Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 211 of 356
Found at i:68947325 original size:46 final size:46
Alignment explanation
Indices: 68947254--68947423 Score: 179
Period size: 46 Copynumber: 3.7 Consensus size: 46
68947244 AACCCGCCCT
* *
68947254 TAAGTGAACTCGGACTCAACCCAACGAGCTCAGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGGCGTTCGCATCCA
* *
68947300 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC--A-GGC--GTTCGCATCCA
* * *
68947348 TCA-CGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGG-CGTTCGCATCCA
*
68947393 TAGGTGAACTCGGACTCAACTCAACGAGTTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC
68947424 CGATGCTCAA
Statistics
Matches: 102, Mismatches: 12, Indels: 20
0.76 0.09 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 1 0.01
46 55 0.54
47 26 0.25
48 3 0.03
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCAGGCGTTCGCATCCA
Found at i:68947418 original size:93 final size:93
Alignment explanation
Indices: 68947259--68947429 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
68947249 GCCCTTAAGT
*
68947259 GAACTCGGACTCAACCCAACGAGCTCAGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACCCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
68947324 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCCGATGCCTAGTTACATCTCAC
* * *
68947352 GAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCATAGGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACCCAACGAGCTCAGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
68947416 ACGAGTTCCGATGC
65 ACGAGTTCCGATGC
68947430 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACCCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCCGATGCCTAGTTACATCTCAC
Found at i:68954720 original size:93 final size:93
Alignment explanation
Indices: 68954608--68954778 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
68954598 GCCCCTAAGT
* *
68954608 GAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGA-CATTAGCATCCATAAGTGAACTCAGACTCAACTCA
*
68954672 ATGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
* * *
68954701 GAACTCGGACTCAACTCAACGAGTTCGGACATTAGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTAGCATCCATAAGTGAACTCAGACTCAACTCAA
68954766 CGAGTTCGGATGC
66 CGAGTTCGGATGC
68954779 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
93 69 0.97
94 2 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTAGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:68954774 original size:46 final size:46
Alignment explanation
Indices: 68954605--68954775 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
68954595 CCCGCCCCTA
* * *
68954605 AGTGAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTAGCATCCAT
* *
68954650 AAGTGAACTCAGACTCAACTCAATGAGTTCGGATGCCTAGTTA-CAT-C-T
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGA-G-C-A-TTAGCATCCAT
*
68954698 CA-CGAACTCGGACTCAACTCAACGAGTTCGGA-CATTAGCATCCAT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTAGCATCCAT
68954743 AGGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 A-GTGAACTCGGACTCAACTCAACGAGTTCGGA
68954776 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 10, Indels: 20
0.78 0.07 0.15
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
44 3 0.03
45 1 0.01
46 55 0.52
47 29 0.28
48 3 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTAGCATCCAT
Found at i:68971081 original size:40 final size:41
Alignment explanation
Indices: 68970887--68971067 Score: 214
Period size: 40 Copynumber: 4.5 Consensus size: 41
68970877 ATGATGTCCA
* * * *
68970887 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAT-AGCCG
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAATCCG
* *
68970927 GACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATTCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAATCCG
*
68970967 GGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAATCCG
*
68971006 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAATCCG
*
68971046 GGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
68971068 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
39 35 0.29
40 77 0.63
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (41 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAATCCG
Found at i:68971087 original size:79 final size:79
Alignment explanation
Indices: 68970936--68971090 Score: 208
Period size: 79 Copynumber: 2.0 Consensus size: 79
68970926 GGACTAAGAT
* **
68970936 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
68971001 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
68971015 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
68971078 TATAT-CGGGTTAA
63 TAAATCCGGGTTAA
68971091 ATTCTGAAGG
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
78 2 0.03
79 43 0.64
80 22 0.33
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:68975696 original size:5 final size:5
Alignment explanation
Indices: 68975686--68975734 Score: 50
Period size: 5 Copynumber: 10.0 Consensus size: 5
68975676 TTAATTGTAG
*
68975686 TAATA TAATA T-A-A TAATA TAATA AAATA TAATA -ATATAA TAATA TAATA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TA-AT-A TAATA TAATA
68975735 ATATTTACTT
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
3 2 0.05
4 3 0.08
5 28 0.76
6 3 0.08
7 1 0.03
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (5 bp):
TAATA
Found at i:68975703 original size:8 final size:8
Alignment explanation
Indices: 68975690--68975738 Score: 80
Period size: 8 Copynumber: 5.9 Consensus size: 8
68975680 TTGTAGTAAT
68975690 ATAATATA
1 ATAATATA
68975698 ATAATATA
1 ATAATATA
68975706 ATAAAATATA
1 AT--AATATA
68975716 ATAATATA
1 ATAATATA
68975724 ATAATATA
1 ATAATATA
68975732 ATAATAT
1 ATAATAT
68975739 TTACTTAAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
8 31 0.79
10 8 0.21
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (8 bp):
ATAATATA
Found at i:68975704 original size:13 final size:13
Alignment explanation
Indices: 68975686--68975734 Score: 73
Period size: 13 Copynumber: 3.8 Consensus size: 13
68975676 TTAATTGTAG
68975686 TAATATAATATAA
1 TAATATAATATAA
*
68975699 TAATATAATAAAA
1 TAATATAATATAA
68975712 T-ATAATAATATAA
1 TAAT-ATAATATAA
68975725 TAATATAATA
1 TAATATAATA
68975735 ATATTTACTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
12 2 0.06
13 28 0.88
14 2 0.06
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (13 bp):
TAATATAATATAA
Found at i:68981742 original size:39 final size:39
Alignment explanation
Indices: 68981625--68981847 Score: 233
Period size: 39 Copynumber: 5.6 Consensus size: 39
68981615 GCTCCTCGTT
* * *
68981625 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCACA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
68981665 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
*
68981705 CAAATGCCTTCCGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
68981744 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
* * *
68981783 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATC-TCGCA
68981824 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
68981848 CATCATTCAA
Statistics
Matches: 162, Mismatches: 14, Indels: 15
0.85 0.07 0.08
Matches are distributed among these distances:
39 92 0.57
40 59 0.36
41 11 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:68981802 original size:79 final size:80
Alignment explanation
Indices: 68981625--68981847 Score: 248
Period size: 79 Copynumber: 2.8 Consensus size: 80
