCCAC-AATATCTGTATCTG
67805632 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTATCTG
* *
67805659 GTGACTCTGTCACAATATCT
1 GTGGCTCTGCCACAATATCT
67805679 ATTCTGGCAG
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
26 9 0.13
27 37 0.55
28 21 0.31
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.35
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTATCTG
Found at i:67805667 original size:54 final size:54
Alignment explanation
Indices: 67805577--67805685 Score: 141
Period size: 54 Copynumber: 2.0 Consensus size: 54
67805567 GGGCGTTACA
* * * *
67805577 GTGGCTTTGCCACAAATATCTGTGTTTGGTAGCTCTGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCACAAATATCTGTATCTGGTAGCTCTGCCAC-AATATCTATTCTG
*
67805632 GTGGCTCTGCCAC-AATATCTGTATCTGGT-GACTCTGTCACAATATCTATTCTG
1 GTGGCTCTGCCACAAATATCTGTATCTGGTAG-CTCTGCCACAATATCTATTCTG
67805685 G
1 G
67805686 CAGTCATGCT
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
53 14 0.29
54 22 0.46
55 12 0.25
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (54 bp):
GTGGCTCTGCCACAAATATCTGTATCTGGTAGCTCTGCCACAATATCTATTCTG
Found at i:67810729 original size:33 final size:33
Alignment explanation
Indices: 67810656--67810733 Score: 88
Period size: 33 Copynumber: 2.4 Consensus size: 33
67810646 ATATGTATAC
* *
67810656 ATGTAAGACCA-AAGCTGGGCTATGGCATCCTA
1 ATGTAAGACCATAAGCTGGGCTATGGCATACGA
*
67810688 ATGATAAGACCATAA-CTGGGTTATGGCATTACGA
1 ATG-TAAGACCATAAGCTGGGCTATGGCA-TACGA
*
67810722 GTGTAAGACCAT
1 ATGTAAGACCAT
67810734 GGTAGGGCCA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
32 3 0.08
33 29 0.74
34 7 0.18
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.24
Consensus pattern (33 bp):
ATGTAAGACCATAAGCTGGGCTATGGCATACGA
Found at i:67810778 original size:30 final size:30
Alignment explanation
Indices: 67810722--67810778 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
67810712 GGCATTACGA
* *
67810722 GTGTAAGACCATGGTAGGGCCATGGCAATT
1 GTGTAAGACCATAGTAGGACCATGGCAATT
* *
67810752 GTGTAAGACCATAGTTGGACCGTGGCA
1 GTGTAAGACCATAGTAGGACCATGGCA
67810779 TCAAGAAAAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.26, C:0.18, G:0.33, T:0.23
Consensus pattern (30 bp):
GTGTAAGACCATAGTAGGACCATGGCAATT
Found at i:67811028 original size:24 final size:24
Alignment explanation
Indices: 67811001--67811049 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
67810991 AAAGCCTATG
*
67811001 AACCTATTAGGCTTCATTAAGCTT
1 AACCTATTAAGCTTCATTAAGCTT
67811025 AACCTATTAAGCTTCATTAAGCTT
1 AACCTATTAAGCTTCATTAAGCTT
67811049 A
1 A
67811050 CTTGTGTTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (24 bp):
AACCTATTAAGCTTCATTAAGCTT
Found at i:67813096 original size:18 final size:18
Alignment explanation
Indices: 67813053--67813093 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
67813043 TGGGCTGTGT
67813053 TGGCCCAATGGGCTCTTA
1 TGGCCCAATGGGCTCTTA
67813071 TGGCCCAATGGGCTCTTA
1 TGGCCCAATGGGCTCTTA
67813089 -GGCCC
1 TGGCCC
67813094 CAAACAGATT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 5 0.22
18 18 0.78
ACGTcount: A:0.15, C:0.32, G:0.29, T:0.24
Consensus pattern (18 bp):
TGGCCCAATGGGCTCTTA
Found at i:67813421 original size:27 final size:27
Alignment explanation
Indices: 67813322--67813468 Score: 159
Period size: 27 Copynumber: 5.4 Consensus size: 27
67813312 ACCCCAAAAT
* * * *
67813322 GGGTAAAATGATCGTAGTGCCCCTGCA
1 GGGTAAAATGACCGTAATACCCCTGTA
* * * *
67813349 AGGTAAAATGATCGTAATGCCCTTGTA
1 GGGTAAAATGACCGTAATACCCCTGTA
* *
67813376 GGGTAAAATGACTGTAATACCCCTATA
1 GGGTAAAATGACCGTAATACCCCTGTA
*
67813403 GGGTAAAATGACCGTAATACCGCTGTA
1 GGGTAAAATGACCGTAATACCCCTGTA
* * *
67813430 GGATAAAGTGTCCGTAATACCCCTGTA
1 GGGTAAAATGACCGTAATACCCCTGTA
*
67813457 TGGTAAAATGAC
1 GGGTAAAATGAC
67813469 GATTATGCCC
Statistics
Matches: 99, Mismatches: 21, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
27 99 1.00
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (27 bp):
GGGTAAAATGACCGTAATACCCCTGTA
Found at i:67819332 original size:11 final size:11
Alignment explanation
Indices: 67819316--67819341 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
67819306 TTAGGTTAGG
67819316 TTTTCTTTTCA
1 TTTTCTTTTCA
67819327 TTTTCTTTTCA
1 TTTTCTTTTCA
67819338 TTTT
1 TTTT
67819342 TTATTTTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.08, C:0.15, G:0.00, T:0.77
Consensus pattern (11 bp):
TTTTCTTTTCA
Found at i:67821821 original size:40 final size:39
Alignment explanation
Indices: 67821766--67821988 Score: 275
Period size: 40 Copynumber: 5.6 Consensus size: 39
67821756 CGGATGATAA
* * *
67821766 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TT
* * *
67821806 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TT
* * *
67821846 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TT
* *
67821886 CCGGGCAAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-T
*
67821926 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-T
* *
67821966 CCAGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
67821989 CGAGTAAGTA
Statistics
Matches: 163, Mismatches: 19, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
40 163 1.00
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATT
Found at i:67821979 original size:120 final size:120
Alignment explanation
Indices: 67821766--67821988 Score: 324
Period size: 120 Copynumber: 1.9 Consensus size: 120
67821756 CGGATGATAA
* * *
67821766 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCAAAGTCCCGAAGGCATTTGCGCGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTGG
* *
67821831 TCCGAGTTATTACATCCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTATTACAT
66 TCCGAGTTACTACATCCAGGCTAAGTCCCAAAGGCATTTGTGCGAGTTATTACAT
*
67821886 CCGGGCAAAGTCCCGAAGGCATTTGTGCGAGCT-ACTA-TATCCGGGCTAAGTCCCGAAGGCATT
1 CCGGGCAAAGTCCCGAAGGCATTTGCGCGAG-TGACTAGT-TCCGGGCTAAGTCCCGAAGGCATT
* * * *
67821949 GGTGCGAGTTACTATATCCAGGCTATGTCCCGAAGGCATT
64 GGTCCGAGTTACTACATCCAGGCTAAGTCCCAAAGGCATT
67821989 CGAGTAAGTA
Statistics
Matches: 91, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
119 1 0.01
120 89 0.98
121 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.25
Consensus pattern (120 bp):
CCGGGCAAAGTCCCGAAGGCATTTGCGCGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTGG
TCCGAGTTACTACATCCAGGCTAAGTCCCAAAGGCATTTGTGCGAGTTATTACAT
Found at i:67822004 original size:40 final size:40
Alignment explanation
Indices: 67821769--67822023 Score: 183
Period size: 40 Copynumber: 6.4 Consensus size: 40
67821759 ATGATAACCG
* * * * *
67821769 GGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-TCCG
1 GGCTAAGTCCCGAAGGCATTCGAGCAAGTTACTA-TATCCA
* ** * * * *
67821809 GGCTAAGTCCCGAAGGCATTTGTCCGAGTTATTACATCCG
1 GGCTAAGTCCCGAAGGCATTCGAGCAAGTTACTATATCCA
* * * * * * *
67821849 GGCTAAGTCCCAAAGGCATTTGTGCGAGTTATTACATCCG
1 GGCTAAGTCCCGAAGGCATTCGAGCAAGTTACTATATCCA
* * * * * *
67821889 GGCAAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTCGAGCAAGTTACTATATCCA
* * *
67821929 GGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCCA
1 GGCTAAGTCCCGAAGGCATTCGAGCAAGTTACTATATCCA
* *
67821969 GGCTATGTCCCGAAGGCATTCGAGTAAG-TAGCTATATCCA
1 GGCTAAGTCCCGAAGGCATTCGAGCAAGTTA-CTATATCCA
* *
67822009 -GTTAAATCCCGAAGG
1 GGCTAAGTCCCGAAGG
