Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 208 of 356
Found at i:67991026 original size:6 final size:6
Alignment explanation
Indices: 67991015--67991052 Score: 58
Period size: 6 Copynumber: 6.0 Consensus size: 6
67991005 TTCATCATTC
67991015 TTTTAT TTTTAT TTTTAT TTTTATT TTATTAT TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTA-T TT-TTAT TTTTAT
67991053 ATTCTTTATC
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
6 21 0.70
7 6 0.20
8 3 0.10
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTAT
Found at i:67991788 original size:29 final size:28
Alignment explanation
Indices: 67991756--67991827 Score: 76
Period size: 29 Copynumber: 2.5 Consensus size: 28
67991746 TTATATATAT
67991756 ATATTATGTATTTTTAAAATTATTTTT-AC
1 ATATTAT-TATTTTTAAAATT-TTTTTCAC
67991785 ATATTAATTA-TTTTAAAATTTTTTTCCAC
1 ATATT-ATTATTTTTAAAATTTTTTT-CAC
*
67991814 ATATGATTTATTTT
1 ATATTA-TTATTTT
67991828 AAATCTTTGT
Statistics
Matches: 37, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
27 5 0.14
28 11 0.30
29 16 0.43
30 5 0.14
ACGTcount: A:0.33, C:0.06, G:0.03, T:0.58
Consensus pattern (28 bp):
ATATTATTATTTTTAAAATTTTTTTCAC
Found at i:67991831 original size:28 final size:28
Alignment explanation
Indices: 67991767--67991830 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 28
67991757 TATTATGTAT
*
67991767 TTTTAAAATTATTTTTACATATTAATTA
1 TTTTAAAATTATTTTTACATATGAATTA
*
67991795 TTTTAAAATT-TTTTTCCACATATGATTTA
1 TTTTAAAATTATTTTT--ACATATGAATTA
67991824 TTTTAAA
1 TTTTAAA
67991831 TCTTTGTGTA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
27 5 0.16
28 10 0.31
29 17 0.53
ACGTcount: A:0.36, C:0.06, G:0.02, T:0.56
Consensus pattern (28 bp):
TTTTAAAATTATTTTTACATATGAATTA
Found at i:67991925 original size:27 final size:25
Alignment explanation
Indices: 67991893--67991945 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 25
67991883 ATTTTATATG
67991893 TTATTTACTTTAAAAATTTCTTGTACA
1 TTATTTA-TTT-AAAATTTCTTGTACA
* *
67991920 TTATTTATTTTAAATTTCTTTTACA
1 TTATTTATTTAAAATTTCTTGTACA
67991945 T
1 T
67991946 ATTGTTATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 14 0.58
26 3 0.12
27 7 0.29
ACGTcount: A:0.30, C:0.09, G:0.02, T:0.58
Consensus pattern (25 bp):
TTATTTATTTAAAATTTCTTGTACA
Found at i:67991986 original size:21 final size:24
Alignment explanation
Indices: 67991906--67992004 Score: 80
Period size: 24 Copynumber: 4.1 Consensus size: 24
67991896 TTTACTTTAA
67991906 AAATTTCTTGTACAT-TATTTATTTT
1 AAATTTCTT-TACATATA-TTATTTT
*
67991931 AAATTTCTTTTACATATTGTTATTTT
1 AAATTTC-TTTACATA-TATTATTTT
* ***
67991957 GAGCCTC-TTA-ATAT-TTATTTT
1 AAATTTCTTTACATATATTATTTT
*
67991978 AAATTTCTTTATATATATTATTTT
1 AAATTTCTTTACATATATTATTTT
67992002 AAA
1 AAA
67992005 CTTGTCTTGC
Statistics
Matches: 59, Mismatches: 9, Indels: 13
0.73 0.11 0.16
Matches are distributed among these distances:
21 10 0.17
22 4 0.07
23 7 0.12
24 13 0.22
25 12 0.20
26 12 0.20
27 1 0.02
ACGTcount: A:0.30, C:0.08, G:0.04, T:0.58
Consensus pattern (24 bp):
AAATTTCTTTACATATATTATTTT
Found at i:67991995 original size:25 final size:25
Alignment explanation
Indices: 67991875--67992004 Score: 69
Period size: 24 Copynumber: 5.2 Consensus size: 25
67991865 CATTACTTGG
*
67991875 TTTAAATTAT-TTTATATGTTATTTACT
1 TTTAAATT-TCTTTATAT-ATATTTA-T
* *
67991902 TTAAAAATTTCTTGTACAT-TATTTAT
1 TT-TAAATTTCTT-TATATATATTTAT
*
67991928 TTTAAATTTCTTT-TACATATTGTTAT
1 TTTAAATTTCTTTATATATA-T-TTAT
* ** *
67991954 TTT-GA-GCCTCT-TA-ATATTTAT
1 TTTAAATTTCTTTATATATATTTAT
67991975 TTTAAATTTCTTTATATATA-TTAT
1 TTTAAATTTCTTTATATATATTTAT
67991999 TTTAAA
1 TTTAAA
67992005 CTTGTCTTGC
Statistics
Matches: 80, Mismatches: 13, Indels: 23
0.69 0.11 0.20
Matches are distributed among these distances:
21 7 0.09
22 2 0.03
23 7 0.09
24 20 0.25
25 14 0.17
26 10 0.12
27 9 0.11
28 7 0.09
29 4 0.05
ACGTcount: A:0.31, C:0.07, G:0.04, T:0.58
Consensus pattern (25 bp):
TTTAAATTTCTTTATATATATTTAT
Found at i:67992284 original size:26 final size:26
Alignment explanation
Indices: 67992233--67992285 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
67992223 CATTTTAAAA
* * *
67992233 TTGTTTTACATCTTATTCATTTTTAT
1 TTGTTTTACACCTTATTAATTATTAT
67992259 TTGTTTTACACCTT-TTAAATTATTAT
1 TTGTTTTACACCTTATT-AATTATTAT
67992285 T
1 T
67992286 AAATTCGTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.23, C:0.11, G:0.04, T:0.62
Consensus pattern (26 bp):
TTGTTTTACACCTTATTAATTATTAT
Found at i:68004265 original size:96 final size:95
Alignment explanation
Indices: 68004139--68004321 Score: 269
Period size: 96 Copynumber: 1.9 Consensus size: 95
68004129 GGATCAAAGC
**
68004139 CACTAACCTTATCTCCCTGAAGATGCAGTGGAGTAGGTCGAAGATAGCTAA-TCTTATTTCTCTG
1 CACTAACCTTATCTCCCTGAAGATGCAGTGGAGTAGGTCGAAGATA-C-AAGTCTTACCTCTCTG
*
68004203 AAGTTGCAGTGGGGCAGATTGAAGCTACAAAT
64 AAGTTGCAGTGGAGCAGATTGAAGCTACAAAT
* * * * *
68004235 CACTATCCTTATCTCCCTGAAGATGTAGTGGAGTAGGTTGAAGTTACAAGTCTTACCTCTTTGAA
1 CACTAACCTTATCTCCCTGAAGATGCAGTGGAGTAGGTCGAAGATACAAGTCTTACCTCTCTGAA
68004300 GTTGCAGTGGAGCAGATTGAAG
66 GTTGCAGTGGAGCAGATTGAAG
68004322 ATGGCGAATT
Statistics
Matches: 78, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
94 2 0.03
95 34 0.44
96 42 0.54
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.30
Consensus pattern (95 bp):
CACTAACCTTATCTCCCTGAAGATGCAGTGGAGTAGGTCGAAGATACAAGTCTTACCTCTCTGAA
GTTGCAGTGGAGCAGATTGAAGCTACAAAT
Found at i:68004276 original size:51 final size:50
Alignment explanation
Indices: 68004139--68004283 Score: 131
Period size: 51 Copynumber: 3.0 Consensus size: 50
68004129 GGATCAAAGC
* *
68004139 CACTAACCTTATCTCCCTGAAGATGCAGTGGAGTAGGTCGAAGATAGC--T
1 CACTATCCTTATCTCCCTGAAGATGCAGTGGAGTAGGTTGAAGATA-CAAT
* * * * * * *
68004188 -A--AT-CTTATTTCTCTGAAGTTGCAGTGGGGCAGATTGAAGCTACAAAT
1 CACTATCCTTATCTCCCTGAAGATGCAGTGGAGTAGGTTGAAGATAC-AAT
* *
68004235 CACTATCCTTATCTCCCTGAAGATGTAGTGGAGTAGGTTGAAGTTACAA
1 CACTATCCTTATCTCCCTGAAGATGCAGTGGAGTAGGTTGAAGATACAA
68004284 GTCTTACCTC
Statistics
Matches: 72, Mismatches: 17, Indels: 13
0.71 0.17 0.13
Matches are distributed among these distances:
44 1 0.01
45 31 0.43
46 1 0.01
47 1 0.01
48 2 0.03
50 4 0.06
51 32 0.44
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (50 bp):
CACTATCCTTATCTCCCTGAAGATGCAGTGGAGTAGGTTGAAGATACAAT
Found at i:68004471 original size:97 final size:97
Alignment explanation
Indices: 68004305--68004515 Score: 359
Period size: 97 Copynumber: 2.2 Consensus size: 97
68004295 TTGAAGTTGC
*
68004305 AGTGGAGCAGATTGAAGATGGCGAATTTTATCTTCCTGAAGTTGCAGTGAAGTAGATTAAAGCCA
1 AGTGGAACAGATTGAAGATGGCGAATTTTATCTTCCTGAAGTTGCAGTGAAGTAGATTAAAGCCA
68004370 TCAATCTTATCTCCCTAAGGTCGCAGAGGAGT
66 TCAATCTTATCTCCCTAAGGTCGCAGAGGAGT
* * *
68004402 AGTGGATCAGATTGAAGATGGTGAATTTTATCTTCCTGAAGTTGCAGTGAAGTTGATTAAAGCCA
1 AGTGGAACAGATTGAAGATGGCGAATTTTATCTTCCTGAAGTTGCAGTGAAGTAGATTAAAGCCA
* * *
68004467 TCAATCTTGTCTCCCTGAGGTCGCAGTGGAGT
66 TCAATCTTATCTCCCTAAGGTCGCAGAGGAGT
68004499 AGTGGAACAGATTGAAG
1 AGTGGAACAGATTGAAG
68004516 CTATAAATTC
Statistics
Matches: 107, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
97 107 1.00
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (97 bp):
AGTGGAACAGATTGAAGATGGCGAATTTTATCTTCCTGAAGTTGCAGTGAAGTAGATTAAAGCCA
TCAATCTTATCTCCCTAAGGTCGCAGAGGAGT
Found at i:68004587 original size:41 final size:41
Alignment explanation
Indices: 68004541--68004677 Score: 107
Period size: 41 Copynumber: 3.2 Consensus size: 41
68004531 CTTATTTCTC
68004541 TGAAGTTGCAGCAGAATAGATCAAAACAAGTCTTATCTCCT
1 TGAAGTTGCAGCAGAATAGATCAAAACAAGTCTTATCTCCT
* *** ** ** *
68004582 TGAAGTTACAATGGAGCAGGCCAAAA-ATAGCGGATCTTAT-TTCT
1 TGAAGTTGCAGCAGAATAGATCAAAACA-A---G-TCTTATCTCCT
* *
68004626 CTAAAGTTGCAGCAGAATAGATCAAAACAAGTCTTATCTCTT
1 -TGAAGTTGCAGCAGAATAGATCAAAACAAGTCTTATCTCCT
68004668 TGAAGTTGCA
1 TGAAGTTGCA
68004678 ATGGAGTAGG
Statistics
Matches: 67, Mismatches: 21, Indels: 16
0.64 0.20 0.15
Matches are distributed among these distances:
40 1 0.01
41 34 0.51
42 3 0.04
44 4 0.06
45 24 0.36
46 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.28
Consensus pattern (41 bp):
TGAAGTTGCAGCAGAATAGATCAAAACAAGTCTTATCTCCT
Found at i:68004638 original size:86 final size:86
Alignment explanation
Indices: 68004528--68004723 Score: 329
Period size: 86 Copynumber: 2.3 Consensus size: 86
68004518 ATAAATTCCA
68004528 GATCTTATTTCTCTGAAGTTGCAGCAGAATAGATCAAAACAAGTCTTATCTCCTTGAAGTTACAA
1 GATCTTATTTCTCTGAAGTTGCAGCAGAATAGATCAAAACAAGTCTTATCTCCTTGAAGTTACAA
68004593 TGGAGCAGGCCAAAAATAGCG
66 TGGAGCAGGCCAAAAATAGCG
* * *
68004614 GATCTTATTTCTCTAAAGTTGCAGCAGAATAGATCAAAACAAGTCTTATCTCTTTGAAGTTGCAA
1 GATCTTATTTCTCTGAAGTTGCAGCAGAATAGATCAAAACAAGTCTTATCTCCTTGAAGTTACAA
* *
68004679 TGGAGTAGGCCGAAAATAGCG
66 TGGAGCAGGCCAAAAATAGCG
* *
68004700 GATTTTATCTCTCTGAAGTTGCAG
1 GATCTTATTTCTCTGAAGTTGCAG
68004724 TAAAGTAGAC
Statistics
Matches: 102, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
86 102 1.00
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (86 bp):
GATCTTATTTCTCTGAAGTTGCAGCAGAATAGATCAAAACAAGTCTTATCTCCTTGAAGTTACAA
TGGAGCAGGCCAAAAATAGCG
Found at i:68006736 original size:137 final size:137
Alignment explanation
Indices: 68006487--68006773 Score: 529
Period size: 137 Copynumber: 2.1 Consensus size: 137
68006477 CATTGGGCCT
**
68006487 AAGCCCATTCAGGTAATAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAATAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
* *
68006552 AGACCCTTATTCAGATAACAGTGTGGCCCATAGGCCCATTTCGAAATACATGCAACATCAGTAAA
66 AGACCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
68006617 CATATGC
131 CATATGC
68006624 AAGCCCATTTGGGTAATAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAATAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
68006689 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGACCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
68006754 CATATGC
131 CATATGC
68006761 AAGCCCATTTGGG
1 AAGCCCATTTGGG
68006774 GAGACTACTT
Statistics
Matches: 145, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
137 145 1.00
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAATAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGACCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:68007058 original size:25 final size:27
Alignment explanation
Indices: 68007021--68007073 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
68007011 TCAAACATGC
68007021 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGTCAATTTAACTCCTAGGGGT
* *
68007047 ATTTCAGT-AATTTATCTCCTAGGGGT
1 ATTTAAGTCAATTTAACTCCTAGGGGT
68007073 A
1 A
68007074 AAACTATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.38
Consensus pattern (27 bp):
ATTTAAGTCAATTTAACTCCTAGGGGT
Found at i:68008594 original size:26 final size:26
Alignment explanation
Indices: 68008558--68008667 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
68008548 CATGAAATTC
68008558 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
68008584 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
68008610 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
68008636 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
68008662 TTATCA
1 TTATCA
68008668 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:68011207 original size:27 final size:27
Alignment explanation
Indices: 68011177--68011354 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
68011167 ATATTGAGTC
* *
68011177 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
68011204 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
68011231 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
68011259 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
68011286 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
68011313 CGCACACTTAGTG-TAACATAGTCAAAT
1 CGCACACTTAGTGCT-ACATAATCAACT
68011340 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
68011355 GTACAATTTA
Statistics
Matches: 128, Mismatches: 18, Indels: 9
0.83 0.12 0.06
Matches are distributed among these distances:
27 103 0.80
28 25 0.20
