Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 210 of 356
Found at i:68609683 original size:22 final size:21
Alignment explanation
Indices: 68609633--68609695 Score: 72
Period size: 22 Copynumber: 2.9 Consensus size: 21
68609623 CAATTATTCT
*
68609633 TATTATGGCTTTGTGCCAACC
1 TATTATGGCTCTGTGCCAACC
*
68609654 TACATATGGCTCTGTGCCAACC
1 TA-TTATGGCTCTGTGCCAACC
* *
68609676 TGATTATGGTTGTGTGCCAA
1 T-ATTATGGCTCTGTGCCAA
68609696 ACGTATTTGC
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
21 2 0.06
22 32 0.91
23 1 0.03
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.35
Consensus pattern (21 bp):
TATTATGGCTCTGTGCCAACC
Found at i:68614149 original size:28 final size:28
Alignment explanation
Indices: 68614086--68614183 Score: 128
Period size: 27 Copynumber: 3.5 Consensus size: 28
68614076 ATATTAAGTC
*
68614086 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
68614113 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * *
68614141 CGCACACTTAGTGCTGA-ACAATTTAAACC
1 CGCACACTTAGTGCT-ATATAA-TCAAACT
68614170 CGCACACTTAGTGC
1 CGCACACTTAGTGC
68614184 CAATCTCATG
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
27 22 0.34
28 22 0.34
29 20 0.31
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:68618434 original size:27 final size:26
Alignment explanation
Indices: 68618404--68618588 Score: 106
Period size: 27 Copynumber: 6.8 Consensus size: 26
68618394 TATAGGGTAG
* *
68618404 AATTACTGCAATACCCTTGGTTTATAA
1 AATTACT-AAATACCCTTGGTTTACAA
* *
68618431 AATTAATAAATGCCCTTGGTTTACAA
1 AATTACTAAATACCCTTGGTTTACAA
* * *
68618457 AATTACCAAAATACCC-TCGATTAGCAA
1 AATTA-CTAAATACCCTTGGTTTA-CAA
* * *
68618484 AATTATCAAAATACCCCTGATTTACAA
1 AATTA-CTAAATACCCTTGGTTTACAA
* *
68618511 AATTACAAAAATACCCTTGACTTT-CAAA
1 AATTAC-TAAATACCCTTG-GTTTAC-AA
* * *
68618539 AATTA-TAGAAATACCATTAGTTTGCAA
1 AATTACT--AAATACCCTTGGTTTACAA
* *
68618566 AATTACCGAAATACCCTTAGTTT
1 AATTA-CTAAATACCCTTGGTTT
68618589 TTAAATTTAC
Statistics
Matches: 126, Mismatches: 21, Indels: 22
0.75 0.12 0.13
Matches are distributed among these distances:
26 27 0.21
27 75 0.60
28 24 0.19
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.31
Consensus pattern (26 bp):
AATTACTAAATACCCTTGGTTTACAA
Found at i:68618539 original size:54 final size:55
Alignment explanation
Indices: 68618450--68618553 Score: 142
Period size: 54 Copynumber: 1.9 Consensus size: 55
68618440 ATGCCCTTGG
*
68618450 TTTACAAAATTACCAAAATACCCTCGATTAGC-AAAATTATCA-AAATACCCCTGA
1 TTTACAAAATTACAAAAATACCCTCGATTAGCAAAAATTAT-AGAAATACCCCTGA
* *
68618504 TTTACAAAATTACAAAAATACCCTTGACTT-TCAAAAATTATAGAAATACC
1 TTTACAAAATTACAAAAATACCCTCGA-TTAGCAAAAATTATAGAAATACC
68618554 ATTAGTTTGC
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
54 27 0.61
55 17 0.39
ACGTcount: A:0.46, C:0.21, G:0.05, T:0.28
Consensus pattern (55 bp):
TTTACAAAATTACAAAAATACCCTCGATTAGCAAAAATTATAGAAATACCCCTGA
Found at i:68618567 original size:55 final size:53
Alignment explanation
Indices: 68618449--68618583 Score: 148
Period size: 55 Copynumber: 2.5 Consensus size: 53
68618439 AATGCCCTTG
* *
68618449 GTTTACAAAATTACCAAAATACCCTCGATTAGCAAAATTATCAAAATACCCCT
1 GTTTACAAAATTACCAAAATACCCTTGATTAGCAAAATTATCAAAATACCACT
* * *
68618502 GATTTACAAAATTACAAAAATACCCTTGACTT-TCAAAAATTAT-AGAAATACCATT
1 G-TTTACAAAATTACCAAAATACCCTTGA-TTAGC-AAAATTATCA-AAATACCACT
* *
68618557 AGTTTGCAAAATTACCGAAATACCCTT
1 -GTTTACAAAATTACCAAAATACCCTT
68618584 AGTTTTTAAA
Statistics
Matches: 69, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
53 1 0.01
54 27 0.39
55 40 0.58
56 1 0.01
ACGTcount: A:0.44, C:0.21, G:0.07, T:0.29
Consensus pattern (53 bp):
GTTTACAAAATTACCAAAATACCCTTGATTAGCAAAATTATCAAAATACCACT
Found at i:68618741 original size:20 final size:20
Alignment explanation
Indices: 68618718--68618760 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
68618708 CTATGTTTTA
68618718 ATTGAGAATG-TATGACTGTG
1 ATTG-GAATGTTATGACTGTG
* *
68618738 ATTGGACTGTTGTGACTGTG
1 ATTGGAATGTTATGACTGTG
68618758 ATT
1 ATT
68618761 TGTATGGTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.23, C:0.07, G:0.30, T:0.40
Consensus pattern (20 bp):
ATTGGAATGTTATGACTGTG
Found at i:68618894 original size:41 final size:41
Alignment explanation
Indices: 68618849--68618971 Score: 169
Period size: 41 Copynumber: 3.0 Consensus size: 41
68618839 GGGGGAAGAA
*
68618849 ATTGAGGATTGCATGGTTGTTTGACGA-CTGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGTTTGACGATC-GTGGATCCACCG
* *
68618890 ATTGAGGATCGCATGGTT-TCTTGATGATCGTGGATCTACCG
1 ATTGAGGATCGCATGGTTGT-TTGACGATCGTGGATCCACCG
* *
68618931 ATTAAGGATCGCATGGTTGCTTGACGATCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGTTTGACGATCGTGGATCCACCG
68618972 GTGGCTTTTA
Statistics
Matches: 72, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
40 1 0.01
41 70 0.97
42 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.31
Consensus pattern (41 bp):
ATTGAGGATCGCATGGTTGTTTGACGATCGTGGATCCACCG
Found at i:68619142 original size:22 final size:22
Alignment explanation
Indices: 68619112--68619170 Score: 84
Period size: 22 Copynumber: 2.7 Consensus size: 22
68619102 AATTATTCTG
*
68619112 ATTATGGCTTTGTGCCAACCTA
1 ATTATGGCTATGTGCCAACCTA
*
68619134 CA-TATGGCTCTGTGCCAACCTA
1 -ATTATGGCTATGTGCCAACCTA
68619156 ATTATGGCTATGTGC
1 ATTATGGCTATGTGC
68619171 TAAACATATT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
21 1 0.03
22 31 0.94
23 1 0.03
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.34
Consensus pattern (22 bp):
ATTATGGCTATGTGCCAACCTA
Found at i:68619618 original size:32 final size:32
Alignment explanation
Indices: 68619571--68619634 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
68619561 GCATATGGGT
* *
68619571 TTGATTCTGATATGGGCTAGGCCCAACTGATA
1 TTGATTCTAAGATGGGCTAGGCCCAACTGATA
*
68619603 TTGATTCTAAGATGGGCTAGGCCCAATTGATA
1 TTGATTCTAAGATGGGCTAGGCCCAACTGATA
68619635 CTGTGATGGG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (32 bp):
TTGATTCTAAGATGGGCTAGGCCCAACTGATA
Found at i:68623988 original size:35 final size:34
Alignment explanation
Indices: 68623938--68624027 Score: 99
Period size: 35 Copynumber: 2.6 Consensus size: 34
68623928 ACATACAAAG
*
68623938 TCTATCCCAATCTTTTTAAAATTTCCTTAGATTGA
1 TCTATCCCAA-CTTTTTAAAATTTCCATAGATTGA
** * *
68623973 TCTATCCCAACCTTTTTAAGGTTTGCATAGATTGG
1 TCTATCCCAA-CTTTTTAAAATTTCCATAGATTGA
* *
68624008 TCTATCCTAACTCTTTAAAA
1 TCTATCCCAACTTTTTAAAA
68624028 GTCAGTATAT
Statistics
Matches: 45, Mismatches: 10, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
34 7 0.16
35 38 0.84
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.42
Consensus pattern (34 bp):
TCTATCCCAACTTTTTAAAATTTCCATAGATTGA
Found at i:68637339 original size:40 final size:40
Alignment explanation
Indices: 68637280--68637498 Score: 334
Period size: 40 Copynumber: 5.5 Consensus size: 40
68637270 TGGATGATAA
* * * *
68637280 CCGGGCTAAGTCTCGAAGGCATTTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGTT
** *
68637320 CCTAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCA-TAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGT-T
68637360 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGTT
68637400 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGTT
68637440 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGT-T
*
68637480 CCGGGCTATGTCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
68637499 TATTCGAGCG
Statistics
Matches: 165, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
39 2 0.01
40 162 0.98
41 1 0.01
ACGTcount: A:0.21, C:0.24, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGTT
Found at i:68637510 original size:40 final size:40
Alignment explanation
Indices: 68637280--68637537 Score: 328
Period size: 40 Copynumber: 6.5 Consensus size: 40
68637270 TGGATGATAA
* * * *
68637280 CCGGGCTAAGTCTCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
** *
68637320 CCTAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
68637360 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
68637400 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
68637440 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
68637480 CCGGGCTATGTCCCGAAGGTATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
68637520 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
68637538 TACTTGGCTT
Statistics
Matches: 197, Mismatches: 17, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
39 17 0.09
40 179 0.91
41 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:68660206 original size:26 final size:27
Alignment explanation
Indices: 68660150--68660205 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
68660140 ACAAACCATG
* *
68660150 AAAGAAAAACTTTTATGGTGAAATATA
1 AAAGAAAAACCTTTATGGCGAAATATA
* * *
68660177 AAAGAAAAGCCTTTGTGGCGAATTATA
1 AAAGAAAAACCTTTATGGCGAAATATA
68660204 AA
1 AA
68660206 GGGATAGCCT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.48, C:0.07, G:0.18, T:0.27
Consensus pattern (27 bp):
AAAGAAAAACCTTTATGGCGAAATATA
Found at i:68663390 original size:27 final size:27
Alignment explanation
Indices: 68663359--68663438 Score: 142
Period size: 27 Copynumber: 3.0 Consensus size: 27
68663349 AATAAATTTT
*
68663359 TCCTACACTAGACACATTAAAATTATG
1 TCCTAAACTAGACACATTAAAATTATG
68663386 TCCTAAACTAGACACATTAAAATTATG
1 TCCTAAACTAGACACATTAAAATTATG
*
68663413 TTCTAAACTAGACACATTAAAATTAT
1 TCCTAAACTAGACACATTAAAATTAT
68663439 ATTAATATAA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.44, C:0.19, G:0.06, T:0.31
Consensus pattern (27 bp):
TCCTAAACTAGACACATTAAAATTATG
Found at i:68671630 original size:22 final size:22
Alignment explanation
Indices: 68671581--68671630 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
68671571 ACTTTTCTTT
* * *
68671581 TCTTTTTTTAATTTTTCGTAAT
1 TCTTTTTTTAATATTTCCTAAA
68671603 TCTTTTTTTAACTATTTCCTAAA
1 TCTTTTTTTAA-TATTTCCTAAA
68671626 T-TTTT
1 TCTTTT
68671631 ACACTTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 15 0.62
23 9 0.38
ACGTcount: A:0.20, C:0.12, G:0.02, T:0.66
Consensus pattern (22 bp):
TCTTTTTTTAATATTTCCTAAA
Found at i:68672808 original size:20 final size:19
Alignment explanation
Indices: 68672771--68672821 Score: 57
Period size: 20 Copynumber: 2.6 Consensus size: 19
68672761 TAAATGATAG
***
68672771 CAAATTAATTAAATTAAGA
1 CAAATTAATTAGGCTAAGA
*
68672790 CACCATTAATTAGGCTAAGA
1 CA-AATTAATTAGGCTAAGA
68672810 CAAATTAATTAG
1 CAAATTAATTAG
68672822 CACTAGCTAA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
19 11 0.42
20 15 0.58
ACGTcount: A:0.49, C:0.12, G:0.10, T:0.29
Consensus pattern (19 bp):
CAAATTAATTAGGCTAAGA
Found at i:68672869 original size:27 final size:27
Alignment explanation
Indices: 68672833--68672919 Score: 149
Period size: 27 Copynumber: 3.3 Consensus size: 27
68672823 ACTAGCTAAT
*
68672833 AAATT-TGTCCTACACTAGACACATTA
1 AAATTATGTCCTAAACTAGACACATTA