67822024 TACTTGGCTT
Statistics
Matches: 188, Mismatches: 25, Indels: 5
0.86 0.11 0.02
Matches are distributed among these distances:
39 14 0.07
40 174 0.93
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTCGAGCAAGTTACTATATCCA
Found at i:67822007 original size:80 final size:80
Alignment explanation
Indices: 67821766--67821988 Score: 304
Period size: 80 Copynumber: 2.8 Consensus size: 80
67821756 CGGATGATAA
* * *
67821766 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-TCCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATCCGGGCTAAGTCCCGAAGGCATTT
* * * *
67821830 GTCCGAGTTATTACAT
65 GTGCGAGCTACTATAT
* * * *
67821846 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTATTACATCCGGGCAAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
67821911 TGCGAGCTACTATAT
66 TGCGAGCTACTATAT
* * *
67821926 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCCAGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATT
67821989 CGAGTAAGTA
Statistics
Matches: 124, Mismatches: 18, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
80 124 1.00
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGCTACTATAT
Found at i:67824151 original size:20 final size:20
Alignment explanation
Indices: 67824128--67824180 Score: 72
Period size: 19 Copynumber: 2.7 Consensus size: 20
67824118 TGAATAGTTG
*
67824128 TAAAATTTGATGAAAAATTA
1 TAAAATTTTATGAAAAATTA
* *
67824148 TAAAATTTTA-GGAAAATTC
1 TAAAATTTTATGAAAAATTA
67824167 TAAAATTTTATGAA
1 TAAAATTTTATGAA
67824181 TATATGTGCT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 17 0.61
20 11 0.39
ACGTcount: A:0.51, C:0.02, G:0.09, T:0.38
Consensus pattern (20 bp):
TAAAATTTTATGAAAAATTA
Found at i:67828969 original size:30 final size:30
Alignment explanation
Indices: 67828933--67829000 Score: 136
Period size: 30 Copynumber: 2.3 Consensus size: 30
67828923 CACATGGTTA
67828933 GACACACGGGCGTGTGTCTAGGCCGTGTGT
1 GACACACGGGCGTGTGTCTAGGCCGTGTGT
67828963 GACACACGGGCGTGTGTCTAGGCCGTGTGT
1 GACACACGGGCGTGTGTCTAGGCCGTGTGT
67828993 GACACACG
1 GACACACG
67829001 ATTCCCTCCC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.16, C:0.25, G:0.38, T:0.21
Consensus pattern (30 bp):
GACACACGGGCGTGTGTCTAGGCCGTGTGT
Found at i:67833634 original size:10 final size:10
Alignment explanation
Indices: 67833619--67833648 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
67833609 TGTTGTAGTT
67833619 AAATAAATAA
1 AAATAAATAA
*
67833629 AAATAAAAAA
1 AAATAAATAA
67833639 AAATAAATAA
1 AAATAAATAA
67833649 TAACTAATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (10 bp):
AAATAAATAA
Found at i:67833704 original size:26 final size:26
Alignment explanation
Indices: 67833663--67833716 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
67833653 TAATTATTAT
67833663 TACTAACTAAGAACAAAACATAATAA
1 TACTAACTAAGAACAAAACATAATAA
67833689 TACTAACTAA-AGACAAAACATAATAA
1 TACTAACTAAGA-ACAAAACATAATAA
67833715 TA
1 TA
67833717 ATGTTCCCCT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 26 0.96
ACGTcount: A:0.61, C:0.15, G:0.04, T:0.20
Consensus pattern (26 bp):
TACTAACTAAGAACAAAACATAATAA
Found at i:67836128 original size:39 final size:39
Alignment explanation
Indices: 67836077--67836310 Score: 328
Period size: 39 Copynumber: 6.0 Consensus size: 39
67836067 TGAGGTCCGC
67836077 AGGC-TTTATGCTGGTATTATATCCGGGCTAAGTCCCGA
1 AGGCATTTATGCTGGTATTATATCCGGGCTAAGTCCCGA
* *
67836115 AGGCATTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGA
1 AGGCATTTATGCTGGTATTATATCCGGGCTAAGTCCCGA
* *
67836154 AGGCAGTTATGCTGGTGTTATATCCGGGCTAAGTCCCGA
1 AGGCATTTATGCTGGTATTATATCCGGGCTAAGTCCCGA
* * * *
67836193 AGGCATTTGTGCTGGTGTTTTATCTGGGCTAAGTCCCGA
1 AGGCATTTATGCTGGTATTATATCCGGGCTAAGTCCCGA
* *
67836232 AAGCATTTATGCTGGTATTATATCCGGGCTAAAGTCCCGC
1 AGGCATTTATGCTGGTATTATATCCGGGCT-AAGTCCCGA
*
67836272 AGGC-TTTATGATGGTATTATATCCGGGCTTAAAGTCCCG
1 AGGCATTTATGCTGGTATTATATCCGGGC-T-AAGTCCCG
67836311 CATGCTTTTT
Statistics
Matches: 177, Mismatches: 16, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
38 4 0.02
39 152 0.86
40 21 0.12
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.32
Consensus pattern (39 bp):
AGGCATTTATGCTGGTATTATATCCGGGCTAAGTCCCGA
Found at i:67836466 original size:18 final size:18
Alignment explanation
Indices: 67836443--67836478 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
67836433 AAGTTGGTCA
67836443 GGTATGTATTATATACTT
1 GGTATGTATTATATACTT
67836461 GGTATGTATTATATACTT
1 GGTATGTATTATATACTT
67836479 TTATATGTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.06, G:0.17, T:0.50
Consensus pattern (18 bp):
GGTATGTATTATATACTT
Found at i:67838675 original size:13 final size:13
Alignment explanation
Indices: 67838657--67838683 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
67838647 GATGAAAAGT
67838657 TGAAATGTTTGAA
1 TGAAATGTTTGAA
67838670 TGAAATGTTTGAA
1 TGAAATGTTTGAA
67838683 T
1 T
67838684 CAATGTGTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.22, T:0.41
Consensus pattern (13 bp):
TGAAATGTTTGAA
Found at i:67842270 original size:39 final size:39
Alignment explanation
Indices: 67842219--67842452 Score: 310
Period size: 39 Copynumber: 6.0 Consensus size: 39
67842209 TGTGGTCCGC
*
67842219 AGGC-TTTATGCTGGTATTATATTCGGGCTAAGTCCCGA
1 AGGCATTTATGCTGGTATTATATCCGGGCTAAGTCCCGA
* *
67842257 AGGCATTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGA
1 AGGCATTTATGCTGGTATTATATCCGGGCTAAGTCCCGA
67842296 AGGCATTTATGCTGGTATTATATCCGGGCTAAGTCCCGA
1 AGGCATTTATGCTGGTATTATATCCGGGCTAAGTCCCGA
* ** * *
67842335 AGGCATTTGTGCTGGTGCTATATCCGGGCTAAATCTCGA
1 AGGCATTTATGCTGGTATTATATCCGGGCTAAGTCCCGA
* * *
67842374 AGGCATTTATGTTGGTATTATATCCGGGCTAAAGTCCTGC
1 AGGCATTTATGCTGGTATTATATCCGGGCT-AAGTCCCGA
* *
67842414 AGGC-TTAATGATGGTATTATATCCGGGCTTAAAGTCCCG
1 AGGCATTTATGCTGGTATTATATCCGGGC-T-AAGTCCCG
67842453 CATGCTTTTT
Statistics
Matches: 172, Mismatches: 21, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
38 4 0.02
39 150 0.87
40 18 0.10
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (39 bp):
AGGCATTTATGCTGGTATTATATCCGGGCTAAGTCCCGA
Found at i:67842608 original size:18 final size:18
Alignment explanation
Indices: 67842585--67842620 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
67842575 AAGTTGGTCA
67842585 GGTATGTATTATATACTT
1 GGTATGTATTATATACTT
67842603 GGTATGTATTATATACTT
1 GGTATGTATTATATACTT
67842621 TTATATGTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.06, G:0.17, T:0.50
Consensus pattern (18 bp):
GGTATGTATTATATACTT
Found at i:67851562 original size:5 final size:5
Alignment explanation
Indices: 67851552--67851597 Score: 56
Period size: 5 Copynumber: 8.8 Consensus size: 5
67851542 TCATATTTGC
* *
67851552 TTTTA TTTTA TTATTT TTATTA TTTTA TTTTA TTTTA TTTCA TTTT
1 TTTTA TTTTA TT-TTA TT-TTA TTTTA TTTTA TTTTA TTTTA TTTT
67851598 TTCCCAAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
5 27 0.75
6 9 0.25
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTTA
Found at i:67852315 original size:32 final size:32
Alignment explanation
Indices: 67852265--67852346 Score: 128
Period size: 32 Copynumber: 2.6 Consensus size: 32
67852255 TGGGCATGTG
* * *
67852265 GTGTGGACTACACAGGCAAGGCCAATCTAGGC
1 GTGTGGACCACACGGGCAAGGCCAAACTAGGC