68981615 GCTCCTCGTT
* * * *
68981625 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCACACAAATGCCTTCGGGACTTAACCC
1 CAAATGCCTTC-GGACTTAGCCCGGAAT-TAGTAATCTCGCACAAATGCCTTCGGGACTTAGCCC
*
68981688 GGATTTAGTAACTCGCA
64 GGAATTAGTAACTCGCA
68981705 CAAATGCCTTCCGG-CTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCG
1 CAAATGCCTT-CGGACTTAGCCCGGAATTAGTAATCTCGCACAAATGCCTTCGGGACTTAGCCCG
*
68981767 GAATTAGTATCTCGCA
65 GAATTAGTAACTCGCA
* * *
68981783 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCAC-AA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGA-CTTAGCCCGGA-ATTAGTAATC-TCGCACAAATGCCTTCGGGACTTAGCC
68981844 CGGA
63 CGGA
68981848 CATCATTCAA
Statistics
Matches: 126, Mismatches: 8, Indels: 19
0.82 0.05 0.12
Matches are distributed among these distances:
77 3 0.02
78 43 0.34
79 57 0.45
80 22 0.17
81 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGACTTAGCCCGGAATTAGTAATCTCGCACAAATGCCTTCGGGACTTAGCCCGG
AATTAGTAACTCGCA
Found at i:68989712 original size:39 final size:39
Alignment explanation
Indices: 68989595--68989817 Score: 233
Period size: 39 Copynumber: 5.6 Consensus size: 39
68989585 GCTCCTCGTT
* * *
68989595 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCACA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
68989635 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
*
68989675 CAAATGCCTTCCGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
68989714 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
* * *
68989753 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATC-TCGCA
68989794 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
68989818 CATCATTCAA
Statistics
Matches: 162, Mismatches: 14, Indels: 15
0.85 0.07 0.08
Matches are distributed among these distances:
39 92 0.57
40 59 0.36
41 11 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:68989772 original size:79 final size:80
Alignment explanation
Indices: 68989595--68989817 Score: 248
Period size: 79 Copynumber: 2.8 Consensus size: 80
68989585 GCTCCTCGTT
* * * *
68989595 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCACACAAATGCCTTCGGGACTTAACCC
1 CAAATGCCTTC-GGACTTAGCCCGGAAT-TAGTAATCTCGCACAAATGCCTTCGGGACTTAGCCC
*
68989658 GGATTTAGTAACTCGCA
64 GGAATTAGTAACTCGCA
68989675 CAAATGCCTTCCGG-CTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCG
1 CAAATGCCTT-CGGACTTAGCCCGGAATTAGTAATCTCGCACAAATGCCTTCGGGACTTAGCCCG
*
68989737 GAATTAGTATCTCGCA
65 GAATTAGTAACTCGCA
* * *
68989753 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCAC-AA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGA-CTTAGCCCGGA-ATTAGTAATC-TCGCACAAATGCCTTCGGGACTTAGCC
68989814 CGGA
63 CGGA
68989818 CATCATTCAA
Statistics
Matches: 126, Mismatches: 8, Indels: 19
0.82 0.05 0.12
Matches are distributed among these distances:
77 3 0.02
78 43 0.34
79 57 0.45
80 22 0.17
81 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGACTTAGCCCGGAATTAGTAATCTCGCACAAATGCCTTCGGGACTTAGCCCGG
AATTAGTAACTCGCA
Found at i:69003266 original size:50 final size:50
Alignment explanation
Indices: 69003106--69003320 Score: 265
Period size: 50 Copynumber: 4.3 Consensus size: 50
69003096 NNNNNNNNNN
* * *
69003106 AAGTGCAGGCTACTACGTGTACCATACT-GTTAAGTCGCATGTGTAGTACT
1 AAGTGCAGGCTACTACGTGTACCAGA-TGGTTAGGTCACATGTGTAGTACT
* * * * *
69003156 AAGTGCAGGCTACTATGCGTACTCA-ATGACTTCGATCACATGTGTAGTACT
1 AAGTGCAGGCTACTACGTGTAC-CAGATG-GTTAGGTCACATGTGTAGTACT
* *
69003207 AAGTGCAGGCTACTACGTGTATCAGATGGTGAGGTCACATGTGTAGTACT
1 AAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTGTAGTACT
* **
69003257 AAGTGCAGGCTACTACGTGTACCGGATTATT-GGTCACATGTGTAGTACT
1 AAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTGTAGTACT
69003306 AAGTGCAGGCTACTA
1 AAGTGCAGGCTACTA
69003321 TGCATATCAG
Statistics
Matches: 142, Mismatches: 19, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
49 34 0.24
50 67 0.47
51 41 0.29
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (50 bp):
AAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTGTAGTACT
Found at i:69003329 original size:99 final size:101
Alignment explanation
Indices: 69003143--69003332 Score: 278
Period size: 99 Copynumber: 1.9 Consensus size: 101
69003133 TGTTAAGTCG
*
69003143 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACTTCGATCACATGTGTAGTACTA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGCGTACTCAATGACTTCGATCACATGTGTAGTACTA
**
69003208 AGTGCAGGCTACTACGTGTATCAGATGGTGAGGTCA
66 AGTGCAGGCTACTACGCATATCAGATGGTGAGGTCA
* * * *
69003244 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CGGATTA-TT-GGTCACATGTGTAGTACT
1 CATGTGTAGTACTAAGTGCAGGCTACTACGCGTACTC-AATGACTTCGATCACATGTGTAGTACT
*
69003306 AAGTGCAGGCTACTATGCATATCAGAT
65 AAGTGCAGGCTACTACGCATATCAGAT
69003333 AGCTTTGGCT
Statistics
Matches: 80, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
99 41 0.51
100 3 0.04
101 36 0.45
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (101 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACGCGTACTCAATGACTTCGATCACATGTGTAGTACTA
AGTGCAGGCTACTACGCATATCAGATGGTGAGGTCA
Found at i:69015559 original size:46 final size:45
Alignment explanation
Indices: 69015388--69015559 Score: 170
Period size: 46 Copynumber: 3.7 Consensus size: 45
69015378 CTCATAGCCT
69015388 ATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCAA-GGCCG
1 ATGCATGTCCCAGACATGTCTTACACTGGC-T-CGTCTCAATGGCCG
* * * * *
69015434 ATGCATGTCCTAGATACGTCTTACACTAGCACTCGTCTCAAT-GCTG
1 ATGCATGTCCCAGACATGTCTTACACT-G-GCTCGTCTCAATGGCCG
* * * *
69015480 ATACCGTGTCCCAGATATGGTCTTACACTGGCTC-TCATAATATGGCCG
1 AT-GCATGTCCCAGACAT-GTCTTACACTGGCTCGTC-TCA-ATGGCCG
69015528 ATGCATGTCCCAGACATGTCTTACACTGGCTC
1 ATGCATGTCCCAGACATGTCTTACACTGGCTC
69015560 ACACAAGTAA
Statistics
Matches: 103, Mismatches: 15, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
45 2 0.02
46 57 0.55
47 28 0.27
48 16 0.16
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (45 bp):
ATGCATGTCCCAGACATGTCTTACACTGGCTCGTCTCAATGGCCG
Found at i:69018966 original size:23 final size:25
Alignment explanation
Indices: 69018929--69018975 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 25
69018919 GGTGTGAAAA
69018929 TTTAATTTTTATAATTCTTT-GAATT
1 TTTAATTTTTATAATT-TTTAGAATT
69018954 TTTAA-TTTT-TAATTTTTAGAAT
1 TTTAATTTTTATAATTTTTAGAAT
69018976 CCAAATCAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
22 3 0.14
23 9 0.43
24 4 0.19
25 5 0.24
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.64
Consensus pattern (25 bp):
TTTAATTTTTATAATTTTTAGAATT
Found at i:69018969 original size:6 final size:7
Alignment explanation
Indices: 69018929--69018971 Score: 50
Period size: 7 Copynumber: 5.6 Consensus size: 7
69018919 GGTGTGAAAA
69018929 TTTAATTT
1 TTTAA-TT
69018937 TTATAATT
1 TT-TAATT
69018945 CTTTGAATT
1 -TTT-AATT
69018954 TTTAATT
1 TTTAATT
69018961 TTTAATT
1 TTTAATT
69018968 TTTA
1 TTTA
69018972 GAATCCAAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
7 15 0.47
8 8 0.25
9 9 0.28
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.67
Consensus pattern (7 bp):
TTTAATT
Found at i:69027968 original size:38 final size:38
Alignment explanation
Indices: 69027909--69028166 Score: 266
Period size: 38 Copynumber: 6.8 Consensus size: 38
69027899 CATTATTCGA
* * * * ** *
69027909 GCTCTGTTCCTAGTAGGCTTTGTGCTGGTGATATTTGA
1 GCTCTGTGCCTAGCAAGCTTCGTGCCAGTGATATTTGG
* * * **
69027947 GCCCTGTGCCTAGCAAGCTTTGTGTCAGTGATATTCAG
1 GCTCTGTGCCTAGCAAGCTTCGTGCCAGTGATATTTGG