68672859 AAATTATGTCCTAAACTAGACACATTA
1 AAATTATGTCCTAAACTAGACACATTA
*
68672886 AAATTATGTTCTAAACTAGACACATTA
1 AAATTATGTCCTAAACTAGACACATTA
68672913 AAATTAT
1 AAATTAT
68672920 ATTAATATAA
Statistics
Matches: 58, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
26 5 0.09
27 53 0.91
ACGTcount: A:0.44, C:0.17, G:0.07, T:0.32
Consensus pattern (27 bp):
AAATTATGTCCTAAACTAGACACATTA
Found at i:68673884 original size:38 final size:37
Alignment explanation
Indices: 68673842--68673939 Score: 99
Period size: 38 Copynumber: 2.6 Consensus size: 37
68673832 AAAATCCTTG
*
68673842 TTATAATTATTGTAATTATAATCTAAGATCAAATATTA
1 TTATAATTATTGTAATTATAATCTAAG-TCAAACATTA
* * * **
68673880 TTATAATTACTGTAA-TAGTATTTTTTTGTCAAACATTA
1 TTATAATTATTGTAATTA-TA-ATCTAAGTCAAACATTA
*
68673918 TTATAATTATGGTAATTATAAT
1 TTATAATTATTGTAATTATAAT
68673940 TATTATGATT
Statistics
Matches: 48, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
37 3 0.06
38 40 0.83
39 5 0.10
ACGTcount: A:0.40, C:0.05, G:0.07, T:0.48
Consensus pattern (37 bp):
TTATAATTATTGTAATTATAATCTAAGTCAAACATTA
Found at i:68677230 original size:43 final size:43
Alignment explanation
Indices: 68677176--68677338 Score: 154
Period size: 43 Copynumber: 3.8 Consensus size: 43
68677166 ACTGAGATGT
* *
68677176 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTGC
1 GATTATATGTAAGACCATGTCTGGGACATTGGCATCGTATTGC
* * * * *
68677219 GATTATGTGTAATACCATGTTTGGGACATTGGCGTCGTTAAT-C
1 GATTATATGTAAGACCATGTCTGGGACATTGGCATCG-TATTGC
* *
68677262 GATT-TCATGTAAGACCCTGTCTGGGACAGTGGCATCG-ATATGC
1 GATTAT-ATGTAAGACCATGTCTGGGACATTGGCATCGTAT-TGC
* * * *
68677305 GATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 GATTATATGTAAGACCATGTCTGGGACATTGGCAT
68677339 TGTACGAGCT
Statistics
Matches: 96, Mismatches: 19, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
41 1 0.01
42 8 0.08
43 84 0.88
44 3 0.03
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (43 bp):
GATTATATGTAAGACCATGTCTGGGACATTGGCATCGTATTGC
Found at i:68682282 original size:40 final size:40
Alignment explanation
Indices: 68682059--68682268 Score: 296
Period size: 40 Copynumber: 5.3 Consensus size: 40
68682049 TCCTCGTTCA
* * * * *
68682059 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
68682098 AATGCCTTCGGGACGTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
68682138 AATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
68682178 AATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
68682218 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
68682258 AAGGCCTTCGG
1 AATGCCTTCGG
68682269 ATCTTAGTCC
Statistics
Matches: 156, Mismatches: 14, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 33 0.21
40 123 0.79
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:68682305 original size:80 final size:80
Alignment explanation
Indices: 68682062--68682321 Score: 247
Period size: 80 Copynumber: 3.3 Consensus size: 80
68682052 TCGTTCAAAT
* * * * * * * *
68682062 GCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACGTAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
* * *
68682126 ACAACTCGCACGAAT
66 ATAACTAGCACGAAA
* * * * *
68682141 GCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGCTTTA
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
* *
68682206 ATAACTCGCACGAAT
66 ATAACTAGCACGAAA
* * **
68682221 GCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAGTCCGGATAT
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGA-CTTAACCCGGATAT
* **
68682285 ATTCGCTTAGCAC-AAA
65 AATAAC-TAGCACGAAA
*
68682301 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
68682322 CAGCATTCAA
Statistics
Matches: 155, Mismatches: 23, Indels: 5
0.85 0.13 0.03
Matches are distributed among these distances:
79 34 0.22
80 116 0.75
81 5 0.03
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.25
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
ATAACTAGCACGAAA
Found at i:68682305 original size:120 final size:118
Alignment explanation
Indices: 68682057--68682320 Score: 296
Period size: 120 Copynumber: 2.2 Consensus size: 118
68682047 GCTCCTCGTT
* * *
68682057 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACGTAACCCGGA
1 CAAA-GCCTTCGGGACTTAGCCCGGCTTTAATAACTCACACAATGCCTTCGGGACGTAACCCGGA
* * * * *
68682122 TTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCA
65 TTTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATAATAACTAGCA
* * * *
68682176 CGAATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 C-AAAGCCTTCGGGACTTAGCCCGGCTTTAATAACTCACAC-AATGCCTTCGGGACGTAACCCGG
** * ** * **
68682241 ATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAGTCCGGATATATTCGCTTAGCA
64 ATTTAACAACTCGCACAAAGGCCTTCGGGA-CTTAACCCGGATATAATAAC-TAGCA
68682297 CAAAGCCTTCGGGACTTAGCCCGG
1 CAAAGCCTTCGGGACTTAGCCCGG
68682321 ACAGCATTCA
Statistics
Matches: 119, Mismatches: 22, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
119 35 0.29
120 79 0.66
121 5 0.04
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.25
Consensus pattern (118 bp):
CAAAGCCTTCGGGACTTAGCCCGGCTTTAATAACTCACACAATGCCTTCGGGACGTAACCCGGAT
TTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATAATAACTAGCA
Found at i:68687468 original size:43 final size:43
Alignment explanation
Indices: 68687369--68687470 Score: 100
Period size: 43 Copynumber: 2.4 Consensus size: 43
68687359 ACATAGATTT
* * * *
68687369 GATTACATGTAAGACCATGTCTAGGACATTGGCGTTGTATTGT
1 GATTTCATGTAAGACCATGTCTAGGACATTGGCGTCGTAATGC
* * * *
68687412 GA-TTAAGTATAAGACCATGTCTGGGGCATTGGCGTCGTTAAT-C
1 GATTTCA-TGTAAGACCATGTCTAGGACATTGGCGTCG-TAATGC
68687455 GATTTCATGTAAGACC
1 GATTTCATGTAAGACC
68687471 CTATCTAGAA
Statistics
Matches: 46, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
42 2 0.04
43 38 0.83
44 6 0.13
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.32
Consensus pattern (43 bp):
GATTTCATGTAAGACCATGTCTAGGACATTGGCGTCGTAATGC
Found at i:68689420 original size:50 final size:50
Alignment explanation
Indices: 68689345--68689789 Score: 425
Period size: 50 Copynumber: 8.9 Consensus size: 50
68689335 ACCGAAGCTC
* * *
68689345 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * * * *
68689395 TCTGGTACACGTAGTAGCCTACACTTAGTACTACACACATGACTTAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* ** **
68689445 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTGA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCTA-TCAA
** * * * ** *
68689497 -C-GAGTATGCATAGTAGCCTGGACTTAGTACTACACACATGATCGAAGTTAA
1 TCTG-GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCTA-TCAA
* * * *
68689548 T-GGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * * *
68689597 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACTTAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * ** *
68689647 TCTGATACACGTAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCTA-TCAA
* * * *
68689699 -CGGGTAGCA--TAGTAGCCTGGACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTA-CACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
*
68689747 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACAGGTGAC
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGAC
68689790 TTACAATGAA
Statistics
Matches: 326, Mismatches: 57, Indels: 24
0.80 0.14 0.06
Matches are distributed among these distances:
48 5 0.02
49 11 0.03
50 221 0.68
51 84 0.26
52 5 0.02
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (50 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
Found at i:68689694 original size:202 final size:200
Alignment explanation
Indices: 68689348--68689789 Score: 710
Period size: 202 Copynumber: 2.2 Consensus size: 200
68689338 GAAGCTCTCT
68689348 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGC
*
68689413 CTACACTTAGTACTACACACATGACTTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTA
66 CTACACTTAGTACTACACACATGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTA
*
68689478 CACACGTGATCGAAGTTGACGAGTATGCATAGTAGCCTGGACTTAGTACTACACACATGATCGAA
131 CACACGTGATCGAAGTTAACGAGTA-GCATAGTAGCCTGGACTTAGTACT--ACACATG--CGAA
*
68689543 GT-T-AAT-G
191 CTATCAATCG
68689550 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGC
* **
68689615 CTGCACTTAGTACTACACATGTGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTA
66 CTACACTTAGTACTACACACATGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTA
* *
68689680 CACACGTGATCGAAGTTAACGGGTAGCATAGTAGCCTGGACTTAGTACTACACATGCGACCTATC
131 CACACGTGATCGAAGTTAACGAGTAGCATAGTAGCCTGGACTTAGTACTACACATGCGAACTATC
*
68689745 AATCT
196 AATCG
* * *
68689750 GGTACACGTAGTAGCCTGCACTTAGTACTACACAGGTGAC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGAC
68689790 TTACAATGAA
Statistics
Matches: 225, Mismatches: 12, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
197 4 0.02
198 1 0.00
199 10 0.04
200 37 0.16
201 24 0.11
202 149 0.66
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (200 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGC
CTACACTTAGTACTACACACATGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTA
CACACGTGATCGAAGTTAACGAGTAGCATAGTAGCCTGGACTTAGTACTACACATGCGAACTATC
AATCG
Found at i:68691695 original size:30 final size:32
Alignment explanation
Indices: 68691641--68691702 Score: 92
Period size: 30 Copynumber: 2.0 Consensus size: 32
68691631 AATCCAAAGT
*
68691641 TTAGGTCTTAGGTAAAAATAACCATTTTGCCC
1 TTAGATCTTAGGTAAAAATAACCATTTTGCCC
*
68691673 TTAGATCTT-GGT-AAAATGACCATTTTGCCC
1 TTAGATCTTAGGTAAAAATAACCATTTTGCCC
68691703 CTATGCTTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 17 0.61
31 3 0.11
32 8 0.29
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.35
Consensus pattern (32 bp):
TTAGATCTTAGGTAAAAATAACCATTTTGCCC
Found at i:68701925 original size:46 final size:46
Alignment explanation
Indices: 68701860--68701956 Score: 142
Period size: 46 Copynumber: 2.1 Consensus size: 46
68701850 CTTACATTGA
*
68701860 CACATCTCGTAGCCGATGCATGTCCAAGACACGTCTTACACTAGCT
1 CACATCTCGTAGCCAATGCATGTCCAAGACACGTCTTACACTAGCT
* * *
68701906 TACATCTCG-AGGCCAATGCATGTCCCAGACATGTCTTACACTAGCT
1 CACATCTCGTA-GCCAATGCATGTCCAAGACACGTCTTACACTAGCT
68701952 CACAT
1 CACAT
68701957 TGTAACACCC
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
45 1 0.02
46 44 0.98
ACGTcount: A:0.27, C:0.32, G:0.16, T:0.25
Consensus pattern (46 bp):
CACATCTCGTAGCCAATGCATGTCCAAGACACGTCTTACACTAGCT
Found at i:68704232 original size:40 final size:40
Alignment explanation
Indices: 68703961--68704225 Score: 335
Period size: 40 Copynumber: 6.7 Consensus size: 40
68703951 TTGAATGATG
* * * *
68703961 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
68704001 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
68704041 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
68704081 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
68704121 TCCGGGCTAAG-CCCGAAGGCATTTGTGAGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
