Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 21 of 356
Found at i:7155395 original size:29 final size:29
Alignment explanation
Indices: 7155362--7155425 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 29
7155352 CCAAATTAAA
7155362 CACCCCACTAAACCGA-CCACTAACTCCAT
1 CACCCCACTAAACC-ATCCACTAACTCCAT
* *
7155391 CACCCTACTAAACCATCCACTACCTCCAT
1 CACCCCACTAAACCATCCACTAACTCCAT
7155420 CACCCC
1 CACCCC
7155426 CACACCCTAC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
28 1 0.03
29 30 0.97
ACGTcount: A:0.31, C:0.52, G:0.02, T:0.16
Consensus pattern (29 bp):
CACCCCACTAAACCATCCACTAACTCCAT
Found at i:7155438 original size:37 final size:37
Alignment explanation
Indices: 7155391--7155502 Score: 224
Period size: 37 Copynumber: 3.0 Consensus size: 37
7155381 CTAACTCCAT
7155391 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
1 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
7155428 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
1 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
7155465 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
1 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
7155502 C
1 C
7155503 TAACTCCATC
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 75 1.00
ACGTcount: A:0.29, C:0.54, G:0.00, T:0.16
Consensus pattern (37 bp):
CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
Found at i:7155504 original size:18 final size:18
Alignment explanation
Indices: 7155407--7155516 Score: 75
Period size: 18 Copynumber: 6.0 Consensus size: 18
7155397 ACTAAACCAT
7155407 CCACTACCTCCATCACCC
1 CCACTACCTCCATCACCC
* * *
7155425 CCAC-ACC-CTACTAAACCAT
1 CCACTACCTCCA-T-CACC-C
7155444 CCACTACCTCCATCACCC
1 CCACTACCTCCATCACCC
* * *
7155462 CCAC-ACC-CTACTAAACCAT
1 CCACTACCTCCA-T-CACC-C
7155481 CCACTACCTCCATCACCC
1 CCACTACCTCCATCACCC
*
7155499 CCACTAACTCCATCACCC
1 CCACTACCTCCATCACCC
7155517 TACTTGTTAT
Statistics
Matches: 69, Mismatches: 13, Indels: 20
0.68 0.13 0.20
Matches are distributed among these distances:
16 4 0.06
17 8 0.12
18 31 0.45
19 14 0.20
20 8 0.12
21 4 0.06
ACGTcount: A:0.28, C:0.55, G:0.00, T:0.16
Consensus pattern (18 bp):
CCACTACCTCCATCACCC
Found at i:7155928 original size:19 final size:21
Alignment explanation
Indices: 7155903--7155947 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
7155893 GTTATGTTTC
*
7155903 ATATTAT-TATAT-TATATAT
1 ATATTATGTAAATATATATAT
*
7155922 TTATTATGTAAATATATATAT
1 ATATTATGTAAATATATATAT
7155943 ATATT
1 ATATT
7155948 CTTAAGCGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 6 0.29
20 4 0.19
21 11 0.52
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (21 bp):
ATATTATGTAAATATATATAT
Found at i:7156168 original size:21 final size:21
Alignment explanation
Indices: 7156135--7156185 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
7156125 TATTATCCCC
** *
7156135 CATATTTAATGTTATCGTCAA
1 CATATTTTTTGTTATCATCAA
* *
7156156 CATATTTTTTGTTATTATCAT
1 CATATTTTTTGTTATCATCAA
7156177 CATATTTTT
1 CATATTTTT
7156186 AATATTATTA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.27, C:0.12, G:0.06, T:0.55
Consensus pattern (21 bp):
CATATTTTTTGTTATCATCAA
Found at i:7156634 original size:126 final size:126
Alignment explanation
Indices: 7156399--7156642 Score: 382
Period size: 126 Copynumber: 1.9 Consensus size: 126
7156389 CATTGATCTT
* * * *
7156399 CTCTTAAAATTTTTCAAAATAAAGGCAATGTTCGATAGTTAAATAATTCGAAGAATCGTGCCGTA
1 CTCTAAAAAATTTTCAAAATAAAGGCAATGTTCGATAGTTAAAGAATTCGAAGAATCGTGCCCTA
* *
7156464 ACGTACTGGGTTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAATTCA
66 AAGTACTGGGTTTCACTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAATTCA
*
7156525 CTCTAAAAAATTTTCAAAATAAAGGCAATGTTC-AGTATTTAAAGAATTCGAAGAATCGTGCCCT
1 CTCTAAAAAATTTTCAAAATAAAGGCAATGTTCGA-TAGTTAAAGAATTCGAAGAATCGTGCCCT
* * *
7156589 AAAGTACTGTGTTTCACTTTCTTTGTTTGTTTTGAATATTCGAATATTCTCTTA
65 AAAGTACTGGGTTTCACTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTA
7156643 AGGCTAAAAC
Statistics
Matches: 107, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
125 1 0.01
126 106 0.99
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.39
Consensus pattern (126 bp):
CTCTAAAAAATTTTCAAAATAAAGGCAATGTTCGATAGTTAAAGAATTCGAAGAATCGTGCCCTA
AAGTACTGGGTTTCACTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAATTCA
Found at i:7165787 original size:135 final size:135
Alignment explanation
Indices: 7165545--7165962 Score: 522
Period size: 135 Copynumber: 3.1 Consensus size: 135
7165535 CTACTTAGTA
* * ** * *
7165545 AAGATAAAGCTGATGATTGGGATCTGCTCCATCGCCGGTACGTGGAGATAAGATTCTCCAAAATT
1 AAGATAAGGCTGATGACTGAAATCTGCTCCATCGCCGATACATGGAGATAAGATTCTCCAAAATT
* * * * *
7165610 CGATCTGCTTCACTCTTGCTCAATGAAGATAAGATCTAGTATATTTAGCCTGCTTCACTCCTGCT
66 TGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATATTTAGCCTGCTCCACTCCTGCT
7165675 CAGTG
131 CAGTG
* * * * * * * *
7165680 AAGATAAGGTTGGTGGCTGAAATCTGCTCCATTGTCGATCCATGGAGATAAGTTTCACCAAAATT
1 AAGATAAGGCTGATGACTGAAATCTGCTCCATCGCCGATACATGGAGATAAGATTCTCCAAAATT
* * *
7165745 TGATCTGC-TCTGCTCCTGCTCAGCGAAGATAAGA-CTTGGTATATTTAGCCTACTCCACTCCTG
66 TGATCTGCTTC-ACTCCTGCTCAGTGAAGATAAGATC-TGGTATATTTAGCCTGCTCCACTCCTG
7165808 CTCAGTG
129 CTCAGTG
* * * * *
7165815 AAGATAAAGCTGATGATTGGAATCTGCTCCATCGCCGGTACGTGGAGATAAGATTCTCCAAAA-T
1 AAGATAAGGCTGATGACTGAAATCTGCTCCATCGCCGATACATGGAGATAAGATTCTCCAAAATT
*
7165879 TCATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGG--TATTTAGCCTGCTCCACTCCTGCT
66 TGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATATTTAGCCTGCTCCACTCCTGCT
*
7165942 CAGTA
131 CAGTG
7165947 AAGATAAGGCTGATGA
1 AAGATAAGGCTGATGA
7165963 TATCTGCCAT
Statistics
Matches: 238, Mismatches: 41, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
132 42 0.18
134 35 0.15
135 161 0.68
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.29
Consensus pattern (135 bp):
AAGATAAGGCTGATGACTGAAATCTGCTCCATCGCCGATACATGGAGATAAGATTCTCCAAAATT
TGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATATTTAGCCTGCTCCACTCCTGCT
CAGTG
Found at i:7179393 original size:46 final size:46
Alignment explanation
Indices: 7179305--7179395 Score: 110
Period size: 46 Copynumber: 2.0 Consensus size: 46
7179295 TGTTACCTTG
* * *
7179305 ATGATGTGCTTGAGAGGAAAAGAGGAAGGATAATATAAGAGAATTA
1 ATGATGTGCTTAAGAGGAAAAGAGAAAGGATAAAATAAGAGAATTA
* * * **
7179351 ATGATGTGCTTAAGCGGAAAAGTGAAAGGGTAAAATGTGAGAATT
1 ATGATGTGCTTAAGAGGAAAAGAGAAAGGATAAAATAAGAGAATT
7179396 GAAAAGGTAA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.43, C:0.03, G:0.31, T:0.23
Consensus pattern (46 bp):
ATGATGTGCTTAAGAGGAAAAGAGAAAGGATAAAATAAGAGAATTA
Found at i:7181505 original size:23 final size:23
Alignment explanation
Indices: 7181475--7181521 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
7181465 AGTTTTGAAC
*
7181475 TTAAAAAATGGCAGATAAAATAG
1 TTAAAAAATGGCAGAGAAAATAG
7181498 TTAAAAAATGGCAGAGAAAATAG
1 TTAAAAAATGGCAGAGAAAATAG
7181521 T
1 T
7181522 ATGGTTGCCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.55, C:0.04, G:0.19, T:0.21
Consensus pattern (23 bp):
TTAAAAAATGGCAGAGAAAATAG
Found at i:7185361 original size:35 final size:35
Alignment explanation
Indices: 7185322--7185390 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
7185312 TTGTCCACGG
7185322 TCTTTCATGAATTCCCTTGTTAACTCAGGTTCATA
1 TCTTTCATGAATTCCCTTGTTAACTCAGGTTCATA
7185357 TCTTTCATGAATTCCCTTGTTAACTCAGGTTCAT
1 TCTTTCATGAATTCCCTTGTTAACTCAGGTTCAT
7185391 CTTTATTGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.22, C:0.23, G:0.12, T:0.43
Consensus pattern (35 bp):
TCTTTCATGAATTCCCTTGTTAACTCAGGTTCATA
Found at i:7200879 original size:26 final size:26
Alignment explanation
Indices: 7200828--7200879 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
7200818 TAATTTGTTA
* **
7200828 TAAAATTAATATATTTAACTTTAATT
1 TAAAATTAATAAATTTAACTACAATT
7200854 TAAAATTAAATAAATTTAA-TACAATT
1 TAAAATT-AATAAATTTAACTACAATT
7200880 ATACATTAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 12 0.55
27 10 0.45
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (26 bp):
TAAAATTAATAAATTTAACTACAATT
Found at i:7216877 original size:28 final size:28
Alignment explanation
Indices: 7216846--7216908 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
7216836 TCCCATATTA
7216846 ATGGGGTATAGGAAAAGTCTCATAACTT
1 ATGGGGTATAGGAAAAGTCTCATAACTT
* * *
7216874 ATGGGGTATAGGAAGAGTTTTATAACTT
1 ATGGGGTATAGGAAAAGTCTCATAACTT
7216902 ATGGGGT
1 ATGGGGT
7216909 TGATAATGAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.32, C:0.06, G:0.30, T:0.32
Consensus pattern (28 bp):
ATGGGGTATAGGAAAAGTCTCATAACTT
Found at i:7222252 original size:28 final size:28
Alignment explanation
Indices: 7222221--7222280 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
7222211 CCATATTAAT
7222221 GGGTATAAGAAAAGTCTCATAACTTATG
1 GGGTATAAGAAAAGTCTCATAACTTATG
* * * * *
7222249 GGGTATAGGAAGAGTTTTATAATTTATG
1 GGGTATAAGAAAAGTCTCATAACTTATG
7222277 GGGT
1 GGGT
7222281 TGATAATGAC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.33, C:0.05, G:0.28, T:0.33
Consensus pattern (28 bp):
GGGTATAAGAAAAGTCTCATAACTTATG
Found at i:7222466 original size:25 final size:26
Alignment explanation
Indices: 7222438--7222514 Score: 67
Period size: 25 Copynumber: 3.1 Consensus size: 26
7222428 TTTAAAATAA
7222438 AATAGTATTTATTATATAAT-TAATT
1 AATAGTATTTATTATATAATATAATT
* *
7222463 AATA-CATATTATTA-ACAATATAATT
1 AATAGTAT-TTATTATATAATATAATT
7222488 --T-GTATTTATTATATAAAATATAATT
1 AATAGTATTTATTATAT--AATATAATT
7222513 AA
1 AA
7222515 CAATAATTGT
Statistics
Matches: 40, Mismatches: 4, Indels: 14
0.69 0.07 0.24
Matches are distributed among these distances:
22 6 0.15
23 4 0.10
24 6 0.15
25 24 0.60
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.47
Consensus pattern (26 bp):
AATAGTATTTATTATATAATATAATT
Found at i:7237478 original size:24 final size:24
Alignment explanation
Indices: 7237451--7237498 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
7237441 TCAAAATAAG
7237451 CGAAAAGTTTTCCTTCTCTTTGCC
1 CGAAAAGTTTTCCTTCTCTTTGCC
7237475 CGAAAAGTTTTCCTTCTCTTTGCC
1 CGAAAAGTTTTCCTTCTCTTTGCC
7237499 ACAAACAAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.17, C:0.29, G:0.12, T:0.42
Consensus pattern (24 bp):
CGAAAAGTTTTCCTTCTCTTTGCC
Found at i:7239764 original size:76 final size:74
Alignment explanation
Indices: 7239633--7239789 Score: 287
Period size: 76 Copynumber: 2.1 Consensus size: 74
7239623 CGAAGCGAAT
7239633 CAGGTAAGAACTTCTGTTTCATGGTAGTAAATTATTATTGCATTTCTAATGGACTGAGGATAAAA
1 CAGG-AAGAACTTCTGTTTCATGGTAGTAAATTATTATTGCATTTCTAATGGACTGAGGAT--AA
7239698 CTTTTCTTTCTA
63 CTTTTCTTTCTA
7239710 CAGGAAGAACTTCTGTTTCATGGTAGTAAATTATTATTGCATTTCTAATGGACTGAGGATAACTT
1 CAGGAAGAACTTCTGTTTCATGGTAGTAAATTATTATTGCATTTCTAATGGACTGAGGATAACTT
7239775 TTCTTTCTA
66 TTCTTTCTA
7239784 CAGGAA
1 CAGGAA
7239790 ATTATCCAAG
Statistics
Matches: 80, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
74 20 0.25
76 56 0.70
77 4 0.05
ACGTcount: A:0.30, C:0.13, G:0.18, T:0.39
Consensus pattern (74 bp):
CAGGAAGAACTTCTGTTTCATGGTAGTAAATTATTATTGCATTTCTAATGGACTGAGGATAACTT
TTCTTTCTA
Found at i:7248031 original size:6 final size:6
Alignment explanation
Indices: 7248022--7248054 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
7248012 TTTTTTTTTT
*
7248022 TGTGCG TGTGCG TGTGCG TGTGCG TGTGTG TGT
1 TGTGCG TGTGCG TGTGCG TGTGCG TGTGCG TGT
7248055 TTGTGAATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.00, C:0.12, G:0.48, T:0.39
Consensus pattern (6 bp):
TGTGCG
Found at i:7249151 original size:6 final size:6
Alignment explanation
Indices: 7249142--7249171 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
7249132 TACGTGTACG
7249142 TGTATA TGTATA TGTATA TGTATA TGTATA
1 TGTATA TGTATA TGTATA TGTATA TGTATA
7249172 CATGTACTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (6 bp):
TGTATA
Found at i:7249985 original size:6 final size:6