*
67852297 GTGTGGACCACACGGGCAAGGCCAAACTGGGC
1 GTGTGGACCACACGGGCAAGGCCAAACTAGGC
67852329 GTGTGGACCACACGGGCA
1 GTGTGGACCACACGGGCA
67852347 TGTGAGCCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 46 1.00
ACGTcount: A:0.26, C:0.27, G:0.35, T:0.12
Consensus pattern (32 bp):
GTGTGGACCACACGGGCAAGGCCAAACTAGGC
Found at i:67853959 original size:18 final size:18
Alignment explanation
Indices: 67853936--67853971 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
67853926 TTAGCCCCTC
67853936 CGTTAAATTTTATTTGTT
1 CGTTAAATTTTATTTGTT
67853954 CGTTAAATTTTATTTGTT
1 CGTTAAATTTTATTTGTT
67853972 AAATGATGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.06, G:0.11, T:0.61
Consensus pattern (18 bp):
CGTTAAATTTTATTTGTT
Found at i:67854152 original size:14 final size:14
Alignment explanation
Indices: 67854133--67854163 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
67854123 TTATTTTTAA
67854133 AAATAAATAATTCT
1 AAATAAATAATTCT
67854147 AAATAAATAATTCT
1 AAATAAATAATTCT
67854161 AAA
1 AAA
67854164 AATTCAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.32
Consensus pattern (14 bp):
AAATAAATAATTCT
Found at i:67856697 original size:154 final size:155
Alignment explanation
Indices: 67856463--67856776 Score: 524
Period size: 154 Copynumber: 2.0 Consensus size: 155
67856453 TAGTTTTGAC
* * **
67856463 ATTAACCAGAGGCGTTCAATCAATAATTTCTCTAAACTGTTATGTGCATAAATAACAAACTTTTA
1 ATTAACCAGAGGCATTCAATCAATAATTTCTCTAAACTATTATGCACATAAATAACAAACTTTTA
* *
67856528 CAAAAGTTTTTCAAACTCAATCAAT-AAAAGACTGATATATAAACTCATCAATATTATCAAAACT
66 CAAAAGTTTTTCAAACTCAATCAATAAAAAGACTGAGATATAAACTCATCAATATTAGCAAAA-T
67856592 -AATTATCTTAATTGCATGATCTGAA
130 GAATTATCTTAATTGCATGATCTGAA
*
67856617 ATTAACTAGAGGCATTCAATCAATAATTTCTCTAAACTATTATGCACATAAATAACAAACTTTTA
1 ATTAACCAGAGGCATTCAATCAATAATTTCTCTAAACTATTATGCACATAAATAACAAACTTTTA
*
67856682 CAAAAGTTTTTCAAACTCAATCAATAAAAATACTGAGATATAAACTCATCAATATTAGCAAAATG
66 CAAAAGTTTTTCAAACTCAATCAATAAAAAGACTGAGATATAAACTCATCAATATTAGCAAAATG
*
67856747 AATTATCTTAATTGCATGATTTGAA
131 AATTATCTTAATTGCATGATCTGAA
67856772 ATTAA
1 ATTAA
67856777 TTATTTAAAC
Statistics
Matches: 149, Mismatches: 9, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
154 86 0.58
155 63 0.42
ACGTcount: A:0.44, C:0.15, G:0.08, T:0.33
Consensus pattern (155 bp):
ATTAACCAGAGGCATTCAATCAATAATTTCTCTAAACTATTATGCACATAAATAACAAACTTTTA
CAAAAGTTTTTCAAACTCAATCAATAAAAAGACTGAGATATAAACTCATCAATATTAGCAAAATG
AATTATCTTAATTGCATGATCTGAA
Found at i:67859701 original size:22 final size:21
Alignment explanation
Indices: 67859676--67859717 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
67859666 ATTTTAAGGT
*
67859676 TTATGGATTATGGGTTTGGGGA
1 TTATGGATTAAGGG-TTGGGGA
*
67859698 TTATGGTTTAAGGGTTGGGG
1 TTATGGATTAAGGGTTGGGG
67859718 TTTAAGGTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.17, C:0.00, G:0.43, T:0.40
Consensus pattern (21 bp):
TTATGGATTAAGGGTTGGGGA
Found at i:67859767 original size:21 final size:20
Alignment explanation
Indices: 67859705--67859775 Score: 65
Period size: 21 Copynumber: 3.5 Consensus size: 20
67859695 GGATTATGGT
*
67859705 TTAAGGGTT-GGGGTTTAAGG
1 TTAAGGGTTAGGGG-TTAGGG
* *
67859725 TTTAGGAGTTA-TGGTTAGGGG
1 TTAAGG-GTTAGGGGTTA-GGG
67859746 TTAAGGGTTAGGGGTCTAGGG
1 TTAAGGGTTAGGGGT-TAGGG
67859767 TTAAGGGTT
1 TTAAGGGTT
67859776 TATGTTTTAG
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
20 12 0.29
21 27 0.66
22 2 0.05
ACGTcount: A:0.20, C:0.01, G:0.44, T:0.35
Consensus pattern (20 bp):
TTAAGGGTTAGGGGTTAGGG
Found at i:67859786 original size:21 final size:21
Alignment explanation
Indices: 67859762--67859815 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
67859752 GTTAGGGGTC
*
67859762 TAGGGTTAAGGGTTTATGTTT
1 TAGGGTTAAGGGTTTATGATT
* * *
67859783 TAGGATTTATGGTTTATGATT
1 TAGGGTTAAGGGTTTATGATT
67859804 TAGGGATTAAGG
1 TAGGG-TTAAGG
67859816 AATAAGGATT
Statistics
Matches: 25, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
21 21 0.84
22 4 0.16
ACGTcount: A:0.24, C:0.00, G:0.31, T:0.44
Consensus pattern (21 bp):
TAGGGTTAAGGGTTTATGATT
Found at i:67865021 original size:43 final size:42
Alignment explanation
Indices: 67864973--67865136 Score: 150
Period size: 43 Copynumber: 3.9 Consensus size: 42
67864963 AACTATTTTT
* * * *
67864973 TAAAGGTTATATTCTTTAGCGGCGTTTGTGAGAAAAGCGCTGC
1 TAAAGGTCATAGTCTTTAGCAGCGTTTGTGAAAAAAGCGC-GC
* * * * * * *
67865016 TAAAGGTC-TATTATATAGCGGCGTTTTTGGAAAAAGCGGCAC
1 TAAAGGTCATAGTCTTTAGCAGCGTTTGTGAAAAAAGC-GCGC
* * *
67865058 TAAAGATCATGGTCTTTAGCAGCATTTGTGAAAAAAGCGCCGC
1 TAAAGGTCATAGTCTTTAGCAGCGTTTGTGAAAAAAGCG-CGC
* *
67865101 TAAAGGTCATGGTCTTTAGTAGCGTTTGTGAAAAAA
1 TAAAGGTCATAGTCTTTAGCAGCGTTTGTGAAAAAA
67865137 ATGCCGTTAA
Statistics
Matches: 98, Mismatches: 20, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
42 33 0.34
43 65 0.66
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (42 bp):
TAAAGGTCATAGTCTTTAGCAGCGTTTGTGAAAAAAGCGCGC
Found at i:67865152 original size:43 final size:43
Alignment explanation
Indices: 67865057--67865171 Score: 149
Period size: 43 Copynumber: 2.7 Consensus size: 43
67865047 AAAAGCGGCA
* *
67865057 CTAAAGATCATGGTCTTTAGCAGCATTTGTGAAAAAAGCGCCG
1 CTAAAGGTCATGGTCTTTAGCAGCATTTGTGAAAAAAACGCCG
* * *
67865100 CTAAAGGTCATGGTCTTTAGTAGCGTTTGTGAAAAAAATGCCG
1 CTAAAGGTCATGGTCTTTAGCAGCATTTGTGAAAAAAACGCCG
* * * *
67865143 TTAATGGTCATGGTCATTAGCGGCATTTG
1 CTAAAGGTCATGGTCTTTAGCAGCATTTG
67865172 CGGGAAAAGC
Statistics
Matches: 61, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 61 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (43 bp):
CTAAAGGTCATGGTCTTTAGCAGCATTTGTGAAAAAAACGCCG
Found at i:67866653 original size:16 final size:17
Alignment explanation
Indices: 67866622--67866655 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
67866612 CACCAAATTC
*
67866622 ACATCAATCTACACAGA
1 ACATCAAACTACACAGA
67866639 ACATCAAAC-ACACAGA
1 ACATCAAACTACACAGA
67866655 A
1 A
67866656 GTAAGCTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.53, C:0.29, G:0.06, T:0.12
Consensus pattern (17 bp):
ACATCAAACTACACAGA
Found at i:67872559 original size:2 final size:2
Alignment explanation
Indices: 67872554--67872580 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
67872544 TGTATATATA
67872554 TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG T
67872581 AATTGAATGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:67873025 original size:18 final size:20
Alignment explanation
Indices: 67873002--67873047 Score: 78
Period size: 18 Copynumber: 2.4 Consensus size: 20
67872992 TGAAAATGAC
67873002 GTGAAATGGAA-GTGAAA-T
1 GTGAAATGGAATGTGAAATT
67873020 GTGAAATGGAATGTGAAATT
1 GTGAAATGGAATGTGAAATT
67873040 GTGAAATG
1 GTGAAATG
67873048 AGTTGGGAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
18 11 0.42
19 6 0.23
20 9 0.35
ACGTcount: A:0.41, C:0.00, G:0.33, T:0.26
Consensus pattern (20 bp):
GTGAAATGGAATGTGAAATT
Found at i:67880867 original size:17 final size:16
Alignment explanation
Indices: 67880844--67880875 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
67880834 TGTGTAACAC
67880844 CCCAAAAATCCCGAAA
1 CCCAAAAATCCCGAAA
67880860 CCCAAAAATCCCGAAA
1 CCCAAAAATCCCGAAA