68704160 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
68704201 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
68704226 AACGAGTAGC
Statistics
Matches: 205, Mismatches: 15, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
39 34 0.17
40 161 0.79
41 10 0.05
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:68704256 original size:79 final size:78
Alignment explanation
Indices: 68704013--68704258 Score: 259
Period size: 79 Copynumber: 3.1 Consensus size: 78
68704003 CGGACTAAGA
* **
68704013 TCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTAC
1 TCCGAAGGCATTTGTGCGAGTTACTAAA-CCGGGCTAAG-TCCCGAAGGCATTTGAACGAGTTAC
*
68704077 TAAATCCGGACTAAGA-
64 TAAATCCGG-TTAA-AT
* * *
68704093 TCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CCCGAAGGCATTTGTGA-GAGTTAC
1 TCCGAAGGCATTTGTGCGAGTTACTAA-ACCGGGCTAAGTCCCGAAGGCATTTG-AACGAGTTAC
*
68704156 TAAATCCGGGTTAAGT
64 TAAATCC-GGTTAAAT
* *
68704172 CCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 TCCGAAGGCATTTGTGCGAGTTACTA-AACCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTA-C
* **
68704236 TATATCTTGTTAAAT
64 TAAATCCGGTTAAAT
68704251 TCCGAAGG
1 TCCGAAGG
68704259 TACGTGATTT
Statistics
Matches: 140, Mismatches: 17, Indels: 19
0.80 0.10 0.11
Matches are distributed among these distances:
79 79 0.56
80 61 0.44
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (78 bp):
TCCGAAGGCATTTGTGCGAGTTACTAAACCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTACTA
AATCCGGTTAAAT
Found at i:68704258 original size:119 final size:119
Alignment explanation
Indices: 68704001--68704231 Score: 324
Period size: 119 Copynumber: 1.9 Consensus size: 119
68703991 AGTGACCATA
* *
68704001 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGAGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTT
**
68704066 GTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
65 GTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGATACTAAT
* **
68704121 TCCGGGCTAAGCCCGAAGGCATTTGTGAGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTT
1 TCCGGGCTAAGTCCGAAGGCATTTGTGAGAGTTACTAAATCCGGACTAAGAT-CCGAAGGCATTT
* *
68704185 GTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAG
65 GTGCGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAG
68704232 TAGCTATATC
Statistics
Matches: 99, Mismatches: 9, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
118 2 0.02
119 85 0.86
120 12 0.12
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.25
Consensus pattern (119 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGAGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTG
TGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGATACTAAT
Found at i:68712275 original size:40 final size:40
Alignment explanation
Indices: 68712004--68712268 Score: 335
Period size: 40 Copynumber: 6.7 Consensus size: 40
68711994 TTGAATGATG
* * * *
68712004 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
68712044 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
68712084 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
68712124 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
68712164 TCCGGGCTAAG-CCCGAAGGCATTTGTGAGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
68712203 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
68712244 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
68712269 AACGAGTAGC
Statistics
Matches: 205, Mismatches: 15, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
39 34 0.17
40 161 0.79
41 10 0.05
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:68712291 original size:79 final size:77
Alignment explanation
Indices: 68712005--68712301 Score: 271
Period size: 80 Copynumber: 3.7 Consensus size: 77
68711995 TGAATGATGT
** * * * * *
68712005 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGAAC-GAGTTACTAAATCCGG-TTAAG-TCCGAAGGCATTT
68712069 GTGCGAGTTACTAAA
63 GTGCGAGTTACTAAA
* ** *
68712084 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATT
1 -CCGGGCTAAG-TCCCGAAGGCATTTGAACGAGTTACTAAATCCGG-TTAAG-TCCGAAGGCATT
* *
68712148 TGTGCGAGATACTAATT
62 TGTGCGAGTTACTAA-A
*
68712165 CCGGGCTAAG-CCCGAAGGCATTTGTGA-GAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTG-AACGAGTTACTAAATCC-GGTTAAGT-CCGAAGGCATTT
68712228 GTGCGAGTTACTATAA
63 GTGCGAGTTACTA-AA
* * * *
68712244 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCCAGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTA-CTAAATCCGGTT-AAGTCCGAAGG
68712302 TATGTGATTT
Statistics
Matches: 187, Mismatches: 18, Indels: 25
0.81 0.08 0.11
Matches are distributed among these distances:
78 1 0.01
79 77 0.41
80 101 0.54
81 8 0.04
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (77 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTACTAAATCCGGTTAAGTCCGAAGGCATTTGTG
CGAGTTACTAAA
Found at i:68712301 original size:119 final size:119
Alignment explanation
Indices: 68712050--68712274 Score: 312
Period size: 119 Copynumber: 1.9 Consensus size: 119
68712040 CATATCCGGA
*
68712050 CTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGA
1 CTAAG-TCCGAAGGCATTTGTGAGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGA
** *
68712115 GTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAATTCCGGG
65 GTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGATACTAATTCCGAG
* **
68712170 CTAAGCCCGAAGGCATTTGTGAGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCGA
1 CTAAGTCCGAAGGCATTTGTGAGAGTTACTAAATCCGGACTAAGAT-CCGAAGGCATTTGTGCGA
* *
68712234 GTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAG
65 GTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAG
68712275 TAGCTATATC
Statistics
Matches: 94, Mismatches: 8, Indels: 7
0.86 0.07 0.06
Matches are distributed among these distances:
118 2 0.02
119 85 0.90
120 7 0.07
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (119 bp):
CTAAGTCCGAAGGCATTTGTGAGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
TTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGATACTAATTCCGAG
Found at i:68714655 original size:39 final size:40
Alignment explanation
Indices: 68714597--68714720 Score: 99
Period size: 40 Copynumber: 3.1 Consensus size: 40
68714587 AATCAAGCAT
* * * *
68714597 CTTCGGGG-TTTAGCCGGATATAACCACTCGCA-CAAGGC
1 CTTCGGGGCTTAACCCGGATATAACCACTAGCATAAAGGC
* *** *
68714635 CTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGGCTTAACCCGGATATAACCACTAGCATAAAGGC
* ** * * *
68714675 CTTCGGGGCTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGGCTTAACCCGGATATAACCACTAGCATAAAGGC
68714715 CTTCGG
1 CTTCGG
68714721 ATCTTAGTCC
Statistics
Matches: 70, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
38 7 0.10
39 18 0.26
40 45 0.64
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.24
Consensus pattern (40 bp):
CTTCGGGGCTTAACCCGGATATAACCACTAGCATAAAGGC
Found at i:68714680 original size:40 final size:40
Alignment explanation
Indices: 68714633--68714777 Score: 182
Period size: 40 Copynumber: 3.6 Consensus size: 40
68714623 CTCGCACAAG
* * * *
68714633 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGCTAGCACAAAT
*
68714673 GCCTTCGGGGCTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGCTAGCACAAAT
* * * *
68714713 GCCTTCGGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGC-TAGCACAAAT
* *
68714754 GCCTTTGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
68714778 CATTCGAGTA
Statistics
Matches: 89, Mismatches: 15, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
40 61 0.69
41 28 0.31
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:68715304 original size:46 final size:46
Alignment explanation
Indices: 68715237--68715328 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
68715227 TAAAGCCTTC
68715237 AATATGCTTACCTATGGCCGAACAACACATCAACCTATGTACTCAT
1 AATATGCTTACCTATGGCCGAACAACACATCAACCTATGTACTCAT
68715283 AATATGCTTACCTATGGCCGAACAACACATCAACCTATGTACTCAT
1 AATATGCTTACCTATGGCCGAACAACACATCAACCTATGTACTCAT
68715329 TCATGTGGCC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.35, C:0.28, G:0.11, T:0.26
Consensus pattern (46 bp):
AATATGCTTACCTATGGCCGAACAACACATCAACCTATGTACTCAT
Found at i:68729847 original size:50 final size:49
Alignment explanation
Indices: 68729647--68729974 Score: 367
Period size: 50 Copynumber: 6.7 Consensus size: 49
68729637 ATAAGGTCCT
*
68729647 ATGTAAGACCATG-CTGGGACATGGCATTGGCATCG-ATATGAGACCCC
1 ATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAATATGAGATCCC
* * * * * * * *
68729694 GTATAAGACCATATCTGGGATATGGCATCGGCATCG-AGATGAGGTCTC
1 ATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAATATGAGATCCC
* * * * * * * *
68729742 GTATAATACCATGTTTGGGACATGACATCGGCA-CCAATACGAGATCCC
1 ATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAATATGAGATCCC
* **
68729790 ATGTAAGACCATGTTTGAAACATGGCATTGGCATCGATATATGAGATCCC
1 ATGTAAGACCATGTCTGGGACATGGCATTGGCATCGA-ATATGAGATCCC
*
68729840 GTGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATATGAGATCCC
1 ATGTAAGACCATGTCTGGGACATGGCATTGGCATCGA-ATATGAGATCCC
* * *
68729890 ATGTAAGACCATGTCTGGGACATGACATTGGCATCGATATGTGTGATCCC
1 ATGTAAGACCATGTCTGGGACATGGCATTGGCATCGA-ATATGAGATCCC
* *
68729940 ATGTAAGACCATATCTGGGATATGGCATTGGCATC
1 ATGTAAGACCATGTCTGGGACATGGCATTGGCATC
68729975 TTACTATGTG
Statistics
Matches: 238, Mismatches: 39, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
47 11 0.05
48 90 0.38
49 2 0.01
50 135 0.57
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (49 bp):
ATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAATATGAGATCCC
Found at i:68735594 original size:101 final size:99
Alignment explanation
Indices: 68735376--68735576 Score: 276
Period size: 101 Copynumber: 2.0 Consensus size: 99
68735366 TATGTAGCCA
* * * * *
68735376 AACTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 AACTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACA
* *
68735441 TAGTAGCTTGCACTTAGTACTACACACGTGACCT
66 TAGTAGCCTGCACTTAGTACTACACACGCGACCT
* * * *
68735475 AACTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACG
1 AACTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCGGTACA
*
68735540 CATAGTAGCCTGCACTTAGTACTACACATGCGACCT
64 CATAGTAGCCTGCACTTAGTACTACACACGCGACCT
68735576 A
1 A
68735577 GCTACATATA
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
99 42 0.48
100 3 0.03
101 43 0.49
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (99 bp):
AACTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACA
TAGTAGCCTGCACTTAGTACTACACACGCGACCT
Found at i:68736417 original size:30 final size:30
Alignment explanation
Indices: 68736381--68736441 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
68736371 TCCTTAACTC
68736381 AAACTTTGGAA-ATTTTACAATTTTGCCCCT
1 AAACTTTGGAATA-TTTACAATTTTGCCCCT
* * *
68736411 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAATATTTACAATTTTGCCCCT
68736441 A
1 A
68736442 GGCTCGAGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.41