Alignment explanation
Indices: 7249974--7250021 Score: 60
Period size: 6 Copynumber: 8.0 Consensus size: 6
7249964 TGGCCCCAGC
* * * *
7249974 GATGGG GATGGG GATGGG GATGGG TATGGG CATGGG CATGGG CATGGG
1 GATGGG GATGGG GATGGG GATGGG GATGGG GATGGG GATGGG GATGGG
7250022 TGTCATGGAC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 40 1.00
ACGTcount: A:0.17, C:0.06, G:0.58, T:0.19
Consensus pattern (6 bp):
GATGGG
Found at i:7253368 original size:43 final size:44
Alignment explanation
Indices: 7253307--7253396 Score: 164
Period size: 45 Copynumber: 2.0 Consensus size: 44
7253297 ATTTACTACT
7253307 TTCATATGATATAAAAAAA-GGGGGGGTTAATAAGAGTTAGATA
1 TTCATATGATATAAAAAAAGGGGGGGGTTAATAAGAGTTAGATA
7253350 TTCATATGATATAAAAAAAGGGGGGGGGTTAATAAGAGTTAGATA
1 TTCATATGATATAAAAAAA-GGGGGGGGTTAATAAGAGTTAGATA
7253395 TT
1 TT
7253397 TATTATAAGC
Statistics
Matches: 45, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
43 19 0.42
45 26 0.58
ACGTcount: A:0.42, C:0.02, G:0.27, T:0.29
Consensus pattern (44 bp):
TTCATATGATATAAAAAAAGGGGGGGGTTAATAAGAGTTAGATA
Found at i:7260373 original size:45 final size:45
Alignment explanation
Indices: 7260268--7260383 Score: 151
Period size: 45 Copynumber: 2.6 Consensus size: 45
7260258 ATCATACCAG
* *
7260268 AAATGAGTAAGACCATAGCTGAAAGATGCTATGGCATCATGATTC
1 AAATGAGTAAGACCATAGCTGAAAGACGCTATGGCATCACGATTC
* * *
7260313 AGACGAGTAAGACCATAGCTGAAAGACGCTATGGCATCGCGATTC
1 AAATGAGTAAGACCATAGCTGAAAGACGCTATGGCATCACGATTC
* * * *
7260358 AAATGTGTAACACCATGGTTGAAAGA
1 AAATGAGTAAGACCATAGCTGAAAGA
7260384 TACCATGGCA
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 60 1.00
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (45 bp):
AAATGAGTAAGACCATAGCTGAAAGACGCTATGGCATCACGATTC
Found at i:7260426 original size:46 final size:46
Alignment explanation
Indices: 7260369--7260531 Score: 256
Period size: 46 Copynumber: 3.5 Consensus size: 46
7260359 AATGTGTAAC
*
7260369 ACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAATAAG
1 ACCATGATTGAAAGATACCATGGCAACATGACAGGAAATGAATAAG
7260415 ACCATGATTGAAAGATACCATGGCAACATGACAGGAAATGAATAAG
1 ACCATGATTGAAAGATACCATGGCAACATGACAGGAAATGAATAAG
* * *
7260461 ACCATGGTTGAAAGATACCACGGCAACATGACATGAAATGAATAAG
1 ACCATGATTGAAAGATACCATGGCAACATGACAGGAAATGAATAAG
* *
7260507 ACCAT-AGTTGAAAGACACTATGGCA
1 ACCATGA-TTGAAAGATACCATGGCA
7260532 TCATTTCGAA
Statistics
Matches: 108, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
46 108 1.00
ACGTcount: A:0.44, C:0.17, G:0.22, T:0.18
Consensus pattern (46 bp):
ACCATGATTGAAAGATACCATGGCAACATGACAGGAAATGAATAAG
Found at i:7263688 original size:10 final size:10
Alignment explanation
Indices: 7263675--7263720 Score: 65
Period size: 10 Copynumber: 4.6 Consensus size: 10
7263665 AAAATAATTT
*
7263675 AAAAATCATA
1 AAAAATTATA
7263685 AAAAATTATA
1 AAAAATTATA
**
7263695 AAAAATGGTA
1 AAAAATTATA
7263705 AAAAATTATA
1 AAAAATTATA
7263715 AAAAAT
1 AAAAAT
7263721 GGTAAACTAT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
10 31 1.00
ACGTcount: A:0.70, C:0.02, G:0.04, T:0.24
Consensus pattern (10 bp):
AAAAATTATA
Found at i:7263698 original size:20 final size:20
Alignment explanation
Indices: 7263675--7263720 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
7263665 AAAATAATTT
7263675 AAAAATCATAAAAAATTATA
1 AAAAATCATAAAAAATTATA
**
7263695 AAAAATGGTAAAAAATTATA
1 AAAAATCATAAAAAATTATA
7263715 AAAAAT
1 AAAAAT
7263721 GGTAAACTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.70, C:0.02, G:0.04, T:0.24
Consensus pattern (20 bp):
AAAAATCATAAAAAATTATA
Found at i:7263721 original size:20 final size:20
Alignment explanation
Indices: 7263683--7263726 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
7263673 TTAAAAATCA
7263683 TAAAAAATTATAAAAAATGG
1 TAAAAAATTATAAAAAATGG
7263703 TAAAAAATTATAAAAAATGG
1 TAAAAAATTATAAAAAATGG
7263723 TAAA
1 TAAA
7263727 CTATACAAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.66, C:0.00, G:0.09, T:0.25
Consensus pattern (20 bp):
TAAAAAATTATAAAAAATGG
Found at i:7263726 original size:10 final size:10
Alignment explanation
Indices: 7263675--7263726 Score: 59
Period size: 10 Copynumber: 5.2 Consensus size: 10
7263665 AAAATAATTT
*
7263675 AAAAATCATA
1 AAAAATGATA
*
7263685 AAAAATTATA
1 AAAAATGATA
*
7263695 AAAAATGGTA
1 AAAAATGATA
*
7263705 AAAAATTATA
1 AAAAATGATA
*
7263715 AAAAATGGTA
1 AAAAATGATA
7263725 AA
1 AA
7263727 CTATACAAAG
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
10 35 1.00
ACGTcount: A:0.67, C:0.02, G:0.08, T:0.23
Consensus pattern (10 bp):
AAAAATGATA
Found at i:7275434 original size:14 final size:14
Alignment explanation
Indices: 7275415--7275442 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
7275405 CGATTTTTTG
7275415 ATTAAAAAAATATT
1 ATTAAAAAAATATT
7275429 ATTAAAAAAATATT
1 ATTAAAAAAATATT
7275443 TAAAAGTGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
ATTAAAAAAATATT
Found at i:7276738 original size:30 final size:30
Alignment explanation
Indices: 7276702--7276764 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
7276692 ACTTAACAAG
7276702 CAAATGCCTCTAAAATAATAAAAAAATTAA
1 CAAATGCCTCTAAAATAATAAAAAAATTAA
* *
7276732 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAAAAAAATTAA
7276762 CAA
1 CAA
7276765 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.59, C:0.14, G:0.03, T:0.24
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAAAAAAATTAA
Found at i:7277287 original size:21 final size:21
Alignment explanation
Indices: 7277257--7277296 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
7277247 TTTAATTTTT
7277257 TTCAGAATGAAAACGTTGAAG
1 TTCAGAATGAAAACGTTGAAG
* *
7277278 TTCAGGATGAAAATGTTGA
1 TTCAGAATGAAAACGTTGA
7277297 CATTGTATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.40, C:0.07, G:0.25, T:0.28
Consensus pattern (21 bp):
TTCAGAATGAAAACGTTGAAG
Found at i:7302502 original size:21 final size:21
Alignment explanation
Indices: 7302476--7302516 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
7302466 CATCATCAAC
7302476 CAAAACTTAAAAAATTCTCAT
1 CAAAACTTAAAAAATTCTCAT
7302497 CAAAACTTAAAAAATTCTCA
1 CAAAACTTAAAAAATTCTCA
7302517 GAGTACCATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.54, C:0.20, G:0.00, T:0.27
Consensus pattern (21 bp):
CAAAACTTAAAAAATTCTCAT
Found at i:7304091 original size:23 final size:23
Alignment explanation
Indices: 7304064--7304109 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
7304054 CGTTCACAAA
7304064 GGTACATCTTATAACAAAATAAG
1 GGTACATCTTATAACAAAATAAG
*
7304087 GGTACATCTTATAACAGAATAAG
1 GGTACATCTTATAACAAAATAAG
7304110 CTTGAATCCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.46, C:0.13, G:0.15, T:0.26
Consensus pattern (23 bp):
GGTACATCTTATAACAAAATAAG
Found at i:7317011 original size:30 final size:30
Alignment explanation
Indices: 7316977--7317036 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
7316967 TTATAAAGAT
7316977 AGCAATGGAAAGATTAAAATATATTGTTAA
1 AGCAATGGAAAGATTAAAATATATTGTTAA
*
7317007 AGCAATGGAAAGATTAAAATATGTTGTTAA
1 AGCAATGGAAAGATTAAAATATATTGTTAA
7317037 TATATGTACT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.48, C:0.03, G:0.18, T:0.30
Consensus pattern (30 bp):
AGCAATGGAAAGATTAAAATATATTGTTAA
Found at i:7318721 original size:135 final size:132
Alignment explanation
Indices: 7318484--7318967 Score: 605
Period size: 132 Copynumber: 3.7 Consensus size: 132
7318474 TCCTTGAACG
* * * * * * ** **
7318484 AACGGGAAATCGCAACCCAGCACGATAGGGCACGACTCC-CGAATTGCCAAACATCGAGTATTAC
1 AACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAATATCAAACATCGC
* ** * *
7318548 CTTCGTTTTAAAGAGTTTTTAGAAAACATGAACAAAATTCTAAAGGGATAATT-GATTATTTTGA
66 CTTCGTTTTAAAGAGTTTTTAGAAGACATGAATGAAATTTTGAAGGGAT-ATTCGATTATTTTGA
7318612 GCA
130 GCA
* * *
7318615 AACGAGAAATTGTAACCCAGCACGTTAGGGCACGATTCCGCGAATTGTCAAATATCGAACATCGC
1 AACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAATATCAAACATCGC
* *
7318680 CTTCGTTTTAAAGGATTGTTTTTAGAAGACATGAATGAAATTTTGAAGAGATATTCGATCATTTT
66 CTTCGTTTTAAA-GA--GTTTTTAGAAGACATGAATGAAATTTTGAAGGGATATTCGATTATTTT
*
7318745 GAGAA
128 GAGCA
* *
7318750 AACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCCACGAATTGCCAAATATCAAACATCGC
1 AACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAATATCAAACATCGC
* * * ** *
7318815 ATTCGTTTTAAAGAATTTTTAAAAGACATGGGTGAAATTTTGAAGGGGTATTCGATTATTTTGAG
66 CTTCGTTTTAAAGAGTTTTTAGAAGACATGAATGAAATTTTGAAGGGATATTCGATTATTTTGAG
7318880 CA
131 CA
* *
7318882 AACGTGAAATTGCAACCCAGCACGTTAGGCCACGATTCCGCGAATTGCCAAATATCAAATC-TCG
1 AACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAATATCAAA-CATCG
* *
7318946 TCTTCGTTTTAAAGAATTTTTA
65 CCTTCGTTTTAAAGAGTTTTTA
7318968 AATGAATAAT
Statistics
Matches: 308, Mismatches: 39, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
131 34 0.11
132 154 0.50
133 3 0.01
134 5 0.02
135 112 0.36
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (132 bp):
AACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAATATCAAACATCGC
CTTCGTTTTAAAGAGTTTTTAGAAGACATGAATGAAATTTTGAAGGGATATTCGATTATTTTGAG
CA
Found at i:7319028 original size:267 final size:264
Alignment explanation
Indices: 7318484--7318969 Score: 611
Period size: 267 Copynumber: 1.8 Consensus size: 264
7318474 TCCTTGAACG
* * * * ** * *
7318484 AACGGGAAATCGCAACCCAGCACGATAGGGCACGACTCCCGAATTGCCAAACATCGAGTATTACC
1 AACGAGAAATTGCAACCCAACACGATAGGGCACGACTCCCGAATTGCCAAACATCAAACATCACA
*
7318549 TTCGTTTTAAAGAGTTTTTAGAAAACATGAACAAAATTCTAAAGGGATAATTGATTATTTTGAGC
66 TTCGTTTTAAAGAATTTTTAGAAAACATGAACAAAATTCTAAAGGGATAATTGATTATTTTGAGC
* * * *
7318614 AAACGAGAAATTGTAACCCAGCACGTTAGGGCACGATTCCGCGAATTGTCAAATATCGAACATCG
131 AAACGAGAAATTGCAACCCAGCACGTTAGGCCACGATTCCGCGAATTGCCAAATATCAAACATCG
* ** * *
7318679 CCTTCGTTTTAAAGGATTGTTTTTAGAAGACATGAATGAAATTTTGAAGAGATATTCGATCATTT
196 CCTTCGTTTTAAAGAATTGTTTAAAGAAGACATGAATAAAATTTTGAAAAGATATTCGATC--TT
7318744 TGAGAA
259 TGAGAA
* * * *
7318750 AACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCCACGAATTGCCAAATATCAAACATCGC
1 AACGAGAAATTGCAACCCAACACGATAGGGCACGACTCC-CGAATTGCCAAACATCAAACATCAC
**** * * *
7318815 ATTCGTTTTAAAGAATTTTTA-AAAGACATGGGTGAAATTTTGAAGGGGT-ATTCGATTATTTTG
65 ATTCGTTTTAAAGAATTTTTAGAAA-ACATGAACAAAATTCTAAAGGGATAATT-GATTATTTTG
*
7318878 AGCAAACGTGAAATTGCAACCCAGCACGTTAGGCCACGATTCCGCGAATTGCCAAATATCAAATC
128 AGCAAACGAGAAATTGCAACCCAGCACGTTAGGCCACGATTCCGCGAATTGCCAAATATCAAA-C
*
7318943 -TCGTCTTCGTTTTAAAGAATT-TTTAAA
192 ATCGCCTTCGTTTTAAAGAATTGTTTAAA
7318970 TGAATAATTA
Statistics
Matches: 187, Mismatches: 29, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
266 44 0.24
267 142 0.76
268 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (264 bp):
AACGAGAAATTGCAACCCAACACGATAGGGCACGACTCCCGAATTGCCAAACATCAAACATCACA
TTCGTTTTAAAGAATTTTTAGAAAACATGAACAAAATTCTAAAGGGATAATTGATTATTTTGAGC
AAACGAGAAATTGCAACCCAGCACGTTAGGCCACGATTCCGCGAATTGCCAAATATCAAACATCG
CCTTCGTTTTAAAGAATTGTTTAAAGAAGACATGAATAAAATTTTGAAAAGATATTCGATCTTTG
AGAA
Found at i:7320442 original size:14 final size:15
Alignment explanation
Indices: 7320423--7320452 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
7320413 GAATCATAAG
7320423 ATAAAA-AAAATAGA
1 ATAAAAGAAAATAGA
7320437 ATAAAAGAAAATAGA
1 ATAAAAGAAAATAGA
7320452 A
1 A
7320453 AAGGAGACTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.77, C:0.00, G:0.10, T:0.13
Consensus pattern (15 bp):
ATAAAAGAAAATAGA
Found at i:7325785 original size:20 final size:20
Alignment explanation
Indices: 7325757--7325805 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
7325747 ATATATCCTG
*
7325757 ATTTTATTTGATTTCAATCA
1 ATTTGATTTGATTTCAATCA
*
7325777 ATTTGATTTGATTTTAATCA
1 ATTTGATTTGATTTCAATCA
*
7325797 AATTGATTT
1 ATTTGATTT
7325806 AATCGTTCCT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.31, C:0.06, G:0.08, T:0.55
Consensus pattern (20 bp):
ATTTGATTTGATTTCAATCA
Found at i:7326265 original size:28 final size:28
Alignment explanation