67880876 TCCTGAACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.38, G:0.06, T:0.06
Consensus pattern (16 bp):
CCCAAAAATCCCGAAA
Found at i:67882380 original size:29 final size:29
Alignment explanation
Indices: 67882325--67882413 Score: 99
Period size: 29 Copynumber: 3.1 Consensus size: 29
67882315 GTGAGCATGA
* * * *
67882325 ATATGAATGTGA-CTGGGCTTAACGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
67882353 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* * * *
67882382 GTATACAGGTGGTTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
67882411 ATA
1 ATA
67882414 GGAATATGAT
Statistics
Matches: 51, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
28 11 0.22
29 40 0.78
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.28
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:67882411 original size:58 final size:57
Alignment explanation
Indices: 67882338--67882448 Score: 132
Period size: 57 Copynumber: 1.9 Consensus size: 57
67882328 TGAATGTGAC
* * * *
67882338 TGGGCTTAACGGGCCATATAAATGTGATTTGGGCCTAATGGGCCGTATACAGGTGGTT
1 TGGGCCTAACGGGCCATAGAAATATGA-TTGGGCCTAATGGGCCGGATACAGGTGGTT
* * * **
67882396 TGGGCCTAATGGGCCATAGGAATATGATTGTGTTTAATGGGCCGGATACAGGT
1 TGGGCCTAACGGGCCATAGAAATATGATTGGGCCTAATGGGCCGGATACAGGT
67882449 ATGTGAACTT
Statistics
Matches: 44, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
57 22 0.50
58 22 0.50
ACGTcount: A:0.23, C:0.14, G:0.33, T:0.29
Consensus pattern (57 bp):
TGGGCCTAACGGGCCATAGAAATATGATTGGGCCTAATGGGCCGGATACAGGTGGTT
Found at i:67886898 original size:43 final size:42
Alignment explanation
Indices: 67886797--67886917 Score: 147
Period size: 43 Copynumber: 2.9 Consensus size: 42
67886787 TAAGGTTACT
67886797 AAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATAC
1 AAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATAC
* * *
67886839 GAGACTT-CGTGTAAGACTATAGT-TGGGCTATTGGCATCGATAC
1 AAGA-TTACGTGTAAGACCATA-TCTGGGATA-TGGCATCGATAC
* * *
67886882 AAGATTACATGCAAGACCATATCTGGGATGTGGCAT
1 AAGATTACGTGTAAGACCATATCTGGGATATGGCAT
67886918 TGGTACGGTA
Statistics
Matches: 65, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
42 31 0.48
43 34 0.52
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.27
Consensus pattern (42 bp):
AAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATAC
Found at i:67901632 original size:49 final size:49
Alignment explanation
Indices: 67901575--67901748 Score: 249
Period size: 49 Copynumber: 3.5 Consensus size: 49
67901565 CTGGTATGCA
67901575 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
* * * * ** * *
67901624 TAGTAGCCTGCACTTAGTGCTATACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCCGGTACACG
67901674 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
* *
67901723 TAGTATCCTGCATTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
67901749 CGTGACCTCA
Statistics
Matches: 106, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
49 65 0.61
50 41 0.39
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
Found at i:67901734 original size:99 final size:99
Alignment explanation
Indices: 67901575--67901756 Score: 328
Period size: 99 Copynumber: 1.8 Consensus size: 99
67901565 CTGGTATGCA
67901575 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
* *
67901640 GTGCTATACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGTGACCTAACCATCTGATACACG
* *
67901674 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTATCCTGCATTTA
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
67901739 GTACTACACACGTGACCT
66 GTACTACACACGTGACCT
67901757 CACAATAGAT
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
99 79 1.00
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
GTACTACACACGTGACCTAACCATCTGATACACG
Found at i:67904854 original size:40 final size:39
Alignment explanation
Indices: 67904787--67904981 Score: 169
Period size: 40 Copynumber: 4.9 Consensus size: 39
67904777 AATTATTGTT
** *
67904787 AGATACTAAATCCGGACTAAGAT-CCGAAGGCATTTGTGCA
1 AGATAC-AAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCG
* * *
67904827 AGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTTCG
1 AGATACAAA-TCCGGGTTAAGTCCCGAAGGCATTTGTGCG
* *
67904867 AGATACTAAATCCGGGTTAAGTTCCGAAGGCATTCGTGCG
1 AGATAC-AAATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
* * * * *
67904907 AGTTATTAAATCCGGATTATGTCCCGAAGGCA-TTGTGTG
1 AGATA-CAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
* * * *
67904946 AGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 AGATAC-AAATCCGGGTTAAGTCCCGAAGGCATTTG
67904982 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 22, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
39 35 0.28
40 89 0.70
41 3 0.02
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (39 bp):
AGATACAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
Found at i:67904921 original size:80 final size:79
Alignment explanation
Indices: 67904787--67904979 Score: 210
Period size: 80 Copynumber: 2.4 Consensus size: 79
67904777 AATTATTGTT
* * * *
67904787 AGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCAAGATACAAATTCCGGGTTAAGCCCC
1 AGATACTAAATCCGGGCTAAGTTCCGAAGGCATTCGTGCAAGATACAAATTCCGGATTAAGCCCC
*
67904852 GAAGGCCTT-TGTTCG
66 GAAGGCATTGTG-T-G
* * * * * *
67904867 AGATACTAAATCCGGGTTAAGTTCCGAAGGCATTCGTGCGAGTTATTAAA-TCCGGATTATGTCC
1 AGATACTAAATCCGGGCTAAGTTCCGAAGGCATTCGTGCAAGATA-CAAATTCCGGATTAAGCCC
67904931 CGAAGGCATTGTGTG
65 CGAAGGCATTGTGTG
* * * *
67904946 AGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 AGATACTAAATCCGGGCTAAGTTCCGAAGGCATT
67904980 TGAACGAGGA
Statistics
Matches: 95, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 30 0.32
80 60 0.63
81 5 0.05
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (79 bp):
AGATACTAAATCCGGGCTAAGTTCCGAAGGCATTCGTGCAAGATACAAATTCCGGATTAAGCCCC
GAAGGCATTGTGTG
Found at i:67904967 original size:39 final size:40
Alignment explanation
Indices: 67904810--67904979 Score: 173
Period size: 40 Copynumber: 4.3 Consensus size: 40
67904800 GGACTAAGAT
* * * * *
67904810 CCGAAGGCATTTGTGCAAGATAC-AAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGTTACTAAA-TCCGGGTTATGTC
* * * * * *
67904850 CCGAAGGCCTTTGTTCGAGATACTAAATCCGGGTTAAGTT
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTATGTC
* *
67904890 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGATTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTATGTC
* * *
67904930 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTATGTC
67904969 CCGAAGGCATT
1 CCGAAGGCATT
67904980 TGAACGAGGA
Statistics
Matches: 111, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
39 34 0.31
40 74 0.67
41 3 0.03
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTATGTC
Found at i:67912295 original size:79 final size:81
Alignment explanation
Indices: 67912159--67912343 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
67912149 TTGAATGATG
*
67912159 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
67912223 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * ** *
67912238 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGTA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
67912300 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