Consensus pattern (30 bp):
AAACTTTGGAATATTTACAATTTTGCCCCT
Found at i:68741495 original size:17 final size:18
Alignment explanation
Indices: 68741463--68741511 Score: 66
Period size: 17 Copynumber: 2.8 Consensus size: 18
68741453 TTAAAAAGTT
*
68741463 ATTTTTAATATTTTTATA
1 ATTTTTAATATATTTATA
*
68741481 CTTTTTAATA-ATTTATA
1 ATTTTTAATATATTTATA
68741498 ATTTTT-ATATATTT
1 ATTTTTAATATATTT
68741512 TAAAATTTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
16 3 0.11
17 15 0.56
18 9 0.33
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (18 bp):
ATTTTTAATATATTTATA
Found at i:68741513 original size:18 final size:17
Alignment explanation
Indices: 68741463--68741520 Score: 71
Period size: 18 Copynumber: 3.3 Consensus size: 17
68741453 TTAAAAAGTT
68741463 ATTTTTAATATTTTTATA
1 ATTTTTAATA-TTTTATA
* *
68741481 CTTTTTAATAATTTATA
1 ATTTTTAATATTTTATA
*
68741498 ATTTTTATATATTTTAAA
1 ATTTTTA-ATATTTTATA
68741516 ATTTT
1 ATTTT
68741521 AAAAAAATAA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
17 12 0.35
18 22 0.65
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (17 bp):
ATTTTTAATATTTTATA
Found at i:68745120 original size:18 final size:18
Alignment explanation
Indices: 68745097--68745143 Score: 94
Period size: 18 Copynumber: 2.6 Consensus size: 18
68745087 CACTTTTCAA
68745097 TGTGAACACTCCTCTAAG
1 TGTGAACACTCCTCTAAG
68745115 TGTGAACACTCCTCTAAG
1 TGTGAACACTCCTCTAAG
68745133 TGTGAACACTC
1 TGTGAACACTC
68745144 TCTTTTGAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.28
Consensus pattern (18 bp):
TGTGAACACTCCTCTAAG
Found at i:68749738 original size:32 final size:32
Alignment explanation
Indices: 68749648--68749731 Score: 150
Period size: 32 Copynumber: 2.6 Consensus size: 32
68749638 AAACCTATTA
* *
68749648 AACTTACTCCAAAAATCATACCACAAACACTT
1 AACTTACTCCTAAAATCATGCCACAAACACTT
68749680 AACTTACTCCTAAAATCATGCCACAAACACTT
1 AACTTACTCCTAAAATCATGCCACAAACACTT
68749712 AACTTACTCCTAAAATCATG
1 AACTTACTCCTAAAATCATG
68749732 TAACAAAAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
32 50 1.00
ACGTcount: A:0.43, C:0.30, G:0.02, T:0.25
Consensus pattern (32 bp):
AACTTACTCCTAAAATCATGCCACAAACACTT
Found at i:68757404 original size:79 final size:81
Alignment explanation
Indices: 68757295--68757477 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
68757285 TACTCGTTCA
* *
68757295 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
68757358 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
68757375 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
68757438 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
68757454 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
68757478 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:68757477 original size:40 final size:40
Alignment explanation
Indices: 68757274--68757477 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
68757264 CGGAATTTAA
** *
68757274 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
68757314 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
68757354 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
68757393 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
68757433 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
68757473 CCGGA
1 CCGGA
68757478 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:68765432 original size:79 final size:81
Alignment explanation
Indices: 68765323--68765505 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
68765313 TACTCGTTCA
* *
68765323 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
68765386 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
68765403 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
68765466 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
68765482 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
68765506 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:68765505 original size:40 final size:40
Alignment explanation
Indices: 68765302--68765505 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
68765292 CGGAATTTAA
** *
68765302 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
68765342 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
68765382 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
68765421 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
68765461 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
68765501 CCGGA
1 CCGGA
68765506 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:68779025 original size:37 final size:37
Alignment explanation
Indices: 68778975--68779053 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
68778965 TTATTACGAA
* * *
68778975 GTCTTACCCGGACATAATCTTCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCTCACACGAAGTCATCGG
*
68779012 GTCTTACCCGGACAAAATCCTCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCTCACACGAAGTCATCGG
68779049 GTCTT
1 GTCTT
68779054 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCTCACACGAAGTCATCGG
Found at i:68779295 original size:47 final size:47
Alignment explanation
Indices: 68779172--68779557 Score: 540
Period size: 47 Copynumber: 8.1 Consensus size: 47
68779162 CCCTTCGGGA
* * * * * * *
68779172 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCC
1 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGG-C
*
68779220 CTGTCA-CATATATATACACTTCCACATTCATCACATCGGCCATTAGGC
1 CT-T-ATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68779268 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68779315 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTAT--CATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68779364 CTTATCATATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68779411 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTAT--CATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* ** * *
68779460 CCTATCACGTATATACACTTTCACATTCATCACATCGGTCATTCGGC
1 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* ** *
68779507 CCTATCACGTATATACACTTTCTCATTCATCACATCGGCCATTAGGC
1 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68779554 CTTA
1 CTTA
68779558 CTATCATTTC
Statistics
Matches: 311, Mismatches: 20, Indels: 15
0.90 0.06 0.04
Matches are distributed among these distances:
46 1 0.00
47 178 0.57
48 5 0.02
49 126 0.41
50 1 0.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:68779336 original size:96 final size:96
Alignment explanation
Indices: 68779172--68779557 Score: 587
Period size: 96 Copynumber: 4.0 Consensus size: 96
68779162 CCCTTCGGGA
* * * * * * *
68779172 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
*
68779237 ACTTCCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
68779268 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
68779333 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* * *
68779364 CTTATCATATATATACACTTTCACATTCATCACATCGACCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
68779429 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* * * * *
68779460 CCTATCACGTATATACACTTTCACATTCATCACATCGGTCATTCGGCCCTATCAC--GTATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
*
68779523 ACTTTCTCATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
68779554 CTTA
1 CTTA
68779558 CTATCATTTC
Statistics
Matches: 269, Mismatches: 21, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
94 40 0.15
96 229 0.85
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:68788872 original size:28 final size:29
Alignment explanation
Indices: 68788807--68788872 Score: 98
Period size: 28 Copynumber: 2.3 Consensus size: 29
68788797 AAAGTATGAC
68788807 TATGAATGTGATTTGGGCCTAATGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
* *
68788836 TACGAATGTGA-TTGGGCCTAGTGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
*
68788864 TATGCATGT
1 TATGAATGT
68788873 TTGTTGACTT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
28 23 0.70
29 10 0.30
ACGTcount: A:0.23, C:0.15, G:0.32, T:0.30
Consensus pattern (29 bp):
TATGAATGTGATTTGGGCCTAATGGGCCA
Found at i:68796652 original size:30 final size:30
Alignment explanation
Indices: 68796618--68796680 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
68796608 AACATGACTG
*
68796618 TGTGTCACACACGGTTAAGACACTCGCCCA
1 TGTGTCACACACGGTTAAGACACACGCCCA
68796648 TGTGTCACACACGGTTAAGACACACGCCCA
1 TGTGTCACACACGGTTAAGACACACGCCCA
68796678 TGT
1 TGT
68796681 CCCTGTCCGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.27, C:0.32, G:0.21, T:0.21
Consensus pattern (30 bp):
TGTGTCACACACGGTTAAGACACACGCCCA
Found at i:68797613 original size:24 final size:25
Alignment explanation
Indices: 68797558--68797622 Score: 87
Period size: 24 Copynumber: 2.6 Consensus size: 25
68797548 GAGTCATGGT
*
68797558 CGGTAAGCTCTTACTGAGCTGATAAA
1 CGGTAAGCTC-TATTGAGCTGATAAA
*
68797584 CAGTAAGCTCTATTGAGCTGA-AAA
1 CGGTAAGCTCTATTGAGCTGATAAA
*
68797608 CGGTAAGCTTTATTG
1 CGGTAAGCTCTATTG
68797623 TAGTGAACAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
24 16 0.46
25 10 0.29
26 9 0.26
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (25 bp):
CGGTAAGCTCTATTGAGCTGATAAA
Found at i:68799417 original size:27 final size:27
Alignment explanation
Indices: 68799369--68799420 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
68799359 GCGAGGCTGC
*
68799369 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGATA
* * *
68799396 CAGATATTGTGGCTAGGCCACCAGA
1 CAGATATTGTGACGAAGCCACCAGA
68799421 ACAAATACAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.21
Consensus pattern (27 bp):
CAGATATTGTGACGAAGCCACCAGATA
Found at i:68806429 original size:93 final size:93
Alignment explanation
Indices: 68806316--68806487 Score: 326
Period size: 93 Copynumber: 1.8 Consensus size: 93
68806306 CGCCCATAAG
*
68806316 CGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
68806381 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
68806409 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
68806474 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
68806488 TCAACCATCC
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
93 77 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:68806484 original size:46 final size:46
Alignment explanation
Indices: 68806309--68806484 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
68806299 TGTAACCCGC
* *
68806309 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
68806355 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
68806405 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
68806448 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
68806485 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.56
47 29 0.26
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:68812215 original size:31 final size:31
Alignment explanation
Indices: 68812174--68812237 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