* * * *
69027985 GCTCTGTGTCC-AGCAGGCTTCGTACCGGTGATATTCGG
1 GCTCTGTG-CCTAGCAAGCTTCGTGCCAGTGATATTTGG
*
69028023 GCTCTGTGCCTAGCAAGCTTCATGCCAGTGATATTTGG
1 GCTCTGTGCCTAGCAAGCTTCGTGCCAGTGATATTTGG
* * * *
69028061 GCTTTATGCCCAGCAAGCTTCGGGCCAGTGATATTTGG
1 GCTCTGTGCCTAGCAAGCTTCGTGCCAGTGATATTTGG
* ** * *
69028099 GCTCTGTGCCTAGCAGGCTTTTTGCCTGTTATATTTGG
1 GCTCTGTGCCTAGCAAGCTTCGTGCCAGTGATATTTGG
69028137 GCTCTGTGCCTAGCAAGCTTCGTGCCAGTG
1 GCTCTGTGCCTAGCAAGCTTCGTGCCAGTG
69028167 TTGTAACACC
Statistics
Matches: 177, Mismatches: 41, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
37 2 0.01
38 173 0.98
39 2 0.01
ACGTcount: A:0.15, C:0.23, G:0.28, T:0.33
Consensus pattern (38 bp):
GCTCTGTGCCTAGCAAGCTTCGTGCCAGTGATATTTGG
Found at i:69028102 original size:114 final size:114
Alignment explanation
Indices: 69027953--69028166 Score: 295
Period size: 114 Copynumber: 1.9 Consensus size: 114
69027943 TTGAGCCCTG
* * * *
69027953 TGCCTAGCAAGCTTTGTGTCAGTGATATTCAGGCTCTGTGTCC-AGCAGGCTTCGTACCGGTGAT
1 TGCCCAGCAAGCTTCGGGCCAGTGATATTCAGGCTCTGTG-CCTAGCAGGCTTCGTACCGGTGAT
69028017 ATTCGGGCTCTGTGCCTAGCAAGCTTCATGCCAGTGATATTTGGGCTTTA
65 ATTCGGGCTCTGTGCCTAGCAAGCTTCATGCCAGTGATATTTGGGCTTTA
** ** * * *
69028067 TGCCCAGCAAGCTTCGGGCCAGTGATATTTGGGCTCTGTGCCTAGCAGGCTTTTTGCCTGTTATA
1 TGCCCAGCAAGCTTCGGGCCAGTGATATTCAGGCTCTGTGCCTAGCAGGCTTCGTACCGGTGATA
* *
69028132 TTTGGGCTCTGTGCCTAGCAAGCTTCGTGCCAGTG
66 TTCGGGCTCTGTGCCTAGCAAGCTTCATGCCAGTG
69028167 TTGTAACACC
Statistics
Matches: 86, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
113 2 0.02
114 84 0.98
ACGTcount: A:0.16, C:0.24, G:0.28, T:0.32
Consensus pattern (114 bp):
TGCCCAGCAAGCTTCGGGCCAGTGATATTCAGGCTCTGTGCCTAGCAGGCTTCGTACCGGTGATA
TTCGGGCTCTGTGCCTAGCAAGCTTCATGCCAGTGATATTTGGGCTTTA
Found at i:69029947 original size:57 final size:57
Alignment explanation
Indices: 69029854--69030010 Score: 167
Period size: 57 Copynumber: 2.8 Consensus size: 57
69029844 ATCATATAGC
* * * *
69029854 AGGATTACCACTCCAAGCTAAATCTCGT-CTT-CAACATATGCTCACAAGAGCTTAATT
1 AGGATTACCAGTCCAAGCTAAATC-C-TAATTATAACATATGCTCACAAGAGCTCAATT
* * * * * *
69029911 AGGATTACTAGTCTAGGCTAAATCCT-TTCTATAACATATGTTCAGAAGAGCTCAATT
1 AGGATTACCAGTCCAAGCTAAATCCTAAT-TATAACATATGCTCACAAGAGCTCAATT
*
69029968 AGGATTACCAGTCCAAGCTAAATCCTAATTGTAACATATGCTC
1 AGGATTACCAGTCCAAGCTAAATCCTAATTATAACATATGCTC
69030011 GAGAGGGATT
Statistics
Matches: 82, Mismatches: 15, Indels: 6
0.80 0.15 0.06
Matches are distributed among these distances:
55 2 0.02
56 2 0.02
57 77 0.94
58 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.30
Consensus pattern (57 bp):
AGGATTACCAGTCCAAGCTAAATCCTAATTATAACATATGCTCACAAGAGCTCAATT
Found at i:69031738 original size:48 final size:48
Alignment explanation
Indices: 69031667--69031954 Score: 362
Period size: 48 Copynumber: 6.0 Consensus size: 48
69031657 ACCGTGCTAA
* * * *
69031667 ATGTGCCTATGTAAGACCATGTCTGGGATATGGTATCAGCAATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATAT
* * *
69031715 ATGTGCCTGTATAAGGCCATGTCTGGGACATGGCATCGGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATAT
* * *
69031763 ATGTGCATGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATAT
* * *
69031811 ATGTGCTTGTGTAAGACCATGTCTGGGACATGACAT-AGGCAATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCA-GCGATGATAT
* * * *
69031859 GTGTGCCAGTGTAAGACCATGTTTGGGACATGGCATCAACGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATAT
* * * * *
69031907 GTGTGCCAGTGTAAGACCATGTTTGGGACATGACATCAGTGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATAT
69031955 GTGAATTCAT
Statistics
Matches: 212, Mismatches: 26, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
48 211 1.00
49 1 0.00
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (48 bp):
ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATAT
Found at i:69031927 original size:144 final size:144
Alignment explanation
Indices: 69031667--69031954 Score: 400
Period size: 144 Copynumber: 2.0 Consensus size: 144
69031657 ACCGTGCTAA
* ** * *
69031667 ATGTGCCTATGTAAGACCATGTCTGGGATATGGTATCAGCAATGATATATGTGCCTGTATAAGGC
1 ATGTGCCTATGTAAGACCATGTCTGGGACATGACATCAGCAATGATATATGTGCCAGTATAAGAC
** *
69031732 CATGTCTGGGACATGGCATCGGCGATGATATATGTGCATGTGTAAGACCATGTCTGGGACATGGC
66 CATGTCTGGGACATGGCATCAACGATGATATATGTGCATGTGTAAGACCATGTCTGGGACATGAC
*
69031797 ATCGGTGATGATAT
131 ATCAGTGATGATAT
* * * *
69031811 ATGTGCTTGTGTAAGACCATGTCTGGGACATGACAT-AGGCAATGATATGTGTGCCAGTGTAAGA
1 ATGTGCCTATGTAAGACCATGTCTGGGACATGACATCA-GCAATGATATATGTGCCAGTATAAGA
* * *
69031875 CCATGTTTGGGACATGGCATCAACGATGATATGTGTGCCA-GTGTAAGACCATGTTTGGGACATG
65 CCATGTCTGGGACATGGCATCAACGATGATATATGTG-CATGTGTAAGACCATGTCTGGGACATG
69031939 ACATCAGTGATGATAT
129 ACATCAGTGATGATAT
69031955 GTGAATTCAT
Statistics
Matches: 126, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
143 1 0.01
144 123 0.98
145 2 0.02
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (144 bp):
ATGTGCCTATGTAAGACCATGTCTGGGACATGACATCAGCAATGATATATGTGCCAGTATAAGAC
CATGTCTGGGACATGGCATCAACGATGATATATGTGCATGTGTAAGACCATGTCTGGGACATGAC
ATCAGTGATGATAT
Found at i:69031968 original size:96 final size:94
Alignment explanation
Indices: 69031675--69031990 Score: 341
Period size: 96 Copynumber: 3.3 Consensus size: 94
69031665 AAATGTGCCT
* * * * *
69031675 ATGTAAGACCATGTCTGGGATATGGTATCAGCAATGATATATGTGCCTGTATAAGGCCATGTCTG
1 ATGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATATGTGCCTGTGTAAGACCATGTCTG
* * * *
69031740 GGACATGGCATCGGCGATGATATATG-TGC
66 GGACATGACATCAG-GATGATATGTGATTC
* * *
69031769 ATGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATATGTGCTTGTGTAAGACCATGTC
1 A--TGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATATGTGCCTGTGTAAGACCATGTC
*
69031834 TGGGACATGACAT-AGGCAATGATATGTG-TGCC
64 TGGGACATGACATCAGG--ATGATATGTGAT-TC
* * * * *
69031866 AGTGTAAGACCATGTTTGGGACATGGCATCAACGATGATATGTGTGCCAGTGTAAGACCATGTTT
1 A-TGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATATGTGCCTGTGTAAGACCATGTCT
69031931 GGGACATGACATCAGTGATGATATGTGAATTC
65 GGGACATGACATCAG-GATGATATGTG-ATTC
* * *
69031963 ATGTAAGATCATGTCAGAGACATGGCAT
1 ATGTAAGACCATGTCTGGGACATGGCAT
69031991 TGGTATTTTA
Statistics
Matches: 188, Mismatches: 25, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
94 2 0.01
95 1 0.01
96 177 0.94
97 6 0.03
98 2 0.01
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (94 bp):
ATGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATATGTGCCTGTGTAAGACCATGTCTG
GGACATGACATCAGGATGATATGTGATTC
Found at i:69031968 original size:144 final size:143
Alignment explanation
Indices: 69031674--69031986 Score: 389
Period size: 144 Copynumber: 2.2 Consensus size: 143
69031664 TAAATGTGCC
* ** * *
69031674 TATGTAAGACCATGTCTGGGATATGGTATCAGCAATGATATATGTGCCTGTATAAGGCCATGTCT
1 TATGTAAGACCATGTCTGGGACATGACATCAGCAATGATATATGTGCCAGTATAAGACCATGTCT
** * *
69031739 GGGACATGGCATCGGCGATGATATATGTGCATGTGTAAGACCATGTCTGGGACATGGCATCGGTG
66 GGGACATGGCATCAACGATGATATATGTGCATGTGTAAGACCATGTCTGGGACATGACATCAGTG
*
69031804 ATGATATATGTGCT
131 ATGA-ATATGTGAT
* * * *
69031818 TGTGTAAGACCATGTCTGGGACATGACAT-AGGCAATGATATGTGTGCCAGTGTAAGACCATGTT
1 TATGTAAGACCATGTCTGGGACATGACATCA-GCAATGATATATGTGCCAGTATAAGACCATGTC
* *
69031882 TGGGACATGGCATCAACGATGATATGTGTGCCA-GTGTAAGACCATGTTTGGGACATGACATCAG
65 TGGGACATGGCATCAACGATGATATATGTG-CATGTGTAAGACCATGTCTGGGACATGACATCAG
69031946 TGATG-ATATGTGAAT
129 TGATGAATATGTG-AT
* * *
69031961 TCATGTAAGATCATGTCAGAGACATG
1 T-ATGTAAGACCATGTCTGGGACATG