67912318 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
67912344 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:67912357 original size:40 final size:40
Alignment explanation
Indices: 67912160--67912343 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
67912150 TGAATGATGT
* * * *
67912160 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
67912200 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
67912240 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
67912278 TCCGGGTTAAGTCCCGAAGGTATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
67912319 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
67912344 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:67912365 original size:79 final size:79
Alignment explanation
Indices: 67912212--67912378 Score: 205
Period size: 79 Copynumber: 2.1 Consensus size: 79
67912202 GGACTAAGAT
* * **
67912212 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGTATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
67912277 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
67912291 CCGAAGGTATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGTATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
67912354 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
67912370 CCGAAGGTA
1 CCGAAGGTA
67912379 CGTGATTTGG
Statistics
Matches: 76, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGTATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:67920390 original size:79 final size:81
Alignment explanation
Indices: 67920254--67920438 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
67920244 TTGAATGATG
* *
67920254 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCCAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
67920318 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
67920333 TTCCGGGCTAAG-CCCGAAGGCATTTGT-CCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCCAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
67920395 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
67920413 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
67920439 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.65
80 31 0.34
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCCAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:67920445 original size:40 final size:39
Alignment explanation
Indices: 67920255--67920438 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 39
67920245 TGAATGATGT
* * * *
67920255 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* * *
67920295 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
67920335 CCGGGCTAAG-CCCGAAGGCATTTGTCCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
67920373 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
67920414 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
67920439 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:67920460 original size:79 final size:79
Alignment explanation
Indices: 67920307--67920471 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
67920297 GGACTAAGAT
* **
67920307 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTCCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
67920372 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
67920386 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
67920449 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
67920465 CCGAAGG
1 CCGAAGG
67920472 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:67924667 original size:51 final size:49
Alignment explanation
Indices: 67924493--67924736 Score: 229
Period size: 49 Copynumber: 4.9 Consensus size: 49
67924483 TAGCCAAAGC
* * * * *
67924493 TATCTGGTACGCATAGTAGCCTGTACTTAGTACTACACATGCGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* * * *
67924542 TA-CCTGGTACACGTAGTAGCCTGCACGTAGTACTACACACATGACCTAAC
1 TATCC-GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * * * * *
67924592 CATCTGATACACGTAGTAGCCTGCACTTAATACTACACACGTGATCGAAGT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-T
** ** * * *
67924643 TATTGGGTATGCATAGTAGCCTGCACTTAGTAATACACATGCGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
67924692 TATCCGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGAC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGAC
67924737 ATCACAATAG
Statistics
Matches: 152, Mismatches: 38, Indels: 10
0.76 0.19 0.05
Matches are distributed among these distances:
48 1 0.01
49 73 0.48
50 43 0.28
51 35 0.23
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:67928842 original size:17 final size:17
Alignment explanation
Indices: 67928820--67928857 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
67928810 TTGTTTATGT
67928820 TTAAGTCTGGTAATTCC
1 TTAAGTCTGGTAATTCC
67928837 TTAAGTCTGGTAATTCC
1 TTAAGTCTGGTAATTCC
67928854 TTAA
1 TTAA
67928858 ACCCTGTCCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.42
Consensus pattern (17 bp):
TTAAGTCTGGTAATTCC
Found at i:67938178 original size:27 final size:27
Alignment explanation
Indices: 67938148--67938793 Score: 674
Period size: 27 Copynumber: 24.2 Consensus size: 27
67938138 AAAGTACTCC
**
67938148 CGATTTACAGAATTTTCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
67938175 CGATTTACAGAATTACCGTTTTACCTT
1 CGATTTACAGAATTACCGTTTTACCCT
*
67938202 C-AGTTTATAGAATTACCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
67938229 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
67938256 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
67938283 CGATTTATAG----A---TTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* ** * *
67938303 TGATTTGTAAAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
67938330 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
67938357 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
67938384 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
67938411 CGGTTTACAAAATTACAGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
67938438 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
67938465 C-AGTTTACAAAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
67938492 CGATTTATAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * *
67938519 CGATTTTTAAAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
67938546 CGATTTATAGAATTACCGTTTTACCAT
1 CGATTTACAGAATTACCGTTTTACCCT
* * * ** *
67938573 -TAGGTTACAAAATTACTATTTCACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
67938600 CGATTTAGAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
67938627 C-AGTTTATAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
67938654 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
67938681 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
67938708 TGATTTACAGAATTACTAG-TTTACCCT
1 CGATTTACAGAATTAC-CGTTTTACCCT
* *
67938735 C-AGTTTACAAAATTATCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
67938762 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
67938789 TGATT
1 CGATT
67938794 GTGAAATTAC
Statistics
Matches: 522, Mismatches: 74, Indels: 46
0.81 0.12 0.07
Matches are distributed among these distances:
20 16 0.03
23 1 0.00
24 1 0.00
26 8 0.02
27 488 0.93
28 8 0.02
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:67938452 original size:108 final size:108