68812164 CCTTTTCATA
*
68812174 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
** *
68812205 TTTCAAATTTCATATTACTGGGTCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
68812236 TT
1 TT
68812238 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:68812511 original size:23 final size:23
Alignment explanation
Indices: 68812431--68812524 Score: 109
Period size: 23 Copynumber: 4.0 Consensus size: 23
68812421 GCTTTATCAT
*
68812431 ATAACTGGAGGCCT-AGCCTCTTTA
1 ATAACTGG-GGCATAAGCC-CTTTA
* *
68812455 AGTAACTGGGGCAAAAGCCCTTTTT
1 A-TAACTGGGGCATAAGCCC-TTTA
*
68812480 ATAAGTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTA
68812503 ATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTT
68812525 TCACTTCCTC
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
23 24 0.40
24 21 0.35
25 15 0.25
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (23 bp):
ATAACTGGGGCATAAGCCCTTTA
Found at i:68812599 original size:20 final size:20
Alignment explanation
Indices: 68812574--68812640 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
68812564 TTATGAGTAC
68812574 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
68812594 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
68812614 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
68812634 ACCATGT
1 ATCATGT
68812641 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:68812605 original size:11 final size:11
Alignment explanation
Indices: 68812574--68812629 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
68812564 TTATGAGTAC
68812574 ATCATGTGCAT
1 ATCATGTGCAT
*
68812585 ATCA--TACAT
1 ATCATGTGCAT
68812594 ATCATGTGCAT
1 ATCATGTGCAT
*
68812605 ATCA--TACAT
1 ATCATGTGCAT
*
68812614 GTCATGTGCAT
1 ATCATGTGCAT
68812625 ATCAT
1 ATCAT
68812630 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:68812705 original size:25 final size:25
Alignment explanation
Indices: 68812677--68812724 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
68812667 ATACATAAAC
* * *
68812677 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
68812702 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
68812725 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:68819066 original size:31 final size:31
Alignment explanation
Indices: 68819022--68819085 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
68819012 CCTTTTCATA
*
68819022 TTTCATATGTCATAACACTGGGCCGAAGCCT
1 TTTCAAATGTCATAACACTGGGCCGAAGCCT
* **
68819053 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATGTCATAACACTGGGCCGAAGCCT
68819084 TT
1 TT
68819086 ACTGTAAATG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.34
Consensus pattern (31 bp):
TTTCAAATGTCATAACACTGGGCCGAAGCCT
Found at i:68819331 original size:24 final size:24
Alignment explanation
Indices: 68819279--68819396 Score: 152
Period size: 23 Copynumber: 5.0 Consensus size: 24
68819269 GCTTCATCAT
*
68819279 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
68819304 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
68819328 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
68819351 ATAACTGGGGCATAAGCCC-TTTC
1 ATAACTGGGGCATAAGCCCTTTTA
*
68819374 ATAACTAGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
68819397 TCACTTCCTC
Statistics
Matches: 84, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
23 43 0.51
24 29 0.35
25 12 0.14
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:68819471 original size:20 final size:20
Alignment explanation
Indices: 68819446--68819512 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
68819436 TTATGAGTAC
68819446 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
68819466 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
68819486 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
68819506 ACCATGT
1 ATCATGT
68819513 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:68819477 original size:11 final size:11
Alignment explanation
Indices: 68819446--68819501 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
68819436 TTATGAGTAC
68819446 ATCATGTGCAT
1 ATCATGTGCAT
*
68819457 ATCA--TACAT
1 ATCATGTGCAT
68819466 ATCATGTGCAT
1 ATCATGTGCAT
*
68819477 ATCA--TACAT
1 ATCATGTGCAT
*
68819486 GTCATGTGCAT
1 ATCATGTGCAT
68819497 ATCAT
1 ATCAT
68819502 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:68825244 original size:25 final size:24
Alignment explanation
Indices: 68825207--68825270 Score: 67
Period size: 26 Copynumber: 2.5 Consensus size: 24
68825197 ATTAATGGCC
*
68825207 TTAATATATGTTATTTTGTAA-TGGA
1 TTAATA-A-GTTATTTGGTAATTGGA
68825232 TTAAATAAGGTTAATTTGGTAATTGGA
1 TT-AATAA-GTT-ATTTGGTAATTGGA
68825259 TTAATAAGTTAT
1 TTAATAAGTTAT
68825271 AATTAAATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
24 2 0.06
25 9 0.26
26 17 0.50
27 6 0.18
ACGTcount: A:0.36, C:0.00, G:0.17, T:0.47
Consensus pattern (24 bp):
TTAATAAGTTATTTGGTAATTGGA
Found at i:68826506 original size:21 final size:21
Alignment explanation
Indices: 68826480--68826520 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
68826470 TAAATATGCT
68826480 ATATGTACAAATGAAT-TGAGG
1 ATATGT-CAAATGAATATGAGG
*
68826501 ATATGTGAAATGAATATGAG
1 ATATGTCAAATGAATATGAG
68826521 CTATATGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.44, C:0.02, G:0.24, T:0.29
Consensus pattern (21 bp):
ATATGTCAAATGAATATGAGG
Found at i:68831008 original size:27 final size:27
Alignment explanation
Indices: 68830977--68831154 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
68830967 TAAATTGTAC
68830977 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
68831004 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
68831030 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
68831058 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
68831086 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
68831113 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
68831140 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
68831155 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:68831091 original size:82 final size:81
Alignment explanation
Indices: 68830978--68831133 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
68830968 AAATTGTACA
* *
68830978 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
68831042 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
68831059 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
68831124 TGCGAGTTGA
65 TGCGAATTGA
68831134 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:68831145 original size:82 final size:81
Alignment explanation
Indices: 68830974--68831154 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
68830964 GATTAAATTG
* *
68830974 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
68831039 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
68831055 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
68831119 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
68831137 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
68831155 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:68840175 original size:11 final size:11
Alignment explanation
Indices: 68840139--68840194 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
68840129 CATGGTATAT
68840139 ATGATATGCAC
1 ATGATATGCAC
* *
68840150 ATGACATG--T
1 ATGATATGCAC
68840159 ATGATATGCAC
1 ATGATATGCAC
*
68840170 ATGATATG--T
1 ATGATATGCAC
68840179 ATGATATGCAC
1 ATGATATGCAC
68840190 ATGAT
1 ATGAT
68840195 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:68840194 original size:20 final size:20
Alignment explanation
Indices: 68840128--68840194 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
68840118 ATTTTGATAA
* *
68840128 ACATGGTATATATGATATGC
1 ACATGATATGTATGATATGC
*
68840148 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
68840168 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
68840188 ACATGAT
1 ACATGAT
68840195 GTATTCATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:68840271 original size:24 final size:24
Alignment explanation
Indices: 68840244--68840398 Score: 265
Period size: 24 Copynumber: 6.4 Consensus size: 24
68840234 GAGGAAGTGC
68840244 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
68840268 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
68840292 AAAAAGGGCTTATGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTATT
* *
68840317 AAAAGGGCTTATTCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
68840341 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
68840365 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
68840389 AAAAGAGGCT
1 AAAAG-GGCT
68840399 AGACATCCAG
Statistics
Matches: 124, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
24 96 0.77
25 28 0.23
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:68840316 original size:49 final size:49
Alignment explanation
Indices: 68840244--68840392 Score: 264
Period size: 49 Copynumber: 3.1 Consensus size: 49
68840234 GAGGAAGTGC
68840244 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTA
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTA
* *
68840293 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATTCCCCAGTTA-TC
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTA
*
68840341 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCCAGTTATTA
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTA
68840390 AAA
1 AAA
68840393 GAGGCTAGAC
Statistics
Matches: 94, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
48 45 0.48
49 49 0.52
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (49 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTA
Found at i:68840363 original size:73 final size:72
Alignment explanation
Indices: 68840244--68840398 Score: 265
Period size: 73 Copynumber: 2.1 Consensus size: 72
68840234 GAGGAAGTGC
*
68840244 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTATGCCC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT-AAAAGGGCTTATGCCC
68840309 CAGTTATT
65 CAGTTATT
* *
68840317 AAAAGGGCTTATTCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCC
68840382 AGTTATT
66 AGTTATT
68840389 AAAAGAGGCT
1 AAAAG-GGCT
68840399 AGACATCCAG
Statistics
Matches: 78, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
72 28 0.36
73 50 0.64
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCC
AGTTATT
Found at i:68844400 original size:27 final size:27
Alignment explanation
Indices: 68844370--68844547 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
68844360 ATATTGAGTC
* *
68844370 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
68844397 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
68844424 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
68844452 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* ***
68844479 CGCACACTTAGTGC-ATCATATTCGTTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