Indices: 7326233--7326301 Score: 72
Period size: 28 Copynumber: 2.5 Consensus size: 28
7326223 CATAATTTAA
7326233 ATATAAATTATTCAATTTATTT-TATTTT
1 ATATAAATTATTCAATTTATTTATA-TTT
* *
7326261 ATATAGAAATATT-TATTTATTTATATTT
1 ATATA-AATTATTCAATTTATTTATATTT
*
7326289 ATAT-ATTTATTCA
1 ATATAAATTATTCA
7326302 CTAACATGTT
Statistics
Matches: 33, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
26 5 0.15
28 20 0.61
29 8 0.24
ACGTcount: A:0.38, C:0.03, G:0.01, T:0.58
Consensus pattern (28 bp):
ATATAAATTATTCAATTTATTTATATTT
Found at i:7326286 original size:14 final size:14
Alignment explanation
Indices: 7326269--7326298 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7326259 TTATATAGAA
*
7326269 ATATTTATTTATTT
1 ATATTTATATATTT
7326283 ATATTTATATATTT
1 ATATTTATATATTT
7326297 AT
1 AT
7326299 TCACTAACAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
ATATTTATATATTT
Found at i:7326376 original size:18 final size:18
Alignment explanation
Indices: 7326335--7326376 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
7326325 ACAAGTTTCA
* *
7326335 TCCAATAAAAATAATTCT
1 TCCAAAAAAAATAATTAT
*
7326353 TACAAAAAAAATAATTAT
1 TCCAAAAAAAATAATTAT
7326371 TCCAAA
1 TCCAAA
7326377 TTTCATTTAC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29
Consensus pattern (18 bp):
TCCAAAAAAAATAATTAT
Found at i:7326812 original size:28 final size:28
Alignment explanation
Indices: 7326761--7326814 Score: 83
Period size: 28 Copynumber: 1.9 Consensus size: 28
7326751 TAGAAAAAAC
*
7326761 ATTAAGACATTAAATGCAATGAAAAGTT
1 ATTAAGACATTAAATGCAAAGAAAAGTT
7326789 ATTAAGACATTAAATG-AAGAGAAAAG
1 ATTAAGACATTAAATGCAA-AGAAAAG
7326815 GCTATTGTCT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 2 0.08
28 22 0.92
ACGTcount: A:0.54, C:0.06, G:0.17, T:0.24
Consensus pattern (28 bp):
ATTAAGACATTAAATGCAAAGAAAAGTT
Found at i:7338842 original size:112 final size:113
Alignment explanation
Indices: 7338638--7338868 Score: 365
Period size: 112 Copynumber: 2.1 Consensus size: 113
7338628 TTATTTCTTT
* * * *
7338638 TCTTTTGTTTTGTTTGGCGGCGATGTTACTTTTCGAGCTGACTATCACCTGCATTTTTCTCCCTC
1 TCTTCTGTTTTGTTTGGCGGCGATGTTACTCTTCAAGCTGACTATCACCCGCATTTTTCTCCCTC
* * * *
7338703 CCATAAACTCTCTCTTTCTTCATTTCTTTATCTCATTCACTCTATGTG
66 CCATAAACCCTCTCTTTCATCATTTCTTTATCTCATTCACACTATATG
*
7338751 TCTTCTGTTTTGTTTGGCGGCGATGTTAGTCTTCAAGCTGACTATCACCCGCA-TTTTCTCCCTC
1 TCTTCTGTTTTGTTTGGCGGCGATGTTACTCTTCAAGCTGACTATCACCCGCATTTTTCTCCCTC
*
7338815 CCATAAACCCTCTCTTTCATCATTTCTTTATCTCATTCGCACTATATG
66 CCATAAACCCTCTCTTTCATCATTTCTTTATCTCATTCACACTATATG
7338863 TCTTCT
1 TCTTCT
7338869 CTCTCTTCAA
Statistics
Matches: 108, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
112 60 0.56
113 48 0.44
ACGTcount: A:0.15, C:0.28, G:0.12, T:0.45
Consensus pattern (113 bp):
TCTTCTGTTTTGTTTGGCGGCGATGTTACTCTTCAAGCTGACTATCACCCGCATTTTTCTCCCTC
CCATAAACCCTCTCTTTCATCATTTCTTTATCTCATTCACACTATATG
Found at i:7345642 original size:2 final size:2
Alignment explanation
Indices: 7345635--7345659 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7345625 GCCCTTTGGT
7345635 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
7345660 TCTGTGCTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:7347050 original size:64 final size:64
Alignment explanation
Indices: 7346978--7347106 Score: 240
Period size: 64 Copynumber: 2.0 Consensus size: 64
7346968 TATATTTTAA
*
7346978 TATTTTATTTTTGAAATATTATGTTTTAATCACTTATCTTATCGTCTTGTTATGAAGTGGTCAC
1 TATTTTATTTTTGAAATATTATGTTTTAATCACTTACCTTATCGTCTTGTTATGAAGTGGTCAC
*
7347042 TATTTTATTTTTGAAATGTTATGTTTTAATCACTTACCTTATCGTCTTGTTATGAAGTGGTCAC
1 TATTTTATTTTTGAAATATTATGTTTTAATCACTTACCTTATCGTCTTGTTATGAAGTGGTCAC
7347106 T
1 T
7347107 CTACCGTTAA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 63 1.00
ACGTcount: A:0.24, C:0.12, G:0.13, T:0.51
Consensus pattern (64 bp):
TATTTTATTTTTGAAATATTATGTTTTAATCACTTACCTTATCGTCTTGTTATGAAGTGGTCAC
Found at i:7347975 original size:21 final size:21
Alignment explanation
Indices: 7347949--7347991 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
7347939 GGTTCGCTGT
*
7347949 ATTGGATTAGAGGTGTATTGG
1 ATTGGATTAGAGGTGTAATGG
7347970 ATTGGATTAGAGGTGTAATGG
1 ATTGGATTAGAGGTGTAATGG
7347991 A
1 A
7347992 ATAGAGGTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.28, C:0.00, G:0.37, T:0.35
Consensus pattern (21 bp):
ATTGGATTAGAGGTGTAATGG
Found at i:7347991 original size:16 final size:16
Alignment explanation
Indices: 7347972--7348004 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
7347962 TGTATTGGAT
*
7347972 TGGATTAGAGGTGTAA
1 TGGAATAGAGGTGTAA
7347988 TGGAATAGAGGTGTAA
1 TGGAATAGAGGTGTAA
7348004 T
1 T
7348005 AGCAAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.36, T:0.30
Consensus pattern (16 bp):
TGGAATAGAGGTGTAA
Found at i:7348049 original size:45 final size:44
Alignment explanation
Indices: 7347983--7348077 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 44
7347973 GGATTAGAGG
* *
7347983 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAAC-ACTGTTTGGTTGAA
* **
7348028 TGTAATGGAATAGAGGCGTAATAGTAAAACTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
7348072 TGTAAT
1 TGTAAT
7348078 AGAGGTGTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.33
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
Found at i:7348260 original size:18 final size:17
Alignment explanation
Indices: 7348239--7348273 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7348229 TTATTATTTA
*
7348239 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
7348257 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
7348274 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:7348267 original size:28 final size:27
Alignment explanation
Indices: 7348197--7348269 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
7348187 TTTATTATCA
*
7348197 AAAATAAATAATTTAATCATATTTAAAC
1 AAAATATATAATTTAAT-ATATTTAAAC
* * **
7348225 ATAAT-TATTATTTAATATATTTTAATT
1 AAAATATATAATTTAATATA-TTTAAAC
7348252 AAAATATATAATTTAATA
1 AAAATATATAATTTAATA
7348270 AAATTCTTAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
26 3 0.08
27 18 0.50
28 15 0.42
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (27 bp):
AAAATATATAATTTAATATATTTAAAC
Found at i:7348347 original size:77 final size:77
Alignment explanation
Indices: 7348265--7348492 Score: 220
Period size: 77 Copynumber: 3.1 Consensus size: 77
7348255 ATATATAATT
7348265 TAATAAAATTCTTAATAATTAGCAGAAATTTGTTTTGGTAAATTATTTTATTTAAATTTTAATAA
1 TAATAAAATTCTTAATAATTAGCAGAAATTTGTTTTGGTAAATTATTTTATTTAAATTTTAATAA
7348330 GATTAATATCAA
66 GATTAATATCAA
* * * * *
7348342 TAATAAATAAT-TTAATCATATTTAAACA-TAATTAT-TATT--T-AA-TA---TATTTTAA--T
1 TAATAAA-ATTCTTAAT-A-A-TT-AGCAGAAATT-TGTTTTGGTAAATTATTTTATTTAAATTT
*
7348395 TAA-AATATATAAT-T---
60 TAATAAGAT-TAATATCAA
7348409 TAATAAAATTCTTAATAATTAGCAGAAATTTGTTTTGGTAAATTATTTTATTTAAATTTTAATAA
1 TAATAAAATTCTTAATAATTAGCAGAAATTTGTTTTGGTAAATTATTTTATTTAAATTTTAATAA
7348474 GATTAATATCAA
66 GATTAATATCAA
7348486 TAATAAA
1 TAATAAA
7348493 TAATTTAATC
Statistics
Matches: 115, Mismatches: 12, Indels: 48
0.66 0.07 0.27
Matches are distributed among these distances:
63 4 0.03
64 9 0.08
65 1 0.01
66 4 0.03
67 14 0.12
68 2 0.02
70 5 0.04
71 15 0.13
73 15 0.13
74 5 0.04
76 2 0.02
77 21 0.18
78 4 0.03
79 1 0.01
80 9 0.08
81 4 0.03
ACGTcount: A:0.46, C:0.04, G:0.05, T:0.46
Consensus pattern (77 bp):
TAATAAAATTCTTAATAATTAGCAGAAATTTGTTTTGGTAAATTATTTTATTTAAATTTTAATAA
GATTAATATCAA
Found at i:7348383 original size:144 final size:144
Alignment explanation
Indices: 7348158--7348572 Score: 760
Period size: 144 Copynumber: 2.9 Consensus size: 144
7348148 ATGATTATTG
*
7348158 TTATTGTTATTTAAATTTTAATAAGATTATTTATTATCAAAAATAAATAATTTAATCATATTTAA
1 TTATT-TTATTTAAATTTTAATAAGATTA---A-TATCAATAATAAATAATTTAATCATATTTAA
7348223 ACATAATTATTATTTAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
61 ACATAATTATTATTTAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
7348288 AGAAATTTGTTTTGGTAAA
126 AGAAATTTGTTTTGGTAAA
7348307 TTATTTTATTTAAATTTTAATAAGATTAATATCAATAATAAATAATTTAATCATATTTAAACATA
1 TTATTTTATTTAAATTTTAATAAGATTAATATCAATAATAAATAATTTAATCATATTTAAACATA
7348372 ATTATTATTTAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCAGAAA
66 ATTATTATTTAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCAGAAA
7348437 TTTGTTTTGGTAAA
131 TTTGTTTTGGTAAA
7348451 TTATTTTATTTAAATTTTAATAAGATTAATATCAATAATAAATAATTTAATCATATTTAAACATA
1 TTATTTTATTTAAATTTTAATAAGATTAATATCAATAATAAATAATTTAATCATATTTAAACATA
*
7348516 ATTATTATTAAATATATTTTAATT-AAATATATAATTTAATAAAATTCTTAATAATTA
66 ATTATTATTTAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
7348573 ATATTCTTAT
Statistics
Matches: 264, Mismatches: 2, Indels: 6
0.97 0.01 0.02
Matches are distributed among these distances:
143 33 0.12
144 202 0.77
145 1 0.00
148 23 0.09
149 5 0.02
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.47
Consensus pattern (144 bp):
TTATTTTATTTAAATTTTAATAAGATTAATATCAATAATAAATAATTTAATCATATTTAAACATA
ATTATTATTTAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCAGAAA
TTTGTTTTGGTAAA
Found at i:7348404 original size:18 final size:17
Alignment explanation
Indices: 7348383--7348417 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7348373 TTATTATTTA
*
7348383 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
7348401 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
7348418 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:7348411 original size:28 final size:27
Alignment explanation
Indices: 7348343--7348413 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
7348333 TAATATCAAT
* *
7348343 AATAAATAATTTAATCATATTTAAACAT
1 AATATATAATTTAAT-ATATTTAAACAA
* **
7348371 AAT-TATTATTTAATATATTTTAATTAA
1 AATATATAATTTAATATA-TTTAAACAA
7348398 AATATATAATTTAATA
1 AATATATAATTTAATA
7348414 AAATTCTTAA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
26 3 0.09
27 18 0.51
28 14 0.40
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (27 bp):
AATATATAATTTAATATATTTAAACAA
Found at i:7348556 original size:27 final size:27
Alignment explanation
Indices: 7348485--7348556 Score: 67
Period size: 27 Copynumber: 2.7 Consensus size: 27
7348475 ATTAATATCA
*
7348485 ATAATAAATAATTTAATCATATTTAAAC
1 ATAATATATAATTTAAT-ATATTTAAAC
* * *
7348513 ATAAT-TATTATTAAATATATTTTAA-
1 ATAATATATAATTTAATATATTTAAAC
*
7348538 TTAAATATATAATTTAATA
1 AT-AATATATAATTTAATA
7348557 AAATTCTTAA
Statistics
Matches: 35, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
25 1 0.03
26 11 0.31
27 18 0.51
28 5 0.14
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (27 bp):
ATAATATATAATTTAATATATTTAAAC
Found at i:7348560 original size:17 final size:17
Alignment explanation
Indices: 7348527--7348560 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
7348517 TTATTATTAA
* *
7348527 ATATATTTTAATTAAAT
1 ATATAATTTAATAAAAT
7348544 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
7348561 TCTTAATAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:7362473 original size:21 final size:21
Alignment explanation
Indices: 7362449--7362493 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
7362439 AATTTTATGT
**
7362449 ATAAAATTATTTTAAATATAA
1 ATAAAATTATCATAAATATAA
7362470 ATAAAATTATCATAAATATAA
1 ATAAAATTATCATAAATATAA
7362491 ATA
1 ATA
7362494 TTTATCTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (21 bp):
ATAAAATTATCATAAATATAA
Found at i:7381126 original size:30 final size:30
Alignment explanation
Indices: 7381091--7381149 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
7381081 CTTTGAGTAC
*
7381091 TTATAAATAAATATTAA-TAAATTTATTTAA
1 TTATAAATAAA-AGTAATTAAATTTATTTAA
* *
7381121 TTATAATTAAAAGTAATTAAATTTTTTTA
1 TTATAAATAAAAGTAATTAAATTTATTTA
7381150 TTTCTTTCAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 4 0.16
30 21 0.84
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (30 bp):