Alignment explanation
Indices: 67938166--67938788 Score: 829
Period size: 108 Copynumber: 5.8 Consensus size: 108
67938156 AGAATTTTCG
* * * *
67938166 TTTTACCCTCGATTTACAGAATTACCGTTTTACCTTCAGTTTATAGAATTACCGTTTTACCCTCG
1 TTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTATAAAATTACAGTTTTACCCTCG
*
67938231 ATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTA
66 ATTTACAGAATTACCGTTTTACCCTCAGTTTACAAAATTACTA
* * * *
67938274 TTTTACCCTCGATTT-----A-TA-GATTTTACCCT-TGATTTGTAAAATTACTGTTTTACCCTC
1 TTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAG-TTTATAAAATTACAGTTTTACCCTC
* *
67938331 GATTTACAGAATTACCATTTTACCCTCAGTTTACAGAATTACTA
65 GATTTACAGAATTACCGTTTTACCCTCAGTTTACAAAATTACTA
* *
67938375 TTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGGTTTACAAAATTACAGTTTTACCCTCG
1 TTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTATAAAATTACAGTTTTACCCTCG
67938440 ATTTACAGAATTACCGTTTTACCCTCAGTTTACAAAATTACTA
66 ATTTACAGAATTACCGTTTTACCCTCAGTTTACAAAATTACTA
* *
67938483 TTTTACCCTCGATTTATAGAATTACCATTTTACCCTC-GATTTTTAAAATTACCA-TTTTACCCT
1 TTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAG-TTTATAAAATTA-CAGTTTTACCCT
* * * *
67938546 CGATTTATAGAATTACCGTTTTACCATTAGGTTACAAAATTACTA
64 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAAAATTACTA
* * * *
67938591 TTTCACCCTCGATTTAGAGAATTACCATTTTACCCTCAGTTTATAGAATTACTGTTTTACCCTCG
1 TTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTATAAAATTACAGTTTTACCCTCG
** **
67938656 ATTTACAGAATTACCGTTTTACCCTC-GATTTGTAAAATTACCG
66 ATTTACAGAATTACCGTTTTACCCTCAG-TTTACAAAATTACTA
* * * *
67938699 TTTTACCCTTGATTTACAGAATTACTAGTTTACCCTCAGTTTACAAAATTATC-GTTTTACCCTC
1 TTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTATAAAATTA-CAGTTTTACCCTC
*
67938763 GATTTATAGAATTACCGTTTTACCCT
65 GATTTACAGAATTACCGTTTTACCCT
67938789 TGATTGTGAA
Statistics
Matches: 457, Mismatches: 43, Indels: 30
0.86 0.08 0.06
Matches are distributed among these distances:
100 1 0.00
101 88 0.19
102 2 0.00
103 1 0.00
106 1 0.00
107 5 0.01
108 354 0.77
109 5 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.40
Consensus pattern (108 bp):
TTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTATAAAATTACAGTTTTACCCTCG
ATTTACAGAATTACCGTTTTACCCTCAGTTTACAAAATTACTA
Found at i:67938828 original size:27 final size:27
Alignment explanation
Indices: 67938798--67938992 Score: 187
Period size: 27 Copynumber: 7.2 Consensus size: 27
67938788 TTGATTGTGA
* *
67938798 AATTACTGAAATGCCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* * *
67938825 AATT-TTCGAAATACCCCTATAGGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAG
* * *
67938852 AATTACTAAAATACCCTTATAGGATAG
1 AATTACTGAAATACCCTTGTAGGGTAG
** *
67938879 AATTACCAAAATACCCTTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
*
67938906 AATTA-TCGAAATACCCTTGTAGGATAG
1 AATTACT-GAAATACCCTTGTAGGGTAG
* * *
67938933 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* * * *
67938960 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACTGAAATACCCTTGTAGGGTAG
67938987 AATTAC
1 AATTAC
67938993 CATTTTGCCC
Statistics
Matches: 142, Mismatches: 22, Indels: 8
0.83 0.13 0.05
Matches are distributed among these distances:
26 1 0.01
27 140 0.99
28 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (27 bp):
AATTACTGAAATACCCTTGTAGGGTAG
Found at i:67938880 original size:54 final size:54
Alignment explanation
Indices: 67938798--67938993 Score: 232
Period size: 54 Copynumber: 3.6 Consensus size: 54
67938788 TTGATTGTGA
* * * **
67938798 AATTACTGAAATGCCCCTGTAGGGTAGAATTTTCGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGATAGAATTACCGAAATACCCCTATAGGGTAG
* * * *
67938852 AATTACTAAAATACCCTTATAGGATAGAATTACCAAAATACCCTTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGATAGAATTACCGAAATACCCCTATAGGGTAG
* *
67938906 AATTA-TCGAAATACCCTTGTAGGATAGAAATACCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCTTGTAGGATAGAATTACCGAAATACCCCTATAGGGTAG
* * * * *
67938960 AATTACCGAGATACCCTTGTGGGGTAAAATTACC
1 AATTACTGAAATACCCTTGTAGGATAGAATTACC
67938994 ATTTTGCCCC
Statistics
Matches: 119, Mismatches: 21, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
53 1 0.01
54 118 0.99
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (54 bp):
AATTACTGAAATACCCTTGTAGGATAGAATTACCGAAATACCCCTATAGGGTAG
Found at i:67938915 original size:81 final size:81
Alignment explanation
Indices: 67938817--67938991 Score: 215
Period size: 81 Copynumber: 2.2 Consensus size: 81
67938807 AATGCCCCTG
* * * * *
67938817 TAGGGTAGAATTTTCGAAATACCCCTATAGGGTAGAATTACTAAAATACCCTTATAGGATAGAAT
1 TAGGGTAGAATTATCGAAATACCCCTATAGGATAGAAATACCAAAATACCCCTATAGGATAGAAT
67938882 TACCAAAATACCCTTA
66 TACCAAAATACCCTTA
* * * * *
67938898 TAGGGTAGAATTATCGAAATACCCTTGTAGGATAGAAATACCGAAATACCCCTGTAGGGTAGAAT
1 TAGGGTAGAATTATCGAAATACCCCTATAGGATAGAAATACCAAAATACCCCTATAGGATAGAAT
* * *
67938963 TACCGAGATACCCTTG
66 TACCAAAATACCCTTA
* *
67938979 TGGGGTAAAATTA
1 TAGGGTAGAATTA
67938992 CCATTTTGCC
Statistics
Matches: 79, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 79 1.00
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.27
Consensus pattern (81 bp):
TAGGGTAGAATTATCGAAATACCCCTATAGGATAGAAATACCAAAATACCCCTATAGGATAGAAT
TACCAAAATACCCTTA
Found at i:67939253 original size:27 final size:26
Alignment explanation
Indices: 67939192--67939271 Score: 97
Period size: 27 Copynumber: 3.0 Consensus size: 26
67939182 CGGAGGAAGC
* *
67939192 GTTCTAGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
67939219 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
67939245 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
67939272 ATTGACCGAT
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 9 0.19
27 38 0.81
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:67939394 original size:22 final size:22
Alignment explanation
Indices: 67939362--67939420 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
67939352 CCCGTTATTA
*
67939362 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
67939384 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
67939406 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
67939421 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:67939639 original size:27 final size:28
Alignment explanation
Indices: 67939585--67939653 Score: 70
Period size: 27 Copynumber: 2.5 Consensus size: 28
67939575 TAGGTGGGTT
* * *
67939585 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTATCCTGGTGACTC
67939612 TGCCACAATATCTGTATCCT-GTGACTC
1 TGCCACAATATCTGTATCCTGGTGACTC
** *
67939639 TATCACGATATCTGT
1 TGCCACAATATCTGT
67939654 TCTGGCAGCC
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
27 31 0.89
28 4 0.11
ACGTcount: A:0.20, C:0.26, G:0.17, T:0.36
Consensus pattern (28 bp):
TGCCACAATATCTGTATCCTGGTGACTC
Found at i:67939785 original size:6 final size:6
Alignment explanation
Indices: 67939776--67939841 Score: 73
Period size: 6 Copynumber: 10.8 Consensus size: 6
67939766 TTGCATTCAC
* *
67939776 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
67939825 -TTACTG ATTCTG ATTCT
1 ATT-CTG ATTCTG ATTCT
67939842 CATTTTGGTT
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
5 3 0.06
6 43 0.84
7 4 0.08
8 1 0.02