68844506 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
68844533 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
68844548 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:68852504 original size:27 final size:27
Alignment explanation
Indices: 68852474--68852624 Score: 151
Period size: 27 Copynumber: 5.6 Consensus size: 27
68852464 ATATTGAGTC
* *
68852474 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
68852501 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
68852528 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
68852556 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* ***
68852583 CGCACACTTAGTGC-ATCATATTCGTTT
1 CGCACACTTAGTGCTA-CATAATCAACT
68852610 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
68852625 GTACAATTTA
Statistics
Matches: 105, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
27 82 0.78
28 23 0.22
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:68852566 original size:55 final size:54
Alignment explanation
Indices: 68852474--68852623 Score: 158
Period size: 55 Copynumber: 2.8 Consensus size: 54
68852464 ATATTGAGTC
* * * *
68852474 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAATCAAAT
* * ** *
68852528 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCCACATAATCAAAT
* ***
68852583 CGCACACTTAGTGC-ATCATATTCGTTTCGCACACTTAGTGC
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGC
68852624 TGTACAATTT
Statistics
Matches: 81, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
54 36 0.44
55 45 0.56
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAATCAAAT
Found at i:68859618 original size:24 final size:24
Alignment explanation
Indices: 68859587--68859646 Score: 111
Period size: 24 Copynumber: 2.5 Consensus size: 24
68859577 TTATAACATG
*
68859587 AAAATGACCATTTTGCCCTAGGTA
1 AAAATGACCATTTTGCCCTAAGTA
68859611 AAAATGACCATTTTGCCCTAAGTA
1 AAAATGACCATTTTGCCCTAAGTA
68859635 AAAATGACCATT
1 AAAATGACCATT
68859647 ATACCCCTAG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.38, C:0.20, G:0.13, T:0.28
Consensus pattern (24 bp):
AAAATGACCATTTTGCCCTAAGTA
Found at i:68859741 original size:11 final size:11
Alignment explanation
Indices: 68859704--68859760 Score: 59
Period size: 11 Copynumber: 5.5 Consensus size: 11
68859694 ACATGGTATG
68859704 CATGATATGCA
1 CATGATATGCA
*
68859715 CATGACATG--
1 CATGATATGCA
*
68859724 TATGATATGCA
1 CATGATATGCA
68859735 CATGATATG--
1 CATGATATGCA
*
68859744 TATGATATGCA
1 CATGATATGCA
68859755 CATGAT
1 CATGAT
68859761 GTATTCATAA
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
9 15 0.42
11 21 0.58
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (11 bp):
CATGATATGCA
Found at i:68859760 original size:20 final size:20
Alignment explanation
Indices: 68859694--68859760 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
68859684 ATTTTGATAA
* *
68859694 ACATGGTATGCATGATATGC
1 ACATGATATGTATGATATGC
*
68859714 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
68859734 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
68859754 ACATGAT
1 ACATGAT
68859761 GTATTCATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.34, C:0.13, G:0.21, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:68859837 original size:24 final size:24
Alignment explanation
Indices: 68859810--68859910 Score: 166
Period size: 24 Copynumber: 4.2 Consensus size: 24
68859800 GAGGAAGTGC
*
68859810 AAAAGGGCTTATGCCCCAGTCATT
1 AAAAGGGCTTATGCCCCAGTTATT
68859834 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
68859858 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* * *
68859882 AAAAGGGCTTTTACCCAAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
68859906 AAAAG
1 AAAAG
68859911 AGGTAAGGCC
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 73 1.00
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:68872799 original size:37 final size:37
Alignment explanation
Indices: 68872739--68872816 Score: 102
Period size: 37 Copynumber: 2.1 Consensus size: 37
68872729 TATTACGAAG
* * *
68872739 TCTTACCCGGACATAATCTCCACACGAAGTTATCGGA
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
* * *
68872776 TCTTAGCCGGACAAAATCCCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
68872813 TCTT
1 TCTT
68872817 TAGAGCTCGG
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
Found at i:68873108 original size:49 final size:49
Alignment explanation
Indices: 68872935--68873343 Score: 584
Period size: 49 Copynumber: 8.3 Consensus size: 49
68872925 CCCTTCGGGA
* * * *
68872935 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68872982 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68873029 C-TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68873075 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68873124 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68873173 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68873222 CTTATCACATATATATTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC---------AT---ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68873283 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68873330 CTTATCTCATATAT
1 CTTATCACATATAT
68873344 GCATGTTCAC
Statistics
Matches: 336, Mismatches: 7, Indels: 36
0.89 0.02 0.09
Matches are distributed among these distances:
46 47 0.14
47 93 0.28
49 148 0.44
58 2 0.01
61 46 0.14
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:68873242 original size:14 final size:14
Alignment explanation
Indices: 68873223--68873250 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
68873213 CCATTAGGCC
68873223 TTATCACATATATA
1 TTATCACATATATA
68873237 TTATCACATATATA
1 TTATCACATATATA
68873251 CACTTTCACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (14 bp):
TTATCACATATATA
Found at i:68873308 original size:63 final size:62
Alignment explanation
Indices: 68873174--68873297 Score: 232
Period size: 61 Copynumber: 2.0 Consensus size: 62
68873164 CCATTAGGCC
68873174 TTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 TTATCACATATATA-ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
68873237 TTATCACATATAT-ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 TTATCACATATATAACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
68873298 CACTTTCACA
Statistics
Matches: 61, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
61 48 0.79
63 13 0.21
ACGTcount: A:0.33, C:0.27, G:0.06, T:0.34
Consensus pattern (62 bp):
TTATCACATATATAACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
Found at i:68873355 original size:110 final size:110
Alignment explanation
Indices: 68873125--68873343 Score: 397
Period size: 110 Copynumber: 2.0 Consensus size: 110
68873115 CCATTAGGCC
68873125 TTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 TTATCACATATATA-ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA-A
68873190 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
64 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
68873237 TTATCACATATAT-ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT-ACA
1 TTATCACATATATAACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAACA
*
68873300 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATAT
66 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
68873344 GCATGTTCAC
Statistics
Matches: 106, Mismatches: 1, Indels: 4
0.95 0.01 0.04
Matches are distributed among these distances:
108 46 0.43
110 47 0.44
112 13 0.12
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.33
Consensus pattern (110 bp):
TTATCACATATATAACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAACA
CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
Found at i:68873404 original size:159 final size:157
Alignment explanation
Indices: 68873076--68873366 Score: 444
Period size: 159 Copynumber: 1.8 Consensus size: 157
68873066 CCATTAGGCC
68873076 TTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 TTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA-A
*
68873141 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATC
63 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA-ACACTTTCACATCCATC
* * * **
68873206 ACATCGGCCATTAGGCCTTATCACATATATA
127 ACATAGGCCATAAAGCAATATCACATATATA
68873237 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT-ACAC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAACAC
* *
68873301 TTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATAT-GCA-TGTTCACATCCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAACACT-TTCACATCCATCACA
68873364 TAG
130 TAG
68873367 AATCCTAAAT
Statistics
Matches: 125, Mismatches: 4, Indels: 8
0.91 0.03 0.06
Matches are distributed among these distances:
154 1 0.01
155 18 0.14
157 46 0.37
159 53 0.42
161 7 0.06
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.33
Consensus pattern (157 bp):
TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAACACTTTCACATCCATCACAT
AGGCCATAAAGCAATATCACATATATA
Found at i:68875677 original size:85 final size:85
Alignment explanation
Indices: 68875548--68875726 Score: 340
Period size: 85 Copynumber: 2.1 Consensus size: 85
68875538 TATTTTATTG
*
68875548 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
68875613 TAACCATAACATCTTGTCCA
66 TAACCATAACATCTTGTCCA
68875633 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
*
68875698 TAGCCATAACATCTTGTCCA
66 TAACCATAACATCTTGTCCA
68875718 CCCATGCTC
1 CCCATGCTC
68875727 ATGGCCGACC
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.27, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAACCATAACATCTTGTCCA
Found at i:68887955 original size:29 final size:29
Alignment explanation
Indices: 68887921--68887994 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
68887911 TAATCAATTG
*
68887921 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
68887950 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
68887979 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
68887995 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:68891375 original size:24 final size:24
Alignment explanation
Indices: 68891348--68891419 Score: 135
Period size: 24 Copynumber: 3.0 Consensus size: 24
68891338 TCTTCAACAG
68891348 AAAGACTCAAAATTGAACTTTTTC
1 AAAGACTCAAAATTGAACTTTTTC
68891372 AAAGACTCAAAATTGAACTTTTTC
1 AAAGACTCAAAATTGAACTTTTTC
*
68891396 AAAGACTCAAAATTTAACTTTTTC
1 AAAGACTCAAAATTGAACTTTTTC
68891420 TGCAAATATT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.35
Consensus pattern (24 bp):
AAAGACTCAAAATTGAACTTTTTC
Found at i:68893108 original size:165 final size:165
Alignment explanation
Indices: 68892829--68893156 Score: 602
Period size: 165 Copynumber: 2.0 Consensus size: 165
68892819 AACCAAATAG
* *
68892829 TAGGAAATAAACCATGTCAGTTCAGTCTGAAGGGTAAACCGCCCCATTTTTAACCTTATAACTTT
1 TAGGAAATAAACCAGGTCAGTTCAGTCTGAAGGGTAAACCGCCCCATTTTTAACCTTACAACTTT
*
68892894 TTCGCCGATCAGTGGCAAGAGTCTCGTTAGTGGCGGACTCTTTGTCTACGCTATAACAAGATTTA