TTATAAATAAAAGTAATTAAATTTATTTAA
Found at i:7384883 original size:8 final size:9
Alignment explanation
Indices: 7384862--7384888 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
7384852 GTTTTTATTA
7384862 AAAAAATTT
1 AAAAAATTT
7384871 AAAAAATTT
1 AAAAAATTT
7384880 AAAAAATTT
1 AAAAAATTT
7384889 TTATTTAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (9 bp):
AAAAAATTT
Found at i:7392204 original size:18 final size:18
Alignment explanation
Indices: 7392181--7392239 Score: 54
Period size: 18 Copynumber: 3.5 Consensus size: 18
7392171 TTGTTTATTG
7392181 TTATTCAATAACAATCAA
1 TTATTCAATAACAATCAA
* * *
7392199 TTATTCAGTATCAAAC-A
1 TTATTCAATAACAATCAA
*
7392216 --A-TCAATAAAAATCAA
1 TTATTCAATAACAATCAA
7392231 TTATTCAAT
1 TTATTCAAT
7392240 CTAGTAATAC
Statistics
Matches: 30, Mismatches: 7, Indels: 8
0.67 0.16 0.18
Matches are distributed among these distances:
14 8 0.27
15 2 0.07
17 2 0.07
18 18 0.60
ACGTcount: A:0.49, C:0.15, G:0.02, T:0.34
Consensus pattern (18 bp):
TTATTCAATAACAATCAA
Found at i:7394780 original size:427 final size:427
Alignment explanation
Indices: 7393962--7395188 Score: 2229
Period size: 427 Copynumber: 2.9 Consensus size: 427
7393952 CATATGACAT
* *
7393962 ATCAGGTCGAATTTCAGTATCCACTGTAGAAATAATAAGAAAAGGATCTGATCGATATCTTCTGA
1 ATCAGGTCGAATTTCAAT-TCCTCTGTAGAAATAATAAGAAAAGGATCTGATCGATATCTTCTGA
* *
7394027 GCATAGAAACATGAAAAACATCATGAATCTTTTGCAATTCTGGAAGCAAAGCCAGACAATATGTA
65 GCATAGAAACATGAAAAACATCATGAATCTTTTGCAATTCTGGAAGCAAAGCCAGACGATATGCA
*
7394092 ACTGGTCCAACTCTCTCAATAATCTCATATGGCCCAATAAAATGAGAACTTAGTTTTCCTTTTCG
130 ACTGGTCCAACTCTCTCAATAATCTCATATGGCCCAATAAAACGAGAACTTAGTTTTCCTTTTCG
* *
7394157 ACCGAATCTCATAATTTTCTTCCGAGGTGAAACTTTTAAAAATACCTTATCACCAACCGCGTACT
195 ACCGAATCTCATAATTTTCTTCCAAGGTGAAACTTTTAGAAATACCTTATCACCAACCGCGTACT
7394222 CAATGTCTCTACGTTTCAGATCTGCATATGACTTCTGCCTGTCAAAAGCTGCTTTCAATCTTTCT
260 CAATGTCTCTACGTTTCAGATCTGCATATGACTTCTGCCTGTCAAAAGCTGCTTTCAATCTTTCT
7394287 CGAATCTTCTTAACAGTGTCTTCTGTTTCTTGAATTAATTCTGGCCCACTATTATTGCATACAAA
325 CGAATCTTCTTAACAGTGTCTTCTGTTTCTTGAATTAATTCTGGCCCACTATTATTGCATACAAA
7394352 TTCAGCTAACGGTACATAACGTTCCCAACCGATTCAAG
390 TTCAGCTAACGGTACATAACGTTCCCAACCGATTCAAG
7394390 ATCAGGTCGAATTTCAATTCCTCTGTAGAAATAATAAGAAAAGGATCTGATCGATATCTTCTGAG
1 ATCAGGTCGAATTTCAATTCCTCTGTAGAAATAATAAGAAAAGGATCTGATCGATATCTTCTGAG
7394455 CATAGAAACATGAAAAACATCATGAATCTTTTGCAATTCTGGAAGCAAAGCCAGACGATATGCAA
66 CATAGAAACATGAAAAACATCATGAATCTTTTGCAATTCTGGAAGCAAAGCCAGACGATATGCAA
* * *
7394520 TTGGTCCAACTCTATCAATAATCTCATATGGCCCAATAAAACGAGAATTTAGTTTTCCTTTTCGA
131 CTGGTCCAACTCTCTCAATAATCTCATATGGCCCAATAAAACGAGAACTTAGTTTTCCTTTTCGA
7394585 CCGAATCTCATAATTTTCTTCCAAGGTGAAACTTTTAGAAATACCTTATCACCAACCGCGTACTC
196 CCGAATCTCATAATTTTCTTCCAAGGTGAAACTTTTAGAAATACCTTATCACCAACCGCGTACTC
7394650 AATGTCTCTACGTTTCAGATCTGCATATGACTTCTGCCTGTCAAAAGCTGCTTTCAATCTTTCTC
261 AATGTCTCTACGTTTCAGATCTGCATATGACTTCTGCCTGTCAAAAGCTGCTTTCAATCTTTCTC
* *
7394715 GAATCTTCTTAATAGTGTCTTCTATTTCTTGAATTAATTCTGGCCCACTATTATTGCATACAAAT
326 GAATCTTCTTAACAGTGTCTTCTGTTTCTTGAATTAATTCTGGCCCACTATTATTGCATACAAAT
*
7394780 TCAGCTAACGGTAGATAACGTTCCCAACCGATTCAAG
391 TCAGCTAACGGTACATAACGTTCCCAACCGATTCAAG
*
7394817 ATCAGGTCTAATTTCAATTCCTCTGTAGAAATAATAAGAAAAGGATCTGATCGATATCTTCTGAG
1 ATCAGGTCGAATTTCAATTCCTCTGTAGAAATAATAAGAAAAGGATCTGATCGATATCTTCTGAG
* *
7394882 CATAGAAACATGAAAAACATCATGAATTTTTTGCAATTCTGGAAGTAAAGCCAGACGATATGCAA
66 CATAGAAACATGAAAAACATCATGAATCTTTTGCAATTCTGGAAGCAAAGCCAGACGATATGCAA
*
7394947 CTGGTCCAACTCTCTCAATAATCTCATATGGCCCAATAAAACGAGGACTTAGTTTTCCTTTTCGA
131 CTGGTCCAACTCTCTCAATAATCTCATATGGCCCAATAAAACGAGAACTTAGTTTTCCTTTTCGA
* * *
7395012 CCGAATCTCAGAATTTTCTTCCAAGGTGAAACTTTTAGAAATACCTTATCACCAATCGCATACTC
196 CCGAATCTCATAATTTTCTTCCAAGGTGAAACTTTTAGAAATACCTTATCACCAACCGCGTACTC
* *
7395077 AATGTCTCTACGTTTCAGATCTGCATATGACTTCTACCTGTCAAAAGTTGCTTTCAATCTTTCTC
261 AATGTCTCTACGTTTCAGATCTGCATATGACTTCTGCCTGTCAAAAGCTGCTTTCAATCTTTCTC
* *
7395142 GAATCTTCTTAACAGTATCTCCTGTTTCTTGAATTAATTCTGGCCCA
326 GAATCTTCTTAACAGTGTCTTCTGTTTCTTGAATTAATTCTGGCCCA
7395189 ATCATTTTCT
Statistics
Matches: 770, Mismatches: 29, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
427 753 0.98
428 17 0.02
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.32
Consensus pattern (427 bp):
ATCAGGTCGAATTTCAATTCCTCTGTAGAAATAATAAGAAAAGGATCTGATCGATATCTTCTGAG
CATAGAAACATGAAAAACATCATGAATCTTTTGCAATTCTGGAAGCAAAGCCAGACGATATGCAA
CTGGTCCAACTCTCTCAATAATCTCATATGGCCCAATAAAACGAGAACTTAGTTTTCCTTTTCGA
CCGAATCTCATAATTTTCTTCCAAGGTGAAACTTTTAGAAATACCTTATCACCAACCGCGTACTC
AATGTCTCTACGTTTCAGATCTGCATATGACTTCTGCCTGTCAAAAGCTGCTTTCAATCTTTCTC
GAATCTTCTTAACAGTGTCTTCTGTTTCTTGAATTAATTCTGGCCCACTATTATTGCATACAAAT
TCAGCTAACGGTACATAACGTTCCCAACCGATTCAAG
Found at i:7398049 original size:75 final size:75
Alignment explanation
Indices: 7397926--7398075 Score: 255
Period size: 75 Copynumber: 2.0 Consensus size: 75
7397916 TAACATAATA
7397926 ATGTGACGATCCTAGATCTATTAAAGCATAAACGAGTTCTGAGTACAATAAAAATATACCAGTCA
1 ATGTGACGATCCTAGATCTATTAAAGCATAAACGAGTTCTGAGTACAATAAAAATATACCAGTCA
7397991 CCATATTGTG
66 CCATATTGTG
* * * * *
7398001 ATGTGATGATCTTGGATCTATTAAAGCATAAACGGGTTCTGAGTACAATAAAAATATACCCGTCA
1 ATGTGACGATCCTAGATCTATTAAAGCATAAACGAGTTCTGAGTACAATAAAAATATACCAGTCA
7398066 CCATATTGTG
66 CCATATTGTG
7398076 TACATCTCCT
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
75 70 1.00
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (75 bp):
ATGTGACGATCCTAGATCTATTAAAGCATAAACGAGTTCTGAGTACAATAAAAATATACCAGTCA
CCATATTGTG
Found at i:7399878 original size:47 final size:47
Alignment explanation
Indices: 7399787--7399878 Score: 114
Period size: 47 Copynumber: 2.0 Consensus size: 47
7399777 CCAACACACC
* * * *
7399787 AGTACGGCACTCAGTGCCTCATCGGCTTTATCGAAGTAAGTAGTAGT
1 AGTACGGCACTCAGTACCTCATCGGATTAACCGAAGTAAGTAGTAGT
* *
7399834 AGTACGGTACTTAGTACCTCATCGGATTAAACCGAAGTAA-TAGTA
1 AGTACGGCACTCAGTACCTCATCGGATT-AACCGAAGTAAGTAGTA
7399879 ACAGTATGAC
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
47 29 0.76
48 9 0.24
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (47 bp):
AGTACGGCACTCAGTACCTCATCGGATTAACCGAAGTAAGTAGTAGT
Found at i:7399923 original size:44 final size:44
Alignment explanation
Indices: 7399875--7399966 Score: 107
Period size: 44 Copynumber: 2.1 Consensus size: 44
7399865 CCGAAGTAAT
* *
7399875 AGTAACAGTATGACACACA-AGGTGCCTCATCGACTCGAA-GTCGA
1 AGTAACAATACGACACACATA-GTGCCTCATCGACTC-AAGGTCGA
** *
7399919 AGTAACAATACGACACTTATAGTGCTTCATCGACTCAAGGTCGA
1 AGTAACAATACGACACACATAGTGCCTCATCGACTCAAGGTCGA
7399963 AGTA
1 AGTA
7399967 TCCCTGAACA
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
43 2 0.05
44 38 0.93
45 1 0.02
ACGTcount: A:0.35, C:0.23, G:0.21, T:0.22
Consensus pattern (44 bp):
AGTAACAATACGACACACATAGTGCCTCATCGACTCAAGGTCGA
Found at i:7400864 original size:3 final size:3
Alignment explanation
Indices: 7400856--7400880 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
7400846 TCGTTACTTT
7400856 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
7400881 AACATAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:7402413 original size:12 final size:12
Alignment explanation
Indices: 7402396--7402420 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7402386 CACAAGTTAG
7402396 TGCATTTATGTA
1 TGCATTTATGTA
7402408 TGCATTTATGTA
1 TGCATTTATGTA
7402420 T
1 T
7402421 ATAACTCATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.16, T:0.52
Consensus pattern (12 bp):
TGCATTTATGTA
Found at i:7403404 original size:17 final size:16
Alignment explanation
Indices: 7403384--7403422 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 16
7403374 AAACCCAATT
7403384 CAATATTATAATTCCAA
1 CAATATT-TAATTCCAA
*
7403401 CAATAATTTATTTCCAA
1 CAAT-ATTTAATTCCAA
7403418 CAATA
1 CAATA
7403423 GAATAAATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 1 0.05
17 16 0.80
18 3 0.15
ACGTcount: A:0.46, C:0.18, G:0.00, T:0.36
Consensus pattern (16 bp):
CAATATTTAATTCCAA
Found at i:7434744 original size:15 final size:14
Alignment explanation
Indices: 7434703--7434751 Score: 55
Period size: 15 Copynumber: 3.4 Consensus size: 14
7434693 GAAATTTGTA
*
7434703 TTTT-TTTTTCTTTT
1 TTTTCTTTTTC-TCT
7434717 TTTTCTTTTTCTCT
1 TTTTCTTTTTCTCT
7434731 TTTTCATTTTTCTCT
1 TTTTC-TTTTTCTCT
7434746 GTTTTC
1 -TTTTC
7434752 GGCTATAAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
14 11 0.35
15 15 0.48
16 5 0.16
ACGTcount: A:0.02, C:0.16, G:0.02, T:0.80
Consensus pattern (14 bp):
TTTTCTTTTTCTCT
Found at i:7442664 original size:30 final size:30
Alignment explanation
Indices: 7442630--7442688 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
7442620 GATTTTTTTA
** *
7442630 GGTTTTATATATTATTATGATTATTATTAT
1 GGTTTTATATAAAATTATGATAATTATTAT
*
7442660 GGTTTTATATAAAATTATTATAATTATTA
1 GGTTTTATATAAAATTATGATAATTATTA
7442689 ATTAACATTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (30 bp):
GGTTTTATATAAAATTATGATAATTATTAT
Found at i:7442719 original size:21 final size:20
Alignment explanation
Indices: 7442652--7442720 Score: 61
Period size: 21 Copynumber: 3.4 Consensus size: 20
7442642 TATTATGATT
*
7442652 ATTATTATGGTTTTATATAAA
1 ATTATTATGGTTTTATAT-TA
**
7442673 ATTATTATAATTATTA-ATTA
1 ATTATTATGGTT-TTATATTA
*
7442693 A-CATTATGGTTTTATATTA
1 ATTATTATGGTTTTATATTA
7442712 GATTATTAT
1 -ATTATTAT
7442721 TATTAGCATT
Statistics
Matches: 37, Mismatches: 7, Indels: 8
0.71 0.13 0.15
Matches are distributed among these distances:
18 3 0.08
19 11 0.30
20 3 0.08
21 17 0.46
22 3 0.08
ACGTcount: A:0.38, C:0.01, G:0.07, T:0.54
Consensus pattern (20 bp):
ATTATTATGGTTTTATATTA
Found at i:7443133 original size:12 final size:12
Alignment explanation
Indices: 7443116--7443146 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
7443106 GAAGCAGGGG
7443116 AGAAAAAGAGAA
1 AGAAAAAGAGAA
*
7443128 AGAAAAAGGGAA
1 AGAAAAAGAGAA
7443140 AGAAAAA
1 AGAAAAA
7443147 TAAAAGAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (12 bp):
AGAAAAAGAGAA
Found at i:7445718 original size:33 final size:32
Alignment explanation
Indices: 7445644--7445761 Score: 94
Period size: 33 Copynumber: 3.6 Consensus size: 32
7445634 ATGAACTTGA
* ** * **
7445644 GCCGAGAGGAGTAGAATATGGAGGTGAATATAG
1 GCCG-GAGGAGTAGAGTACAGAGGTGGATACGG
* *
7445677 GCCGGGAGGAGTAGAGTACGGCGGTGGATAC-G
1 GCC-GGAGGAGTAGAGTACAGAGGTGGATACGG
* *
7445709 GCTCTGGAGGAGTTGAGTACATAGGTGGATACGG
1 GC-C-GGAGGAGTAGAGTACAGAGGTGGATACGG
7445743 GCCGGAAGGAGTAGAGTAC
1 GCCGG-AGGAGTAGAGTAC
7445762 TGAGATAAAT
Statistics
Matches: 70, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
32 5 0.07
33 61 0.87
34 4 0.06
ACGTcount: A:0.28, C:0.12, G:0.43, T:0.17
Consensus pattern (32 bp):
GCCGGAGGAGTAGAGTACAGAGGTGGATACGG
Found at i:7447801 original size:22 final size:22
Alignment explanation
Indices: 7447767--7447830 Score: 60
Period size: 22 Copynumber: 2.9 Consensus size: 22
7447757 TCAACATTTT
*
7447767 AATAAATCA-ATAAAAATTATCA
1 AATAAAT-ATATAAAAATTATAA
*
7447789 AATAAATATATAATAA-TATAA
1 AATAAATATATAAAAATTATAA
*
7447810 AATTACATTATATAAAAATTA
1 AA-TA-AATATATAAAAATTA
7447831 CATTAAAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
21 7 0.21
22 15 0.44
23 10 0.29
24 2 0.06
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (22 bp):
AATAAATATATAAAAATTATAA
Found at i:7447824 original size:15 final size:16
Alignment explanation
Indices: 7447804--7447835 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
7447794 ATATATAATA
7447804 ATAT-AAAATTACATT
1 ATATAAAAATTACATT
7447819 ATATAAAAATTACATT
1 ATATAAAAATTACATT
7447835 A
1 A
7447836 AAAAATCACA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (16 bp):
ATATAAAAATTACATT
Found at i:7448245 original size:111 final size:113
Alignment explanation
Indices: 7447932--7448334 Score: 643
Period size: 111 Copynumber: 3.5 Consensus size: 113
7447922 GCATTACTAA
*
7447932 AAAAAAATCACAATACATTAATACACACTAAACCACTAAACACTAACAA--TATATAACCTAATC