69031987 GCATTGGTAT
Statistics
Matches: 145, Mismatches: 20, Indels: 8
0.84 0.12 0.05
Matches are distributed among these distances:
142 7 0.05
143 3 0.02
144 133 0.92
145 2 0.01
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (143 bp):
TATGTAAGACCATGTCTGGGACATGACATCAGCAATGATATATGTGCCAGTATAAGACCATGTCT
GGGACATGGCATCAACGATGATATATGTGCATGTGTAAGACCATGTCTGGGACATGACATCAGTG
ATGAATATGTGAT
Found at i:69033659 original size:15 final size:17
Alignment explanation
Indices: 69033633--69033666 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
69033623 TATTTAATTA
69033633 TTTATCATCTTTT-AAT
1 TTTATCATCTTTTCAAT
69033649 TTTATCA-CTTTTCAAT
1 TTTATCATCTTTTCAAT
69033665 TT
1 TT
69033667 GTCCTTACCC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.24, C:0.15, G:0.00, T:0.62
Consensus pattern (17 bp):
TTTATCATCTTTTCAAT
Found at i:69035968 original size:19 final size:19
Alignment explanation
Indices: 69035944--69035984 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
69035934 TTGAAGAGTA
69035944 TAATTGAAGTAGAGGTCCT
1 TAATTGAAGTAGAGGTCCT
69035963 TAATTGAAGTAGAGGTCCT
1 TAATTGAAGTAGAGGTCCT
69035982 TAA
1 TAA
69035985 ATGGACATAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.34, C:0.10, G:0.24, T:0.32
Consensus pattern (19 bp):
TAATTGAAGTAGAGGTCCT
Found at i:69037122 original size:53 final size:53
Alignment explanation
Indices: 69037004--69037123 Score: 127
Period size: 53 Copynumber: 2.3 Consensus size: 53
69036994 AAACTACTAT
* * * * *
69037004 AAGGCAAAGATCCCATGTAAGACCATGCCAAGGCATAGCAATGGTTAATTCAT
1 AAGGCAAAGATACCACGTAAGACCATGCCAAGACATAGCAATGGTTAATTAAA
* ** *
69037057 AAGGCAAGGATACCACGTAAGACCATGTTAAGACATGGCAATGG-TAAGTTTAAA
1 AAGGCAAAGATACCACGTAAGACCATGCCAAGACATAGCAATGGTTAA--TTAAA
69037111 AAGG-AAAGATACC
1 AAGGCAAAGATACC
69037124 CATGTATCCT
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
52 3 0.05
53 45 0.82
54 7 0.13
ACGTcount: A:0.41, C:0.17, G:0.23, T:0.19
Consensus pattern (53 bp):
AAGGCAAAGATACCACGTAAGACCATGCCAAGACATAGCAATGGTTAATTAAA
Found at i:69042970 original size:40 final size:40
Alignment explanation
Indices: 69042907--69043109 Score: 191
Period size: 40 Copynumber: 5.1 Consensus size: 40
69042897 CGGAATTTAA
* * ** * *
69042907 CCGGATATAGCAACTCGTTCAAATGCCTTTGGGACATAGC
1 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
69042947 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
69042987 CCAGATT-TAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CC-GGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
69043026 CCGG-AATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGTTA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
** * * *
69043066 CCGGAAATAGTCACTTAGCACAAA-GCCTTCGCGACTTAGC
1 CCGGTTATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
69043106 CCGG
1 CCGG
69043110 ACATCATTCG
Statistics
Matches: 137, Mismatches: 18, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
38 3 0.02
39 29 0.21
40 90 0.66
41 15 0.11
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:69043094 original size:79 final size:80
Alignment explanation
Indices: 69042954--69043110 Score: 194
Period size: 79 Copynumber: 2.0 Consensus size: 80
69042944 AGCCCGGTTA
** * *
69042954 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCACCAATGCCTTCG-
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAGAAATAGTAACTAGCACCAAAGCCTTCGC
*
69043018 GGCTTAGCCCGGAAT
66 GACTTAGCCCGGAAT
** * *
69043033 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGAAATAGTCACTTAGCA-CAAAGCCTTC
1 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCAGAAATAGTAAC-TAGCACCAAAGCCTTC
69043096 GCGACTTAGCCCGGA
64 GCGACTTAGCCCGGA
69043111 CATCATTCGA
Statistics
Matches: 66, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
78 3 0.05
79 47 0.71
80 16 0.24
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAGAAATAGTAACTAGCACCAAAGCCTTCGC
GACTTAGCCCGGAAT
Found at i:69050395 original size:55 final size:53
Alignment explanation
Indices: 69050328--69050464 Score: 159
Period size: 55 Copynumber: 2.6 Consensus size: 53
69050318 GCAAGGAAAT
* *
69050328 CATGTAAGACCATGTCAAGACATGACATTGATAAGCTACTATAAGACAAAGATCC
1 CATGTAAGACCATGTCAAGACATGACAATGATAAG-TAC-ATAAGACAAAGATAC
* * * * * * *
69050383 CATGTAAGACCATGCCAAGGCATGACAATGGTGAGTTCATAAGGCAATGATAC
1 CATGTAAGACCATGTCAAGACATGACAATGATAAGTACATAAGACAAAGATAC
*
69050436 CA-GTAAGACCATGTCAAGACACGACAATG
1 CATGTAAGACCATGTCAAGACATGACAATG
69050465 GTTAGTTTAA
Statistics
Matches: 70, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
52 24 0.34
53 14 0.20
54 2 0.03
55 30 0.43
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.20
Consensus pattern (53 bp):
CATGTAAGACCATGTCAAGACATGACAATGATAAGTACATAAGACAAAGATAC
Found at i:69050462 original size:52 final size:54
Alignment explanation
Indices: 69050328--69050471 Score: 166
Period size: 52 Copynumber: 2.7 Consensus size: 54
69050318 GCAAGGAAAT
* * * *
69050328 CATGTAAGACCATGTCAAGACATGACATTGATAAGCTACTATAAGACAAAGATCC
1 CATGTAAGACCATGTCAAGACATGACAATGGTAAG-TTCTATAAGACAAAGATAC
* * * * *
69050383 CATGTAAGACCATGCCAAGGCATGACAATGGTGAGTTC-ATAAGGCAATGATAC
1 CATGTAAGACCATGTCAAGACATGACAATGGTAAGTTCTATAAGACAAAGATAC
* *
69050436 CA-GTAAGACCATGTCAAGACACGACAATGGTTAGTT
1 CATGTAAGACCATGTCAAGACATGACAATGGTAAGTT
69050472 TAAAAAGGAA
Statistics
Matches: 76, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
52 30 0.39
53 14 0.18
54 2 0.03
55 30 0.39
ACGTcount: A:0.38, C:0.19, G:0.21, T:0.22
Consensus pattern (54 bp):
CATGTAAGACCATGTCAAGACATGACAATGGTAAGTTCTATAAGACAAAGATAC
Found at i:69054688 original size:43 final size:43
Alignment explanation
Indices: 69054631--69054751 Score: 149
Period size: 43 Copynumber: 2.8 Consensus size: 43
69054621 AATGCTAATG
* * *
69054631 TCCCAGACGTGGTCTTACATGTA-ATCACATATCGATGCC-ACTG
1 TCCCAAACGTGGTCTTACATG-AGAACACATATCGATGCCAAC-A
*
69054674 TCCCAAACAG-GGTCTTACACGAGAACACATATCGATGCCAACA
1 TCCCAAAC-GTGGTCTTACATGAGAACACATATCGATGCCAACA
*
69054717 TCCCAAGCGTGGTCTTACATGAGAACACATATCGA
1 TCCCAAACGTGGTCTTACATGAGAACACATATCGA
69054752 AAATCCTATG
Statistics
Matches: 68, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
42 2 0.03
43 63 0.93
44 3 0.04
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.22
Consensus pattern (43 bp):
TCCCAAACGTGGTCTTACATGAGAACACATATCGATGCCAACA
Found at i:69062594 original size:28 final size:29
Alignment explanation
Indices: 69062525--69062597 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 29
69062515 AATGTTTTTA
69062525 GGCCTAATGGGCCATACGAATGTGATTTG
1 GGCCTAATGGGCCATACGAATGTGATTTG
* *
69062554 GGCCTAATAGGCCATAGGAA--TGATATTG
1 GGCCTAATGGGCCATACGAATGTGAT-TTG
* *
69062582 GGCTTAGTGGGCCATA
1 GGCCTAATGGGCCATA
69062598 TGCATGTATG
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
27 4 0.11
28 16 0.42
29 18 0.47
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
GGCCTAATGGGCCATACGAATGTGATTTG
Found at i:69070289 original size:29 final size:29
Alignment explanation
Indices: 69070222--69070296 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 29
69070212 GTATGACTAT
* *
69070222 GAATGTGATTTGGGCCTAATGGGCCATAC
1 GAATGAGATTTGGGCCTAATGGGCCAAAC
* *
69070251 GAATGTGATTTGGGCCTAATGGGCCAAAG
1 GAATGAGATTTGGGCCTAATGGGCCAAAC
*
69070280 GTATGAGA-TTGGGCCTA
1 GAATGAGATTTGGGCCTA
69070297 GTAGGTCATA
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
28 9 0.21
29 33 0.79
ACGTcount: A:0.25, C:0.15, G:0.33, T:0.27
Consensus pattern (29 bp):