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:68011316 original size:82 final size:81
Alignment explanation
Indices: 68011198--68011353 Score: 226
Period size: 82 Copynumber: 1.9 Consensus size: 81
68011188 TGCTATATAA
*
68011198 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCT-ACATAGTCAAACTCGC
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTG-TAACATAGTCAAA-TCGC
68011262 ACACTTAGTGCCGCATGG
64 ACACTTAGTGCCGCATGG
* * **
68011280 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGTAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGTAACATAGTCAAATCGCA
68011344 CACTTAGTGC
65 CACTTAGTGC
68011354 TGTACAATTT
Statistics
Matches: 67, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
81 17 0.25
82 50 0.75
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGTAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:68022422 original size:27 final size:27
Alignment explanation
Indices: 68022391--68022568 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
68022381 TAAATTGTAC
68022391 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
68022418 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
68022444 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
68022472 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
68022500 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
68022527 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
68022554 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
68022569 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:68022505 original size:82 final size:81
Alignment explanation
Indices: 68022392--68022547 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
68022382 AAATTGTACA
* *
68022392 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
68022456 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
68022473 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
68022538 TGCGAGTTGA
65 TGCGAATTGA
68022548 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:68022559 original size:82 final size:81
Alignment explanation
Indices: 68022388--68022568 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
68022378 GATTAAATTG
* *
68022388 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
68022453 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
68022469 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
68022533 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
68022551 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
68022569 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:68025060 original size:22 final size:23
Alignment explanation
Indices: 68025032--68025112 Score: 83
Period size: 22 Copynumber: 3.3 Consensus size: 23
68025022 TGATACAAAT
68025032 TGATAATAGGTTGGTATGTT-CA
1 TGATAATAGGTTGGTATGTTCCA
*
68025054 TGATAATAGGTTAGTAAATGTTCCA
1 TGATAATAGGTTGGT--ATGTTCCA
*
68025079 TGATAATGGGTTAGGTAAATGTTTCCA
1 TGATAATAGGTT-GGT--ATG-TTCCA
68025106 TGATAAT
1 TGATAAT
68025113 GTTAGGTAAA
Statistics
Matches: 51, Mismatches: 3, Indels: 5
0.86 0.05 0.08
Matches are distributed among these distances:
22 14 0.27
24 5 0.10
25 13 0.25
26 7 0.14
27 12 0.24
ACGTcount: A:0.32, C:0.06, G:0.23, T:0.38
Consensus pattern (23 bp):
TGATAATAGGTTGGTATGTTCCA
Found at i:68025090 original size:25 final size:25
Alignment explanation
Indices: 68025032--68025134 Score: 112
Period size: 25 Copynumber: 4.2 Consensus size: 25
68025022 TGATACAAAT
68025032 TGATAATAGGTT-GGT--ATGTT-CA
1 TGATAAT-GGTTAGGTAAATGTTCCA
68025054 TGATAATAGGTTA-GTAAATGTTCCA
1 TGATAAT-GGTTAGGTAAATGTTCCA
68025079 TGATAATGGGTTAGGTAAATGTTTCCA
1 TGATAAT-GGTTAGGTAAATG-TTCCA
*
68025106 TGATAAT-GTTAGGTAAAT-TTTCA
1 TGATAATGGTTAGGTAAATGTTCCA
68025129 TGATAA
1 TGATAA
68025135 GAATTTCATG
Statistics
Matches: 73, Mismatches: 2, Indels: 11
0.85 0.02 0.13
Matches are distributed among these distances:
22 14 0.19
23 10 0.14
24 5 0.07
25 25 0.34
26 7 0.10
27 12 0.16
ACGTcount: A:0.33, C:0.06, G:0.22, T:0.39
Consensus pattern (25 bp):
TGATAATGGTTAGGTAAATGTTCCA
Found at i:68025110 original size:27 final size:26
Alignment explanation
Indices: 68025052--68025134 Score: 113
Period size: 25 Copynumber: 3.3 Consensus size: 26
68025042 TTGGTATGTT
68025052 CATGATAATAGGTTA-GTAAATG-TTC
1 CATGATAAT-GGTTAGGTAAATGTTTC
68025077 CATGATAATGGGTTAGGTAAATGTTTC
1 CATGATAAT-GGTTAGGTAAATGTTTC
68025104 CATGATAAT-GTTAGGTAAAT-TTT-
1 CATGATAATGGTTAGGTAAATGTTTC
68025127 CATGATAA
1 CATGATAA
68025135 GAATTTCATG
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
23 8 0.15
24 3 0.05
25 25 0.45
26 7 0.13
27 12 0.22
ACGTcount: A:0.35, C:0.07, G:0.20, T:0.37
Consensus pattern (26 bp):
CATGATAATGGTTAGGTAAATGTTTC
Found at i:68038944 original size:41 final size:41
Alignment explanation
Indices: 68038887--68039032 Score: 177
Period size: 41 Copynumber: 3.6 Consensus size: 41
68038877 GTTTTAAATT
* *
68038887 CGAGCTTTGTCTCGAAGGGCTTTTGAGCCGGTGTCATAATC
1 CGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATC
*
68038928 CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAA-C
1 CGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATC
* * * * * * * *
68038968 CGAACCTAGTTTTGAAGGGCCTTCGGGCCAATGTCATAATC
1 CGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATC
*
68039009 CAAGCTTAGTCTCGAAGGGCTTTT
1 CGAGCTTAGTCTCGAAGGGCTTTT
68039033 TGAGTCAGCG
Statistics
Matches: 86, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
40 31 0.36
41 55 0.64
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (41 bp):
CGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATC
Found at i:68044472 original size:47 final size:47
Alignment explanation
Indices: 68044413--68045147 Score: 1245
Period size: 47 Copynumber: 15.3 Consensus size: 47
68044403 ATACGTGAAA
*
68044413 GTATATATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAGT
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
68044460 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
68044507 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 G--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
68044556 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
68044603 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 G--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
*
68044652 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
68044699 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
*
68044746 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGACTGTGAAAGT
1 G--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
68044795 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 G--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
68044844 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 G--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
68044893 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
68044940 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 G--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
68044989 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 G--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
68045038 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
* * * * * * *
68045085 GTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGT
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
*
68045132 GTATAAATGTGATAAG
1 GTATATATGTGATAAG
68045148 TCCCGAAGGG
Statistics
Matches: 665, Mismatches: 15, Indels: 16
0.96 0.02 0.02
Matches are distributed among these distances:
47 333 0.50
49 332 0.50
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (47 bp):
GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
Found at i:68044522 original size:96 final size:96
Alignment explanation
Indices: 68044414--68045147 Score: 1273
Period size: 96 Copynumber: 7.6 Consensus size: 96
68044404 TACGTGAAAG
*
68044414 TATATATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
68044479 TAATGGCCGATGTGATGAATGTGAAAGTGTA
66 TAATGGCCGATGTGATGAATGTGAAAGTGTA
68044510 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
68044575 TAATGGCCGATGTGATGAATGTGAAAGTGTA
66 TAATGGCCGATGTGATGAATGTGAAAGTGTA
*
68044606 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
68044671 TAATGGCCGATGTGATGAATGTGAAAGTG--
66 TAATGGCCGATGTGATGAATGTGAAAGTGTA
68044700 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGG
*
68044765 CCTAATGGCCGATGTGATGACTGTGAAAGTGTA
64 CCTAATGGCCGATGTGATGAATGTGAAAGTGTA
68044798 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGG
68044863 CCTAATGGCCGATGTGATGAATGTGAAAGTG--
64 CCTAATGGCCGATGTGATGAATGTGAAAGTGTA
68044894 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGG
68044959 CCTAATGGCCGATGTGATGAATGTGAAAGTGTA
64 CCTAATGGCCGATGTGATGAATGTGAAAGTGTA
68044992 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
68045057 TAATGGCCGATGTGATGAATGTGAAAGTG--
66 TAATGGCCGATGTGATGAATGTGAAAGTGTA
* * * * * * * *
68045086 TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
68045148 TCCCGAAGGG
Statistics
Matches: 619, Mismatches: 13, Indels: 14
0.96 0.02 0.02
Matches are distributed among these distances:
94 100 0.16
96 377 0.61
98 142 0.23
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (96 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
TAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:68044533 original size:49 final size:49
Alignment explanation
Indices: 68044414--68045147 Score: 1275
Period size: 49 Copynumber: 15.3 Consensus size: 49
68044404 TACGTGAAAG
*
68044414 TATATATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTG--
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
68044461 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
68044510 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
68044557 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
68044606 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
68044653 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
68044700 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
68044749 TATATATGTGATAAGGCCTAATGGCCGATGTGATGACTGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
68044798 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
68044847 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
68044894 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
68044943 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
68044992 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
68045039 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* * * * * * *
68045086 TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
68045135 TA-A-ATGTGATAAG
1 TATATATGTGATAAG
68045148 TCCCGAAGGG
Statistics
Matches: 663, Mismatches: 12, Indels: 24
0.95 0.02 0.03
Matches are distributed among these distances:
47 329 0.50
48 1 0.00
49 333 0.50
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:68052729 original size:47 final size:47
Alignment explanation
Indices: 68052678--68053197 Score: 733
Period size: 47 Copynumber: 11.1 Consensus size: 47
68052668 GATTTTATGA
68052678 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
**
68052725 GATGAATGTGAACATGCATATGTGTGATAAGGTAGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
* * * * *
68052772 GATAAACGTGGAA-GTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGT-GAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
68052819 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
* * * * *
68052866 GATAAACGTGGAA-GTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGT-GAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
68052913 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
* * * * *
68052960 GATAAACGTGGAA-GTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGT-GAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
* * * *
68053007 GAGGAATATGAACATACATATGTGTGATATGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
* * * *
68053054 GATAAACGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACA-TGCATATGTGTGATAAGGCCGAATGGCCAATGT
68053101 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