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:67939811 original size:31 final size:30
Alignment explanation
Indices: 67939776--67939841 Score: 105
Period size: 31 Copynumber: 2.2 Consensus size: 30
67939766 TTGCATTCAC
67939776 ATTCTGATTCTGATTCTGTCACGTAATTCTG
1 ATTCTGATTCTGATTCTGTCAC-TAATTCTG
* *
67939807 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTCACTAATTCTG
67939837 ATTCT
1 ATTCT
67939842 CATTTTGGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
30 12 0.36
31 21 0.64
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.48
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTCACTAATTCTG
Found at i:67941887 original size:27 final size:27
Alignment explanation
Indices: 67941857--67942292 Score: 470
Period size: 27 Copynumber: 16.2 Consensus size: 27
67941847 AAAGTACTCC
* *
67941857 CGATTTATAGAATTTCCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
67941884 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
67941911 C-AGTTTATAGAATTACCATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
67941938 CGATTTACAAAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
67941965 C-AGTTTACAAAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* * *
67941992 CGATTTATAGAATTATCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* ** *
67942019 TGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
67942046 TGATTTACAAAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
67942073 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
67942100 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
67942127 C-AGTTTACAGAATTACTATTTT-CCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
67942153 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
67942180 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * * *
67942207 TGATTTATAGAATTACTGGTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
67942234 C-AGTTTACAAAATTATCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
67942261 CGATTTATAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
67942288 TGATT
1 CGATT
67942293 GTGAAATTAC
Statistics
Matches: 347, Mismatches: 51, Indels: 22
0.83 0.12 0.05
Matches are distributed among these distances:
26 27 0.08
27 316 0.91
28 4 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.42
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:67941958 original size:81 final size:81
Alignment explanation
Indices: 67941857--67942292 Score: 540
Period size: 81 Copynumber: 5.4 Consensus size: 81
67941847 AAAGTACTCC
* * * *
67941857 CGATTTATAGAATTTCCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGA
1 CGATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCAGTTTACAGA
67941922 ATTACCATTTTACCCT
66 ATTACCATTTTACCCT
* * * * *
67941938 CGATTTACAAAATTATCGTTTTACCCTC-AGTTTACAAAATTACTATTTTACCCTC-GATTTATA
1 CGATTTATAAAATTACCGTTTTACCCTCGA-TTTACAGAATTACTGTTTTACCCTCAG-TTTACA
*
67942001 GAATTATCATTTTACCCT
64 GAATTACCATTTTACCCT
* * * *
67942019 TGATTTGTAAAATTACCGTTTTACCCTTGATTTACAAAATTACTGTTTTACCCTCAGTTTACAGA
1 CGATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCAGTTTACAGA
*
67942084 ATTACTATTTTACCCT
66 ATTACCATTTTACCCT
* * *
67942100 CGATTTACAGAATTACCGTTTTACCCTC-AGTTTACAGAATTACTATTTT-CCCTC-GATTTACA
1 CGATTTATAAAATTACCGTTTTACCCTCGA-TTTACAGAATTACTGTTTTACCCTCAG-TTTACA
*
67942162 GAATTACCGTTTTACCCT
64 GAATTACCATTTTACCCT
* * * * *
67942180 CGATTTGTAAAATTACCGTTTTACCCTTGATTTATAGAATTACTGGTTTACCCTCAGTTTACAAA
1 CGATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCAGTTTACAGA
* *
67942245 ATTATCGTTTTACCCT
66 ATTACCATTTTACCCT
* * *
67942261 CGATTTATAGAATTACCATTTTACCCTTGATT
1 CGATTTATAAAATTACCGTTTTACCCTCGATT
67942293 GTGAAATTAC
Statistics
Matches: 308, Mismatches: 38, Indels: 18
0.85 0.10 0.05
Matches are distributed among these distances:
79 1 0.00
80 70 0.23
81 234 0.76
82 3 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.42
Consensus pattern (81 bp):
CGATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCAGTTTACAGA
ATTACCATTTTACCCT
Found at i:67942362 original size:54 final size:54
Alignment explanation
Indices: 67942297--67942492 Score: 241
Period size: 54 Copynumber: 3.6 Consensus size: 54
67942287 TTGATTGTGA
* ** * *
67942297 AATTACTGAAATACCCCTGTAGGGTAGAATTTTCGAAATACCTCTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
67942351 AATTACTGAAATACCCTTATAGGATAGAATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* *
67942405 AATTA-TCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTATGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * * *
67942459 AATTACCGAGATACCCTTATGGGGTAAAATTACC
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACC
67942493 ATTTTGCCCC
Statistics
Matches: 121, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
53 1 0.01
54 120 0.99
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (54 bp):
AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
Found at i:67942395 original size:81 final size:81
Alignment explanation
Indices: 67942305--67942474 Score: 238
Period size: 81 Copynumber: 2.1 Consensus size: 81
67942295 GAAATTACTG
* * *
67942305 AAATACCCCTGTAGGGTAGAATTTTCGAAATA-CCTCTATAGGGTAGAATTACTGAAATA-CCCT
1 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCT-TATAGGGTAGAAATACCGAAATACCCCT
67942368 -TATAGGATAGAATTACCA
65 GTAT-GG-TAGAATTACCA
*
67942386 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTG
1 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTATAGGGTAGAAATACCGAAATACCCCTG
*
67942451 TATGGTAGAATTACCG
66 TATGGTAGAATTACCA
*
67942467 AGATACCC
1 AAATACCC
67942475 TTATGGGGTA
Statistics
Matches: 80, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
81 68 0.85
82 9 0.11
83 3 0.04
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (81 bp):
AAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTATAGGGTAGAAATACCGAAATACCCCTG
TATGGTAGAATTACCA
Found at i:67942484 original size:27 final size:27
Alignment explanation
Indices: 67942297--67942492 Score: 205
Period size: 27 Copynumber: 7.3 Consensus size: 27
67942287 TTGATTGTGA
* * *
67942297 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTATAGGGTAG
**
67942324 AATTTTCGAAATA-CCTCTATAGGGTAG
1 AATTACCGAAATACCCT-TATAGGGTAG
* *
67942351 AATTACTGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCTTATAGGGTAG
* * *
67942378 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTATAGGGTAG
* *
67942405 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTATAGGGTAG
* * * *
67942432 AAATACCGAAATACCCCTGTATGGTAG
1 AATTACCGAAATACCCTTATAGGGTAG
* * *
67942459 AATTACCGAGATACCCTTATGGGGTAA
1 AATTACCGAAATACCCTTATAGGGTAG
67942486 AATTACC
1 AATTACC
67942493 ATTTTGCCCC
Statistics
Matches: 139, Mismatches: 28, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
26 2 0.01
27 134 0.96
28 3 0.02
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCTTATAGGGTAG
Found at i:67942729 original size:27 final size:26
Alignment explanation
Indices: 67942691--67942773 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
67942681 CGGAGGAAGC
*
67942691 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
67942718 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
67942744 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