1 AAAAAAATCACAATACACTAAT--A-ACTAAACCACTAAACACTAACAATTTATATAACCTAATC
**
7447995 TTAAATTACTAATAAAATAGCTATAAAAATATTTTTTTTAAATATATTACT
63 TTAAATTACTAATAAAATAGCTATAAAAATATTTTTTAAAAATATATTACT
7448046 AAAAAAAATCACAATACACTAATACACTAAACCACTAAACACTAACAATTTATATAACCTAATCT
1 -AAAAAAATCACAATACACTAATA-ACTAAACCACTAAACACTAACAATTTATATAACCTAATCT
*
7448111 TAAATTACTAATAAAATATCTATAAAAATATTTTTTAAAAATATATTACT
64 TAAATTACTAATAAAATAGCTATAAAAATATTTTTTAAAAATATATTACT
* *
7448161 -AAAAAATTACAATACGCTAAT-ACTAAACCACTAAACACTAACAATTTATATAACCTAATCTTA
1 AAAAAAATCACAATACACTAATAACTAAACCACTAAACACTAACAATTTATATAACCTAATCTTA
*
7448224 AATTACTAATAAAATAGCTATAAAATTATTTTTTAAAAATATATTACT
66 AATTACTAATAAAATAGCTATAAAAATATTTTTTAAAAATATATTACT
* *
7448272 AAAAAAATCACAATACACTAATACACTAAACTACTAAACACTAACAATTTATATAACCAAATC
1 AAAAAAATCACAATACACTAATA-ACTAAACCACTAAACACTAACAATTTATATAACCTAATC
7448335 AACTATAAAA
Statistics
Matches: 271, Mismatches: 12, Indels: 11
0.92 0.04 0.04
Matches are distributed among these distances:
111 88 0.32
112 19 0.07
113 44 0.16
114 37 0.14
115 83 0.31
ACGTcount: A:0.52, C:0.16, G:0.01, T:0.31
Consensus pattern (113 bp):
AAAAAAATCACAATACACTAATAACTAAACCACTAAACACTAACAATTTATATAACCTAATCTTA
AATTACTAATAAAATAGCTATAAAAATATTTTTTAAAAATATATTACT
Found at i:7448359 original size:111 final size:112
Alignment explanation
Indices: 7447932--7448408 Score: 616
Period size: 111 Copynumber: 4.3 Consensus size: 112
7447922 GCATTACTAA
*
7447932 AAAAAAATCACAATACATTAATACACACTAAACCACTAAACACTAACAA--TATATAACCTAATC
1 AAAAAAATCACAATACACTAAT--ACACTAAACCACTAAACACTAACAATTTATATAACCTAATC
**
7447995 TTAAATTACTAATAAAATAGCTATAAAAATATTTTTTTTAAATATATTACT
64 -T-AATTACTAATAAAATAGCTATAAAAATATTTTTTAAAAATATATTACT
7448046 AAAAAAAATCACAATACACTAATACACTAAACCACTAAACACTAACAATTTATATAACCTAATCT
1 -AAAAAAATCACAATACACTAATACACTAAACCACTAAACACTAACAATTTATATAACCTAATC-
*
7448111 TAAATTACTAATAAAATATCTATAAAAATATTTTTTAAAAATATATTACT
64 T-AATTACTAATAAAATAGCTATAAAAATATTTTTTAAAAATATATTACT
* *
7448161 -AAAAAATTACAATACGCTAAT--ACTAAACCACTAAACACTAACAATTTATATAACCTAATCTT
1 AAAAAAATCACAATACACTAATACACTAAACCACTAAACACTAACAATTTATATAACCTAATC-T
*
7448223 AAATTACTAATAAAATAGCTATAAAATTATTTTTTAAAAATATATTACT
65 -AATTACTAATAAAATAGCTATAAAAATATTTTTTAAAAATATATTACT
* *
7448272 AAAAAAATCACAATACACTAATACACTAAACTACTAAACACTAACAATTTATATAACCAAATC--
1 AAAAAAATCACAATACACTAATACACTAAACCACTAAACACTAACAATTTATATAACCTAATCTA
7448335 A--ACT-ATAAAAT---TAT-----T-TTTTTTAAAAATATATTATTACT
66 ATTACTAATAAAATAGCTATAAAAATATTTTTT-AAAA-ATA-TATTACT
*
7448373 AAAAAAATCGCAATACACTAATACACTAAA-CACTAA
1 AAAAAAATCACAATACACTAATACACTAAACCACTAA
7448409 CAATTTGTAA
Statistics
Matches: 340, Mismatches: 14, Indels: 31
0.88 0.04 0.08
Matches are distributed among these distances:
98 6 0.02
99 5 0.01
100 8 0.02
101 36 0.11
104 3 0.01
107 7 0.02
108 3 0.01
110 1 0.00
111 88 0.26
112 19 0.06
113 44 0.13
114 37 0.11
115 83 0.24
ACGTcount: A:0.52, C:0.16, G:0.01, T:0.31
Consensus pattern (112 bp):
AAAAAAATCACAATACACTAATACACTAAACCACTAAACACTAACAATTTATATAACCTAATCTA
ATTACTAATAAAATAGCTATAAAAATATTTTTTAAAAATATATTACT
Found at i:7449528 original size:131 final size:129
Alignment explanation
Indices: 7449260--7449514 Score: 357
Period size: 131 Copynumber: 2.0 Consensus size: 129
7449250 CAATTATTCA
* * * * *
7449260 TTTAAAAATTCTTTAAAACGAAGGCAATACTTGATGTTTGGCAATTCGGAATCGTGCCCTATCGT
1 TTTAAAAACTCTTCAAAACAAAGGCAATACTCGATGTTTAGCAATTCGGAATCGTGCCCTATCGT
* *
7449325 GCTGGGTTGCAATTTCCCGTTTGTTCAAAACAATCAAATATTCCTTTGAAATTTTACTCATGTC
66 GCTGGGTTGCAATTTCCCGTTTGTTCAAAACAATCAAATATCCCTTTGAAATTTCACTCATGTC
* *
7449389 TTTAAAAACTCTTCAAAACAAAGGTAATACTCGATGTTTAGCAATTAGGAGAATCGTGCCCTATC
1 TTTAAAAACTCTTCAAAACAAAGGCAATACTCGATGTTTAGCAATT-CG-GAATCGTGCCCTATC
* * * ** *
7449454 GTGCTGGGTTGCGATTTCCTGTTTGTTCAAAATAATTGAATATCCCTTTGGAATTTCACTC
64 GTGCTGGGTTGCAATTTCCCGTTTGTTCAAAACAATCAAATATCCCTTTGAAATTTCACTC
7449515 GTGTTTCCTA
Statistics
Matches: 109, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
129 40 0.37
130 1 0.01
131 68 0.62
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36
Consensus pattern (129 bp):
TTTAAAAACTCTTCAAAACAAAGGCAATACTCGATGTTTAGCAATTCGGAATCGTGCCCTATCGT
GCTGGGTTGCAATTTCCCGTTTGTTCAAAACAATCAAATATCCCTTTGAAATTTCACTCATGTC
Found at i:7453255 original size:25 final size:25
Alignment explanation
Indices: 7453221--7453270 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
7453211 ATACCCAATG
7453221 AAGTCAACTGAAAAACTGTTGTTTT
1 AAGTCAACTGAAAAACTGTTGTTTT
*
7453246 AAGTCAACTGAAAACCTGTTGTTTT
1 AAGTCAACTGAAAAACTGTTGTTTT
7453271 CTTAAGAGCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36
Consensus pattern (25 bp):
AAGTCAACTGAAAAACTGTTGTTTT
Found at i:7456518 original size:3 final size:3
Alignment explanation
Indices: 7456512--7456579 Score: 136
Period size: 3 Copynumber: 22.7 Consensus size: 3
7456502 ATAATAATAA
7456512 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG
1 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG
7456560 TAG TAG TAG TAG TAG TAG TA
1 TAG TAG TAG TAG TAG TAG TA
7456580 ACAACAGTGG
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 65 1.00
ACGTcount: A:0.34, C:0.00, G:0.32, T:0.34
Consensus pattern (3 bp):
TAG
Found at i:7460154 original size:25 final size:26
Alignment explanation
Indices: 7460126--7460181 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
7460116 CATTTAGGTC
**
7460126 AATTTAAC-CCTAGGGGTATTTCAGT
1 AATTTAACACCTAGGGGTATAACAGT
**
7460151 AATTTTGCACCTAGGGGTATAACAGT
1 AATTTAACACCTAGGGGTATAACAGT
7460177 AATTT
1 AATTT
7460182 TCCATGCATA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
25 6 0.23
26 20 0.77
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36
Consensus pattern (26 bp):
AATTTAACACCTAGGGGTATAACAGT
Found at i:7461687 original size:26 final size:26
Alignment explanation
Indices: 7461651--7461706 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
7461641 TGAAATTCCA
*
7461651 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
7461677 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
7461703 ATCA
1 ATCA
7461707 ATTTGTATCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.38, C:0.27, G:0.05, T:0.30
Consensus pattern (26 bp):
ATCATGAAACATTTACCTAACCCATT
Found at i:7466862 original size:131 final size:129
Alignment explanation
Indices: 7466694--7466952 Score: 428
Period size: 131 Copynumber: 2.0 Consensus size: 129
7466684 AATTTAGAGA
* *
7466694 ACATGAGTGAAATTCTAAACGAATATTCGATTATTTTGAACAAACAGGAAATCGCAACCTAGCAC
1 ACATGAGTGAAATTCCAAACGAATATTCGATTATTTTGAACAAACAGGAAATCGCAACCCAGCAC
* *
7466759 GATAGGGCACGATTGCCCGAATTGCCAAACATCGAGTATTACCTTCGTTTTGAAGAGTCTTTAAA
66 GATAGGGCACGATT-CCCGAATTGCCAAACATCGAGTATTACCTTCGTTTTAAAGAAT-TTTAAA
7466824 G
129 G
* * *
7466825 ACATGAGTGAAATTCCAAAGGAATATTCGATTGTTTTGAACAAACGGGAAATCGCAACCCAGCAC
1 ACATGAGTGAAATTCCAAACGAATATTCGATTATTTTGAACAAACAGGAAATCGCAACCCAGCAC
*
7466890 GATAGGGCACGATTCCCGAATTGCCAAACATCGAGTATTGCCTTCGTTTTAAAGAATTTTAAA
66 GATAGGGCACGATTCCCGAATTGCCAAACATCGAGTATTACCTTCGTTTTAAAGAATTTTAAA
7466953 TGAATAATTA
Statistics
Matches: 120, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
129 6 0.05
130 40 0.33
131 74 0.62
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.26
Consensus pattern (129 bp):
ACATGAGTGAAATTCCAAACGAATATTCGATTATTTTGAACAAACAGGAAATCGCAACCCAGCAC
GATAGGGCACGATTCCCGAATTGCCAAACATCGAGTATTACCTTCGTTTTAAAGAATTTTAAAG
Found at i:7467464 original size:16 final size:15
Alignment explanation
Indices: 7467443--7467488 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 15
7467433 CTAGAGATAT
7467443 ATACATAATTATTAAA
1 ATACAT-ATTATTAAA
*
7467459 ATACATGTTA-TAAA
1 ATACATATTATTAAA
*
7467473 ATAAATATT-TTAAA
1 ATACATATTATTAAA
7467487 AT
1 AT
7467489 CGAATAATGT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 17 0.65
15 3 0.12
16 6 0.23
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.39
Consensus pattern (15 bp):
ATACATATTATTAAA
Found at i:7472572 original size:22 final size:23
Alignment explanation
Indices: 7472543--7472676 Score: 116
Period size: 22 Copynumber: 5.7 Consensus size: 23
7472533 CACTAATGAA
7472543 CAGAGAGCACTGAAGTGCTATAT
1 CAGAGAGCACTGAAGTGCTATAT
*
7472566 -AGAGAGCAC-AAATGTGCTA-AT
1 CAGAGAGCACTGAA-GTGCTATAT
*
7472587 CAGAGAGCACTGATGTGCTAAATAT
1 CAGAGAGCACTGAAGTGCT--ATAT
*
7472612 CAGAGAGCAC-AAATGTGCTA-AT
1 CAGAGAGCACTGAA-GTGCTATAT
* *
7472634 CAAAGAGCACTGACGTGCTAATATT
1 CAGAGAGCACTGAAGTGCT-ATA-T
7472659 CAGAGAGCATGCTGAAGT
1 CAGAGAGCA--CTGAAGT
7472677 CCCTTAACAT
Statistics
Matches: 88, Mismatches: 10, Indels: 22
0.73 0.08 0.18
Matches are distributed among these distances:
21 4 0.05
22 45 0.51
23 4 0.05
24 3 0.03
25 26 0.30
27 6 0.07
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.21
Consensus pattern (23 bp):
CAGAGAGCACTGAAGTGCTATAT
Found at i:7472620 original size:47 final size:46
Alignment explanation
Indices: 7472543--7472667 Score: 191
Period size: 47 Copynumber: 2.7 Consensus size: 46
7472533 CACTAATGAA
7472543 CAGAGAGCACTGAAGTGCT-ATAT-AGAGAGCACAAATGTGCTAAT
1 CAGAGAGCACTGAAGTGCTAATATCAGAGAGCACAAATGTGCTAAT
*
7472587 CAGAGAGCACTGATGTGCTAAATATCAGAGAGCACAAATGTGCTAAT
1 CAGAGAGCACTGAAGTGCT-AATATCAGAGAGCACAAATGTGCTAAT
* *
7472634 CAAAGAGCACTGACGTGCTAATATTCAGAGAGCA
1 CAGAGAGCACTGAAGTGCTAATA-TCAGAGAGCA
7472668 TGCTGAAGTC
Statistics
Matches: 74, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
44 18 0.24
46 8 0.11
47 48 0.65
ACGTcount: A:0.38, C:0.18, G:0.24, T:0.20
Consensus pattern (46 bp):
CAGAGAGCACTGAAGTGCTAATATCAGAGAGCACAAATGTGCTAAT
Found at i:7476800 original size:893 final size:895
Alignment explanation
Indices: 7475078--7477651 Score: 4761
Period size: 922 Copynumber: 2.9 Consensus size: 895
7475068 CCCTTTTCAA
*
7475078 TTTAGTCCTTTTTATTTAATTAACCACCCAAAAGTCAAAATTTTCTGACTAAATTTTAATACTAC
1 TTTAGTCCTTTTTATTTAATTAACCACCCAAACGTCAAAATTTTCTGACTAAATTTTAATACTAC
7475143 CTCACCAACACTCCATAAATATTTCTAAAAATATTTATGGCTCGATTTATGAAGTCGAGGTCTCG
66 CTCACCAACACTCCATAAATATTTCTAAAAATATTTATGGCTCGATTTATGAAGTCGAGGTCTCG
7475208 ATACCTCATTCTCGACCCAATTTACCTAATTAATTCTTTTAAATCACCAAATTCACTAATTCAAA
131 ATACCTCATTCTCGACCCAATTTACCTAATTAATTCTTTTAAATCACCAAATTCACTAATTCAAA
7475273 AATGCTTTTATATTCGCATTTGACTCATAGGTATTAATTTATTAAATTTTTAACTCACCCGTCGG
196 AATGCTTTTATATTCGCATTTGACTCATAGGTATTAATTTATTAAATTTTTAACTCACCCGTCGG
7475338 ATTTGGTGATCTCAAATCTCTATT-CCGATACCACTG-AAATTACCAATTTTCCAATTTTGCCCT
261 ATTTGGTGATCTCAAATCTCTATTCCCGATACCACTGAAAATTACCAATTTTCCAATTTTGCCCT
*
7475401 TATTTCA-TCTATTTCCTGA-TTTTCTCAGCTATTGCCG-CCAAAATATCTCCTTTAGGACTATT
326 TATTTCATTC-ATTTCCTGATTTTTCTCAGCTATTGCTGCCCAAAATATCTCCTTTAGGACTATT
7475463 TTCACTTTAGGTCCTTCCTCATTTGACAATTGAGCTATTTAATCCTTCTAGCAACTTTTACACCC
390 TTCACTTTAGGTCCTTCCTCATTTGACAATTGAGCTATTTAATCCTTCTAGCAACTTTTACACCC
7475528 TTTTCAATTTAGTCC-TTTTATTTAATTAACCA-CCAAAAGTCAAAATTTTCTGACTAAATTTTA
455 TTTTCAATTTAGTCCTTTTTATTTAATTAACCACCCAAAAGTCAAAATTTTCTGACTAAATTTTA
7475591 ATACTACCTCACCAACACTCCATAAATATTTCTAAAAATATTTATGGCTCGATTTATGAAGTCGA
520 ATACTACCTCACCAACACTCCATAAATATTTCTAAAAATATTTATGGCTCGATTTATGAAGTCGA
7475656 GGTCTCGATACCTCATTCTCGACCCAATTTACCTAATTAATTCTTTTAAATCACCAAATTCACTA
585 GGTCTCGATACCTCATTCTCGACCCAATTTACCTAATTAATTCTTTTAAATCACCAAATTCACTA
7475721 ATTCAAAAATGCTTTTATATTCGCATTTGACTCATAGGTATTAATTTATTAAATTTTTAACTCAC
650 ATTCAAAAATGCTTTTATATTCGCATTTGACTCATAGGTATTAATTTATTAAATTTTTAACTCAC
7475786 CCGTCGGATTTGGTGATCTCAAATCTCTATTCCCGATACCACTGAAAATTACCAATTTTCCAATT
715 CCGTCGGATTTGGTGATCTCAAATCTCTATTCCCGATACCACTGAAAATTACCAATTTTCCAATT
7475851 TTGCCCTTATTTCATCCATTTCCTGATTTTTCTCAGCTATTGCCGCCCAAAATATCTCCTTTAGG
780 TTGCCCTTATTTCATCCATTTCCTGATTTTTCTCAGCTATTGCCGCCCAAAATATCTCCTTTAGG
7475916 ACTATTTTCACTTTAGGTCCTTCCTCATTTGACAATTGAGCTATTTAAT-C
845 ACTATTTTCACTTTAGGTCCTTCCTCATTTGACAATTGAGCTATTTAATCC
7475966 -TTAGTCCTTTTTATTTAATTAACCACCCAAACGTCAAAATTTTCTGACTAAATTTTAATACTAC