**
68053148 GATGAATGTGAACATGCATATGTGTGATAAGGTAGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
68053195 GAT
1 GAT
68053198 AAACGTGGAA
Statistics
Matches: 413, Mismatches: 52, Indels: 16
0.86 0.11 0.03
Matches are distributed among these distances:
46 10 0.02
47 393 0.95
48 10 0.02
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.26
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
Found at i:68052774 original size:22 final size:22
Alignment explanation
Indices: 68052747--68052821 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 22
68052737 CATGCATATG
68052747 TGTGATAAGGTAGAATGGCCAA
1 TGTGATAAGGTAGAATGGCCAA
* * ***
68052769 TGTGATAAACGTGGAAGTGTATATA
1 TGTGAT-AAGGTAGAA-TGGCCA-A
**
68052794 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGTAGAATGGCCAA
68052816 TGTGAT
1 TGTGAT
68052822 GAATGTGAAC
Statistics
Matches: 39, Mismatches: 11, Indels: 6
0.70 0.20 0.11
Matches are distributed among these distances:
22 13 0.33
23 10 0.26
24 9 0.23
25 7 0.18
ACGTcount: A:0.33, C:0.09, G:0.31, T:0.27
Consensus pattern (22 bp):
TGTGATAAGGTAGAATGGCCAA
Found at i:68052802 original size:94 final size:94
Alignment explanation
Indices: 68052695--68053197 Score: 855
Period size: 94 Copynumber: 5.4 Consensus size: 94
68052685 GTGAACATGC
* **
68052695 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGTAG
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
68052760 AATGGCCAATGTGATAAACGTGGAAGTGT
66 AATGGCCAATGTGATAAACGTGGAAGTGT
68052789 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
68052854 AATGGCCAATGTGATAAACGTGGAAGTGT
66 AATGGCCAATGTGATAAACGTGGAAGTGT
68052883 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
68052948 AATGGCCAATGTGATAAACGTGGAAGTGT
66 AATGGCCAATGTGATAAACGTGGAAGTGT
* * * *
68052977 ATATATGTGATAAGGCCGAATGGCCAATGTGAGGAATATGAACATACATATGTGTGATATGGCCG
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
*
68053042 AATGGCCAATGTGATAAACGTGAAAGTGT
66 AATGGCCAATGTGATAAACGTGGAAGTGT
68053071 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
* * * *
68053136 AATGGCCAATGTGATGAATGT-GAACATGC
66 AATGGCCAATGTGATAAACGTGGAA-GTGT
* **
68053165 ATATGTGTGATAAGGTAGAATGGCCAATGTGAT
1 ATATATGTGATAAGGCCGAATGGCCAATGTGAT
68053198 AAACGTGGAA
Statistics
Matches: 388, Mismatches: 20, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
93 2 0.01
94 386 0.99
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.26
Consensus pattern (94 bp):
ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
AATGGCCAATGTGATAAACGTGGAAGTGT
Found at i:68052839 original size:141 final size:141
Alignment explanation
Indices: 68052678--68053243 Score: 825
Period size: 141 Copynumber: 4.0 Consensus size: 141
68052668 GATTTTATGA
68052678 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
*
68052743 TATGTGTGATAAGGTAGAATGGCCAATGTGATAAACGTGGAAGTGTATATATGTGATAAGGCCGA
66 TATGTGTGATAAGGCAGAATGGCCAATGTGATAAACGTGGAAGTGTATATATGTGATAAGGCCGA
68052808 ATGGCCAATGT
131 ATGGCCAATGT
* * * *
68052819 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATAAACGTGGAA-GTGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGT-GAACATGC
* * * * * * *
68052883 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGT-GAACATGCATATGTGTGATAAGGCC
65 ATATGTGTGATAAGGCAGAATGGCCAATGTGATAAACGTGGAA-GTGTATATATGTGATAAGGCC
68052947 GAATGGCCAATGT
129 GAATGGCCAATGT
* * * * * * * *
68052960 GATAAACGTGGAA-GTGTATATATGTGATAAGGCCGAATGGCCAATGTGAGGAATATGAACATAC
1 GATGAATGT-GAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
* * *
68053024 ATATGTGTGATATGGCCGAATGGCCAATGTGATAAACGTGAAAGTGTATATATGTGATAAGGCCG
65 ATATGTGTGATAAGGCAGAATGGCCAATGTGATAAACGTGGAAGTGTATATATGTGATAAGGCCG
68053089 AATGGCCAATGT
130 AATGGCCAATGT
68053101 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
* **
68053166 TATGTGTGATAAGGTAGAATGGCCAATGTGATAAACGTGGAAGTGTATATATGTGGCGAA-GCCG
66 TATGTGTGATAAGGCAGAATGGCCAATGTGATAAACGTGGAAGTGTATATATGT-GATAAGGCCG
*
68053230 AATGGCTAATGT
130 AATGGCCAATGT
68053242 GA
1 GA
68053244 GATATGTATG
Statistics
Matches: 371, Mismatches: 47, Indels: 14
0.86 0.11 0.03
Matches are distributed among these distances:
140 9 0.02
141 351 0.95
142 11 0.03
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (141 bp):
GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
TATGTGTGATAAGGCAGAATGGCCAATGTGATAAACGTGGAAGTGTATATATGTGATAAGGCCGA
ATGGCCAATGT
Found at i:68053103 original size:22 final size:22
Alignment explanation
Indices: 68053075--68053150 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
68053065 AAGTGTATAT
68053075 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* *
68053097 ATGTGATGAATG-TGAACAT-G-CA
1 ATGTGAT-AAGGCCG-A-ATGGCCA
68053119 TATGTGTGATAAGGCCGAATGGCCA
1 -A--TGTGATAAGGCCGAATGGCCA
68053144 ATGTGAT
1 ATGTGAT
68053151 GAATGTGAAC
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 16 0.39
23 8 0.20
24 8 0.20
25 9 0.22
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:68053171 original size:23 final size:23
Alignment explanation
Indices: 68053097--68053171 Score: 59
Period size: 23 Copynumber: 3.2 Consensus size: 23
68053087 CGAATGGCCA
68053097 ATGTGATGAATGTGAACATGCAT
1 ATGTGATGAATGTGAACATGCAT
* *
68053120 ATGTG-TGATAAG-G-CCGAATGGCCA-
1 ATGTGATGA-ATGTGAAC--AT-G-CAT
68053144 ATGTGATGAATGTGAACATGCAT
1 ATGTGATGAATGTGAACATGCAT
68053167 ATGTG
1 ATGTG
68053172 TGATAAGGTA
Statistics
Matches: 39, Mismatches: 4, Indels: 18
0.64 0.07 0.30
Matches are distributed among these distances:
21 1 0.03
22 6 0.15
23 15 0.38
24 10 0.26
25 6 0.15
26 1 0.03
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATGTGAACATGCAT
Found at i:68054802 original size:40 final size:40
Alignment explanation
Indices: 68054747--68055063 Score: 503
Period size: 40 Copynumber: 8.0 Consensus size: 40
68054737 ATTGAGAGTT
*
68054747 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
*
68054787 ATATATCCGGGCTAAGTCCCGAAGAGCATTAGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
* *
68054827 TTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
*
68054867 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
*
68054907 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCGGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
* *
68054947 TTATATCCGGCCTAAGTCCCGAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
* * *
68054987 TTATATCCGGGCTAAGTCCTGAAGAGCATTAGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
*
68055027 ATATATCCGGGCTAA-ACCTCGAAG-GCATTCGTGCTGG
1 ATATATCCGGGCTAAGTCC-CGAAGAGCATTCGTGCTGG
68055064 AATTATAAGG
Statistics
Matches: 258, Mismatches: 18, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
39 14 0.05
40 244 0.95
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
Found at i:68055129 original size:28 final size:28
Alignment explanation
Indices: 68055098--68055179 Score: 83
Period size: 29 Copynumber: 2.9 Consensus size: 28
68055088 GCTCTTCAAC
* *
68055098 TGAGCACTATGTGTGCCAGATCAGTAGT
1 TGAGCACTATGTGTGCAAGATCAGTAAT
* * **
68055126 TGAGGCACTATGTGTGCGAGTTCTTTAAT
1 TGA-GCACTATGTGTGCAAGATCAGTAAT
* *
68055155 CGAGCACTATGTGTGCAAAATCAGT
1 TGAGCACTATGTGTGCAAGATCAGT
68055180 TAGTGGGCAC
Statistics
Matches: 42, Mismatches: 11, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
28 20 0.48
29 22 0.52
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (28 bp):
TGAGCACTATGTGTGCAAGATCAGTAAT
Found at i:68055160 original size:57 final size:57
Alignment explanation
Indices: 68055071--68055179 Score: 148
Period size: 57 Copynumber: 1.9 Consensus size: 57
68055061 TGGAATTATA
* * *
68055071 AGGCACTGTGTGTGCAAGCTCTTCAACTGAGCACTATGTGTGCCAGATCAGTAGTTG
1 AGGCACTATGTGTGCAAGCTCTTCAACTGAGCACTATGTGTGCAAAATCAGTAGTTG
* * *
68055128 AGGCACTATGTGTGCGAGTTCTTTAA-TCGAGCACTATGTGTGCAAAATCAGT
1 AGGCACTATGTGTGCAAGCTCTTCAACT-GAGCACTATGTGTGCAAAATCAGT
68055180 TAGTGGGCAC
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
56 1 0.02
57 44 0.98
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (57 bp):
AGGCACTATGTGTGCAAGCTCTTCAACTGAGCACTATGTGTGCAAAATCAGTAGTTG
Found at i:68055189 original size:28 final size:28
Alignment explanation
Indices: 68055101--68055190 Score: 76
Period size: 29 Copynumber: 3.2 Consensus size: 28
68055091 CTTCAACTGA
*
68055101 GCACTATGTGTGCCAGATCAG-TAGTTGAG
1 GCACTATGTGTGCAAGATCAGTTAG-TG-G
* * * * *
68055130 GCACTATGTGTGCGAGTTC-TTTAATCGA
1 GCACTATGTGTGCAAGATCAGTTAGT-GG
*
68055158 GCACTATGTGTGCAAAATCAGTTAGTGG
1 GCACTATGTGTGCAAGATCAGTTAGTGG
68055186 GCACT
1 GCACT
68055191 GAGTATGCGA
Statistics
Matches: 47, Mismatches: 11, Indels: 7
0.72 0.17 0.11
Matches are distributed among these distances:
28 23 0.49
29 24 0.51
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTATGTGTGCAAGATCAGTTAGTGG
Found at i:68058934 original size:47 final size:47
Alignment explanation
Indices: 68058881--68059400 Score: 742
Period size: 47 Copynumber: 11.1 Consensus size: 47
68058871 GATTTTATGA
68058881 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
**
68058928 GATGAATGTGAACATGCATATGTGTGATAAGGTAGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
* * * * * *
68058975 GATAAACGTGGAA-GTGTATATATGTGATAAGGCCGAATGGCCAATAT
1 GATGAATGT-GAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
68059022 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
* * * * *
68059069 GATAAACGTGGAA-GTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGT-GAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
68059116 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
* * * * *
68059163 GATAAACGTGGAA-GTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGT-GAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
*
68059210 GATAAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
* * * * *
68059257 GATAAACGTGGAA-GTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGT-GAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
68059304 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
**
68059351 GATGAATGTGAACATGCATATGTGTGATAAGGTAGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
68059398 GAT
1 GAT
68059401 AAAGTGGAAG
Statistics
Matches: 419, Mismatches: 46, Indels: 16
0.87 0.10 0.03
Matches are distributed among these distances:
46 12 0.03
47 395 0.94
48 12 0.03
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.26
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
Found at i:68059010 original size:94 final size:94
Alignment explanation
Indices: 68058898--68059400 Score: 882
Period size: 94 Copynumber: 5.4 Consensus size: 94
68058888 GTGAACATGC
* **
68058898 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGTAG
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
68058963 AATGGCCAATGTGATAAACGTGGAAGTGT
66 AATGGCCAATGTGATAAACGTGGAAGTGT
*
68058992 ATATATGTGATAAGGCCGAATGGCCAATATGATGAATGTGAACATGCATATGTGTGATAAGGCCG
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
68059057 AATGGCCAATGTGATAAACGTGGAAGTGT
66 AATGGCCAATGTGATAAACGTGGAAGTGT
68059086 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
68059151 AATGGCCAATGTGATAAACGTGGAAGTGT
66 AATGGCCAATGTGATAAACGTGGAAGTGT
*
68059180 ATATATGTGATAAGGCCGAATGGCCAATGTGATAAATGTGAACATGCATATGTGTGATAAGGCCG
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
68059245 AATGGCCAATGTGATAAACGTGGAAGTGT
66 AATGGCCAATGTGATAAACGTGGAAGTGT
68059274 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
* * * *
68059339 AATGGCCAATGTGATGAATGT-GAACATGC
66 AATGGCCAATGTGATAAACGTGGAA-GTGT
* **
68059368 ATATGTGTGATAAGGTAGAATGGCCAATGTGAT
1 ATATATGTGATAAGGCCGAATGGCCAATGTGAT
68059401 AAAGTGGAAG
Statistics
Matches: 394, Mismatches: 14, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
93 3 0.01
94 391 0.99
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.26
Consensus pattern (94 bp):
ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
AATGGCCAATGTGATAAACGTGGAAGTGT
Found at i:68059374 original size:23 final size:23
Alignment explanation
Indices: 68059300--68059374 Score: 59
Period size: 23 Copynumber: 3.2 Consensus size: 23
68059290 CGAATGGCCA