67942771 GTT
1 GTT
67942774 GACCGATCGA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 10 0.20
27 41 0.80
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:67943106 original size:27 final size:27
Alignment explanation
Indices: 67943084--67943150 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
67943074 TAGGTGGGTT
*
67943084 TGCCACATTATCTGAT-TCTGGTGGCTC
1 TGCCACAATATCTG-TGTCTGGTGGCTC
*
67943111 TGCCACAATATCTGTGTCTGGTGACTC
1 TGCCACAATATCTGTGTCTGGTGGCTC
* *
67943138 TGTCACGATATCT
1 TGCCACAATATCT
67943151 ATTCTGGCAG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 1 0.03
27 34 0.97
ACGTcount: A:0.18, C:0.25, G:0.21, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTGTCTGGTGGCTC
Found at i:67943284 original size:6 final size:6
Alignment explanation
Indices: 67943275--67943346 Score: 76
Period size: 6 Copynumber: 11.8 Consensus size: 6
67943265 TTGCATTCAC
* * *
67943275 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTG ATTCTA ATTCT-
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
67943323 ATTACTG ATTCTG ATTCTG ATTCT
1 ATT-CTG ATTCTG ATTCTG ATTCT
67943347 CATTTTGGTT
Statistics
Matches: 56, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
5 4 0.07
6 46 0.82
7 5 0.09
8 1 0.02
ACGTcount: A:0.21, C:0.18, G:0.12, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:67961197 original size:23 final size:23
Alignment explanation
Indices: 67961167--67961215 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
67961157 CAACCAAACT
67961167 AATTAATTATGATTCAGTCATTA
1 AATTAATTATGATTCAGTCATTA
67961190 AATTAATTATGATTCAGTCATTA
1 AATTAATTATGATTCAGTCATTA
67961213 AAT
1 AAT
67961216 CAATCTTTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.43
Consensus pattern (23 bp):
AATTAATTATGATTCAGTCATTA
Found at i:67961834 original size:18 final size:18
Alignment explanation
Indices: 67961811--67961853 Score: 86
Period size: 18 Copynumber: 2.4 Consensus size: 18
67961801 AGCTAAGCAC
67961811 ACATAAAAACAAATTTAA
1 ACATAAAAACAAATTTAA
67961829 ACATAAAAACAAATTTAA
1 ACATAAAAACAAATTTAA
67961847 ACATAAA
1 ACATAAA
67961854 TAGCAAGCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.67, C:0.12, G:0.00, T:0.21
Consensus pattern (18 bp):
ACATAAAAACAAATTTAA
Found at i:67966477 original size:40 final size:40
Alignment explanation
Indices: 67966351--67966488 Score: 179
Period size: 40 Copynumber: 3.5 Consensus size: 40
67966341 AACCCAAGTA
* * * *
67966351 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGAACTTAGCCCGGATATAGTAACTAGCACAAATG
* * * *
67966390 CCTTCGGGACTTAGCTCGGATATAATCACTAGCACAAATG
1 CCTTCGGAACTTAGCCCGGATATAGTAACTAGCACAAATG
67966430 CCTTCGGAACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGAACTTAGCCCGGATATAGTAACTAGCACAAATG
* *
67966470 CCTTCGGATCTTAGTCCGG
1 CCTTCGGAACTTAGCCCGG
67966489 TTATCATCCG
Statistics
Matches: 86, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 13 0.15
40 73 0.85
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGAACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:67967056 original size:13 final size:13
Alignment explanation
Indices: 67967033--67967066 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
67967023 TTATTTTATT
67967033 ATTTCTAACACAAA
1 ATTT-TAACACAAA
67967047 ATTTTAACACAAA
1 ATTTTAACACAAA
67967060 ATGTTTA
1 AT-TTTA
67967067 TAATATGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.47, C:0.15, G:0.03, T:0.35
Consensus pattern (13 bp):
ATTTTAACACAAA
Found at i:67968304 original size:12 final size:12
Alignment explanation
Indices: 67968287--67968311 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
67968277 CCGAAACTAG
67968287 AAAGAAAAAAAC
1 AAAGAAAAAAAC
67968299 AAAGAAAAAAAC
1 AAAGAAAAAAAC
67968311 A
1 A
67968312 TGCTCATCCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.08, G:0.08, T:0.00
Consensus pattern (12 bp):
AAAGAAAAAAAC
Found at i:67969481 original size:39 final size:39
Alignment explanation
Indices: 67969386--67969607 Score: 265
Period size: 39 Copynumber: 5.6 Consensus size: 39
67969376 TTGAATGATG
*
67969386 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
67969424 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
67969465 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
*
67969504 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* *
67969543 TCCGGGTTAATCCCGAAGGCATTTGTGCGA-ATTACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGA-TACTAAT
* * *
67969582 AACCGGGCTATGTCCGAAGGCATTTG
1 -TCCGGGCTAAGCCCGAAGGCATTTG
67969608 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 15, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
38 1 0.01
39 117 0.72
40 32 0.20
41 11 0.07
42 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:67969527 original size:78 final size:79
Alignment explanation
Indices: 67969386--67969607 Score: 292
Period size: 78 Copynumber: 2.8 Consensus size: 79
67969376 TTGAATGATG
* *
67969386 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAAGT-ACTAATATCCGGGCTAAG-TCCGAAGGCAT
*
67969448 TTGTGCGAGATACTAAT
63 TTGTGCGAGATACTAAA
*
67969465 TCCGGGCTAAGCCCGAAGGCATTTGTGCG-AGATACTAAT-TCCGGGCTAAGCCCGAAGGCATTT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAAG-TACTAATATCCGGGCTAAGTCCGAAGGCATTT
67969528 GTGCGAGATACTAAA
65 GTGCGAGATACTAAA
* * * * *
67969543 TCCGGGTTAATCCCGAAGGCATTTGTGCGAATTACTAATAACCGGGCTATGTCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGTCCGAAGGCATTTG
67969608 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
78 69 0.54
79 48 0.38
80 10 0.08
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGTCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:67969629 original size:78 final size:79
Alignment explanation
Indices: 67969438--67969640 Score: 227
Period size: 78 Copynumber: 2.6 Consensus size: 79
67969428 GGACTAAGAT
** * * *
67969438 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCT-AAGCCCGAAGGCATTTGTGCGAGATACTA
1 CCGAAGGCATTTGAACGAGATACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGATACTA
*
67969502 ATTCCGGGCTAAGC
66 ATACCGGGCTAAGC
**
67969516 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTT-AATCCCGAAGGCATTTGTGCGA-ATTACT
1 CCGAAGGCATTTGAACGAGATACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGA-TACT
* *
67969579 AATAACCGGGCTATGT
65 AAT-ACCGGGCTAAGC
* * *
67969595 CCGAAGGCATTTGAACGAGGA-GCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGA-GATACTAAATCCGGGTTAAATCCCGAAGG
67969641 TACGTGATTT
Statistics
Matches: 110, Mismatches: 11, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
77 1 0.01
78 65 0.59
79 42 0.38
80 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGATACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGATACTA
ATACCGGGCTAAGC
Found at i:67990206 original size:27 final size:27
Alignment explanation
Indices: 67990155--67990206 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
67990145 AAGGTTAATC
*
67990155 TTCGATTTTATTTTCTTTATTTTTCAT
1 TTCGATTTTATTTTCTTTATATTTCAT
*
67990182 TTCGTTTTTA-TTTCTTTAATATTTC
1 TTCGATTTTATTTTCTTT-ATATTTC
67990207 TCTTTATTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.15, C:0.12, G:0.04, T:0.69
Consensus pattern (27 bp):
TTCGATTTTATTTTCTTTATATTTCAT
Done.