1 TTTAGTCCTTTTTATTTAATTAACCACCCAAACGTCAAAATTTTCTGACTAAATTTTAATACTAC
7476030 CTCACCAACACTCCATAAATATTTCTAAAAATATTTATGGCTCGATTTATGAAGTCGAGGTCTCG
66 CTCACCAACACTCCATAAATATTTCTAAAAATATTTATGGCTCGATTTATGAAGTCGAGGTCTCG
7476095 ATACCTCATTCTCGACCCAATTTACCTAATTAATTCTTTTAAATCACCAAATTCACTAATTCAAA
131 ATACCTCATTCTCGACCCAATTTACCTAATTAATTCTTTTAAATCACCAAATTCACTAATTCAAA
7476160 AATGCTTTTATATTCGCATTTGACTCATAGGTATTAATTTATTAAATTTTTAACTCACCCGTCGG
196 AATGCTTTTATATTCGCATTTGACTCATAGGTATTAATTTATTAAATTTTTAACTCACCCGTCGG
*
7476225 ATTTGGTGATCTCAAATCTCTATTCCCGATACCACTGAAAATTACCAATTTTCCAATTTTGCCTT
261 ATTTGGTGATCTCAAATCTCTATTCCCGATACCACTGAAAATTACCAATTTTCCAATTTTGCCCT
7476290 TATTTCATTCATTTCCTGATTTTTCTCAGCTATTGCTGCCCAAAATATCTCCTTTAGGACTATTT
326 TATTTCATTCATTTCCTGATTTTTCTCAGCTATTGCTGCCCAAAATATCTCCTTTAGGACTATTT
*
7476355 TCACTTTAGGTCCTTCCTCATTTGACAATTGATCTATTTAATCCTTCTAGCAACTTTTACACCCT
391 TCACTTTAGGTCCTTCCTCATTTGACAATTGAGCTATTTAATCCTTCTAGCAACTTTTACACCCT
7476420 TTTCAATTTAGTCCTTTTTATTTAATTAACCACCCAAAAGTCAAAATTTTCTGACTAAATTTTAA
456 TTTCAATTTAGTCCTTTTTATTTAATTAACCACCCAAAAGTCAAAATTTTCTGACTAAATTTTAA
7476485 TACTACCTCACCAACACTCCATAAATATTTCTAAAAATATTTATGGCTCGATTTATGAAGTCGAG
521 TACTACCTCACCAACACTCCATAAATATTTCTAAAAATATTTATGGCTCGATTTATGAAGTCGAG
7476550 GTCTCGATACCTCATTCTCGACCCAATTTACCTAATTAATTCTTTTAAATCACCAAATTCACTAA
586 GTCTCGATACCTCATTCTCGACCCAATTTACCTAATTAATTCTTTTAAATCACCAAATTCACTAA
7476615 TTCAAAAATGCTTTTATATTCGCATTTGACTCATAGGTATTAATTTATTAAATTTTTAACTCACC
651 TTCAAAAATGCTTTTATATTCGCATTTGACTCATAGGTATTAATTTATTAAATTTTTAACTCACC
7476680 CGTCGGATTTGGTGATCTCAAATCTCTATTCCCGATACCACTGAAAATTACCAATTTTCCAATTT
716 CGTCGGATTTGGTGATCTCAAATCTCTATTCCCGATACCACTGAAAATTACCAATTTTCCAATTT
7476745 TGCCCTTATTTCATCCATTTCCTGATTTTTCTCAGCTATTGCCGCCCAAAATATCTCCTTTAGGA
781 TGCCCTTATTTCATCCATTTCCTGATTTTTCTCAGCTATTGCCGCCCAAAATATCTCCTTTAGGA
*
7476810 CTATTTTCACTTTAGGTCCTTCCTCATTTGACAATTGATCTATTTAATCC
846 CTATTTTCACTTTAGGTCCTTCCTCATTTGACAATTGAGCTATTTAATCC
7476860 TTCTAGCAACTTTTACACCCTTTTCAATTTAGTTCTTTTTATTTAATTAACCACCCAAACGTCAA
1 TT-TAG-----------------TC---------CTTTTTATTTAATTAACCACCCAAACGTCAA
7476925 AATTTTCTGACTAAATTTTAATACTACCTCACCAACACTCCATAAATATTTCTAAAAATATTTAT
39 AATTTTCTGACTAAATTTTAATACTACCTCACCAACACTCCATAAATATTTCTAAAAATATTTAT
7476990 GGCTCGATTTATGAAGTCGAGGTCTCGATACCTCATTCTCGACCCAATTTACCTAATTAATTCTT
104 GGCTCGATTTATGAAGTCGAGGTCTCGATACCTCATTCTCGACCCAATTTACCTAATTAATTCTT
7477055 TTAAATCACCAAATTCACTAATTCAAAAATGCTTTTATATTCGCATTTGACTCATAGGTATTAAT
169 TTAAATCACCAAATTCACTAATTCAAAAATGCTTTTATATTCGCATTTGACTCATAGGTATTAAT
7477120 TTATTAAATTTTTAACTCACCCGTCGGATTTGGTGATCTCAAATCTCTATTCCCGATACCACTGA
234 TTATTAAATTTTTAACTCACCCGTCGGATTTGGTGATCTCAAATCTCTATTCCCGATACCACTGA
*
7477185 AAATTACCAATTTTCCAATTTTGCCCTTATTTCATCCATTTCCTGATTTTTCTCAGCTATTGCTG
299 AAATTACCAATTTTCCAATTTTGCCCTTATTTCATTCATTTCCTGATTTTTCTCAGCTATTGCTG
7477250 CCCAAAATATCTCCTTTAGGACTATTTTCACTTTAGGTCCTTCCTCATTTGACAATTGAGCTATT
364 CCCAAAATATCTCCTTTAGGACTATTTTCACTTTAGGTCCTTCCTCATTTGACAATTGAGCTATT
7477315 TAATCCTTCTAGCAACTTTTACACCCTTTTCAATTTAGTCCTTTTTATTTAATTAACCACCCAAA
429 TAATCCTTCTAGCAACTTTTACACCCTTTTCAATTTAGTCCTTTTTATTTAATTAACCACCCAAA
*
7477380 CGTCAAAATTTTCTGACTAAATTTTAATACTACCTCACCAACACTCCATAAATATTTCTAAAAAT
494 AGTCAAAATTTTCTGACTAAATTTTAATACTACCTCACCAACACTCCATAAATATTTCTAAAAAT
7477445 ATTTATGGCTCGATTTATGAAGTCGAGGTCTCGATACCTCATTCTCGACCCAATTTACCTAATTA
559 ATTTATGGCTCGATTTATGAAGTCGAGGTCTCGATACCTCATTCTCGACCCAATTTACCTAATTA
*
7477510 ATTCTTTTAAATCACCAAATTCACTAATTCAAAAATGCTTTTACATTCGCATTTGACTCATAGGT
624 ATTCTTTTAAATCACCAAATTCACTAATTCAAAAATGCTTTTATATTCGCATTTGACTCATAGGT
7477575 ATTAATTTATTAAATTTTTAACTCACCCGTCGGATTTGGTGATCTCAAATCTCTATTCCCGATAC
689 ATTAATTTATTAAATTTTTAACTCACCCGTCGGATTTGGTGATCTCAAATCTCTATTCCCGATAC
7477640 CACTGAAAATTA
754 CACTGAAAATTA
7477652 GGCTGTTATA
Statistics
Matches: 1640, Mismatches: 10, Indels: 38
0.97 0.01 0.02
Matches are distributed among these distances:
887 282 0.17
888 12 0.01
889 42 0.03
890 19 0.01
891 104 0.06
892 17 0.01
893 404 0.25
894 1 0.00
895 1 0.00
896 3 0.00
913 2 0.00
922 753 0.46
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (895 bp):
TTTAGTCCTTTTTATTTAATTAACCACCCAAACGTCAAAATTTTCTGACTAAATTTTAATACTAC
CTCACCAACACTCCATAAATATTTCTAAAAATATTTATGGCTCGATTTATGAAGTCGAGGTCTCG
ATACCTCATTCTCGACCCAATTTACCTAATTAATTCTTTTAAATCACCAAATTCACTAATTCAAA
AATGCTTTTATATTCGCATTTGACTCATAGGTATTAATTTATTAAATTTTTAACTCACCCGTCGG
ATTTGGTGATCTCAAATCTCTATTCCCGATACCACTGAAAATTACCAATTTTCCAATTTTGCCCT
TATTTCATTCATTTCCTGATTTTTCTCAGCTATTGCTGCCCAAAATATCTCCTTTAGGACTATTT
TCACTTTAGGTCCTTCCTCATTTGACAATTGAGCTATTTAATCCTTCTAGCAACTTTTACACCCT
TTTCAATTTAGTCCTTTTTATTTAATTAACCACCCAAAAGTCAAAATTTTCTGACTAAATTTTAA
TACTACCTCACCAACACTCCATAAATATTTCTAAAAATATTTATGGCTCGATTTATGAAGTCGAG
GTCTCGATACCTCATTCTCGACCCAATTTACCTAATTAATTCTTTTAAATCACCAAATTCACTAA
TTCAAAAATGCTTTTATATTCGCATTTGACTCATAGGTATTAATTTATTAAATTTTTAACTCACC
CGTCGGATTTGGTGATCTCAAATCTCTATTCCCGATACCACTGAAAATTACCAATTTTCCAATTT
TGCCCTTATTTCATCCATTTCCTGATTTTTCTCAGCTATTGCCGCCCAAAATATCTCCTTTAGGA
CTATTTTCACTTTAGGTCCTTCCTCATTTGACAATTGAGCTATTTAATCC
Found at i:7476828 original size:461 final size:461
Alignment explanation
Indices: 7475966--7477651 Score: 3309
Period size: 461 Copynumber: 3.7 Consensus size: 461
7475956 CTATTTAATC
7475966 TTAGTCCTTTTTATTTAATTAACCACCCAAACGTCAAAATTTTCTGACTAAATTTTAATACTACC
1 TTAGTCCTTTTTATTTAATTAACCACCCAAACGTCAAAATTTTCTGACTAAATTTTAATACTACC
7476031 TCACCAACACTCCATAAATATTTCTAAAAATATTTATGGCTCGATTTATGAAGTCGAGGTCTCGA
66 TCACCAACACTCCATAAATATTTCTAAAAATATTTATGGCTCGATTTATGAAGTCGAGGTCTCGA
7476096 TACCTCATTCTCGACCCAATTTACCTAATTAATTCTTTTAAATCACCAAATTCACTAATTCAAAA
131 TACCTCATTCTCGACCCAATTTACCTAATTAATTCTTTTAAATCACCAAATTCACTAATTCAAAA
7476161 ATGCTTTTATATTCGCATTTGACTCATAGGTATTAATTTATTAAATTTTTAACTCACCCGTCGGA
196 ATGCTTTTATATTCGCATTTGACTCATAGGTATTAATTTATTAAATTTTTAACTCACCCGTCGGA
*
7476226 TTTGGTGATCTCAAATCTCTATTCCCGATACCACTGAAAATTACCAATTTTCCAATTTTGCCTTT
261 TTTGGTGATCTCAAATCTCTATTCCCGATACCACTGAAAATTACCAATTTTCCAATTTTGCCCTT
*
7476291 ATTTCATTCATTTCCTGATTTTTCTCAGCTATTGCTGCCCAAAATATCTCCTTTAGGACTATTTT
326 ATTTCATCCATTTCCTGATTTTTCTCAGCTATTGCTGCCCAAAATATCTCCTTTAGGACTATTTT
7476356 CACTTTAGGTCCTTCCTCATTTGACAATTGATCTATTTAATCCTTCTAGCAACTTTTACACCCTT
391 CACTTTAGGTCCTTCCTCATTTGACAATTGATCTATTTAATCCTTCTAGCAACTTTTACACCCTT
7476421 TTCAAT
456 TTCAAT
*
7476427 TTAGTCCTTTTTATTTAATTAACCACCCAAAAGTCAAAATTTTCTGACTAAATTTTAATACTACC
1 TTAGTCCTTTTTATTTAATTAACCACCCAAACGTCAAAATTTTCTGACTAAATTTTAATACTACC
7476492 TCACCAACACTCCATAAATATTTCTAAAAATATTTATGGCTCGATTTATGAAGTCGAGGTCTCGA
66 TCACCAACACTCCATAAATATTTCTAAAAATATTTATGGCTCGATTTATGAAGTCGAGGTCTCGA
7476557 TACCTCATTCTCGACCCAATTTACCTAATTAATTCTTTTAAATCACCAAATTCACTAATTCAAAA
131 TACCTCATTCTCGACCCAATTTACCTAATTAATTCTTTTAAATCACCAAATTCACTAATTCAAAA
7476622 ATGCTTTTATATTCGCATTTGACTCATAGGTATTAATTTATTAAATTTTTAACTCACCCGTCGGA
196 ATGCTTTTATATTCGCATTTGACTCATAGGTATTAATTTATTAAATTTTTAACTCACCCGTCGGA
7476687 TTTGGTGATCTCAAATCTCTATTCCCGATACCACTGAAAATTACCAATTTTCCAATTTTGCCCTT
261 TTTGGTGATCTCAAATCTCTATTCCCGATACCACTGAAAATTACCAATTTTCCAATTTTGCCCTT
*
7476752 ATTTCATCCATTTCCTGATTTTTCTCAGCTATTGCCGCCCAAAATATCTCCTTTAGGACTATTTT
326 ATTTCATCCATTTCCTGATTTTTCTCAGCTATTGCTGCCCAAAATATCTCCTTTAGGACTATTTT
7476817 CACTTTAGGTCCTTCCTCATTTGACAATTGATCTATTTAATCCTTCTAGCAACTTTTACACCCTT
391 CACTTTAGGTCCTTCCTCATTTGACAATTGATCTATTTAATCCTTCTAGCAACTTTTACACCCTT
7476882 TTCAAT
456 TTCAAT
*
7476888 TTAGTTCTTTTTATTTAATTAACCACCCAAACGTCAAAATTTTCTGACTAAATTTTAATACTACC
1 TTAGTCCTTTTTATTTAATTAACCACCCAAACGTCAAAATTTTCTGACTAAATTTTAATACTACC
7476953 TCACCAACACTCCATAAATATTTCTAAAAATATTTATGGCTCGATTTATGAAGTCGAGGTCTCGA
66 TCACCAACACTCCATAAATATTTCTAAAAATATTTATGGCTCGATTTATGAAGTCGAGGTCTCGA
7477018 TACCTCATTCTCGACCCAATTTACCTAATTAATTCTTTTAAATCACCAAATTCACTAATTCAAAA
131 TACCTCATTCTCGACCCAATTTACCTAATTAATTCTTTTAAATCACCAAATTCACTAATTCAAAA
7477083 ATGCTTTTATATTCGCATTTGACTCATAGGTATTAATTTATTAAATTTTTAACTCACCCGTCGGA
196 ATGCTTTTATATTCGCATTTGACTCATAGGTATTAATTTATTAAATTTTTAACTCACCCGTCGGA
7477148 TTTGGTGATCTCAAATCTCTATTCCCGATACCACTGAAAATTACCAATTTTCCAATTTTGCCCTT
261 TTTGGTGATCTCAAATCTCTATTCCCGATACCACTGAAAATTACCAATTTTCCAATTTTGCCCTT
7477213 ATTTCATCCATTTCCTGATTTTTCTCAGCTATTGCTGCCCAAAATATCTCCTTTAGGACTATTTT
326 ATTTCATCCATTTCCTGATTTTTCTCAGCTATTGCTGCCCAAAATATCTCCTTTAGGACTATTTT
*
7477278 CACTTTAGGTCCTTCCTCATTTGACAATTGAGCTATTTAATCCTTCTAGCAACTTTTACACCCTT
391 CACTTTAGGTCCTTCCTCATTTGACAATTGATCTATTTAATCCTTCTAGCAACTTTTACACCCTT
7477343 TTCAAT
456 TTCAAT
7477349 TTAGTCCTTTTTATTTAATTAACCACCCAAACGTCAAAATTTTCTGACTAAATTTTAATACTACC
1 TTAGTCCTTTTTATTTAATTAACCACCCAAACGTCAAAATTTTCTGACTAAATTTTAATACTACC
7477414 TCACCAACACTCCATAAATATTTCTAAAAATATTTATGGCTCGATTTATGAAGTCGAGGTCTCGA
66 TCACCAACACTCCATAAATATTTCTAAAAATATTTATGGCTCGATTTATGAAGTCGAGGTCTCGA
7477479 TACCTCATTCTCGACCCAATTTACCTAATTAATTCTTTTAAATCACCAAATTCACTAATTCAAAA
131 TACCTCATTCTCGACCCAATTTACCTAATTAATTCTTTTAAATCACCAAATTCACTAATTCAAAA
*
7477544 ATGCTTTTACATTCGCATTTGACTCATAGGTATTAATTTATTAAATTTTTAACTCACCCGTCGGA
196 ATGCTTTTATATTCGCATTTGACTCATAGGTATTAATTTATTAAATTTTTAACTCACCCGTCGGA
7477609 TTTGGTGATCTCAAATCTCTATTCCCGATACCACTGAAAATTA
261 TTTGGTGATCTCAAATCTCTATTCCCGATACCACTGAAAATTA
7477652 GGCTGTTATA
Statistics
Matches: 1215, Mismatches: 10, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
461 1215 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (461 bp):
TTAGTCCTTTTTATTTAATTAACCACCCAAACGTCAAAATTTTCTGACTAAATTTTAATACTACC
TCACCAACACTCCATAAATATTTCTAAAAATATTTATGGCTCGATTTATGAAGTCGAGGTCTCGA
TACCTCATTCTCGACCCAATTTACCTAATTAATTCTTTTAAATCACCAAATTCACTAATTCAAAA
ATGCTTTTATATTCGCATTTGACTCATAGGTATTAATTTATTAAATTTTTAACTCACCCGTCGGA
TTTGGTGATCTCAAATCTCTATTCCCGATACCACTGAAAATTACCAATTTTCCAATTTTGCCCTT
ATTTCATCCATTTCCTGATTTTTCTCAGCTATTGCTGCCCAAAATATCTCCTTTAGGACTATTTT
CACTTTAGGTCCTTCCTCATTTGACAATTGATCTATTTAATCCTTCTAGCAACTTTTACACCCTT
TTCAAT
Found at i:7479365 original size:18 final size:18
Alignment explanation
Indices: 7479342--7479379 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
7479332 GTAATAAAAT
7479342 ATGTATAATAAA-ATTAAA
1 ATGTATAA-AAATATTAAA
7479360 ATGTATAAAAATATTAAA
1 ATGTATAAAAATATTAAA
7479378 AT
1 AT
7479380 AAAATTTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 3 0.16
18 16 0.84
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (18 bp):
ATGTATAAAAATATTAAA
Found at i:7492932 original size:16 final size:16
Alignment explanation
Indices: 7492899--7492945 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
7492889 GTTATTATTC
*
7492899 TAAATATTA-AAAAAAT
1 TAAA-ATTATAAAATAT
*
7492915 TATAATTATAAAATAT
1 TAAAATTATAAAATAT
*
7492931 TAAAAATATAAAATA
1 TAAAATTATAAAATA
7492946 AAATGATTCA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
15 4 0.15
16 22 0.85
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (16 bp):
TAAAATTATAAAATAT
Found at i:7521312 original size:151 final size:151
Alignment explanation
Indices: 7521057--7521329 Score: 449
Period size: 151 Copynumber: 1.8 Consensus size: 151
7521047 ATGTGATCAC
* ** *
7521057 CCGTGTCCAAGAACTTGGACATTTTGTTTATGATGTCAGCATGCATTTCAGGGCACACCGTCAAG
1 CCGTGTCCAAGAACTTGGACATTCTGTTTATGACATCAGCATGCATTTCAGGGCACACCGCCAAG
*
7521122 ACACACGCCCGTGTGCTAGGCCGTGCCCTCCACACGGTTGAGACACACGACCGTGTCACGGGCTA
66 ACACACGCCCGTGTGCTAGGCCGTACCCTCCACACGGTTGAGACACACGACCGTGTCACGGGCTA
7521187 GGGACACGGGCATGTGCTCGG
131 GGGACACGGGCATGTGCTCGG
* *
7521208 CCGTGTCCAAGAACTTGGACATTCTGTTTATGACATCAGTATGCATTT-AGGGGCACACGGCCAA
1 CCGTGTCCAAGAACTTGGACATTCTGTTTATGACATCAGCATGCATTTCA-GGGCACACCGCCAA
* *
7521272 GACACACGCCTGTGTGCTAGGCCGTACCCTCCACACGGTTGAGACACACGACTGTGTC
65 GACACACGCCCGTGTGCTAGGCCGTACCCTCCACACGGTTGAGACACACGACCGTGTC
7521330 TCTACCCGTG
Statistics
Matches: 112, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
150 1 0.01
151 111 0.99
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (151 bp):
CCGTGTCCAAGAACTTGGACATTCTGTTTATGACATCAGCATGCATTTCAGGGCACACCGCCAAG
ACACACGCCCGTGTGCTAGGCCGTACCCTCCACACGGTTGAGACACACGACCGTGTCACGGGCTA