66 TTCGCCGATCAGTGGCAAGAGTCTCGTTAGTGGCGGACTCTTGGTCTACGCTATAACAAGATTTA
68892959 AATTTATTAATAAATGGATATTTATGTAATTCTCA
131 AATTTATTAATAAATGGATATTTATGTAATTCTCA
68892994 TAGGAAATAAACCAGGTCAGTTCAGTCTGAAGGGTAAACCGCCCCATTTTTAACCTTACAACTTT
1 TAGGAAATAAACCAGGTCAGTTCAGTCTGAAGGGTAAACCGCCCCATTTTTAACCTTACAACTTT
* *
68893059 TTCGCCGATCAGTGGCAAGAGTCTCGTTAGTGGCGGACTCTTGGTCTACGTTATAACAAGGTTTA
66 TTCGCCGATCAGTGGCAAGAGTCTCGTTAGTGGCGGACTCTTGGTCTACGCTATAACAAGATTTA
*
68893124 AATTTATTAATAAATGGATGTTTATGTAATTCT
131 AATTTATTAATAAATGGATATTTATGTAATTCT
68893157 TATAATTCTA
Statistics
Matches: 157, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
165 157 1.00
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.34
Consensus pattern (165 bp):
TAGGAAATAAACCAGGTCAGTTCAGTCTGAAGGGTAAACCGCCCCATTTTTAACCTTACAACTTT
TTCGCCGATCAGTGGCAAGAGTCTCGTTAGTGGCGGACTCTTGGTCTACGCTATAACAAGATTTA
AATTTATTAATAAATGGATATTTATGTAATTCTCA
Found at i:68894364 original size:4 final size:4
Alignment explanation
Indices: 68894357--68894395 Score: 78
Period size: 4 Copynumber: 9.8 Consensus size: 4
68894347 CTCTTCTTTC
68894357 TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAA
1 TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAA
68894396 GGACTCATAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (4 bp):
TAAT
Found at i:68896992 original size:47 final size:47
Alignment explanation
Indices: 68896921--68897233 Score: 325
Period size: 47 Copynumber: 6.7 Consensus size: 47
68896911 TGGGTAAGGT
*
68896921 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAA
*
68896968 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAA
* * * *
68897015 GTCGATGCCATCTCCCAGACATGGTCTTACACTGACT-ATCATCTCGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCA-CATCTC-AA
* * ** * *
68897063 GCCTATG-CATGTCCCAAACAT-GTCTTACACTGGCTTTCGTCTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTC-AA
* * * *
68897109 GCCGATG-CATGTCCTAGACAT-GTCTTACACTAGCTCTCGTCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAA
* * * * ***
68897154 TGCCGATGCCATTTCCCAAACATGGTCTTACACTGGCTCTCATAATGTG
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-CTCAA
68897203 GCCGATG-CATGTCCCAGACAT-GTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
68897234 AGCCAAAAAT
Statistics
Matches: 228, Mismatches: 31, Indels: 15
0.83 0.11 0.05
Matches are distributed among these distances:
45 1 0.00
46 75 0.33
47 121 0.53
48 30 0.13
49 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAA
Found at i:68897182 original size:140 final size:140
Alignment explanation
Indices: 68896921--68897233 Score: 398
Period size: 140 Copynumber: 2.2 Consensus size: 140
68896911 TGGGTAAGGT
*
68896921 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATCTCAAGTCGATGCCATGTCCCAG
1 GCCGATG-CATGTCCCAAACAT-GTCTTACACTGGCTCACATCTCAAGCCGATGCCATGTCCCAG
* * *
68896986 ACATGGTCTTACACTGGCTCACATCTCAAGTCGATGCCATCTCCCAGACATGGTCTTACACTGAC
64 ACATGGTCTTACACTAGCTCACATCTCAAGCCGATGCCATCTCCCAAACATGGTCTTACACTGAC
*
68897051 TATCAT-CTCGTA
129 TATCATAAT-GTA
* ** * * *
68897063 GCCTATGCATGTCCCAAACATGTCTTACACTGGCTTTCGTCTCGAGGCCGATG-CATGTCCTAGA
1 GCCGATGCATGTCCCAAACATGTCTTACACTGGCTCACATCTC-AAGCCGATGCCATGTCCCAGA
* * * *
68897127 CAT-GTCTTACACTAGCTCTCGTCTCAATGCCGATGCCATTTCCCAAACATGGTCTTACACTGGC
65 CATGGTCTTACACTAGCTCACATCTCAA-GCCGATGCCATCTCCCAAACATGGTCTTACACTGAC
* *
68897191 TCTCATAATGTG
129 TATCATAATGTA
*
68897203 GCCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAAACATGTCTTACACT
68897234 AGCCAAAAAT
Statistics
Matches: 149, Mismatches: 19, Indels: 8
0.85 0.11 0.05
Matches are distributed among these distances:
139 21 0.14
140 100 0.67
141 22 0.15
142 6 0.04
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (140 bp):
GCCGATGCATGTCCCAAACATGTCTTACACTGGCTCACATCTCAAGCCGATGCCATGTCCCAGAC
ATGGTCTTACACTAGCTCACATCTCAAGCCGATGCCATCTCCCAAACATGGTCTTACACTGACTA
TCATAATGTA
Found at i:68902057 original size:29 final size:29
Alignment explanation
Indices: 68902015--68902076 Score: 124
Period size: 29 Copynumber: 2.1 Consensus size: 29
68902005 ATGTATTTTT
68902015 AATATTCCTCCATAATCCATCAAAATACC
1 AATATTCCTCCATAATCCATCAAAATACC
68902044 AATATTCCTCCATAATCCATCAAAATACC
1 AATATTCCTCCATAATCCATCAAAATACC
68902073 AATA
1 AATA
68902077 ACTCATGCAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.44, C:0.29, G:0.00, T:0.27
Consensus pattern (29 bp):
AATATTCCTCCATAATCCATCAAAATACC
Found at i:68903386 original size:47 final size:47
Alignment explanation
Indices: 68903332--68903501 Score: 268
Period size: 47 Copynumber: 3.6 Consensus size: 47
68903322 ATCCATAAGT
*
68903332 GAACTCGGACTCAACTCAAGGAGTTTGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAAGGAGTTCGGATGCCTAGTTACATCTCAC
*
68903379 GAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAAGGAGTTCGGATGCCTAGTTACATCTCAC
*
68903426 GAACTCGGACTCAACTCAAGGAGTTCGGATGCTTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAAGGAGTTCGGATGCCTAGTTACATCTCAC
* ** * *
68903473 AAACTTAGACTCATCTCAATGAGTTCGGA
1 GAACTCGGACTCAACTCAAGGAGTTCGGA
68903502 ACTCAAATAT
Statistics
Matches: 114, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 114 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAAGGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:68906122 original size:9 final size:10
Alignment explanation
Indices: 68906110--68906166 Score: 57
Period size: 9 Copynumber: 5.8 Consensus size: 10
68906100 TATGTGGGAT
68906110 ATGATAT-AC
1 ATGATATGAC
*
68906119 ATGA-ATGAT
1 ATGATATGAC
68906128 ATGATATGCAC
1 ATGATATG-AC
*
68906139 ATGATATG-T
1 ATGATATGAC
68906148 ATGATATGCAC
1 ATGATATG-AC
68906159 ATGATATG
1 ATGATATG
68906167 TATTAAATGC
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
8 2 0.05
9 17 0.44
10 3 0.08
11 17 0.44
ACGTcount: A:0.39, C:0.09, G:0.19, T:0.33
Consensus pattern (10 bp):
ATGATATGAC
Found at i:68906131 original size:5 final size:5
Alignment explanation
Indices: 68906107--68906166 Score: 54
Period size: 5 Copynumber: 12.2 Consensus size: 5
68906097 TGATATGTGG
* *
68906107 GATAT GATAT -ACAT GA-AT GATAT GATAT GCACAT GATAT G-TAT GATAT
1 GATAT GATAT GATAT GATAT GATAT GATAT G-ATAT GATAT GATAT GATAT
*
68906155 GCACAT GATAT G
1 G-ATAT GATAT G
68906167 TATTAAATGC
Statistics
Matches: 45, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
4 11 0.24
5 26 0.58
6 8 0.18
ACGTcount: A:0.38, C:0.08, G:0.20, T:0.33
Consensus pattern (5 bp):
GATAT
Found at i:68906142 original size:20 final size:20
Alignment explanation
Indices: 68906109--68906183 Score: 102
Period size: 20 Copynumber: 3.9 Consensus size: 20
68906099 ATATGTGGGA
68906109 TATGATAT--ACATGA-ATG
1 TATGATATGCACATGATATG
68906126 ATATGATATGCACATGATATG
1 -TATGATATGCACATGATATG
68906147 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
* *
68906167 TATTAAATGCACATGAT
1 TATGATATGCACATGAT
68906184 GTAATCATAA
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
18 8 0.15
20 41 0.79
21 3 0.06
ACGTcount: A:0.39, C:0.09, G:0.17, T:0.35
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:68906144 original size:11 final size:11
Alignment explanation
Indices: 68906128--68906166 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
68906118 CATGAATGAT
68906128 ATGATATGCAC
1 ATGATATGCAC
*
68906139 ATGATATG--T
1 ATGATATGCAC
68906148 ATGATATGCAC
1 ATGATATGCAC
68906159 ATGATATG
1 ATGATATG
68906167 TATTAAATGC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
9 8 0.33
11 16 0.67
ACGTcount: A:0.36, C:0.10, G:0.21, T:0.33
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:68906261 original size:25 final size:25
Alignment explanation
Indices: 68906233--68906326 Score: 102
Period size: 26 Copynumber: 3.7 Consensus size: 25
68906223 GAGGAAGTGC
68906233 AAAAGGGCTATGCCCCAGTTTATTG
1 AAAAGGGCTATGCCCCAGTTTATTG
* **
68906258 AAAAGGGCTTATGCCCTAGTTTACCG
1 AAAAGGGC-TATGCCCCAGTTTATTG
*
68906284 AAAAGGGCTTTGCCCCAG-TTATT-
1 AAAAGGGCTATGCCCCAGTTTATTG
*
68906307 AAAAGAGGCTAGGCCTCCAG
1 AAAAG-GGCTATGCC-CCAG
68906327 ATATATGAAA
Statistics
Matches: 57, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
23 5 0.09
24 10 0.18
25 20 0.35
26 22 0.39
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTATGCCCCAGTTTATTG
Found at i:68906278 original size:26 final size:26
Alignment explanation
Indices: 68906233--68906316 Score: 104
Period size: 26 Copynumber: 3.3 Consensus size: 26
68906223 GAGGAAGTGC
68906233 AAAAGGGC-TATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
68906258 AAAAGGGCTTATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
68906284 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
68906307 AAAAGAGGCT
1 AAAAG-GGCT
68906317 AGGCCTCCAG
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
23 5 0.10
24 7 0.14
25 15 0.29
26 24 0.47
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:68911449 original size:57 final size:57
Alignment explanation
Indices: 68911381--68911495 Score: 212
Period size: 57 Copynumber: 2.0 Consensus size: 57
68911371 GAAAATAAGA
* *
68911381 TGATATTTTCTATTACCATCTTTTAATTGTTTCAATTTCCAATTTAGTCCTTGTCCT
1 TGATATTTTCTATTACCATCTTTTAATTATTTCAATTTCCAATTTAGTCATTGTCCT
68911438 TGATATTTTCTATTACCATCTTTTAATTATTTCAATTTCCAATTTAGTCATTGTCCT
1 TGATATTTTCTATTACCATCTTTTAATTATTTCAATTTCCAATTTAGTCATTGTCCT
68911495 T
1 T
68911496 CTTTAAATTT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.23, C:0.18, G:0.06, T:0.53
Consensus pattern (57 bp):
TGATATTTTCTATTACCATCTTTTAATTATTTCAATTTCCAATTTAGTCATTGTCCT
Found at i:68920700 original size:27 final size:27
Alignment explanation
Indices: 68920678--68920758 Score: 92
Period size: 27 Copynumber: 3.0 Consensus size: 27
68920668 TCATTTTGCC
*
68920678 CTACAAGGATATTTCGGTAATTTTATA
1 CTACAAGGATATTTCGGTAATTTTACA
*
68920705 CTATAAGGGA-ATTTCGGTAATTTTACA
1 CTACAA-GGATATTTCGGTAATTTTACA
* * * *
68920732 CTACAGGGGTATTTTGATAATTTTACA
1 CTACAAGGATATTTCGGTAATTTTACA
68920759 AATTGAGATT
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
26 2 0.04
27 40 0.89
28 3 0.07
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (27 bp):
CTACAAGGATATTTCGGTAATTTTACA
Found at i:68920778 original size:54 final size:54
Alignment explanation
Indices: 68920715--68920895 Score: 231
Period size: 54 Copynumber: 3.4 Consensus size: 54
68920705 CTATAAGGGA
* * * * * **
68920715 ATTTCGGTAATTTTAC-ACTACAGGGGTATTTTGATAATTTTACAAATTGAGATT
1 ATTTTGGTAATTTTACAAAT-CGGGGGTATTTTGATAATTTTACAAACTGGGGCT
*
68920769 ATTTTGGTAATTTTACAAATCGGGGGTATTTTGGTAATTTTACAAACTGGGGCT
1 ATTTTGGTAATTTTACAAATCGGGGGTATTTTGATAATTTTACAAACTGGGGCT
* *
68920823 ATTTTTGTAATTTTACAAATCGGGGGTATTTT-AGTAATTTTACAAACTGGGGGT
1 ATTTTGGTAATTTTACAAATCGGGGGTATTTTGA-TAATTTTACAAACTGGGGCT
*
68920877 ATTTTAGTAATTTTACAAA
1 ATTTTGGTAATTTTACAAA
68920896 CTAAGGTCTT
Statistics
Matches: 113, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
54 111 0.98
55 2 0.02