GAATGAGATTTGGGCCTAATGGGCCAAAC
Found at i:69071445 original size:20 final size:19
Alignment explanation
Indices: 69071401--69071449 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
69071391 CAAAGTAATT
* *
69071401 AAGGTTTTTCATTGTGAGG
1 AAGGTTTTTCATTCTAAGG
69071420 AAGGTTTTTCATTCTAAGG
1 AAGGTTTTTCATTCTAAGG
*
69071439 AAGGGTTTTCA
1 AAGGTTTTTCA
69071450 ATGAAAACAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.24, C:0.08, G:0.27, T:0.41
Consensus pattern (19 bp):
AAGGTTTTTCATTCTAAGG
Found at i:69074376 original size:46 final size:46
Alignment explanation
Indices: 69074324--69074596 Score: 372
Period size: 46 Copynumber: 6.0 Consensus size: 46
69074314 AGTGTGCTCT
**
69074324 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
**
69074370 CTGATATGAAATGTGTAAGACCAT-GTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
69074415 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
69074461 ATGAT-GGAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
* *
69074507 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
69074553 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCA
69074597 TCATGTCAAA
Statistics
Matches: 209, Mismatches: 14, Indels: 8
0.90 0.06 0.03
Matches are distributed among these distances:
45 45 0.22
46 163 0.78
47 1 0.00
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.21
Consensus pattern (46 bp):
CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:69074615 original size:137 final size:137
Alignment explanation
Indices: 69074339--69074619 Score: 388
Period size: 137 Copynumber: 2.1 Consensus size: 137
69074329 ATGAAATGTG
* **
69074339 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGTTGAAAGAT
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAATAAGACCATGTTGAAAGAT
* * * * *
69074404 ACCATGGCAACCTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGATGGA
66 ACCATGGCAACATGACATGAAATGAATAAGACCATAGTTGAAAGACACCATGGCAACATGATGCA
*
69074469 AAATGAA
131 AAATAAA
* *
69074476 TAAGACCATGGTTGAAAGATACCATGGCAGCGTGACATGAAATGAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAATAAGACCAT-GTTGAAAGA
* * *
69074541 TACCATGGCAACATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG-T-
65 TACCATGGCAACATGACATG-AAATGAATAAGACCATAGTTGAAAGACACCATGGCAACATGATG
69074603 CAAAGATAAA
129 CAAA-ATAAA
69074613 TAAGACC
1 TAAGACC
69074620 GTGGATGGGA
Statistics
Matches: 127, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
136 3 0.02
137 63 0.50
138 61 0.48
ACGTcount: A:0.42, C:0.15, G:0.22, T:0.21
Consensus pattern (137 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAATAAGACCATGTTGAAAGAT
ACCATGGCAACATGACATGAAATGAATAAGACCATAGTTGAAAGACACCATGGCAACATGATGCA
AAATAAA
Found at i:69074901 original size:16 final size:17
Alignment explanation
Indices: 69074882--69074914 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
69074872 ATGATGGTGC
69074882 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
69074898 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
69074915 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:69076748 original size:43 final size:42
Alignment explanation
Indices: 69076693--69076820 Score: 125
Period size: 43 Copynumber: 3.0 Consensus size: 42
69076683 ATATTGTATA
* * * *
69076693 ATGCCAACGTCCCAGACATGGTTTTACATGTA-ATCACATATCG
1 ATGCC-ACGTCCCAGACAGGGTCTTACACG-AGAACACATATCG
69076736 ATGCCACTGTCCCAGACAGGGTCTTACACGAGAACACATATCG
1 ATGCCAC-GTCCCAGACAGGGTCTTACACGAGAACACATATCG
* * * *
69076779 ATGCCAACATCCCAGAC-GTCGTCTTACATGAGAAAACATATC
1 ATGCC-ACGTCCCAGACAG-GGTCTTACACGAGAACACATATC
69076821 AAAAATCCTA
Statistics
Matches: 73, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
42 4 0.05
43 67 0.92
44 2 0.03
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (42 bp):
ATGCCACGTCCCAGACAGGGTCTTACACGAGAACACATATCG
Found at i:69079787 original size:48 final size:50
Alignment explanation
Indices: 69079678--69079800 Score: 153
Period size: 48 Copynumber: 2.5 Consensus size: 50
69079668 CTAAATGTTC
* * * ** *
69079678 ATATCATGGCTCGAGGCCAACTCAATGTATCTCACACTCCAGAAGTGCTA
1 ATATCATGGCCCGAAGCCAAATCAATAAAGCTCACACTCCAGAAGTGCTA
*
69079728 ATATCATGGCCCGAAGCCAAATCAATAAAGCTCGCAC-CC-GAAGTGC-A
1 ATATCATGGCCCGAAGCCAAATCAATAAAGCTCACACTCCAGAAGTGCTA
69079775 GATATCATGGCCCGAAGCCAAATCAA
1 -ATATCATGGCCCGAAGCCAAATCAA
69079801 AGTATCCTCT
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
47 1 0.02
48 32 0.49
49 2 0.03
50 30 0.46
ACGTcount: A:0.34, C:0.28, G:0.19, T:0.19
Consensus pattern (50 bp):
ATATCATGGCCCGAAGCCAAATCAATAAAGCTCACACTCCAGAAGTGCTA
Found at i:69085689 original size:46 final size:46
Alignment explanation
Indices: 69085566--69085690 Score: 196
Period size: 46 Copynumber: 2.7 Consensus size: 46
69085556 GGTTGAGCAT
* * *
69085566 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTAATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
69085612 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
69085658 CCGAGCTCATTGAATTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
69085691 GGGGCGGGTT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:69089282 original size:43 final size:41
Alignment explanation
Indices: 69089232--69089336 Score: 111
Period size: 42 Copynumber: 2.5 Consensus size: 41
69089222 ATATCCAAAA
**
69089232 TATGGTCTTACATGTAATCTTGTATCAATGCCAATAGCCCAGC
1 TATGGTCTTACA-GTAATCTCATATCAATGCC-ATAGCCCAGC
* ** * *
69089275 TATGGTCTTACACTAAGTCTCATATTGATGCCATATCCCAGG
1 TATGGTCTTACAGTAA-TCTCATATCAATGCCATAGCCCAGC
69089317 TATGGTCTTACACGTAATCT
1 TATGGTCTTACA-GTAATCT
69089337 AAGTAACCCT
Statistics
Matches: 52, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
42 26 0.50
43 26 0.50
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.34
Consensus pattern (41 bp):
TATGGTCTTACAGTAATCTCATATCAATGCCATAGCCCAGC
Found at i:69100728 original size:12 final size:12
Alignment explanation
Indices: 69100711--69100735 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
69100701 AATATGTTAT
69100711 TATAATAAAACA
1 TATAATAAAACA
69100723 TATAATAAAACA
1 TATAATAAAACA
69100735 T
1 T
69100736 CATGCATTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (12 bp):
TATAATAAAACA
Found at i:69101711 original size:56 final size:55
Alignment explanation
Indices: 69101631--69101750 Score: 177
Period size: 56 Copynumber: 2.2 Consensus size: 55
69101621 CTTAGCATCA
* *
69101631 ATATATGTGTGCAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATTCTG
1 ATATATGTGTGCAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCCG
* * *
69101686 ATATATGTGTGCGAGTAAGATCACGTTTAATACGTTGTCATCTATATGTGATTCCG
1 ATATATGTGTGC-AGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCCG
*
69101742 GTATATGTG
1 ATATATGTG
69101751 ATTACATGTA
Statistics
Matches: 58, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
55 12 0.21
56 46 0.79
ACGTcount: A:0.27, C:0.12, G:0.23, T:0.38
Consensus pattern (55 bp):
ATATATGTGTGCAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCCG
Found at i:69108795 original size:27 final size:26
Alignment explanation
Indices: 69108721--69108971 Score: 109
Period size: 27 Copynumber: 9.3 Consensus size: 26
69108711 CAAAATAGTC
* * * *
69108721 ATTTTACCCTACAGGGGTATGTCGGTC
1 ATTTTACACTACAAGGGTATTTC-GTA
*
69108748 ATTTCACACTACAAGGGTATTTCAGTA
1 ATTTTACACTACAAGGGTATTTC-GTA
69108775 ATTTTACACTACAAGGGTATTTCGATA
1 ATTTTACACTACAAGGGTATTTCG-TA
* *** * *
69108802 ATTTTACA-AATTGGGGGTGTTTTGGTA
1 ATTTTACACTA-CAAGGGT-ATTTCGTA
* **