GGGACACGGGCATGTGCTCGG
Found at i:7524493 original size:20 final size:20
Alignment explanation
Indices: 7524468--7524506 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7524458 TTTTTTTTCA
7524468 ATTTTTTAAAAATAAAAATT
1 ATTTTTTAAAAATAAAAATT
* *
7524488 ATTTTTTGAAAATGAAAAT
1 ATTTTTTAAAAATAAAAAT
7524507 GGAAAATTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (20 bp):
ATTTTTTAAAAATAAAAATT
Found at i:7525152 original size:23 final size:23
Alignment explanation
Indices: 7525126--7525169 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
7525116 AAATAAATAC
*
7525126 TCATA-TTTATATTATTAAAATTT
1 TCATATTTTATACTA-TAAAATTT
7525149 TCATATTTTATACTATAAAAT
1 TCATATTTTATACTATAAAAT
7525170 ATTTATTGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (23 bp):
TCATATTTTATACTATAAAATTT
Found at i:7532407 original size:16 final size:17
Alignment explanation
Indices: 7532379--7532412 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
7532369 TTAAACAAGT
*
7532379 ATAAAAGACAAAATAAA
1 ATAAAAGACAAAACAAA
7532396 ATAAAA-ACAAAACAAA
1 ATAAAAGACAAAACAAA
7532412 A
1 A
7532413 CATTTTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.79, C:0.09, G:0.03, T:0.09
Consensus pattern (17 bp):
ATAAAAGACAAAACAAA
Found at i:7537240 original size:12 final size:11
Alignment explanation
Indices: 7537202--7537244 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 11
7537192 GTATATTTAC
7537202 TTATTATATAAG
1 TTATTAT-TAAG
7537214 TATATTATTAAG
1 T-TATTATTAAG
*
7537226 TTATTATTATTG
1 TTATTATTA-AG
7537238 TTATTAT
1 TTATTAT
7537245 ATATATATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
11 8 0.29
12 14 0.50
13 6 0.21
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.58
Consensus pattern (11 bp):
TTATTATTAAG
Found at i:7537972 original size:3 final size:3
Alignment explanation
Indices: 7537964--7537996 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
7537954 GAATGGTAAG
7537964 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7537997 GGTATTGAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:7538409 original size:6 final size:6
Alignment explanation
Indices: 7538398--7538424 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
7538388 TGTATACCGC
7538398 TACTGT TACTGT TACTGT TACTGT TAC
1 TACTGT TACTGT TACTGT TACTGT TAC
7538425 CCTTACGGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.48
Consensus pattern (6 bp):
TACTGT
Found at i:7541825 original size:58 final size:57
Alignment explanation
Indices: 7541735--7541899 Score: 243
Period size: 51 Copynumber: 3.0 Consensus size: 57
7541725 ACTTCTGATC
* *
7541735 AGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAGTGATAAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGA-AAGTGACA
7541793 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATC------AGTGACA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGAAAGTGACA
*
7541844 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAGTGA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGA-AAGTGA
7541900 TAAATGTGAT
Statistics
Matches: 97, Mismatches: 3, Indels: 14
0.85 0.03 0.12
Matches are distributed among these distances:
51 50 0.52
58 47 0.48
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.28
Consensus pattern (57 bp):
AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGAAAGTGACA
Found at i:7544528 original size:13 final size:13
Alignment explanation
Indices: 7544512--7544537 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7544502 CTTTGCATAC
7544512 TGTCTTCAACAGG
1 TGTCTTCAACAGG
7544525 TGTCTTCAACAGG
1 TGTCTTCAACAGG
7544538 CTCGCAACTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (13 bp):
TGTCTTCAACAGG
Found at i:7556009 original size:6 final size:7
Alignment explanation
Indices: 7555992--7556018 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
7555982 TTTCCCCTTC
7555992 TTTTTTG
1 TTTTTTG
7555999 TTTTTTG
1 TTTTTTG
7556006 TTTTTTG
1 TTTTTTG
7556013 TTTTTT
1 TTTTTT
7556019 AACTTTTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (7 bp):
TTTTTTG
Found at i:7558163 original size:23 final size:23
Alignment explanation
Indices: 7558137--7558180 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
7558127 TAAAAATTAT
7558137 TTTATTAATATTTTACTTAGATA
1 TTTATTAATATTTTACTTAGATA
* * *
7558160 TTTATTATTGTTTTATTTAGA
1 TTTATTAATATTTTACTTAGA
7558181 AAATGGTAGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.30, C:0.02, G:0.07, T:0.61
Consensus pattern (23 bp):
TTTATTAATATTTTACTTAGATA
Found at i:7562003 original size:12 final size:12
Alignment explanation
Indices: 7561988--7562018 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
7561978 TTCTCTTTTA
7561988 TTTTTCTTTCCC
1 TTTTTCTTTCCC
*
7562000 TTTTTCTTTCTC
1 TTTTTCTTTCCC
7562012 TTTTTCT
1 TTTTTCT
7562019 CTCCTGCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTTCTTTCCC
Found at i:7562119 original size:16 final size:16
Alignment explanation
Indices: 7562098--7562128 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7562088 TTTATTATTT
7562098 TATTAACATAATATAA
1 TATTAACATAATATAA
*
7562114 TATTAATATAATATA
1 TATTAACATAATATA
7562129 TTAAAATATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
TATTAACATAATATAA
Found at i:7562198 original size:28 final size:28
Alignment explanation
Indices: 7562158--7562213 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
7562148 AATATTAAGT
7562158 AAATTAATAATTATATAACAAGTGTACA
1 AAATTAATAATTATATAACAAGTGTACA
7562186 AAATTAATAATTATATAACAAGTGTACA
1 AAATTAATAATTATATAACAAGTGTACA
7562214 TATTTATATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.54, C:0.07, G:0.07, T:0.32
Consensus pattern (28 bp):
AAATTAATAATTATATAACAAGTGTACA
Found at i:7570256 original size:14 final size:15
Alignment explanation
Indices: 7570229--7570258 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
7570219 ACTTAGTAGG
7570229 ACTAAAAGAATTATA
1 ACTAAAAGAATTATA
7570244 ACTAAAA-AATTATA
1 ACTAAAAGAATTATA
7570258 A
1 A
7570259 TTGTAATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.63, C:0.07, G:0.03, T:0.27
Consensus pattern (15 bp):
ACTAAAAGAATTATA
Found at i:7598334 original size:108 final size:106
Alignment explanation
Indices: 7598105--7598476 Score: 328
Period size: 108 Copynumber: 3.5 Consensus size: 106
7598095 TGTGTTAGCT
* * * *
7598105 AGTAAATGGTTGGCACCAAGTACATTTTTAGGGCT-CCAATA-CA-TTTTTTT-GGGGGACACTG
1 AGTAGATGGTCGGCACCAAGTACATTTTT-CGACTCCCAA-AGCACTTTTTTTGGGGGGACACTG
* * * * * *
7598166 ATGGCAGGCACCAGTATCACTTAAAAAAAATTTGGGTACTGGCT
64 ATGACCGCCACCAGTGTCA-TTAAAAAAAATTTGGGTGCTGGCA
* * * * * **
7598210 AGTAAATGATCGGCACCAAGTATATTTTTCGGCTCCCAAGGCACATTTTTTT-TTGGGACACT-A
1 AGTAGATGGTCGGCACCAAGTACATTTTTCGACTCCCAAAGCAC-TTTTTTTGGGGGGACACTGA
*
7598273 GTGACTGCCACCAGTGTCATTAAAAAAAAACTTTGGGTGCTGGCA
65 -TGACCGCCACCAGTGTCATT-AAAAAAAA-TTTGGGTGCTGGCA
* * *
7598318 AGTAGATGGCCGGCACCAAGTACATTTTTCGACTCCTAAAGTACTTTTTTTGGGGGGGGACACTG
1 AGTAGATGGTCGGCACCAAGTACATTTTTCGACTCCCAAAGCACTTTTTTT--GGGGGGACACTG
* ** **
7598383 ATGGCCGGTACCAAAGTCATTTAAAAAAAA-TTGGGTGCTGGCA
64 ATGACCGCCACCAGTGTCA-TTAAAAAAAATTTGGGTGCTGGCA
* * *
7598426 AGTAGATAGTCGGCACCAAGTACATTTTTTC-ACTTCCAATGCACTTTTTTT
1 AGTAGATGGTCGGCACCAAGTACA-TTTTTCGACTCCCAAAGCACTTTTTTT
7598477 TGTTACTTTG
Statistics
Matches: 219, Mismatches: 35, Indels: 23
0.79 0.13 0.08
Matches are distributed among these distances:
104 4 0.02
105 32 0.15
106 3 0.01
107 44 0.20
108 99 0.45
109 6 0.03
110 28 0.13
111 3 0.01
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (106 bp):
AGTAGATGGTCGGCACCAAGTACATTTTTCGACTCCCAAAGCACTTTTTTTGGGGGGACACTGAT
GACCGCCACCAGTGTCATTAAAAAAAATTTGGGTGCTGGCA
Found at i:7598781 original size:26 final size:27
Alignment explanation
Indices: 7598752--7598816 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
7598742 ATTGAAAGTG
*
7598752 TTTTGTAGTGTATCATTA-A-ATGAGTT
1 TTTTGTAGTGTATCA-TAGATAAGAGTT
* *
7598778 TTTTGTAGTGGATTATAGATAAGAGTT
1 TTTTGTAGTGTATCATAGATAAGAGTT
7598805 TTTTGTAGTGTA
1 TTTTGTAGTGTA
7598817 CAACCGAATT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
25 2 0.06
26 14 0.42
27 17 0.52
ACGTcount: A:0.26, C:0.02, G:0.23, T:0.49
Consensus pattern (27 bp):
TTTTGTAGTGTATCATAGATAAGAGTT
Found at i:7601065 original size:39 final size:39
Alignment explanation
Indices: 7601019--7601196 Score: 302
Period size: 39 Copynumber: 4.6 Consensus size: 39
7601009 CTTTGATGAA
7601019 CTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGTG
1 CTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGTG
*
7601058 CTTCAGTTAGCCTTCGGGCTTTCGTTTAGCACTTATGTG
1 CTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGTG
* *
7601097 CTTCAGTTAGCCTCCGGGCTTCCGTTTAGCATTTATGTG
1 CTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGTG
7601136 CTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGTG
1 CTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGTG
* **
7601175 CTTCAGCTAGATTTCGGGCTTC
1 CTTCAGTTAGCCTTCGGGCTTC
7601197 AGATCACGAT
Statistics
Matches: 130, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 130 1.00
ACGTcount: A:0.13, C:0.25, G:0.23, T:0.39
Consensus pattern (39 bp):
CTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGTG
Found at i:7602241 original size:89 final size:88
Alignment explanation
Indices: 7602146--7602532 Score: 304
Period size: 90 Copynumber: 4.3 Consensus size: 88
7602136 TTTCTTAGAA
7602146 TGTTTGTA-TTTTTTGTATCTGTAAATTTAATTTAGTCCGTATTATATGTAGTTTGAAATTAAAA
1 TGTTTGTAGTTTTTTGTAT-TGTAAATTTAATTTAGTCCGTATTATATGTAGTTTGAAATTAAAA
7602210 TTTTCGTGTATTAATTTTACCTATC
65 TTTTCGTGTATTAATTTTACC-ATC
** * * * * * * *
7602235 CATTTGTAGTTTGTTGGT-TGTTTAAATTTAATTTAGTCTGTGTTATATATAGTTTGGATTTAAA
1 TGTTTGTAGTTT-TTTGTAT-TGTAAATTTAATTTAGTCCGTATTATATGTAGTTTGAAATTAAA
* * *
7602299 ATTTCCGTGCACTAATTTTATCCATC
64 ATTTTCGTGTATTAATTTTA-CCATC
* * ** * ** *
7602325 TGTTTTTAGTTTGTTGGGTGGTTAAATTTAATTTAGTTTGTATTATATGTAGTTTG-AATATAAG
1 TGTTTGTAGTTTTTTGTATTG-TAAATTTAATTTAGTCCGTATTATATGTAGTTTGAAAT-TAAA
*
7602389 ATTTTCGTGTATTAATTATACCCATC
64 ATTTTCGTGTATTAATTTTA-CCATC
* * * * * * * *
7602415 TGTTTGTAGTTTGTTAGGAGTT-TAAATTTAATTTAGTGCGTATTAT-TTTTGTTTGAATTTTAT
1 TGTTTGTAGTTT-TTTGTA-TTGTAAATTTAATTTAGTCCGTATTATATGTAGTTTGAAATTAAA
* * *
7602478 ATTTTTGTGTATTAATATTCTA-GA-A
64 ATTTTCGTGTATTAAT-TT-TACCATC
7602503 TGTTTGTA-TTTTATTGTATCTGTAAATTTA
1 TGTTTGTAGTTTT-TTGTAT-TGTAAATTTA
7602533 TTTTGTTGTG
Statistics
Matches: 235, Mismatches: 49, Indels: 29
0.75 0.16 0.09
Matches are distributed among these distances:
86 2 0.01
87 7 0.03
88 16 0.07
89 35 0.15
90 163 0.69
91 11 0.05
92 1 0.00
ACGTcount: A:0.25, C:0.06, G:0.16, T:0.53
Consensus pattern (88 bp):
TGTTTGTAGTTTTTTGTATTGTAAATTTAATTTAGTCCGTATTATATGTAGTTTGAAATTAAAAT
TTTCGTGTATTAATTTTACCATC
Found at i:7602281 original size:90 final size:87
Alignment explanation
Indices: 7602167--7602493 Score: 361
Period size: 90 Copynumber: 3.7 Consensus size: 87
7602157 TTTGTATCTG
*
7602167 TAAATTTAATTTAGTCCGTATTATATGTAGTTTGAAATTAAAATTTTCGTGTATTAATTTTACCT
1 TAAATTTAATTTAGTCTGTATTATATGTAGTTTG-AATTAAAATTTTCGTGTATTAATTTTACC-
**
7602232 ATCCATTTGTAGTTTGTTGGTTGTT
64 ATCTGTTTGTAGTTTGTTGG-TGTT
* * * * * *
7602257 TAAATTTAATTTAGTCTGTGTTATATATAGTTTGGATTTAAAATTTCCGTGCACTAATTTTATCC
1 TAAATTTAATTTAGTCTGTATTATATGTAGTTT-GAATTAAAATTTTCGTGTATTAATTTTA-CC
* *
7602322 ATCTGTTTTTAGTTTGTTGGGTGGT
64 ATCTGTTTGTAGTTTGTT-GGTGTT
* * *
7602347 TAAATTTAATTTAGTTTGTATTATATGTAGTTTGAATATAAGATTTTCGTGTATTAATTATACCC
1 TAAATTTAATTTAGTCTGTATTATATGTAGTTTGAAT-TAAAATTTTCGTGTATTAATTTTA-CC
*
7602412 ATCTGTTTGTAGTTTGTTAGGAGTT
64 ATCTGTTTGTAGTTTGTT-GGTGTT
* * * * *
7602437 TAAATTTAATTTAGTGC-GTATTAT-TTTTGTTTGAATTTTATATTTTTGTGTATTAAT
1 TAAATTTAATTTAGT-CTGTATTATATGTAGTTTGAA-TTAAAATTTTCGTGTATTAAT
7602494 ATTCTAGAAT
Statistics
Matches: 200, Mismatches: 31, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
89 29 0.14
90 166 0.83