68059300 ATGTGATGAATGTGAACATGCAT
1 ATGTGATGAATGTGAACATGCAT
* *
68059323 ATGTG-TGATAAG-G-CCGAATGGCCA-
1 ATGTGATGA-ATGTGAAC--AT-G-CAT
68059347 ATGTGATGAATGTGAACATGCAT
1 ATGTGATGAATGTGAACATGCAT
68059370 ATGTG
1 ATGTG
68059375 TGATAAGGTA
Statistics
Matches: 39, Mismatches: 4, Indels: 18
0.64 0.07 0.30
Matches are distributed among these distances:
21 1 0.03
22 6 0.15
23 15 0.38
24 10 0.26
25 6 0.15
26 1 0.03
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATGTGAACATGCAT
Found at i:68061122 original size:12 final size:12
Alignment explanation
Indices: 68061107--68061131 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
68061097 TTAGATAATG
68061107 AATTTAATATTT
1 AATTTAATATTT
68061119 AATTTAATATTT
1 AATTTAATATTT
68061131 A
1 A
68061132 TGAATCTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
AATTTAATATTT
Found at i:68064161 original size:21 final size:22
Alignment explanation
Indices: 68064120--68064161 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
68064110 ATTTGTTCGA
**
68064120 ATTTAGTTATTGCTATTAAATC
1 ATTTAGTTATTAATATTAAATC
68064142 ATTTAGTTATTAAT-TTAAAT
1 ATTTAGTTATTAATATTAAAT
68064162 TATAATTATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.36, C:0.05, G:0.07, T:0.52
Consensus pattern (22 bp):
ATTTAGTTATTAATATTAAATC
Found at i:68066543 original size:30 final size:30
Alignment explanation
Indices: 68066495--68066553 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
68066485 ACAAAAACAA
**
68066495 AATGAAAAAGAAAATGAGATTGAAAAAGAG
1 AATGAAAAAGAAAATGAGAGAGAAAAAGAG
***
68066525 AATGAAAAAGAGTTTGAGAGAGAAAAAGA
1 AATGAAAAAGAAAATGAGAGAGAAAAAGA
68066554 ATGTGAACAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.61, C:0.00, G:0.25, T:0.14
Consensus pattern (30 bp):
AATGAAAAAGAAAATGAGAGAGAAAAAGAG
Found at i:68066582 original size:17 final size:19
Alignment explanation
Indices: 68066547--68066584 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
68066537 TTTGAGAGAG
68066547 AAAAAGAATGTGAACAAGA
1 AAAAAGAATGTGAACAAGA
*
68066566 AAAAAGAGTG-GAA-AAGA
1 AAAAAGAATGTGAACAAGA
68066583 AA
1 AA
68066585 TTGAGATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 3 0.17
19 9 0.50
ACGTcount: A:0.66, C:0.03, G:0.24, T:0.08
Consensus pattern (19 bp):
AAAAAGAATGTGAACAAGA
Found at i:68068283 original size:12 final size:12
Alignment explanation
Indices: 68068266--68068291 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
68068256 ATAAACTAAG
68068266 TTTTAATTTAGT
1 TTTTAATTTAGT
68068278 TTTTAATTTAGT
1 TTTTAATTTAGT
68068290 TT
1 TT
68068292 GCTACAGCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.69
Consensus pattern (12 bp):
TTTTAATTTAGT
Found at i:68074708 original size:29 final size:29
Alignment explanation
Indices: 68074659--68074740 Score: 85
Period size: 29 Copynumber: 2.9 Consensus size: 29
68074649 GGCCCACTTG
* * * *
68074659 GCCCAA-TCTCATTTATATGGCCTAACAG
1 GCCCAATTCACATTCATATGGCCCAACAA
* *
68074687 GCCTAATTCACATTCATATGGCCCATCAA
1 GCCCAATTCACATTCATATGGCCCAACAA
* *
68074716 GCCCAATTCATATTCATATGCCCCA
1 GCCCAATTCACATTCATATGGCCCA
68074741 TTAGGCCCAA
Statistics
Matches: 44, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
28 5 0.11
29 39 0.89
ACGTcount: A:0.29, C:0.32, G:0.11, T:0.28
Consensus pattern (29 bp):
GCCCAATTCACATTCATATGGCCCAACAA
Found at i:68074741 original size:29 final size:29
Alignment explanation
Indices: 68074691--68074755 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
68074681 TAACAGGCCT
*
68074691 AATTCACATTCATATGGCCCATCAAGCCC
1 AATTCACATTCATATGCCCCATCAAGCCC
* * *
68074720 AATTCATATTCATATGCCCCATTAGGCCC
1 AATTCACATTCATATGCCCCATCAAGCCC
*
68074749 AAATCAC
1 AATTCAC
68074756 CTTTATATTC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.32, C:0.32, G:0.09, T:0.26
Consensus pattern (29 bp):
AATTCACATTCATATGCCCCATCAAGCCC
Found at i:68075001 original size:16 final size:16
Alignment explanation
Indices: 68074976--68075018 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
68074966 GCAGCCAAAC
*
68074976 TTTCGGCTTTTT-GACA
1 TTTCGACTTTTTCG-CA
*
68074992 TTTCGTCTTTTTCGCA
1 TTTCGACTTTTTCGCA
68075008 TTTCGACTTTT
1 TTTCGACTTTT
68075019 GCCGATCTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 23 0.96
17 1 0.04
ACGTcount: A:0.09, C:0.21, G:0.14, T:0.56
Consensus pattern (16 bp):
TTTCGACTTTTTCGCA
Found at i:68079204 original size:29 final size:29
Alignment explanation
Indices: 68079171--68079248 Score: 77
Period size: 29 Copynumber: 2.7 Consensus size: 29
68079161 AATCTGATTT
*
68079171 ATATGG-CCTATCAGGCCCAATTCACATTC
1 ATATGGTCC-ATCAGGCCCAATTAACATTC
* * *
68079200 ATATGGTCCATTAGGGCCAATTAATATTC
1 ATATGGTCCATCAGGCCCAATTAACATTC
** *
68079229 ATATGCACCATTAGGCCCAA
1 ATATGGTCCATCAGGCCCAA
68079249 ATCACCTTTA
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
29 39 0.95
30 2 0.05
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (29 bp):
ATATGGTCCATCAGGCCCAATTAACATTC
Found at i:68079494 original size:16 final size:16
Alignment explanation
Indices: 68079473--68079515 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
68079463 GCAGCCAAAC
*
68079473 TTTCAGCTTTTCGGTA
1 TTTCAGCTTTTCGGCA
68079489 TTTCAGCTTTTCGGCA
1 TTTCAGCTTTTCGGCA
*
68079505 TTTCGGCTTTT
1 TTTCAGCTTTT
68079516 GTCGATCTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.09, C:0.21, G:0.19, T:0.51
Consensus pattern (16 bp):
TTTCAGCTTTTCGGCA
Found at i:68080772 original size:16 final size:16
Alignment explanation
Indices: 68080751--68080781 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
68080741 AAAAATTCAA
68080751 GATTTCGAGATTTTTC
1 GATTTCGAGATTTTTC
*
68080767 GATTTCGGGATTTTT
1 GATTTCGAGATTTTT
68080782 GGGGATTACA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.10, G:0.23, T:0.52
Consensus pattern (16 bp):
GATTTCGAGATTTTTC
Found at i:68089595 original size:26 final size:26
Alignment explanation
Indices: 68089556--68089667 Score: 172
Period size: 26 Copynumber: 4.3 Consensus size: 26
68089546 TGATACAAAT
68089556 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
68089582 TGATAATAGATTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
68089608 TGATAAT-GGCTTAGGTAAATGTTTCA
1 TGATAATAGG-TTAGGTAAATGTTCCA
* *
68089634 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
68089660 TGATAATA
1 TGATAATA
68089668 ATTTCATGTC
Statistics
Matches: 80, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
25 1 0.01
26 77 0.96
27 2 0.03
ACGTcount: A:0.35, C:0.06, G:0.22, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:68091697 original size:137 final size:137
Alignment explanation
Indices: 68091451--68091737 Score: 520
Period size: 137 Copynumber: 2.1 Consensus size: 137
68091441 GAGTAGTCTC
*
68091451 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAT
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
68091516 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
*
68091581 ACTGTTA
131 ACTATTA
68091588 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
68091653 TGTTATCTGAATAAGGGTCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
*
68091718 GCTATTA
131 ACTATTA
**
68091725 CCTGAATGGGCTT
1 CCCAAATGGGCTT
68091738 AGGCCCAATG
Statistics
Matches: 144, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
137 144 1.00
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTATTA
Found at i:68097396 original size:27 final size:26
Alignment explanation
Indices: 68097366--68097541 Score: 163
Period size: 27 Copynumber: 6.5 Consensus size: 26
68097356 AATTGTACAG
68097366 CACTAAGTGTGCGATTTGACTATGTTA
1 CACTAAGTGTGCGATTTGACTATG-TA
** * *
68097393 CACTAAGTGTGCGAAATGAATATGATG
1 CACTAAGTGTGCGATTTGACTATG-TA
* * **
68097420 CACTAAGTGTGCGAATTGACCATGCGG
1 CACTAAGTGTGCGATTTGACTATG-TA
68097447 CACTAAGTGTGCGAGTTTGACTATGTA
1 CACTAAGTGTGCGA-TTTGACTATGTA
* *
68097474 GCACTAAGTGTGCGATTTGATTACGTA
1 -CACTAAGTGTGCGATTTGACTATGTA
* * *
68097501 GCACTAAGTGTGCGAGTTGATTATATA
1 -CACTAAGTGTGCGATTTGACTATGTA
*
68097528 GCACTGAGTGTGCG
1 -CACTAAGTGTGCG
68097542 GACTCAATAT
Statistics
Matches: 127, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
27 105 0.83
28 22 0.17
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (26 bp):
CACTAAGTGTGCGATTTGACTATGTA
Found at i:68097425 original size:54 final size:54
Alignment explanation
Indices: 68097364--68097541 Score: 191
Period size: 54 Copynumber: 3.3 Consensus size: 54
68097354 TAAATTGTAC
*
68097364 AGCACTAAGTGTGCGATTTGACTATGTTACACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATG-TACACTAAGTGTGCGAATTGAATATGAT
* * ** * *
68097419 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATG-TACACTAAGTGTGCGA-ATTGAATATGAT
* * * *
68097473 AGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGATTTGACTATGTA-CACTAAGTGTGCGAATTGAATATGAT
*
68097527 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
68097542 GACTCAATAT
Statistics
Matches: 102, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
54 60 0.59
55 42 0.41
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (54 bp):
AGCACTAAGTGTGCGATTTGACTATGTACACTAAGTGTGCGAATTGAATATGAT
Found at i:68097479 original size:82 final size:81
Alignment explanation
Indices: 68097365--68097520 Score: 226
Period size: 82 Copynumber: 1.9 Consensus size: 81
68097355 AAATTGTACA
*
68097365 GCACTAAGTGTGCGATTTGACTATGTTACACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTTACACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
68097429 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
68097446 GCACTAAGTGTGCGAGTTTGACTATG-TAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGT
1 GCACTAAGTGTGCGA-TTTGACTATGTTA-CACTAAGTGTGCGAAATGAATACGTAGCACTAAGT
*
68097510 GTGCGAGTTGA
64 GTGCGAATTGA
68097521 TTATATAGCA
Statistics
Matches: 67, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
81 17 0.25
82 49 0.73
83 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTTACACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:68097532 original size:82 final size:81
Alignment explanation
Indices: 68097361--68097541 Score: 222
Period size: 82 Copynumber: 2.2 Consensus size: 81
68097351 GATTAAATTG
*
68097361 TACAGCACTAAGTGTGCGATTTGACTATGTTACACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTTACACTAAGTGTGCGAAATGAATACGATGCACTAA
68097426 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
68097442 TGCGGCACTAAGTGTGCGAGTTTGACTATG-TAGCACTAAGTGTGCGATTTGATTACG-TAGCAC
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTTA-CACTAAGTGTGCGAAATGAATACGAT-GCAC
* **
68097505 TAAGTGTGCGAGTTGATTA
63 TAAGTGTGCGAATTGACCA
* *
68097524 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
68097542 GACTCAATAT
Statistics
Matches: 84, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
81 20 0.24
82 64 0.76
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTTACACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:68106682 original size:27 final size:27
Alignment explanation
Indices: 68106651--68106828 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
68106641 TAAATTGTAC
68106651 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
68106678 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
68106704 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
68106732 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
68106760 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
68106787 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
68106814 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
68106829 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:68106765 original size:82 final size:81
Alignment explanation
Indices: 68106652--68106807 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
68106642 AAATTGTACA
* *
68106652 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
68106716 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
68106733 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
68106798 TGCGAGTTGA
65 TGCGAATTGA
68106808 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:68106819 original size:82 final size:81