69108829 ATTTTACA-AATTGAGGGTATTTCGGTA
1 ATTTTACACTA-CAAGGGTATTTC-GTA
* *
69108856 ATTTTACA-AATTAAGGGTATTTCGGTA
1 ATTTTACACTA-CAAGGGTATTTC-GTA
* **
69108883 ATTTTACAAATTGAA-GGTATTTCGGTA
1 ATTTTAC-ACTACAAGGGTATTTC-GTA
* *
69108910 ATTTTACA-AATCGAGGGTATTTCGATA
1 ATTTTACACTA-CAAGGGTATTTCG-TA
* * *
69108937 ATTTTACA-AATCAAGGGTGTTTTGATA
1 ATTTTACACTA-CAAGGGTATTTCG-TA
69108964 ATTTTACA
1 ATTTTACA
69108972 AATCGAGGGT
Statistics
Matches: 188, Mismatches: 27, Indels: 18
0.81 0.12 0.08
Matches are distributed among these distances:
26 8 0.04
27 173 0.92
28 7 0.04
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (26 bp):
ATTTTACACTACAAGGGTATTTCGTA
Found at i:69108972 original size:27 final size:27
Alignment explanation
Indices: 69108761--69109101 Score: 370
Period size: 27 Copynumber: 12.7 Consensus size: 27
69108751 TCACACTACA
* *
69108761 AGGGTATTTC-AGTAATTTTAC-ACTACA
1 AGGGTATTTCGA-TAATTTTACAAAT-CG
*
69108788 AGGGTATTTCGATAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* * * * *
69108815 GGGGTGTTTTGGTAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* **
69108842 AGGGTATTTCGGTAATTTTACAAATTA
1 AGGGTATTTCGATAATTTTACAAATCG
* *
69108869 AGGGTATTTCGGTAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
69108896 AAGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
69108923 AGGGTATTTCGATAATTTTACAAATCA
1 AGGGTATTTCGATAATTTTACAAATCG
* *
69108950 AGGGTGTTTTGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
69108977 AGGGTGTTTCGATAATTTCACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
69109004 AGAGTATTTCAATAACTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
69109031 -GAGGTATTTCGATAATTTCAC-AATCG
1 AG-GGTATTTCGATAATTTTACAAATCG
*
69109057 AAGGTATGTT-GATAATTTTACAAATCG
1 AGGGTAT-TTCGATAATTTTACAAATCG
69109084 AGGGTATTTC-AGTAATTT
1 AGGGTATTTCGA-TAATTT
69109102 CTCTTTATTA
Statistics
Matches: 272, Mismatches: 34, Indels: 16
0.84 0.11 0.05
Matches are distributed among these distances:
26 24 0.09
27 245 0.90
28 3 0.01
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:69109471 original size:27 final size:28
Alignment explanation
Indices: 69109417--69109472 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
69109407 TCGCCCCTTT
* *
69109417 AGGCCCAATCTCGTTCACATGGCCCATC
1 AGGCCCAATCACATTCACATGGCCCATC
*
69109445 AGGCCCAATCACATTC-TATGGCCCATC
1 AGGCCCAATCACATTCACATGGCCCATC
69109472 A
1 A
69109473 TGTAACACCC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
27 11 0.44
28 14 0.56
ACGTcount: A:0.25, C:0.38, G:0.16, T:0.21
Consensus pattern (28 bp):
AGGCCCAATCACATTCACATGGCCCATC
Found at i:69109552 original size:17 final size:18
Alignment explanation
Indices: 69109530--69109563 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
69109520 TTACATTGAA
69109530 GTGTTTT-AGTGAAAACT
1 GTGTTTTCAGTGAAAACT
*
69109547 GTGTTTTCATTGAAAAC
1 GTGTTTTCAGTGAAAAC
69109564 CCTTCTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (18 bp):
GTGTTTTCAGTGAAAACT
Found at i:69110677 original size:29 final size:29
Alignment explanation
Indices: 69110636--69110752 Score: 144
Period size: 29 Copynumber: 4.0 Consensus size: 29
69110626 TGGCCCATCT
* *
69110636 CATTCATATGGCCCATCAGGCCCAATTCA
1 CATTCATATGGCCTATTAGGCCCAATTCA
69110665 CATTCATATGGCCTATTAGGCCCAATTCA
1 CATTCATATGGCCTATTAGGCCCAATTCA
* **
69110694 TATTCATATGGCCTATTAGGCCCAAAGCA
1 CATTCATATGGCCTATTAGGCCCAATTCA
* * * * *
69110723 CCTTTATATGGCCTGTTAGGTCCAAATCA
1 CATTCATATGGCCTATTAGGCCCAATTCA
69110752 C
1 C
69110753 CTTATATTCA
Statistics
Matches: 77, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 77 1.00
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.29
Consensus pattern (29 bp):
CATTCATATGGCCTATTAGGCCCAATTCA
Found at i:69115088 original size:27 final size:28
Alignment explanation
Indices: 69115052--69115346 Score: 262
Period size: 27 Copynumber: 11.0 Consensus size: 28
69115042 TTTAACTACA
* *
69115052 AGGGTATTTTGAG-AATTTTACAAATCG
1 AGGGTGTTTTCAGTAATTTTACAAATCG
* * * *
69115079 GGGGTGTTTT-GGTAATAATTACAAATCA
1 AGGGTGTTTTCAGTAAT-TTTACAAATCG
* * *
69115107 AGGGTATTTT-GGTAATTTTACAAATTG
1 AGGGTGTTTTCAGTAATTTTACAAATCG
* *
69115134 AGGGT-ATTTCAATAATTTTACAAATCG
1 AGGGTGTTTTCAGTAATTTTACAAATCG
69115161 AGGGTG-TTTC-GATAATTTTACAAATCG
1 AGGGTGTTTTCAG-TAATTTTACAAATCG
69115188 AGGGTG-TTTCAGTAATTTTACAAATCG
1 AGGGTGTTTTCAGTAATTTTACAAATCG
69115215 AGGGTG-TTTCAGTAATTTTACAAATCG
1 AGGGTGTTTTCAGTAATTTTACAAATCG
* * *
69115242 AGGGTG-TTTCAGTGATTTCACAAATCA
1 AGGGTGTTTTCAGTAATTTTACAAATCG
* *
69115269 AGGGTATTTTCA-TAATTTTTCAAATCG
1 AGGGTGTTTTCAGTAATTTTACAAATCG
* * *
69115296 -GGG-GCATTTCAGTAATTTCAC-AATTG
1 AGGGTG-TTTTCAGTAATTTTACAAATCG
*
69115322 AGGGT-ATTTC-GATAA-TTTACAAATC
1 AGGGTGTTTTCAG-TAATTTTACAAATC
69115347 AAGCGCATTT
Statistics
Matches: 225, Mismatches: 30, Indels: 27
0.80 0.11 0.10
Matches are distributed among these distances:
25 5 0.02
26 27 0.12
27 164 0.73
28 29 0.13
ACGTcount: A:0.31, C:0.11, G:0.21, T:0.38
Consensus pattern (28 bp):
AGGGTGTTTTCAGTAATTTTACAAATCG
Found at i:69115177 original size:54 final size:54
Alignment explanation
Indices: 69115052--69115365 Score: 321
Period size: 54 Copynumber: 5.8 Consensus size: 54
69115042 TTTAACTACA
* * * * ** * *
69115052 AGGGTATTTTGAGAATTTTACAAATCGGGGGTGTTTTGGTAATAATTACAAATCA
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAAT-TTTACAAATCG
* * * *
69115107 AGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCG
* *
69115161 AGGGTGTTTCGATAATTTTACAAATCGAGGGTGTTTCAGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCG
* * * * *
69115215 AGGGTGTTTC-AGTAATTTTACAAATCGAGGGTGTTTCAGTGATTTCACAAATCA
1 AGGGTATTTCGA-TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCG
* * * * *
69115269 AGGGTATTTTC-ATAATTTTTCAAATCGGGGGCATTTCAGTAATTTCAC-AATTG
1 AGGGTA-TTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCG
* * * *
69115322 AGGGTATTTCGATAA-TTTACAAATCAAGCGCATTTCAATAATTT
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTT
69115366 CTCTTTATTA
Statistics
Matches: 224, Mismatches: 32, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
52 28 0.12
53 14 0.06
54 142 0.63
55 40 0.18
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.38
Consensus pattern (54 bp):
AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCG
Found at i:69115192 original size:81 final size:81
Alignment explanation
Indices: 69115052--69115349 Score: 345
Period size: 81 Copynumber: 3.7 Consensus size: 81
69115042 TTTAACTACA
* * * * *
69115052 AGGGTATTTTGAG-AATTTTACAAATCGGGGGTGTTTTGGTAATAATTACAAATCAAGGGTATTT
1 AGGGTA-TTTCAGTAATTTTACAAATCGAGGGTGTTTCGATAAT-TTTACAAATCAAGGGTATTT
* *
69115116 TGGTAATTTTACAAATTG
64 TAGTAATTTTACAAATCG
* * * *
69115134 AGGGTATTTCAATAATTTTACAAATCGAGGGTGTTTCGATAATTTTACAAATCGAGGGTGTTTCA
1 AGGGTATTTCAGTAATTTTACAAATCGAGGGTGTTTCGATAATTTTACAAATCAAGGGTATTTTA
69115199 GTAATTTTACAAATCG
66 GTAATTTTACAAATCG
* * *
69115215 AGGGTGTTTCAGTAATTTTACAAATCGAGGGTGTTTC-AGTGATTTCACAAATCAAGGGTATTTT
1 AGGGTATTTCAGTAATTTTACAAATCGAGGGTGTTTCGA-TAATTTTACAAATCAAGGGTATTTT
*
69115279 CA-TAATTTTTCAAATCG
65 -AGTAATTTTACAAATCG
* * * * *
69115296 GGGGCATTTCAGTAATTTCAC-AATTGAGGGTATTTCGATAA-TTTACAAATCAAG
1 AGGGTATTTCAGTAATTTTACAAATCGAGGGTGTTTCGATAATTTTACAAATCAAG
69115350 CGCATTTCAA
Statistics
Matches: 185, Mismatches: 27, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
79 12 0.06
80 16 0.09
81 123 0.66
82 34 0.18
ACGTcount: A:0.32, C:0.10, G:0.21, T:0.37
Consensus pattern (81 bp):