ACGTcount: A:0.30, C:0.08, G:0.19, T:0.43
Consensus pattern (54 bp):
ATTTTGGTAATTTTACAAATCGGGGGTATTTTGATAATTTTACAAACTGGGGCT
Found at i:68920805 original size:81 final size:81
Alignment explanation
Indices: 68920715--68920896 Score: 235
Period size: 81 Copynumber: 2.2 Consensus size: 81
68920705 CTATAAGGGA
* * * * *
68920715 ATTTCGGTAATTTTACACTACAGGGG-TA-TTTTGATAATTTTACAAATTGAGATTATTTTGGTA
1 ATTTTGGTAATTTTACA-AACAGGGGCTATTTTTG-TAATTTTACAAATCGAGAGTATTTTAGTA
68920778 ATTTTACAAA-TCGGGGGT
64 ATTTTACAAACT-GGGGGT
* * *
68920796 ATTTTGGTAATTTTACAAACTGGGGCTATTTTTGTAATTTTACAAATCGGGGGTATTTTAGTAAT
1 ATTTTGGTAATTTTACAAACAGGGGCTATTTTTGTAATTTTACAAATCGAGAGTATTTTAGTAAT
68920861 TTTACAAACTGGGGGT
66 TTTACAAACTGGGGGT
*
68920877 ATTTTAGTAATTTTACAAAC
1 ATTTTGGTAATTTTACAAAC
68920897 TAAGGTCTTA
Statistics
Matches: 89, Mismatches: 9, Indels: 6
0.86 0.09 0.06
Matches are distributed among these distances:
80 6 0.07
81 77 0.87
82 6 0.07
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.42
Consensus pattern (81 bp):
ATTTTGGTAATTTTACAAACAGGGGCTATTTTTGTAATTTTACAAATCGAGAGTATTTTAGTAAT
TTTACAAACTGGGGGT
Found at i:68920896 original size:27 final size:27
Alignment explanation
Indices: 68920737--68920897 Score: 202
Period size: 27 Copynumber: 6.0 Consensus size: 27
68920727 TTACACTACA
*
68920737 GGGGTATTTT-GATAATTTTACAAATTG
1 GGGGTATTTTAG-TAATTTTACAAACTG
* ** *
68920764 AGATTATTTTGGTAATTTTACAAA-TCG
1 GGGGTATTTTAGTAATTTTACAAACT-G
*
68920791 GGGGTATTTTGGTAATTTTACAAACTG
1 GGGGTATTTTAGTAATTTTACAAACTG
* *
68920818 GGGCTATTTTTGTAATTTTACAAA-TCG
1 GGGGTATTTTAGTAATTTTACAAACT-G
68920845 GGGGTATTTTAGTAATTTTACAAACTG
1 GGGGTATTTTAGTAATTTTACAAACTG
68920872 GGGGTATTTTAGTAATTTTACAAACT
1 GGGGTATTTTAGTAATTTTACAAACT
68920898 AAGGTCTTAA
Statistics
Matches: 119, Mismatches: 10, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
26 2 0.02
27 114 0.96
28 3 0.03
ACGTcount: A:0.29, C:0.07, G:0.20, T:0.43
Consensus pattern (27 bp):
GGGGTATTTTAGTAATTTTACAAACTG
Found at i:68930624 original size:27 final size:27
Alignment explanation
Indices: 68930593--68930770 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
68930583 TAAATTGTAC
68930593 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
68930620 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
68930646 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
68930674 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
68930702 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
68930729 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
68930756 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
68930771 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:68930707 original size:82 final size:81
Alignment explanation
Indices: 68930594--68930749 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
68930584 AAATTGTACA
* *
68930594 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
68930658 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
68930675 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
68930740 TGCGAGTTGA
65 TGCGAATTGA
68930750 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:68930761 original size:82 final size:81
Alignment explanation
Indices: 68930590--68930770 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
68930580 GATTAAATTG
* *
68930590 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
68930655 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
68930671 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
68930735 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
68930753 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
68930771 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:68938759 original size:27 final size:27
Alignment explanation
Indices: 68938728--68938905 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
68938718 TAAATTGTAC
68938728 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
68938755 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
68938781 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
68938809 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
68938837 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
68938864 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
68938891 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
68938906 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:68938842 original size:82 final size:81
Alignment explanation
Indices: 68938729--68938884 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
68938719 AAATTGTACA
* *
68938729 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
68938793 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
68938810 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
68938875 TGCGAGTTGA
65 TGCGAATTGA
68938885 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:68938896 original size:82 final size:81
Alignment explanation
Indices: 68938725--68938905 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
68938715 GATTAAATTG
* *
68938725 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
68938790 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
68938806 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
68938870 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
68938888 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
68938906 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:68940630 original size:56 final size:56
Alignment explanation
Indices: 68940589--68940855 Score: 381
Period size: 56 Copynumber: 4.8 Consensus size: 56
68940579 CCTCAGACAA
* * * *
68940589 GGTCTTACTCGTACACAAATATCGGAGTCATATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTCGCACACATATATCGGAGTCACATATCGATGCCAACGTATTAAACAT
* *
68940645 GGTCTTACTCGCACATATATATCGGAGTCACATATTGATGCCAACGTATTAAACAT
1 GGTCTTACTCGCACACATATATCGGAGTCACATATCGATGCCAACGTATTAAACAT
* * **
68940701 GGTCTTACTCGCACACATATATCAGAGTCACATATCGATGCCAATGTATTAAATGT
1 GGTCTTACTCGCACACATATATCGGAGTCACATATCGATGCCAACGTATTAAACAT
* * *
68940757 GGACTTACTCGCACATATATATCGGAGTCACATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTCGCACACATATATCGGAGTCACATATCGATGCCAACGTATTAAACAT
* * **
68940813 GGACTTACTCGCACATATATATCAAAGTCACATATCGATGCCA
1 GGTCTTACTCGCACACATATATCGGAGTCACATATCGATGCCA
68940856 CATATACTTC
Statistics
Matches: 192, Mismatches: 19, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 192 1.00
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.28
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGGAGTCACATATCGATGCCAACGTATTAAACAT
Found at i:68940764 original size:112 final size:112
Alignment explanation
Indices: 68940589--68940855 Score: 426
Period size: 112 Copynumber: 2.4 Consensus size: 112
68940579 CCTCAGACAA
* * * * *
68940589 GGTCTTACTCGTACACAAATATCGGAGTCATATATCGATGCCAACGTATTAAACGTGGTCTTACT
1 GGTCTTACTCGCACACATATATCAGAGTCACATATCGATGCCAACGTATTAAACGTGGACTTACT
*
68940654 CGCACATATATATCGGAGTCACATATTGATGCCAACGTATTAAACAT
66 CGCACATATATATCGGAGTCACATATCGATGCCAACGTATTAAACAT
* *
68940701 GGTCTTACTCGCACACATATATCAGAGTCACATATCGATGCCAATGTATTAAATGTGGACTTACT
1 GGTCTTACTCGCACACATATATCAGAGTCACATATCGATGCCAACGTATTAAACGTGGACTTACT
*
68940766 CGCACATATATATCGGAGTCACATATCGATGCCAACGTATTAAACGT
66 CGCACATATATATCGGAGTCACATATCGATGCCAACGTATTAAACAT
* * *
68940813 GGACTTACTCGCACATATATATCAAAGTCACATATCGATGCCA
1 GGTCTTACTCGCACACATATATCAGAGTCACATATCGATGCCA
68940856 CATATACTTC
Statistics
Matches: 143, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
112 143 1.00
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.28
Consensus pattern (112 bp):
GGTCTTACTCGCACACATATATCAGAGTCACATATCGATGCCAACGTATTAAACGTGGACTTACT
CGCACATATATATCGGAGTCACATATCGATGCCAACGTATTAAACAT
Found at i:68940966 original size:2 final size:2
Alignment explanation
Indices: 68940959--68940983 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
68940949 AAATAATCGA
68940959 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
68940984 CATTTAACCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:68943642 original size:27 final size:28
Alignment explanation
Indices: 68943624--68943754 Score: 143
Period size: 27 Copynumber: 4.9 Consensus size: 28
68943614 TTTGCGCTAC
68943624 AGGGGTATTTCTG-TAATTTTACACTAT
1 AGGGGTATTTCTGATAATTTTACACTAT
*
68943651 AAGGGTATTTC-GATAATTTTACACTAT
1 AGGGGTATTTCTGATAATTTTACACTAT
68943678 AGGGGTATTT-TGATAATTTTACAAACTA-
1 AGGGGTATTTCTGATAATTTTAC--ACTAT
* *
68943706 A-GGATATTTC-GATAATTTTACA-AACT
1 AGGGGTATTTCTGATAATTTTACACTA-T
*
68943732 GGGGGTATTTC-GATAATTTTACA
1 AGGGGTATTTCTGATAATTTTACA
68943755 AATCAATGGT
Statistics
Matches: 90, Mismatches: 6, Indels: 16
0.80 0.05 0.14
Matches are distributed among these distances:
24 1 0.01
25 1 0.01
26 1 0.01
27 82 0.91
28 1 0.01
29 4 0.04
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (28 bp):
AGGGGTATTTCTGATAATTTTACACTAT
Found at i:68943670 original size:54 final size:54
Alignment explanation
Indices: 68943620--68943812 Score: 175
Period size: 54 Copynumber: 3.6 Consensus size: 54
68943610 TCATTTTGCG
* *
68943620 CTACAGGGGTATTTCTG-TAATTTTACACTA-TAAGGGTATTTCGATAATTTTACA
1 CTACAGGGGTATTT-TGATAATTTTACA-AACTAAGGATATTTCGATAATTTTACA
*
68943674 CTATAGGGGTATTTTGATAATTTTACAAACTAAGGATATTTCGATAATTTTACA
1 CTACAGGGGTATTTTGATAATTTTACAAACTAAGGATATTTCGATAATTTTACA
* * * *
68943728 -AACTGGGGGTATTTCGATAATTTTACAAA-TCAATGG-TGTTTC-AGTAATTTTACA
1 CTAC-AGGGGTATTTTGATAATTTTACAAACT-AA-GGATATTTCGA-TAATTTTACA
* * * *
68943782 -AATCGGGGGTATTTCGGTAATTTTACAAACT
1 CTA-CAGGGGTATTTTGATAATTTTACAAACT
68943813 GGAGGTATTT
Statistics
Matches: 122, Mismatches: 9, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
53 6 0.05
54 112 0.92
55 4 0.03
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.39
Consensus pattern (54 bp):
CTACAGGGGTATTTTGATAATTTTACAAACTAAGGATATTTCGATAATTTTACA
Found at i:68943755 original size:27 final size:27
Alignment explanation
Indices: 68943653--68943864 Score: 202
Period size: 27 Copynumber: 7.9 Consensus size: 27
68943643 TACACTATAA
* *
68943653 GGGTATTTCGATAATTTTACACTA-TAG
1 GGGTATTTCGATAATTTTACA-AACTGG
* **
68943680 GGGTATTTTGATAATTTTACAAACTAA
1 GGGTATTTCGATAATTTTACAAACTGG
*
68943707 GGATATTTCGATAATTTTACAAACTGG
1 GGGTATTTCGATAATTTTACAAACTGG
**
68943734 GGGTATTTCGATAATTTTACAAA-TCAA
1 GGGTATTTCGATAATTTTACAAACT-GG
* *
68943761 TGGTGTTTC-AGTAATTTTACAAA-TCGG
1 GGGTATTTCGA-TAATTTTACAAACT-GG
*
68943788 GGGTATTTCGGTAATTTTACAAACTGG
1 GGGTATTTCGATAATTTTACAAACTGG
* *
68943815 AGGTATTT-TAGTAATTTTACAAACTGG
1 GGGTATTTCGA-TAATTTTACAAACTGG
*
68943842 GGGTATTTC-ATTATTTTTACAAA
1 GGGTATTTCGA-TAATTTTACAAA
68943865 TTGAGGTCTT
Statistics
Matches: 155, Mismatches: 23, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
26 3 0.02
27 151 0.97
28 1 0.01
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (27 bp):
GGGTATTTCGATAATTTTACAAACTGG
Done.