Alignment explanation
Indices: 68106648--68106828 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
68106638 GATTAAATTG
* *
68106648 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
68106713 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
68106729 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
68106793 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
68106811 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
68106829 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:68108863 original size:17 final size:17
Alignment explanation
Indices: 68108841--68108873 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
68108831 ATATCGATTT
68108841 TGACATCACTATGTCAA
1 TGACATCACTATGTCAA
*
68108858 TGACATCACTTTGTCA
1 TGACATCACTATGTCA
68108874 TGAATCAACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.33
Consensus pattern (17 bp):
TGACATCACTATGTCAA
Found at i:68115740 original size:15 final size:15
Alignment explanation
Indices: 68115720--68115748 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
68115710 ATAAATGTGT
68115720 CGATTTAGTTAGTCC
1 CGATTTAGTTAGTCC
68115735 CGATTTAGTTAGTC
1 CGATTTAGTTAGTC
68115749 TGTCAACAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.17, G:0.21, T:0.41
Consensus pattern (15 bp):
CGATTTAGTTAGTCC
Found at i:68132126 original size:19 final size:19
Alignment explanation
Indices: 68132104--68132140 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
68132094 CCCCTCGGTG
68132104 GCTGAACACCACATCGGCT
1 GCTGAACACCACATCGGCT
*
68132123 GCTGAACACCACCTCGGC
1 GCTGAACACCACATCGGC
68132141 CCATGCCTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.24, C:0.41, G:0.22, T:0.14
Consensus pattern (19 bp):
GCTGAACACCACATCGGCT
Found at i:68150399 original size:79 final size:80
Alignment explanation
Indices: 68150263--68150480 Score: 232
Period size: 79 Copynumber: 2.8 Consensus size: 80
68150253 TCGAATGATG
* * * **
68150263 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAG-TCCCGAAGGCAT
68150326 TAGTGCGAGATACTA-A
64 TAGTGCGAGATACTATA
* *
68150342 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTCCCGAAGGCATT
* *
68150406 TGTGCGAGTTACTATA
65 AGTGCGAGATACTATA
* * ** *
68150422 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATCCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTTAAGTCCCGAAGG
68150481 TACGTGATTC
Statistics
Matches: 117, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 1 0.01
79 74 0.63
80 42 0.36
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTCCCGAAGGCATTA
GTGCGAGATACTATA
Found at i:68150454 original size:40 final size:40
Alignment explanation
Indices: 68150263--68150447 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
68150253 TCGAATGATG
* * * *
68150263 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
68150303 TCCGGACTAAGAT-CCGAAGGCATTAGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
68150343 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
68150382 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
68150423 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
68150448 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 34 0.27
40 81 0.65
41 9 0.07
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:68154498 original size:23 final size:22
Alignment explanation
Indices: 68154468--68154518 Score: 75
Period size: 23 Copynumber: 2.3 Consensus size: 22
68154458 GGACTCACCA
*
68154468 CAGCTCGTATGAGCTTACTGATT
1 CAGCTCGTAAGAGCTTACT-ATT
68154491 CAGCTCGTAAGAGCTTACTATT
1 CAGCTCGTAAGAGCTTACTATT
*
68154513 TAGCTC
1 CAGCTC
68154519 AATAAAGCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
22 8 0.31
23 18 0.69
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.33
Consensus pattern (22 bp):
CAGCTCGTAAGAGCTTACTATT
Found at i:68154527 original size:22 final size:23
Alignment explanation
Indices: 68154468--68154556 Score: 67
Period size: 23 Copynumber: 3.9 Consensus size: 23
68154458 GGACTCACCA
* *
68154468 CAGCTCGTATGAGCTTACTGATT
1 CAGCTCATAAGAGCTTACTGATT
*
68154491 CAGCTCGTAAGAGCTTACT-ATT
1 CAGCTCATAAGAGCTTACTGATT
* * *
68154513 TAGCTCAATAA-AGCTTACCGTTTT
1 CAGCTC-ATAAGAGCTTACTG-ATT
*
68154537 CAGCTTA-ATAGAGCTTACTG
1 CAGCTCATA-AGAGCTTACTG
68154557 TTTATCAGCT
Statistics
Matches: 53, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
22 16 0.30
23 23 0.43
24 14 0.26
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (23 bp):
CAGCTCATAAGAGCTTACTGATT
Found at i:68154546 original size:24 final size:25
Alignment explanation
Indices: 68154514--68154568 Score: 76
Period size: 24 Copynumber: 2.2 Consensus size: 25
68154504 CTTACTATTT
68154514 AGCTCAATAAAGCTTACCGTTT-TC
1 AGCTCAATAAAGCTTACCGTTTATC
* * *
68154538 AGCTTAATAGAGCTTACTGTTTATC
1 AGCTCAATAAAGCTTACCGTTTATC
68154563 AGCTCA
1 AGCTCA
68154569 GGAGGAGCTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
24 19 0.73
25 7 0.27
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.35
Consensus pattern (25 bp):
AGCTCAATAAAGCTTACCGTTTATC
Found at i:68158588 original size:13 final size:13
Alignment explanation
Indices: 68158570--68158603 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
68158560 TAGACAGACG
68158570 CCCGTGTGCCTTA
1 CCCGTGTGCCTTA
68158583 CCCGTGTGCCTTA
1 CCCGTGTGCCTTA
68158596 CCCGTGTG
1 CCCGTGTG
68158604 GCTCCAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.06, C:0.38, G:0.26, T:0.29
Consensus pattern (13 bp):
CCCGTGTGCCTTA
Found at i:68160391 original size:15 final size:15
Alignment explanation
Indices: 68160347--68160394 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 15
68160337 TTTTAACGTA
*
68160347 AAAATAAAAAATAATAT
1 AAAATAAAACAT-A-AT
68160364 AATAATGAAAACATAAT
1 AA-AAT-AAAACATAAT
68160381 AAAATAAAACATAA
1 AAAATAAAACATAA
68160395 GTGAATTTCC
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
15 9 0.32
16 3 0.11
17 6 0.21
18 4 0.14
19 6 0.21
ACGTcount: A:0.73, C:0.04, G:0.02, T:0.21
Consensus pattern (15 bp):
AAAATAAAACATAAT
Found at i:68165289 original size:42 final size:41
Alignment explanation
Indices: 68165226--68165343 Score: 128
Period size: 43 Copynumber: 2.8 Consensus size: 41
68165216 TTAGGGTTAG
* **
68165226 ATGAGATTTCATGTAAAACCATATATGGGATATGACATCGGT
1 ATGAGATTTCATGTAAGACCATAT-TGGGATATGACATCAAT
* *
68165268 ATGAGATTTCATGTAAGACCATAGTTGGGCTATTGGCATCAAT
1 ATGAGATTTCATGTAAGACCATA-TTGGGATA-TGACATCAAT
** *
68165311 ATGAGATCCCATGTAAGACTATATCTGGGATAT
1 ATGAGATTTCATGTAAGACCATAT-TGGGATAT
68165344 AGCATTGGTA
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
42 30 0.47
43 34 0.53
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.31
Consensus pattern (41 bp):
ATGAGATTTCATGTAAGACCATATTGGGATATGACATCAAT
Found at i:68167166 original size:39 final size:39
Alignment explanation
Indices: 68167017--68167167 Score: 248
Period size: 39 Copynumber: 3.9 Consensus size: 39
68167007 GTCCAACACG
*
68167017 TAGCCTGCGGACCTAAAGTCCGGATATAATTCTCGCATA
1 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCATA
* * *
68167056 TAGCCTGCGGACATGAAGTCCAGATATAATTTTCGCATA
1 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCATA
*
68167095 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCTTA
1 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCATA
*
68167134 TAGCCTACGGACCTGAAGTCCGGATATAATTCTC
1 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTC
68167168 ACGTATATAT
Statistics
Matches: 103, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 103 1.00
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (39 bp):
TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCATA
Found at i:68175620 original size:28 final size:29
Alignment explanation
Indices: 68175588--68175702 Score: 146
Period size: 29 Copynumber: 4.0 Consensus size: 29
68175578 TACCTGTATC
* *
68175588 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
68175616 TGGCCCATTAGGCCCAAATCACCTAT-ATA
1 TGGCCCATTAGGCCCAAATCACAT-TCATA
*
68175645 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
68175674 TGGCCCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
68175702 T
1 T
68175703 TCATGCTCAC
Statistics
Matches: 77, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
28 27 0.35
29 49 0.64
30 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.27
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:68175931 original size:8 final size:8
Alignment explanation
Indices: 68175912--68175962 Score: 61
Period size: 8 Copynumber: 6.4 Consensus size: 8
68175902 GTAGCCAAAC
*
68175912 TTTCGACT
1 TTTCGGCT
68175920 TTTCGG-T
1 TTTCGGCT
68175927 ATTTCGGCT
1 -TTTCGGCT
68175936 TTTCGGCT
1 TTTCGGCT
68175944 TTTCGGCAT
1 TTTCGGC-T
68175953 TTT-GGCT
1 TTTCGGCT
68175960 TTT
1 TTT
68175963 ACTGATACAT
Statistics
Matches: 39, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
7 5 0.13
8 29 0.74
9 5 0.13
ACGTcount: A:0.06, C:0.20, G:0.22, T:0.53
Consensus pattern (8 bp):
TTTCGGCT
Found at i:68175939 original size:24 final size:24
Alignment explanation
Indices: 68175912--68175962 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
68175902 GTAGCCAAAC
*
68175912 TTTCGACTTTTCGGTATTTCGGCT
1 TTTCGACTTTTCGGCATTTCGGCT
* *
68175936 TTTCGGCTTTTCGGCATTTTGGCT
1 TTTCGACTTTTCGGCATTTCGGCT
68175960 TTT
1 TTT
68175963 ACTGATACAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.06, C:0.20, G:0.22, T:0.53
Consensus pattern (24 bp):
TTTCGACTTTTCGGCATTTCGGCT
Found at i:68177737 original size:25 final size:28
Alignment explanation
Indices: 68177685--68177738 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 28
68177675 TTATCGCTAT
* *
68177685 TATGTGTTGAATGATTGATTTTGCATAA
1 TATGTGTTGAATGATTGATTATGAATAA
68177713 TATG-GTTGAAT-A-TGATTATGAATAA
1 TATGTGTTGAATGATTGATTATGAATAA
68177738 T
1 T
68177739 GCATGATGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 12 0.50
26 1 0.04
27 7 0.29
28 4 0.17
ACGTcount: A:0.33, C:0.02, G:0.20, T:0.44
Consensus pattern (28 bp):
TATGTGTTGAATGATTGATTATGAATAA
Found at i:68177899 original size:48 final size:48
Alignment explanation
Indices: 68177827--68177993 Score: 194
Period size: 48 Copynumber: 3.5 Consensus size: 48
68177817 TATGTGTGCT
* * *
68177827 AGTGTAAAACCATGTTTGGAACATGGCATCGACAATGTAATGAGAGCT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGACAATGTAATGAGAGCC
* * * * *
68177875 AGCGTAAGACCATGTCTGGGACATGGCATC-ACCCACG-ATATGAGAACC
1 AGTGTAAGACCATGTCTGGAACATGGCATCGA-CAATGTA-ATGAGAGCC
* * *
68177923 ATTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTAATGAGAGCC
1 AGTGTAAGACCATGTCTGGAACATGGCATCGACAATGTAATGAGAGCC
*
68177971 AGTGTAAGACCATGTCTGTAACA
1 AGTGTAAGACCATGTCTGGAACA
68177994 CCCCTTACCC
Statistics
Matches: 96, Mismatches: 19, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
47 2 0.02
48 93 0.97
49 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGAACATGGCATCGACAATGTAATGAGAGCC
Found at i:68179616 original size:47 final size:48
Alignment explanation
Indices: 68179546--68179854 Score: 339
Period size: 47 Copynumber: 6.5 Consensus size: 48
68179536 GTACCAATGA
68179546 CATGTCCAAGACATGGTCTTACA-TGAATCAACATATCATCGCCGATGC
1 CATGTCC-AGACATGGTCTTACACTGAATCAACATATCATCGCCGATGC
*
68179594 CATGTCCAGACATGGTCTTACA-TGAATCCACATATCATCGCCGATGC
1 CATGTCCAGACATGGTCTTACACTGAATCAACATATCATCGCCGATGC
*
68179641 CATGTCCAGACATGGTCTTACA-TGAATCCACATATCATCGCCGATGC
1 CATGTCCAGACATGGTCTTACACTGAATCAACATATCATCGCCGATGC
* ** *
68179688 CATGTCCAGACATGGTCTTACACTTGCA-C-ACATATCATCATCGATGT
1 CATGTCCAGACATGGTCTTACAC-TGAATCAACATATCATCGCCGATGC
* * * * *
68179735 GATGCCCCAGACATGGTCTTACATTG--GCACATATATCATCGCCGATGC
1 CATG-TCCAGACATGGTCTTACACTGAATCA-ACATATCATCGCCGATGC
* * * *
68179783 CATGTCCCAGACATGGCCTTACACTG--GCACACATATAATCACCGATGC
1 CATGT-CCAGACATGGTCTTACACTGAATCA-ACATATCATCGCCGATGC
* *
68179831 CATGTCCCAAAGATGGTCTTACAC
1 CATGT-CCAGACATGGTCTTACAC
68179855 AGGCACTTAT
Statistics
Matches: 232, Mismatches: 22, Indels: 14
0.87 0.08 0.05
Matches are distributed among these distances:
46 1 0.00
47 128 0.55
48 100 0.43
49 3 0.01
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.25