AGGGTATTTCAGTAATTTTACAAATCGAGGGTGTTTCGATAATTTTACAAATCAAGGGTATTTTA
GTAATTTTACAAATCG
Found at i:69117630 original size:20 final size:20
Alignment explanation
Indices: 69117597--69117671 Score: 102
Period size: 20 Copynumber: 3.9 Consensus size: 20
69117587 ATACGTGGGA
69117597 TATGATAT--ACATGAT-TG
1 TATGATATGCACATGATATG
*
69117614 ATATGATATGAACATGATATG
1 -TATGATATGCACATGATATG
69117635 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
*
69117655 TATGAAATGCACATGAT
1 TATGATATGCACATGAT
69117672 GTAATCATAA
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
18 8 0.15
20 42 0.81
21 2 0.04
ACGTcount: A:0.39, C:0.08, G:0.19, T:0.35
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:69117632 original size:11 final size:10
Alignment explanation
Indices: 69117598--69117654 Score: 57
Period size: 9 Copynumber: 5.8 Consensus size: 10
69117588 TACGTGGGAT
69117598 ATGATAT-AC
1 ATGATATGAC
*
69117607 ATGAT-TGAT
1 ATGATATGAC
69117616 ATGATATGAAC
1 ATGATATG-AC
*
69117627 ATGATATG-T
1 ATGATATGAC
69117636 ATGATATGCAC
1 ATGATATG-AC
69117647 ATGATATG
1 ATGATATG
69117655 TATGAAATGC
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
8 1 0.03
9 19 0.49
10 2 0.05
11 17 0.44
ACGTcount: A:0.39, C:0.07, G:0.19, T:0.35
Consensus pattern (10 bp):
ATGATATGAC
Found at i:69117770 original size:26 final size:26
Alignment explanation
Indices: 69117721--69117831 Score: 165
Period size: 26 Copynumber: 4.4 Consensus size: 26
69117711 GAGGAAGTGC
*
69117721 AAAAGGGC-TATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
69117746 AAAAGGGCTTATGCCCCAGTCTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
69117772 AAAAGAGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
69117798 AAAAGGGCTT-TGCCCCAGTTTA-TC
1 AAAAGGGCTTATGCCCCAGTTTATTG
69117822 AAAAGGGCTT
1 AAAAGGGCTT
69117832 TGCTATGCTG
Statistics
Matches: 79, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
24 11 0.14
25 20 0.25
26 48 0.61
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:69134864 original size:27 final size:27
Alignment explanation
Indices: 69134833--69135010 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
69134823 TAAATTGTAC
69134833 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
69134860 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
69134886 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
69134914 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * *
69134942 GGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
69134969 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
69134996 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
69135011 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 105 0.81
28 24 0.19
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:69134947 original size:82 final size:81
Alignment explanation
Indices: 69134834--69134989 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
69134824 AAATTGTACA
* *
69134834 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
69134898 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
69134915 GCACTAAGTGTGCGAGTTTGACTATGTGGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTGGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
69134980 TGCGAGTTGA
65 TGCGAATTGA
69134990 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:69135001 original size:82 final size:81
Alignment explanation
Indices: 69134830--69135010 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
69134820 GATTAAATTG
* *
69134830 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAA
69134895 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
69134911 TGCGGCACTAAGTGTGCGAGTTTGACTATGTGGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTGGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
69134975 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
69134993 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
69135011 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:69138872 original size:46 final size:45
Alignment explanation
Indices: 69138678--69138873 Score: 180
Period size: 46 Copynumber: 4.2 Consensus size: 45
69138668 AGTGTGAGCT
**
69138678 AGTGTAAGACATGTCTGGGACATGCATCGATGACATTATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGAT-ACAAGATGATAGCC
* * * *
69138724 AGTGTAAGACCATGCCTGGGACATGGCATCGATATTAAGATGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGATA-CAAGATGATAGCC
* * *
69138772 AGTGTAAGACATGTCTGGGGCATGCATCGGCCT-CAAGACTTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-G-ATACAAGA-TGATAGCC
* * * * *
69138818 AGTATAAGACATGTCTGGGATATGCATCGGCTACGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATC-GATACAAGATGATAGCC
69138864 AGTGTAAGAC
1 AGTGTAAGAC
69138874 CATTTATGGA
Statistics
Matches: 123, Mismatches: 19, Indels: 16
0.78 0.12 0.10
Matches are distributed among these distances:
45 4 0.03
46 64 0.52
47 29 0.24
48 26 0.21
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGATACAAGATGATAGCC
Found at i:69138939 original size:140 final size:140
Alignment explanation
Indices: 69138682--69138940 Score: 312
Period size: 140 Copynumber: 1.9 Consensus size: 140
69138672 TGAGCTAGTG
* * *
69138682 TAAGACATGTCTGGGACATGCATCGATGACATTATGATAGCCAGTGTAAGACCATGCCTGGGACA
1 TAAGACATGTCTGGGACATGCATCGATGACATGATGATAGCCAGTGTAAGACCATGCATGGAACA
* * *
69138747 TGGCATCGATATTAAGATGAGAGCTAGTGTAAGACATGTCTGGGGCATGCATCGGCCTCAAGACT
66 TGGCATCGATATTAAGATGAGAGCTAATGTAAGACATGTATGGGACATGCATCGGCCTCAAGACT
69138812 TAAGCCAGTA
131 TAAGCCAGTA
* * * **
69138822 TAAGACATGTCTGGGATATGCATCGGCT-ACGA-GATGATAGTCAGTGTAAGACCATTTATGGAA
1 TAAGACATGTCTGGGACATGCATC-GATGAC-ATGATGATAGCCAGTGTAAGACCATGCATGGAA
* * *
69138885 CATGGCATTGA-CTTGAGAT-ATGAGCTAATGTAAGACCAT-TATGGGACATGGCATCG
64 CATGGCATCGATATTAAGATGA-GAGCTAATGTAAGA-CATGTATGGGACAT-GCATCG
69138941 TCACCTTACC
Statistics
Matches: 100, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
138 1 0.01
139 27 0.27
140 69 0.69
141 3 0.03
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (140 bp):
TAAGACATGTCTGGGACATGCATCGATGACATGATGATAGCCAGTGTAAGACCATGCATGGAACA
TGGCATCGATATTAAGATGAGAGCTAATGTAAGACATGTATGGGACATGCATCGGCCTCAAGACT
TAAGCCAGTA
Found at i:69139364 original size:34 final size:34
Alignment explanation
Indices: 69139326--69139398 Score: 110
Period size: 34 Copynumber: 2.1 Consensus size: 34
69139316 TCCCCAGGCT
*
69139326 AGCTAAAAACGGAACAAAAGCACATACCTAATTG
1 AGCTAAAAACGGAACAAAACCACATACCTAATTG
* * *
69139360 AGCTAGAGACGGAACAAAACCGCATACCTAATTG
1 AGCTAAAAACGGAACAAAACCACATACCTAATTG
69139394 AGCTA
1 AGCTA
69139399 GACAAGCTTG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.45, C:0.22, G:0.18, T:0.15
Consensus pattern (34 bp):
AGCTAAAAACGGAACAAAACCACATACCTAATTG
Found at i:69139399 original size:34 final size:34
Alignment explanation
Indices: 69139334--69139400 Score: 116
Period size: 34 Copynumber: 2.0 Consensus size: 34
69139324 CTAGCTAAAA
*
69139334 ACGGAACAAAAGCACATACCTAATTGAGCTAGAG
1 ACGGAACAAAACCACATACCTAATTGAGCTAGAG
*
69139368 ACGGAACAAAACCGCATACCTAATTGAGCTAGA
1 ACGGAACAAAACCACATACCTAATTGAGCTAGA
69139401 CAAGCTTGGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.43, C:0.22, G:0.19, T:0.15
Consensus pattern (34 bp):
ACGGAACAAAACCACATACCTAATTGAGCTAGAG
Found at i:69143327 original size:61 final size:61
Alignment explanation
Indices: 69143260--69143381 Score: 217
Period size: 61 Copynumber: 2.0 Consensus size: 61
69143250 ATCAAATGAA
*