91 5 0.03
ACGTcount: A:0.26, C:0.06, G:0.16, T:0.52
Consensus pattern (87 bp):
TAAATTTAATTTAGTCTGTATTATATGTAGTTTGAATTAAAATTTTCGTGTATTAATTTTACCAT
CTGTTTGTAGTTTGTTGGTGTT
Found at i:7604920 original size:47 final size:47
Alignment explanation
Indices: 7604849--7604974 Score: 225
Period size: 47 Copynumber: 2.7 Consensus size: 47
7604839 GGATGGTTGA
* * *
7604849 GCATCCGAGCTCGTTGAGTGGAGTCCGATTTCGTGAAATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAG
7604896 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAG
7604943 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
7604975 ACCTATGGAT
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 76 1.00
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.28
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:7608386 original size:21 final size:21
Alignment explanation
Indices: 7608315--7608419 Score: 99
Period size: 21 Copynumber: 4.9 Consensus size: 21
7608305 CCAATTTCAT
*
7608315 TTCATTTAAAATATCTTTTTA
1 TTCATTTAAATTATCTTTTTA
* *
7608336 TCCATTT-AATT-T-TTTCTTT
1 TTCATTTAAATTATCTTT-TTA
7608355 TTCATTTAAATTATCTTTTTA
1 TTCATTTAAATTATCTTTTTA
*
7608376 TTCATTTAAATTTAATTTTTTCTCA
1 TTCATTTAAA-TT-ATCTTTT-T-A
7608401 TTTCATTTAAATTATCTTT
1 -TTCATTTAAATTATCTTT
7608420 CTTTCCATTT
Statistics
Matches: 68, Mismatches: 7, Indels: 15
0.76 0.08 0.17
Matches are distributed among these distances:
18 3 0.04
19 9 0.13
20 7 0.10
21 19 0.28
22 5 0.07
23 6 0.09
24 6 0.09
25 3 0.04
26 10 0.15
ACGTcount: A:0.27, C:0.11, G:0.00, T:0.62
Consensus pattern (21 bp):
TTCATTTAAATTATCTTTTTA
Found at i:7608392 original size:26 final size:27
Alignment explanation
Indices: 7608339--7608413 Score: 69
Period size: 23 Copynumber: 3.1 Consensus size: 27
7608329 CTTTTTATCC
*
7608339 ATTT-AATTTTTTCT-TTTTCATTTAA
1 ATTTAAATTTTTTCTCATTTCATTTAA
*
7608364 A-TT--ATCTTTT-T-A-TTCATTTAA
1 ATTTAAATTTTTTCTCATTTCATTTAA
7608385 ATTT-AATTTTTTCTCATTTCATTTAA
1 ATTTAAATTTTTTCTCATTTCATTTAA
7608411 ATT
1 ATT
7608414 ATCTTTCTTT
Statistics
Matches: 42, Mismatches: 3, Indels: 9
0.78 0.06 0.17
Matches are distributed among these distances:
21 10 0.24
22 3 0.07
23 12 0.29
24 3 0.07
25 2 0.05
26 12 0.29
ACGTcount: A:0.27, C:0.09, G:0.00, T:0.64
Consensus pattern (27 bp):
ATTTAAATTTTTTCTCATTTCATTTAA
Found at i:7608396 original size:40 final size:40
Alignment explanation
Indices: 7608314--7608453 Score: 120
Period size: 40 Copynumber: 3.2 Consensus size: 40
7608304 TCCAATTTCA
**
7608314 TTTCATTTAAAATATCTTTTTATCCATTTAATTTTTTCTT
1 TTTCATTTAAAATATCTTTTTATCCATTTAATTTAATCTT
* * *
7608354 TTTCATTTAAATTATCTTTTTATTCATTTAAATTTAATTTT
1 TTTCATTTAAAATATCTTTTTATCCATTT-AATTTAATCTT
*
7608395 TTCTCATTTCATTTAAATTATCTTTCTT-TCCATTTTAATTTACATTTT
1 TT-TCATTT-A---AAA-TATCTTT-TTATCCA-TTTAATTTA-ATCTT
7608443 TTTCATATTAA
1 TTTCAT-TTAA
7608454 TGCTTCTGTC
Statistics
Matches: 82, Mismatches: 7, Indels: 18
0.77 0.07 0.17
Matches are distributed among these distances:
40 27 0.33
41 10 0.12
42 6 0.07
43 1 0.01
44 1 0.01
46 2 0.02
47 21 0.26
48 14 0.17
ACGTcount: A:0.26, C:0.12, G:0.00, T:0.61
Consensus pattern (40 bp):
TTTCATTTAAAATATCTTTTTATCCATTTAATTTAATCTT
Found at i:7608409 original size:47 final size:47
Alignment explanation
Indices: 7608339--7608448 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
7608329 CTTTTTATCC
* *
7608339 ATTTAATTTTTTCT-TTTTCATTTAAATTATCTTT-TTATTCATTTAA
1 ATTTAATTTTTTCTCATTTCATTTAAATTATCTTTCTT-TCCATTTAA
*
7608385 ATTTAATTTTTTCTCATTTCATTTAAATTATCTTTCTTTCCATTTTA
1 ATTTAATTTTTTCTCATTTCATTTAAATTATCTTTCTTTCCATTTAA
7608432 ATTTACATTTTTT-TCAT
1 ATTTA-ATTTTTTCTCAT
7608449 ATTAATGCTT
Statistics
Matches: 58, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
46 14 0.24
47 35 0.60
48 9 0.16
ACGTcount: A:0.25, C:0.12, G:0.00, T:0.64
Consensus pattern (47 bp):
ATTTAATTTTTTCTCATTTCATTTAAATTATCTTTCTTTCCATTTAA
Found at i:7608428 original size:21 final size:21
Alignment explanation
Indices: 7608309--7608434 Score: 91
Period size: 21 Copynumber: 5.9 Consensus size: 21
7608299 CCAGTTCCAA
* *
7608309 TTTCATTTCATTTAAAATATC
1 TTTCTTTTCATTTAAATTATC
*
7608330 TTT-TTATCCATTT-AATT-T-
1 TTTCTT-TTCATTTAAATTATC
7608348 TTTCTTTTTCATTTAAATTATC
1 TTTC-TTTTCATTTAAATTATC
*
7608370 TTT-TTATTCATTTAAATTTAATTT
1 TTTCTT-TTCATTTAAA-TT-A-TC
7608394 TTTCTCATTTCATTTAAATTATC
1 TTTCT--TTTCATTTAAATTATC
* *
7608417 TTTCTTTCCATTTTAATT
1 TTTCTTTTCATTTAAATT
7608435 TACATTTTTT
Statistics
Matches: 84, Mismatches: 8, Indels: 26
0.71 0.07 0.22
Matches are distributed among these distances:
18 3 0.04
19 7 0.08
20 12 0.14
21 31 0.37
22 5 0.06
23 7 0.08
24 5 0.06
25 3 0.04
26 10 0.12
27 1 0.01
ACGTcount: A:0.25, C:0.13, G:0.00, T:0.62
Consensus pattern (21 bp):
TTTCTTTTCATTTAAATTATC
Found at i:7608428 original size:26 final size:25
Alignment explanation
Indices: 7608345--7608429 Score: 81
Period size: 26 Copynumber: 3.5 Consensus size: 25
7608335 ATCCATTTAA
**
7608345 TTTTTTCTTTTTCATTTAAATTATC
1 TTTTTTCCATTTCATTTAAATTATC
*
7608370 -TTTTT--A-TTCATTTAAATT-TAA
1 TTTTTTCCATTTCATTTAAATTAT-C
7608391 TTTTTTCTCATTTCATTTAAATTATC
1 TTTTTTC-CATTTCATTTAAATTATC
7608417 TTTCTTTCCATTT
1 TTT-TTTCCATTT
7608430 TAATTTACAT
Statistics
Matches: 49, Mismatches: 3, Indels: 15
0.73 0.04 0.22
Matches are distributed among these distances:
20 1 0.02
21 12 0.24
22 5 0.10
24 5 0.10
25 1 0.02
26 20 0.41
27 5 0.10
ACGTcount: A:0.22, C:0.13, G:0.00, T:0.65
Consensus pattern (25 bp):
TTTTTTCCATTTCATTTAAATTATC
Found at i:7608528 original size:44 final size:44
Alignment explanation
Indices: 7608479--7608623 Score: 199
Period size: 44 Copynumber: 3.4 Consensus size: 44
7608469 AATTTATTTC
* *
7608479 ATTTAATGTGTTTTAAATTAAATATGTATGTATATTGTATTATA
1 ATTTAACGTGCTTTAAATTAAATATGTATGTATATTGTATTATA
*
7608523 ATTTAACGAGCTTTAAATTAAATATGTATG----TTGTATTATA
1 ATTTAACGTGCTTTAAATTAAATATGTATGTATATTGTATTATA
* *
7608563 ATTTAATGTGCTTTAAATTAAATATGCATGTATATTGTATTATA
1 ATTTAACGTGCTTTAAATTAAATATGTATGTATATTGTATTATA
* *
7608607 ATTTAACATGTTTTAAA
1 ATTTAACGTGCTTTAAA
7608624 CTAGGAATAA
Statistics
Matches: 88, Mismatches: 9, Indels: 8
0.84 0.09 0.08
Matches are distributed among these distances:
40 37 0.42
44 51 0.58
ACGTcount: A:0.37, C:0.03, G:0.11, T:0.48
Consensus pattern (44 bp):
ATTTAACGTGCTTTAAATTAAATATGTATGTATATTGTATTATA
Found at i:7611101 original size:46 final size:47
Alignment explanation
Indices: 7611026--7611299 Score: 337
Period size: 46 Copynumber: 6.0 Consensus size: 47
7611016 TTATCTTCGA
* * * * **
7611026 CATGATGCCATAGTATCTTTCAACTATGGTTTTACTAGTTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTACATTTCATGT
* * **
7611072 CATGTTGCCATGGTATCTTTCAACCATGGTCTTA-TTCGTTTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTAC-ATTTCATGT
*
7611119 CATGTTGCCATGGTATCTTTCAACCATGGTCTTA-TTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTACATTTCATGT
* * *
7611165 TACGTTGCCATGGTATCTTTCAACCATGGTCTTAC-ACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTACATTTCATGT
* *
7611211 CAGGTTGCCATGGTATCTTTCAACCAT-GTCTTAC-ACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTACATTTCATGT
*
7611256 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTAC-ACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTACATTTCAT
7611300 TTCAGAGAGC
Statistics
Matches: 208, Mismatches: 16, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
45 46 0.22
46 123 0.59
47 39 0.19
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.41
Consensus pattern (47 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTACATTTCATGT
Found at i:7611275 original size:91 final size:92
Alignment explanation
Indices: 7611031--7611304 Score: 345
Period size: 93 Copynumber: 3.0 Consensus size: 92
7611021 TTCGACATGA
* * * ** *
7611031 TGCCATAGTATCTTTCAACTATGGTTTTACTAGTTTTC-TGTCATGTTGCCATGGTATCTTTCAA
1 TGCCATGGTATCTTTCAACCATGGTCTTAC-ACATTTCATGTCACGTTGCCATGGTATCTTTCAA
** * *** *
7611095 CCATGGTCTTATTCGTTTTCCCGTCATGT
65 CCATGGTCTTACAC-ATTTCATATCAGGT
** *
7611124 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTTACGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCACGTTGCCATGGTATCTTTCAAC
7611189 CATGGTCTTACACATTTCATATCAGGT
66 CATGGTCTTACACATTTCATATCAGGT
* *
7611216 TGCCATGGTATCTTTCAACCAT-GTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCACGTTGCCATGGTATCTTTCAAC
*
7611280 CATGGTCTTACACATTTCATTTCAG
66 CATGGTCTTACACATTTCATATCAG
7611305 AGAGCACACT
Statistics
Matches: 158, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
91 61 0.39
92 35 0.22
93 62 0.39
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.41
Consensus pattern (92 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCACGTTGCCATGGTATCTTTCAAC
CATGGTCTTACACATTTCATATCAGGT
Found at i:7613287 original size:21 final size:20
Alignment explanation
Indices: 7613242--7613288 Score: 51
Period size: 21 Copynumber: 2.4 Consensus size: 20
7613232 CTCTAATTTT
* *
7613242 CCCTT-TTCTTCTTTCTTTT
1 CCCTTCTTCTTCTTTCCTTC
*
7613261 CTCTTCTTCTTTCTTTCCTTC
1 CCCTTCTTC-TTCTTTCCTTC
7613282 CCCTTCT
1 CCCTTCT
7613289 CTCTGTTTCG
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 4 0.18
20 3 0.14
21 15 0.68
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (20 bp):
CCCTTCTTCTTCTTTCCTTC
Found at i:7615429 original size:47 final size:47
Alignment explanation
Indices: 7615375--7615690 Score: 263
Period size: 46 Copynumber: 6.8 Consensus size: 47
7615365 GTAATGTGCT
* * * *
7615375 GATGCCATGTCCTAGATATGGTCTTACACTGGCTCAAATCTC-AAGTC
1 GATGCCATGTCCCAGACAT-GTCTTACACTGGCTCACATCTCGAAGCC
* * *
7615422 GATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCATCCCGTAGCC
1 GATGCCATGTCCCAGACAT-GTCTTACACTGGCTCA-CATCTCGAAGCC
* * *
7615470 GATG-CATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGCC
1 GATGCCATGTCCCAGACATGTCTTACACTGGCTCACATCTCGAAGCC
* * * *
7615516 AATG-CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTC-AATGCC
1 GATGCCATGTCCCAGACATGTCTTACACTGGCTCACATCTCGAA-GCC
** * **
7615562 GATGCCATGTCCCAGACATGTCTTACACTGGCTCTTATAAT-GTGGCC
1 GATGCCATGTCCCAGACATGTCTTACACTGGCTCACAT-CTCGAAGCC
* ** * **
7615609 GATG-CATGTCCCAAACATGTCTTACACTGGCTCTTATAAT-GTGGCC
1 GATGCCATGTCCCAGACATGTCTTACACTGGCTCACAT-CTCGAAGCC
* **
7615655 GATG-CATGTCACAGACATGTCTTACACCAGCTCACA
1 GATGCCATGTCCCAGACATGTCTTACACTGGCTCACA
7615691 CACAAATAAC
Statistics
Matches: 231, Mismatches: 31, Indels: 15
0.83 0.11 0.05
Matches are distributed among these distances:
45 1 0.00
46 135 0.58
47 87 0.38
48 8 0.03
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGTCTTACACTGGCTCACATCTCGAAGCC
Found at i:7615571 original size:93 final size:89
Alignment explanation
Indices: 7615375--7615681 Score: 266
Period size: 93 Copynumber: 3.3 Consensus size: 89
7615365 GTAATGTGCT
* * * * *
7615375 GATGCCATGTCCTAGATATGGTCTTACACTGGCTCAAATCTC-AAGTCGATGCCATGTCCCAGAC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCT--TATCTCGAGGCCGATG-CATGTCCCAGAC
* **
7615439 ATGGTCTTACACTGACTATCATC-CCGTAGCC
61 AT-GTCTTACACTG-CTCTC-TCTCAATAGCC
*
7615470 GATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGCCAATGCATGTCCCAGACATG
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTA--TCTCGAGGCCGATGCATGTCCCAGACATG
7615535 TCTTACACTAGCTCTCGTCTCAAT-GCC
64 TCTTACACT-GCTCTC-TCTCAATAGCC
* * *
7615562 GATGCCATGTCCCAGACATGTCTTACACTGGCTCTTATAAT-GTGGCCGATGCATGTCCCAAACA
1 GATG-CATGTCCCAGACATGTCTTACACTGG--CTTAT-CTCGAGGCCGATGCATGTCCCAGACA
* *
7615626 TGTCTTACACTGGCTCT-TAT-AATGTGGCC
62 TGTCTTACACT-GCTCTCTCTCAA--TAGCC
*
7615655 GATGCATGTCACAGACATGTCTTACAC
1 GATGCATGTCCCAGACATGTCTTACAC
7615682 CAGCTCACAC
Statistics
Matches: 183, Mismatches: 17, Indels: 27
0.81 0.07 0.12
Matches are distributed among these distances:
90 2 0.01
91 3 0.02
92 46 0.25
93 105 0.57
94 19 0.10
95 8 0.04
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (89 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTATCTCGAGGCCGATGCATGTCCCAGACATGTC
TTACACTGCTCTCTCTCAATAGCC
Done.