Consensus pattern (48 bp):
CATGTCCAGACATGGTCTTACACTGAATCAACATATCATCGCCGATGC
Found at i:68179756 original size:48 final size:47
Alignment explanation
Indices: 68179546--68179902 Score: 366
Period size: 48 Copynumber: 7.5 Consensus size: 47
68179536 GTACCAATGA
* *
68179546 CATGTCCAAGACATGGTCTTACA-TGAATCAACATATCATCGCCGATGC
1 CATGTCCCAGACATGGTCTTACATTGCA-C-ACATATCATCGCCGATGC
*
68179594 CATGT-CCAGACATGGTCTTACA-TGAATCCACATATCATCGCCGATGC
1 CATGTCCCAGACATGGTCTTACATTGCA--CACATATCATCGCCGATGC
*
68179641 CATGT-CCAGACATGGTCTTACA-TGAATCCACATATCATCGCCGATGC
1 CATGTCCCAGACATGGTCTTACATTGCA--CACATATCATCGCCGATGC
** *
68179688 CATGT-CCAGACATGGTCTTACACTTGCACACATATCATCATCGATGT
1 CATGTCCCAGACATGGTCTTACA-TTGCACACATATCATCGCCGATGC
* * *
68179735 GATGCCCCAGACATGGTCTTACATTGGCACATATATCATCGCCGATGC
1 CATGTCCCAGACATGGTCTTACATT-GCACACATATCATCGCCGATGC
* * * *
68179783 CATGTCCCAGACATGGCCTTACACTGGCACACATATAATCACCGATGC
1 CATGTCCCAGACATGGTCTTACA-TTGCACACATATCATCGCCGATGC
* * ** ** * * *
68179831 CATGTCCCAAAGATGGTCTTACACAGGCACTTATATCATTGTCAATGC
1 CATGTCCCAGACATGGTCTTACA-TTGCACACATATCATCGCCGATGC
*
68179879 GATGTCCCAGACATGGTCTTACAT
1 CATGTCCCAGACATGGTCTTACAT
68179903 AGGTACACTT
Statistics
Matches: 269, Mismatches: 34, Indels: 13
0.85 0.11 0.04
Matches are distributed among these distances:
47 128 0.48
48 137 0.51
49 4 0.01
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (47 bp):
CATGTCCCAGACATGGTCTTACATTGCACACATATCATCGCCGATGC
Found at i:68185149 original size:34 final size:34
Alignment explanation
Indices: 68185106--68185173 Score: 118
Period size: 34 Copynumber: 2.0 Consensus size: 34
68185096 TCCTTAAATT
* *
68185106 TTTTACACATGATGGCTTCGGTAGATACACATTC
1 TTTTACACATGACGGCTTCAGTAGATACACATTC
68185140 TTTTACACATGACGGCTTCAGTAGATACACATTC
1 TTTTACACATGACGGCTTCAGTAGATACACATTC
68185174 CCAAGCGTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (34 bp):
TTTTACACATGACGGCTTCAGTAGATACACATTC
Found at i:68187511 original size:48 final size:48
Alignment explanation
Indices: 68187470--68187757 Score: 348
Period size: 48 Copynumber: 6.0 Consensus size: 48
68187460 TACATGAATC
* *
68187470 CACATATCAGCGCTAATGCCATGTCCCAGACATGGTCTTACACTGGCA
1 CACATATCATCGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCA
* * *
68187518 CAGATATCATCGCTGATGCCATGTCCTAGACATGGTCTTACACTTGCA
1 CACATATCATCGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCA
* * * *
68187566 CACATATCATCGCTGATGCCATATCCCAAACATGGTCTTGCATTGGCA
1 CACATATCATCGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCA
* * * **
68187614 CACATATTATCGCCGATACCATGTCCCAGACATGGTCTTTTACTGGCA
1 CACATATCATCGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCA
*
68187662 CACATATCATCG-TCGATGCCATGTCCCAGACATGGTCTTACA-TAGC-
1 CACATATCATCGCT-GATGCCATGTCCCAGACATGGTCTTACACTGGCA
* * * * *
68187708 CACATATACCATCGTTGATGCCATGTCCCAGGCCTAGTCTTACACAGGCA
1 CACATAT--CATCGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCA
68187758 AATTTAGCAC
Statistics
Matches: 203, Mismatches: 31, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
46 7 0.03
47 3 0.01
48 190 0.94
49 3 0.01
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (48 bp):
CACATATCATCGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCA
Found at i:68192224 original size:42 final size:42
Alignment explanation
Indices: 68192178--68192292 Score: 140
Period size: 43 Copynumber: 2.7 Consensus size: 42
68192168 GACATTAAGG
* * *
68192178 TTGTGTATGACCATATTTGGGATATGGCATCGCTATGAGATT
1 TTGTGTAAGACCATATTTGGGATATGGCATCGATATGAGATC
** *
68192220 TTGTGTAAGACCATAGCTGGGATATTGGAATCGATATGAGATC
1 TTGTGTAAGACCATATTTGGGATA-TGGCATCGATATGAGATC
***
68192263 CCATGTAAGACCATATTTGGGATATGGCAT
1 TTGTGTAAGACCATATTTGGGATATGGCAT
68192293 TGGTATGGTA
Statistics
Matches: 60, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
42 26 0.43
43 34 0.57
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.33
Consensus pattern (42 bp):
TTGTGTAAGACCATATTTGGGATATGGCATCGATATGAGATC
Found at i:68195292 original size:40 final size:40
Alignment explanation
Indices: 68195228--68195322 Score: 113
Period size: 40 Copynumber: 2.4 Consensus size: 40
68195218 ATTATGTTCT
* * * *
68195228 GCACTAAGTGTGTGATTTGAAATAGTTTCGGCTATAAAT-A-
1 GCACTAAGTGTGCGAATTGAAATAGCTTCAGCTAT--ATGAG
*
68195268 GCACTAAGTGTGCGAATTGGAATAGCTTCAGCTATATGAG
1 GCACTAAGTGTGCGAATTGAAATAGCTTCAGCTATATGAG
68195308 GCACTAAGTGTGCGA
1 GCACTAAGTGTGCGA
68195323 TTCCGCGATA
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
38 2 0.04
39 1 0.02
40 45 0.94
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (40 bp):
GCACTAAGTGTGCGAATTGAAATAGCTTCAGCTATATGAG
Found at i:68196434 original size:54 final size:53
Alignment explanation
Indices: 68196350--68196530 Score: 195
Period size: 54 Copynumber: 3.4 Consensus size: 53
68196340 TTAGTTTACC
* * *
68196350 AAATTACCGAAATACCCTT-AGTTTGCAAAATTACTGAAATACCATCAATTTGCA
1 AAATTACCGAAATACCCTTGA-TTT-TAAAATTACTGAAATACCATCGATTTGTA
* * *
68196404 AAATTACTGAAATACCCTTGACTTTTAAAATTAC-CAAAGTACCATCGATTTATA
1 AAATTACCGAAATACCCTTGA-TTTTAAAATTACTGAAA-TACCATCGATTTGTA
* * * *
68196458 AAATTACCGAAATACCGTCGATTGTAAAATTACTGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTTGATTTTAAAATTACTGAAATACCATCGATTTGTA
* **
68196511 GAATTACTAAAATACCCTTG
1 AAATTACCGAAATACCCTTG
68196531 TAGGGTAGAA
Statistics
Matches: 105, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
53 42 0.40
54 59 0.56
55 4 0.04
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (53 bp):
AAATTACCGAAATACCCTTGATTTTAAAATTACTGAAATACCATCGATTTGTA
Found at i:68196517 original size:27 final size:27
Alignment explanation
Indices: 68196350--68196528 Score: 177
Period size: 27 Copynumber: 6.7 Consensus size: 27
68196340 TTAGTTTACC
* * *
68196350 AAATTACCGAAATACCCT-TAGTTTGCA
1 AAATTACTGAAATACCCTCGA-TTTGTA
* * *
68196377 AAATTACTGAAATACCATCAATTTGCA
1 AAATTACTGAAATACCCTCGATTTGTA
*
68196404 AAATTACTGAAATACCCTTGACTTT-TA
1 AAATTACTGAAATACCCTCGA-TTTGTA
* * *
68196431 AAATTAC-CAAAGTACCATCGATTTATA
1 AAATTACTGAAA-TACCCTCGATTTGTA
* *
68196458 AAATTACCGAAATACCGTCGA-TTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
68196484 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
68196511 GAATTACTAAAATACCCT
1 AAATTACTGAAATACCCT
68196529 TGTAGGGTAG
Statistics
Matches: 129, Mismatches: 17, Indels: 12
0.82 0.11 0.08
Matches are distributed among these distances:
26 29 0.22
27 93 0.72
28 7 0.05
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:68196538 original size:27 final size:27
Alignment explanation
Indices: 68196485--68196894 Score: 452
Period size: 27 Copynumber: 15.2 Consensus size: 27
68196475 TCGATTGTAA
* **
68196485 AATTACTGAAATACCCTCG-ATTTGTAG
1 AATTACTGAAATACCCTTGTA-GGGTAG
*
68196512 AATTACTAAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* * *
68196539 AAATACCGAAATACCC-TATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* *
68196565 AATTACCGAAATACCCTTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* *
68196592 AATTACCGAAATACCCTTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* * *
68196619 AAATA-TCGAAATACCCATATAGGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAG
* * *
68196646 AATTACTAAAATA-CCTCTATAAGGTAG
1 AATTACTGAAATACCCT-TGTAGGGTAG
* * *
68196673 AATTACTAAAATACCCCTGTAGGGTAA
1 AATTACTGAAATACCCTTGTAGGGTAG
*
68196700 AATTACTGAAATACCCTTGTATGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
*
68196727 AAATAAC-GAAATACCCTTGTAGGGTAG
1 -AATTACTGAAATACCCTTGTAGGGTAG
*
68196754 AATTACTGAAATACCCTTGTAGGTTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* * *
68196781 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* *
68196808 AATTACTAAAATACCCTTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
*
68196835 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* * * *
68196862 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACTGAAATACCCTTGTAGGGTAG
68196889 AATTAC
1 AATTAC
68196895 CATTTTACCC
Statistics
Matches: 330, Mismatches: 45, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
26 31 0.09
27 290 0.88
28 9 0.03
ACGTcount: A:0.38, C:0.17, G:0.18, T:0.27
Consensus pattern (27 bp):
AATTACTGAAATACCCTTGTAGGGTAG
Found at i:68196887 original size:81 final size:81
Alignment explanation
Indices: 68196508--68196894 Score: 503
Period size: 81 Copynumber: 4.8 Consensus size: 81
68196498 CCCTCGATTT
* * *
68196508 GTAGAATTACTAAAATACCCTTGTAGGGTAGAAATACCGAAATACCC-TATAGGGTAGAATTACC
1 GTAGAATTACTGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTAGAATTACT
*
68196572 GAAATACCCTTATAGG
66 AAAATACCCTTATAGG
* * * * *
68196588 GTAGAATTACCGAAATACCCTTATAGGGTAGAAATATCGAAATACCCATATAGGGTAGAATTACT
1 GTAGAATTACTGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTAGAATTACT
*
68196653 AAAATA-CCTCTATAAG
66 AAAATACCCT-TATAGG
* * * * *
68196669 GTAGAATTACTAAAATACCCCTGTAGGGTA-AAATTACTGAAATACCCTTGTATGGTAGAAATAA
1 GTAGAATTACTGAAATACCCTTGTAGGGTAGAAA-TACCGAAATACCCTTGTAGGGTAG-AATTA
* *
68196733 C-GAAATACCCTTGTAGG
64 CTAAAATACCCTTATAGG
* *
68196750 GTAGAATTACTGAAATACCCTTGTAGGTTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACT
1 GTAGAATTACTGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTAGAATTACT
68196815 AAAATACCCTTATAGG
66 AAAATACCCTTATAGG
* * * * *
68196831 GTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAGATACCCTTGTGGGGTAAAATTAC
1 GTAGAATTACTGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTAGAATTAC
68196895 CATTTTACCC
Statistics
Matches: 264, Mismatches: 36, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
80 54 0.20
81 199 0.75
82 11 0.04
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.26
Consensus pattern (81 bp):
GTAGAATTACTGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTAGAATTACT
AAAATACCCTTATAGG
Found at i:68196903 original size:27 final size:27
Alignment explanation
Indices: 68196873--68196938 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
68196863 ATTACCGAGA
*
68196873 TACCCTTGTGGGGTAAAATTACCATTT
1 TACCCTTGTGGGGTAAAATGACCATTT
* * *
68196900 TACCCTTAG-GGTGTTAAATGACTATTT
1 TACCCTT-GTGGGGTAAAATGACCATTT
*
68196927 TGCCCTTGTGGG
1 TACCCTTGTGGG
68196939 CAAGTGACTG
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
26 1 0.03
27 29 0.94
28 1 0.03
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.38
Consensus pattern (27 bp):
TACCCTTGTGGGGTAAAATGACCATTT
Found at i:68197128 original size:27 final size:26
Alignment explanation
Indices: 68197098--68197180 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
68197088 TGGAGGAAGC
68197098 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
*
68197125 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * * *
68197151 GTATCTGGTGACTTTGTCATAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
68197178 GTT
1 GTT
68197181 GACCGATCGA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 10 0.20
27 40 0.80
ACGTcount: A:0.19, C:0.20, G:0.22, T:0.39
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:68197271 original size:20 final size:20
Alignment explanation
Indices: 68197224--68197271 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
68197214 CAAAGGCTGT
* *
68197224 GTGCCGTTATTGTGGGCTTC
1 GTGCCGATATTGTAGGCTTC
**
68197244 GTATCGATATTGTAGGCTTC
1 GTGCCGATATTGTAGGCTTC
68197264 GTGCCGAT
1 GTGCCGAT
68197272 TATAGACCCG
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.12, C:0.19, G:0.31, T:0.38
Consensus pattern (20 bp):
GTGCCGATATTGTAGGCTTC
Found at i:68197398 original size:98 final size:98
Alignment explanation
Indices: 68197191--68197384 Score: 334
Period size: 98 Copynumber: 2.0 Consensus size: 98
68197181 GACCGATCGA
* * *
68197191 TGGTCGAGTGCCGATCATGTTACCAAAGGCTGTGTGCCGTTATTGTGGGCTTCGTATCGATATTG
1 TGGTTGAGTGCCGATCATGTTACCAAAGGCTGTGTGCCATTATTGTGGGCTTCATATCGATATTG
68197256 TAGGCTTCGTGCCGATTATAGACCCGTTATCAG
66 TAGGCTTCGTGCCGATTATAGACCCGTTATCAG
*
68197289 TGGTTGAGTGCCGATCATGTTACCGAAGGCTGTGTGCCATTATTGTGGGCTTCATATCGATATTG
1 TGGTTGAGTGCCGATCATGTTACCAAAGGCTGTGTGCCATTATTGTGGGCTTCATATCGATATTG
* *
68197354 TGGGGTTCGTGCCGATTATAGACCCGTTATC
66 TAGGCTTCGTGCCGATTATAGACCCGTTATC
68197385 GATGGCTTTG
Statistics
Matches: 90, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 90 1.00
ACGTcount: A:0.18, C:0.20, G:0.29, T:0.34
Consensus pattern (98 bp):
TGGTTGAGTGCCGATCATGTTACCAAAGGCTGTGTGCCATTATTGTGGGCTTCATATCGATATTG
TAGGCTTCGTGCCGATTATAGACCCGTTATCAG
Found at i:68197465 original size:23 final size:23
Alignment explanation
Indices: 68197422--68197465 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
68197412 AGTGGCTTTG
* *
68197422 CCACATTATCTGATTCTGGTGGC
1 CCACAATATCTGATTCCGGTGGC
68197445 CCACAATATCTG-TATCCGGTG
1 CCACAATATCTGAT-TCCGGTG
68197466 ACTCTGTCAC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 1 0.06
23 17 0.94
ACGTcount: A:0.20, C:0.27, G:0.20, T:0.32
Consensus pattern (23 bp):
CCACAATATCTGATTCCGGTGGC
Found at i:68206430 original size:79 final size:81
Alignment explanation
Indices: 68206328--68206512 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
68206318 GCTACTCATT
* * *
68206328 CAAATGCCTTCGGGTCATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
68206391 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
68206408 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
68206472 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
*
68206488 CAAA-GCCTTTGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
68206513 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:68206445 original size:39 final size:40
Alignment explanation
Indices: 68206328--68206512 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
68206318 GCTACTCATT
* *
68206328 CAAATGCCTTCGGGTCATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
68206368 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
68206408 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
68206447 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
68206488 CAAA-GCCTTTGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
68206513 CATCATTCGA
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.26
40 77 0.62
41 13 0.10
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:68207707 original size:56 final size:56
Alignment explanation
Indices: 68207640--68207759 Score: 222
Period size: 56 Copynumber: 2.1 Consensus size: 56
68207630 TATTAGTTTA
68207640 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTGTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTGTCATGACATGTT
* *
68207696 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTGTCATGACATGTT
68207752 TTGCCCAT
1 TTGCCCAT
68207760 CATTCCTTGT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 62 1.00
ACGTcount: A:0.23, C:0.23, G:0.10, T:0.44
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTGTCATGACATGTT
Found at i:68208353 original size:16 final size:15
Alignment explanation
Indices: 68208326--68208364 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
68208316 AGAGAGCAAG
*
68208326 GGAAAGAAAGAAGGAA
1 GGAAA-AAAGAAAGAA
68208342 GGACAAAAAGAAAGAA
1 GGA-AAAAAGAAAGAA
68208358 GGAAAAA
1 GGAAAAA
68208365 GGGAAAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 4 0.19
16 15 0.71
17 2 0.10
ACGTcount: A:0.67, C:0.03, G:0.31, T:0.00
Consensus pattern (15 bp):
GGAAAAAAGAAAGAA
Found at i:68210285 original size:46 final size:46
Alignment explanation
Indices: 68210230--68210689 Score: 620
Period size: 46 Copynumber: 10.0 Consensus size: 46
68210220 AGTGTGCTCT
*
68210230 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCCTGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
68210276 CTAATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
68210322 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
68210368 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* **
68210414 GTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * **
68210460 GTG-CATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
68210505 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGTCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ** *
68210551 GTGATATGAAATGAATAA-ACCATGGTTGAAACATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * ** * *
68210596 GTGACATGAAAAGAATAAAACCATGGTTGAAATATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
68210642 ATGATA-GAAAATGAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATG--T--GTAAGACCATGGTTGAAAGATACCATGGCA
68210690 TCATGTCAAA
Statistics
Matches: 375, Mismatches: 32, Indels: 10
0.90 0.08 0.02
Matches are distributed among these distances:
45 84 0.22
46 267 0.71
50 24 0.06
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:68210543 original size:137 final size:138
Alignment explanation
Indices: 68210230--68210689 Score: 692
Period size: 137 Copynumber: 3.3 Consensus size: 138
68210220 AGTGTGCTCT
* * * **
68210230 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCCTGGCAACCTAATATGAAATGTGTAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAATAAG
* * * **
68210295 ACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACC
66 ACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACC
68210360 ATGGCAAC
131 ATGGCAAC
68210368 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAATAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAATAAG
68210433 ACCATGGTTGAAAGATACCATGGCAACGTG-CATGAAAAGAATAAGACCATGGTTGAAAGATACC
66 ACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACC
68210497 ATGGCAAC
131 ATGGCAAC
*
68210505 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGTCAACGTGATATGAAATGAATAA-
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAATAAG
* * *
68210569 ACCATGGTTGAAACATACCATGGCAACGTGACATGAAAAGAATAAAACCATGGTTGAAATATACC
66 ACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACC
68210634 ATGGCAAC
131 ATGGCAAC
* * * *
68210642 ATGATA-GAAAATGAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATG--T--GTAAGACCATGGTTGAAAGATACCATGGCA
68210690 TCATGTCAAA
Statistics
Matches: 297, Mismatches: 19, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
136 30 0.10
137 151 0.51
138 89 0.30
139 1 0.00
141 26 0.09
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (138 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAATAAG
ACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACC
ATGGCAAC
Found at i:68210647 original size:91 final size:92
Alignment explanation
Indices: 68210230--68210689 Score: 602
Period size: 91 Copynumber: 5.0 Consensus size: 92
68210220 AGTGTGCTCT
** * * **
68210230 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCCTGGCAACCTAATATGAAATGTGTAAG
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAATAAG
68210295 ACCATGGTTGAAAGATACCATGGCAAC
66 ACCATGGTTGAAAGATACCATGGCAAC
** **
68210322 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAATAAG
68210387 ACCATGGTTGAAAGATACCATGGCAAC
66 ACCATGGTTGAAAGATACCATGGCAAC
* * * *
68210414 GTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTG-CATGAAAAGAATAAG
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAATAAG
68210478 ACCATGGTTGAAAGATACCATGGCAAC
66 ACCATGGTTGAAAGATACCATGGCAAC
** * *
68210505 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGTCAACGTGATATGAAATGAATAA-
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAATAAG
*
68210569 ACCATGGTTGAAACATACCATGGCAAC
66 ACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
68210596 GTGACATGAAAAGAATAAAACCATGGTTGAAATATACCATGGCAACATGATA-GAAAATGAATGA
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG-AAATG-A--A
* * *
68210660 GTAAGACCATAGTTGAAAGACACTATGGCA
62 -TAAGACCATGGTTGAAAGATACCATGGCA
68210690 TCATGTCAAA
Statistics
Matches: 331, Mismatches: 30, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
90 1 0.00
91 157 0.47
92 148 0.45
94 1 0.00
95 3 0.01
96 21 0.06
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (92 bp):
CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAATAAG
ACCATGGTTGAAAGATACCATGGCAAC
Found at i:68213867 original size:185 final size:188
Alignment explanation
Indices: 68213555--68213981 Score: 752
Period size: 185 Copynumber: 2.3 Consensus size: 188
68213545 GAAATGATAG
68213555 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAC
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAC
*
68213620 GTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAATGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTG
*
68213685 TATATGTGTGATAAGGCCTAATAGCCGA-GTGATGAATGTGAAA-TGTAT-TGTGTGA
131 TATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
68213740 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATGTGTGTGATAAGGCCTAATAGCCGAC
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAC
*
68213805 GTGATGAATGTGAAAATGTATGTGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAATGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTG
*
68213870 TATGTGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
131 TATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * *
68213928 TAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATATATGTGACAAGGCC
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCC
68213982 GAGTGGCCAA
Statistics
Matches: 229, Mismatches: 10, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
185 154 0.67
186 15 0.07
187 5 0.02
188 55 0.24
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.28
Consensus pattern (188 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAC
GTGATGAATGTGAAAATGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTG
TATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:68214010 original size:47 final size:47
Alignment explanation
Indices: 68213555--68213981 Score: 734
Period size: 47 Copynumber: 9.1 Consensus size: 47
68213545 GAAATGATAG
*
68213555 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
68213602 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
68213649 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
68213696 TAAGGCCTAATAGCCGA-GTGATGAATGTGAAA-TGTAT-TGTGTGA
1 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
* *
68213740 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATGTGTGTGA
1 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
* *
68213787 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAATGTATGTGTGTGA
1 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
*
68213834 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATGTGTGTGA
1 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
* *
68213881 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
* *
68213928 TAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
*
68213975 CAAGGCC
1 TAAGGCC
68213982 GAGTGGCCAA
Statistics
Matches: 367, Mismatches: 10, Indels: 6
0.96 0.03 0.02
Matches are distributed among these distances:
44 24 0.07
45 20 0.05
46 20 0.05
47 303 0.83
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
Found at i:68214201 original size:37 final size:37
Alignment explanation
Indices: 68214144--68214222 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
68214134 CCGAGCTCTA
* * *
68214144 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
**
68214181 AAGACCCGATAACTTTGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
68214218 AAGAC
1 AAGAC
68214223 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:68216511 original size:21 final size:21
Alignment explanation
Indices: 68216485--68216530 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
68216475 CAGGTCACAC
68216485 GCCCGTGTGGAAGGGCAACAT
1 GCCCGTGTGGAAGGGCAACAT
*
68216506 GCCCGTGTGGAAGGGTAACAT
1 GCCCGTGTGGAAGGGCAACAT
68216527 GCCC
1 GCCC
68216531 ATGTCCCACA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.22, C:0.26, G:0.37, T:0.15
Consensus pattern (21 bp):
GCCCGTGTGGAAGGGCAACAT
Found at i:68217612 original size:47 final size:46
Alignment explanation
Indices: 68217558--68217733 Score: 196
Period size: 47 Copynumber: 3.8 Consensus size: 46
68217548 TAAGGTGCCA
* * *
68217558 ATGCCATGTCCCAGACATGGTCTTACACTTGCGCATATCTCAAGTCG
1 ATGCCATGTCCCAGACAT-GTCTTACACTAGCTCATATCTCAAGCCG
* * * **
68217605 ATGCCATGTCCCAGATATGGTCTTACACT-G-ACACATCTTGTAGCCG
1 ATGCCATGTCCCAGACAT-GTCTTACACTAGCTCATATC-TCAAGCCG
* * *
68217651 GTG-CATGTCCCGGACATGTCTTACACTAGCTCTTATCTCAATGCCG
1 ATGCCATGTCCCAGACATGTCTTACACTAGCTCATATCTCAA-GCCG
68217697 ATGCCATGTCCCAGACATGTCTTACACTAGCTCATAT
1 ATGCCATGTCCCAGACATGTCTTACACTAGCTCATAT
68217734 ACCTGACCCA
Statistics
Matches: 107, Mismatches: 17, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
44 10 0.09
45 20 0.19
46 18 0.17
47 59 0.55
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.29
Consensus pattern (46 bp):
ATGCCATGTCCCAGACATGTCTTACACTAGCTCATATCTCAAGCCG
Found at i:68224808 original size:46 final size:47
Alignment explanation
Indices: 68224558--68224929 Score: 262
Period size: 46 Copynumber: 7.9 Consensus size: 47
68224548 TGGGTAAGGT
* * *
68224558 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC--ACATATCTCAA
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTTACATCT-TGAG
* * * * *
68224605 GTCGATGCCATGTCCCAAACATGGTCTTACATTGAC-TATCATCATCGAG
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTTA-CATC-TTGAG
* * * * * *
68224654 GCCGACGCCATGTCCTAGACAAGGTCTTACATTGGCTCTCACATATTTG-T
1 GCCGATGCCATGTCCCAGAC-ATGTCTTACACTGGCT-T-ACAT-CTTGAG
* * * *
68224704 GCTGATGCCATGTCCTAGACATGGTCTTACACTGAC--ACATCTCGTA-
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTTACATCTTG-AG
* *
68224750 GCCGATG-CATGTCCCAGACATGTCTTACATTGGCTTACGTCTTGAG
1 GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTTACATCTTGAG
* * * ** *
68224796 GCCGATG-CATGTCCCAGACATGTCTTACACTAGCTTTCGTCTCAAT
1 GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTTACATCTTGAG
** *
68224842 GCCGATGCCATGTCCCAGACATGATCTTACACTGGCTCT-CATAATGTG
1 GCCGATGCCATGTCCCAGACATG-TCTTACACTGGCT-TACATCTTGAG
* * *
68224890 GCTGATG-CATGTCCCAGACATGTCTTACACTAGCTCACAT
1 GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTTACAT
68224930 ATATGACCCA
Statistics
Matches: 260, Mismatches: 47, Indels: 37
0.76 0.14 0.11
Matches are distributed among these distances:
44 11 0.04
45 16 0.06
46 78 0.30
47 62 0.24
48 21 0.08
49 34 0.13
50 31 0.12
51 6 0.02
52 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTTACATCTTGAG
Found at i:68224870 original size:94 final size:92
Alignment explanation
Indices: 68224750--68224924 Score: 262
Period size: 94 Copynumber: 1.9 Consensus size: 92
68224740 ACATCTCGTA
* * **
68224750 GCCGATGCATGTCCCAGACATGTCTTACATTGGCT-TACGTCTTGAGGCCGATGCATGTCCCAGA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATAATGAGGCCGATGCATGTCCCAGA
68224814 CATGTCTTACACTAGCTTTCGTCTCAAT
65 CATGTCTTACACTAGCTTTCGTCTCAAT
* *
68224842 GCCGATGCCATGTCCCAGACATGATCTTACACTGGCTCTCATAATGTGGCTGATGCATGTCCCAG
1 GCCGATG-CATGTCCCAGACATG-TCTTACACTGGCTCTCATAATGAGGCCGATGCATGTCCCAG
68224907 ACATGTCTTACACTAGCT
64 ACATGTCTTACACTAGCT
68224925 CACATATATG
Statistics
Matches: 74, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
92 7 0.09
93 15 0.20
94 51 0.69
95 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.29
Consensus pattern (92 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAATGAGGCCGATGCATGTCCCAGAC
ATGTCTTACACTAGCTTTCGTCTCAAT
Found at i:68227817 original size:32 final size:32
Alignment explanation
Indices: 68227781--68227844 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
68227771 CAATTATAAA
*
68227781 ATTGTATACATACCTTTCCATTAACCTTTACT
1 ATTGTATACATACCTTGCCATTAACCTTTACT
68227813 ATTGTATACATACCTTGCCATTAACCTTTACT
1 ATTGTATACATACCTTGCCATTAACCTTTACT
68227845 TACCCATTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.28, C:0.25, G:0.05, T:0.42
Consensus pattern (32 bp):
ATTGTATACATACCTTGCCATTAACCTTTACT
Found at i:68230184 original size:43 final size:42
Alignment explanation
Indices: 68230137--68230218 Score: 103
Period size: 42 Copynumber: 1.9 Consensus size: 42
68230127 TGTTACGTGT
*
68230137 AATCAAATATTGATGCC-ACTGTCCCAAACAGGGTCTTACACAA
1 AATCAAATA-CGATGCCAAC-GTCCCAAACAGGGTCTTACACAA
* **
68230180 AATCAAATACGATGCCAACGTCCCAGACCTGGTCTTACA
1 AATCAAATACGATGCCAACGTCCCAAACAGGGTCTTACA
68230219 TGTAAACCAT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
42 23 0.68
43 11 0.32
ACGTcount: A:0.35, C:0.28, G:0.15, T:0.22
Consensus pattern (42 bp):
AATCAAATACGATGCCAACGTCCCAAACAGGGTCTTACACAA
Found at i:68230214 original size:42 final size:42
Alignment explanation
Indices: 68230101--68230218 Score: 112
Period size: 43 Copynumber: 2.8 Consensus size: 42
68230091 TGGAAAGCTC
* * * ****
68230101 ATACAATGCCAACGTCCCAGACGTGGTGTTACGTGTAATCAA
1 ATACGATGCCAACGTCCCAGACATGGTCTTACACAAAATCAA
* * *
68230143 ATATTGATGCC-ACTGTCCCAAACAGGGTCTTACACAAAATCAA
1 ATA-CGATGCCAAC-GTCCCAGACATGGTCTTACACAAAATCAA
*
68230186 ATACGATGCCAACGTCCCAGACCTGGTCTTACA
1 ATACGATGCCAACGTCCCAGACATGGTCTTACA
68230219 TGTAAACCAT
Statistics
Matches: 59, Mismatches: 14, Indels: 6
0.75 0.18 0.08
Matches are distributed among these distances:
42 28 0.47
43 31 0.53
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (42 bp):
ATACGATGCCAACGTCCCAGACATGGTCTTACACAAAATCAA
Found at i:68233710 original size:23 final size:21
Alignment explanation
Indices: 68233684--68233727 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
68233674 GGTATTTCAA
68233684 TATGAATGCATAAATGTATGTGT
1 TATGAATG-ATAAATG-ATGTGT
*
68233707 TATGCATGATAAATGATGTGT
1 TATGAATGATAAATGATGTGT
68233728 ATTTATCGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 6 0.30
22 7 0.35
23 7 0.35
ACGTcount: A:0.34, C:0.05, G:0.23, T:0.39
Consensus pattern (21 bp):
TATGAATGATAAATGATGTGT
Found at i:68239766 original size:38 final size:38
Alignment explanation
Indices: 68239715--68240063 Score: 509
Period size: 38 Copynumber: 9.1 Consensus size: 38
68239705 ATATTCGATG
* * *
68239715 TATATTCGGGTTAAATCCCGCAGGCTTTGTGCTGGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* *
68239753 TATATCTGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
68239791 TATATCAGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* *
68239829 TATATCCGGATTAAATCCCGCAGGCTTCGTGCTGGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
68239867 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
68239905 TATATCCGGGTTAAACCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * * *
68239943 TATATCTGGGCTTAAAGACCCGCAGGCTTCGTGTTGGTAA
1 TATATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAT
* *
68239983 AATATCCGGGTTAAATCCCGCAGACTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * * *
68240021 TATATCCGAGATAAATCCCGCAGGCCTAGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
68240059 TATAT
1 TATAT
68240064 TCAAGCCTTC
Statistics
Matches: 282, Mismatches: 27, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
38 244 0.87
39 10 0.04
40 28 0.10
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
Found at i:68248810 original size:27 final size:27
Alignment explanation
Indices: 68248780--68248957 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
68248770 ATATTGAGTC
* * * *
68248780 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
68248807 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
68248834 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
68248862 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
68248889 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
68248916 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
68248943 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
68248958 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:68248919 original size:82 final size:81
Alignment explanation
Indices: 68248801--68248956 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
68248791 TGCTATATAA
* *
68248801 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
68248866 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
68248883 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
68248947 CACTTAGTGC
65 CACTTAGTGC
68248957 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:68254632 original size:20 final size:20
Alignment explanation
Indices: 68254589--68254636 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
68254579 ACTGTTTTGT
68254589 TATGGGCCAACTGTATTGAA
1 TATGGGCCAACTGTATTGAA
*
68254609 -ATGGGCCCAACTGTGTT-AA
1 TATGGG-CCAACTGTATTGAA
68254628 TAT-GGCCAA
1 TATGGGCCAA
68254637 GGCCCAATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
18 4 0.16
19 9 0.36
20 12 0.48
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (20 bp):
TATGGGCCAACTGTATTGAA
Found at i:68258427 original size:44 final size:44
Alignment explanation
Indices: 68258372--68258460 Score: 160
Period size: 44 Copynumber: 2.0 Consensus size: 44
68258362 CACTTCAAAT
* *
68258372 GTATGCTTCGGGCCTCGTAAGCCTATATAATGGACAAAATGATG
1 GTATGCTTCGGGCCTCGTAAGCCCATATAAGGGACAAAATGATG
68258416 GTATGCTTCGGGCCTCGTAAGCCCATATAAGGGACAAAATGATG
1 GTATGCTTCGGGCCTCGTAAGCCCATATAAGGGACAAAATGATG
68258460 G
1 G
68258461 AATTGAAATT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (44 bp):
GTATGCTTCGGGCCTCGTAAGCCCATATAAGGGACAAAATGATG
Found at i:68260542 original size:41 final size:40
Alignment explanation
Indices: 68260496--68260590 Score: 120
Period size: 41 Copynumber: 2.4 Consensus size: 40
68260486 CCTGAATTCA
* * *
68260496 ACATACGTGCCCCTATTTGTTCTTTGGTACCCTCT-AATTGC
1 ACATACGTGCCCCTATTTGTACTTCGGT-CCC-CTGAATAGC
*
68260537 ACATACGTGCCCCTGTTTGTACTTCGGTCCCCTGAATAGC
1 ACATACGTGCCCCTATTTGTACTTCGGTCCCCTGAATAGC
*
68260577 ACATATGTGCCCCT
1 ACATACGTGCCCCT
68260591 GTTTACACTC
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
39 2 0.04
40 21 0.44
41 25 0.52
ACGTcount: A:0.18, C:0.32, G:0.17, T:0.34
Consensus pattern (40 bp):
ACATACGTGCCCCTATTTGTACTTCGGTCCCCTGAATAGC
Found at i:68260590 original size:40 final size:41
Alignment explanation
Indices: 68260496--68260594 Score: 130
Period size: 40 Copynumber: 2.4 Consensus size: 41
68260486 CCTGAATTCA
* * * *
68260496 ACATACGTGCCCCTATTTGTTCTTTGGTACCCTCTAATTGC
1 ACATACGTGCCCCTGTTTGTACTTCGGTACCCTCTAATAGC
68260537 ACATACGTGCCCCTGTTTGTACTTCGGT-CCC-CTGAATAGC
1 ACATACGTGCCCCTGTTTGTACTTCGGTACCCTCT-AATAGC
*
68260577 ACATATGTGCCCCTGTTT
1 ACATACGTGCCCCTGTTT
68260595 ACACTCTAGT
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
39 2 0.04
40 25 0.48
41 25 0.48
ACGTcount: A:0.17, C:0.30, G:0.17, T:0.35
Consensus pattern (41 bp):
ACATACGTGCCCCTGTTTGTACTTCGGTACCCTCTAATAGC
Found at i:68262739 original size:45 final size:44
Alignment explanation
Indices: 68262623--68262740 Score: 121
Period size: 47 Copynumber: 2.6 Consensus size: 44
68262613 ATACATGCGT
* * *
68262623 ATTCATAGAAAAAGATTCATAGACATGGCAGATTCATACATGTGA
1 ATTCATAGAAAAAGATTCATATATATAGCAGATTCATA-ATGTGA
* **
68262668 ACTCATAGAAAATTATTCATATATATATAGCAGATTCAT-ATGTGCAA
1 ATTCATAGAAAAAGATTC--ATATATATAGCAGATTCATAATGTG--A
*
68262715 ATTCATAGAAAACGATTCATATATAT
1 ATTCATAGAAAAAGATTCATATATAT
68262741 GGTGAACTCG
Statistics
Matches: 60, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
45 28 0.47
47 32 0.53
ACGTcount: A:0.43, C:0.13, G:0.13, T:0.31
Consensus pattern (44 bp):
ATTCATAGAAAAAGATTCATATATATAGCAGATTCATAATGTGA
Found at i:68262815 original size:45 final size:45
Alignment explanation
Indices: 68262721--68262816 Score: 111
Period size: 45 Copynumber: 2.1 Consensus size: 45
68262711 GCAAATTCAT
* * * *
68262721 AGAAAACGATTCATATATATGGTGAACTCGTTCATATAGATTCAT
1 AGAAAACGATTCATATATATGGCGAACTCGTACATATAGACTCAG
* ** * *
68262766 AGAAAATGATTCATATATATGGCGGGCTCGTACATGTGGACTCAG
1 AGAAAACGATTCATATATATGGCGAACTCGTACATATAGACTCAG
68262811 AGAAAA
1 AGAAAA
68262817 AACTTCATAT
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.28
Consensus pattern (45 bp):
AGAAAACGATTCATATATATGGCGAACTCGTACATATAGACTCAG
Found at i:68263167 original size:23 final size:25
Alignment explanation
Indices: 68263141--68263191 Score: 61
Period size: 23 Copynumber: 2.1 Consensus size: 25
68263131 AGGATTACAG
* *
68263141 ATTAGAGAAACT-ATTA-TAAATTA
1 ATTAGAGAAAATAATTACTAAACTA
*
68263164 ATTATAGAAAATAATTACTAAACTA
1 ATTAGAGAAAATAATTACTAAACTA
68263189 ATT
1 ATT
68263192 GAGTCACAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 10 0.43
24 4 0.17
25 9 0.39
ACGTcount: A:0.53, C:0.06, G:0.06, T:0.35
Consensus pattern (25 bp):
ATTAGAGAAAATAATTACTAAACTA
Done.