69143260 CATAAATGACTAGAAATGTTGAAATAGAGTAATGAAAAACATTCAAAAATAATTATGGTTT
1 CATAAATGAATAGAAATGTTGAAATAGAGTAATGAAAAACATTCAAAAATAATTATGGTTT
* *
69143321 CATAAATGAATAGAAATGTTGAAATAGAGTAATGGAAAACATTCATAAATAATTATGGTTT
1 CATAAATGAATAGAAATGTTGAAATAGAGTAATGAAAAACATTCAAAAATAATTATGGTTT
69143382 TCTCAAAAAT
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
61 58 1.00
ACGTcount: A:0.48, C:0.06, G:0.16, T:0.30
Consensus pattern (61 bp):
CATAAATGAATAGAAATGTTGAAATAGAGTAATGAAAAACATTCAAAAATAATTATGGTTT
Found at i:69146094 original size:16 final size:16
Alignment explanation
Indices: 69146073--69146106 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
69146063 CTATGCATGT
*
69146073 AAAATATAAAAGACAA
1 AAAATACAAAAGACAA
69146089 AAAATACAAAAGACAA
1 AAAATACAAAAGACAA
69146105 AA
1 AA
69146107 TAATGAAATG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.76, C:0.09, G:0.06, T:0.09
Consensus pattern (16 bp):
AAAATACAAAAGACAA
Found at i:69160021 original size:47 final size:47
Alignment explanation
Indices: 69159958--69160267 Score: 426
Period size: 47 Copynumber: 6.6 Consensus size: 47
69159948 CCCTTCGGGA
* *
69159958 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
69160005 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
69160052 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
69160099 CTTATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGAAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCG-GC
* *
69160147 C-TATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
69160193 CCTATCACATATATATATACTTTCACATTCATCACATTGGCCACTT-GGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCA-TTCGGC
* * *
69160242 CCTATCACATATATATACTTTTACAT
1 CTTATCACATATATACACTTTCACAT
69160268 CAATTTCATC
Statistics
Matches: 240, Mismatches: 18, Indels: 10
0.90 0.07 0.04
Matches are distributed among these distances:
46 2 0.01
47 193 0.80
48 2 0.01
49 42 0.17
50 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.08, T:0.35
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:69169133 original size:7 final size:7
Alignment explanation
Indices: 69169121--69169160 Score: 73
Period size: 7 Copynumber: 5.9 Consensus size: 7
69169111 GCTCCCTGGC
69169121 TGAGAGT
1 TGAGAGT
69169128 TGAGAG-
1 TGAGAGT
69169134 TGAGAGT
1 TGAGAGT
69169141 TGAGAGT
1 TGAGAGT
69169148 TGAGAGT
1 TGAGAGT
69169155 TGAGAG
1 TGAGAG
69169161 GATACTGAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 6 0.19
7 26 0.81
ACGTcount: A:0.30, C:0.00, G:0.45, T:0.25
Consensus pattern (7 bp):
TGAGAGT
Found at i:69169146 original size:20 final size:21
Alignment explanation
Indices: 69169121--69169160 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
69169111 GCTCCCTGGC
69169121 TGAGAGTTGAGAG-TGAGAGT
1 TGAGAGTTGAGAGTTGAGAGT
69169141 TGAGAGTTGAGAGTTGAGAG
1 TGAGAGTTGAGAGTTGAGAG
69169161 GATACTGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.30, C:0.00, G:0.45, T:0.25
Consensus pattern (21 bp):
TGAGAGTTGAGAGTTGAGAGT
Found at i:69169544 original size:19 final size:19
Alignment explanation
Indices: 69169517--69169561 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
69169507 TTACCTCAAT
*
69169517 ATTATAAAAAAAATTATAC
1 ATTAAAAAAAAAATTATAC
69169536 ATTAAAAAAAAAATTATAC
1 ATTAAAAAAAAAATTATAC
69169555 ATTAAAA
1 ATTAAAA
69169562 TGAGTTGTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (19 bp):
ATTAAAAAAAAAATTATAC
Found at i:69170345 original size:107 final size:108
Alignment explanation
Indices: 69170145--69170360 Score: 398
Period size: 107 Copynumber: 2.0 Consensus size: 108
69170135 AAAAAACACG
69170145 TCAAAAATTTTATCAGAGTAATTAACAAAAATTTTAATACAATTTTGTTAGAAATTTTATTATTT
1 TCAAAAATTTTATCAGAGTAATTAACAAAAATTTTAATACAATTTTGTTAGAAATTTTATTATTT
69170210 AAAACTTATTCCAACTTAACATATCATTGTTTTGTTAAACTAA
66 AAAACTTATTCCAACTTAACATATCATTGTTTTGTTAAACTAA
* *
69170253 TCAAAAGTTTTAT-AGAGTAATTAACAAAAATTTTAATACAATTTTGTTTGAAATTTTATTATTT
1 TCAAAAATTTTATCAGAGTAATTAACAAAAATTTTAATACAATTTTGTTAGAAATTTTATTATTT
*
69170317 AAAACTTATTCTAACTTAACATATCATTGTTTTGTTAAACTAA
66 AAAACTTATTCCAACTTAACATATCATTGTTTTGTTAAACTAA
69170360 T
1 T
69170361 TTTTTGTTTA
Statistics
Matches: 105, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
107 93 0.89
108 12 0.11
ACGTcount: A:0.41, C:0.09, G:0.06, T:0.44
Consensus pattern (108 bp):
TCAAAAATTTTATCAGAGTAATTAACAAAAATTTTAATACAATTTTGTTAGAAATTTTATTATTT
AAAACTTATTCCAACTTAACATATCATTGTTTTGTTAAACTAA
Found at i:69175854 original size:41 final size:41
Alignment explanation
Indices: 69175809--69175891 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
69175799 ACCAACACTT
69175809 AGCTTCATAGTTAATGCTAATCTAAATAGATGTACATGGAA
1 AGCTTCATAGTTAATGCTAATCTAAATAGATGTACATGGAA
69175850 AGCTTCATAGTTAATGCTAATCTAAATAGATGTACATGGAA
1 AGCTTCATAGTTAATGCTAATCTAAATAGATGTACATGGAA
69175891 A
1 A
69175892 CACGTGTAGT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31
Consensus pattern (41 bp):
AGCTTCATAGTTAATGCTAATCTAAATAGATGTACATGGAA
Found at i:69180607 original size:19 final size:18
Alignment explanation
Indices: 69180583--69180629 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 18
69180573 ATATAGAAAG
69180583 TATTATAATAATATTA-AAT
1 TATTATAA-AA-ATTAGAAT
69180602 TATTATTAAAAATTAGAAT
1 TATTA-TAAAAATTAGAAT
*
69180621 TTTTATAAA
1 TATTATAAA
69180630 TTTCTTAACT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 8 0.32
19 14 0.56
20 3 0.12
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (18 bp):
TATTATAAAAATTAGAAT
Found at i:69180759 original size:27 final size:27
Alignment explanation
Indices: 69180729--69180783 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
69180719 CTATTTTAGA
69180729 ATGATTTGTCAAAAAAATTACAAGTTT
1 ATGATTTGTCAAAAAAATTACAAGTTT
69180756 ATGATTTGTCAAAAAAATTACAAGTTT
1 ATGATTTGTCAAAAAAATTACAAGTTT
69180783 A
1 A
69180784 ATGGGTAAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.45, C:0.07, G:0.11, T:0.36
Consensus pattern (27 bp):
ATGATTTGTCAAAAAAATTACAAGTTT
Found at i:69183448 original size:24 final size:23
Alignment explanation
Indices: 69183398--69183450 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 23
69183388 CTTTTTTAAG
*
69183398 TTTTTTTTATTTGTCCTTATTTTA
1 TTTTATTTATTTGT-CTTATTTTA
69183422 TTTTATTTATTTGT-TTATTATTGA
1 TTTTATTTATTTGTCTTATT-TT-A
69183446 TTTTA
1 TTTTA
69183451 AAAAACTTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
22 5 0.19
23 2 0.08
24 19 0.73
ACGTcount: A:0.17, C:0.04, G:0.06, T:0.74
Consensus pattern (23 bp):
TTTTATTTATTTGTCTTATTTTA
Found at i:69183549 original size:21 final size:21
Alignment explanation
Indices: 69183518--69183695 Score: 94
Period size: 21 Copynumber: 8.7 Consensus size: 21
69183508 TATATATGAA
69183518 ATTATTTTTTAAAATTTTAAAT
1 ATTA-TTTTTAAAATTTTAAAT
69183540 ATTATTTTTAAAATTTTAAAT
1 ATTATTTTTAAAATTTTAAAT
*
69183561 A-TATTTTTAATAA-TATAAA-
1 ATTATTTTTAA-AATTTTAAAT
69183580 A-TA--TTTAAATATTTTAAAGAT
1 ATTATTTTTAAA-ATTTT-AA-AT
* ** * *
69183601 ATGACCTTTCAAA-TTT-ATT
1 ATTATTTTTAAAATTTTAAAT
*
69183620 ATTAGTTTTATAATATTTTAAAT
1 ATTA-TTTT-TAAAATTTTAAAT
*
69183643 -GTATATTTT-AAATTTTAAAT
1 ATTAT-TTTTAAAATTTTAAAT
*
69183663 ATT-TTTTT--AATTTTACAT
1 ATTATTTTTAAAATTTTAAAT
* *
69183681 ATAATTTTTTAAATT
1 ATTATTTTTAAAATT
69183696 ATGATTTTTT
Statistics
Matches: 122, Mismatches: 16, Indels: 37
0.70 0.09 0.21
Matches are distributed among these distances:
16 1 0.01
17 6 0.05
18 13 0.11
19 18 0.15
20 29 0.24
21 31 0.25
22 16 0.13
23 3 0.02
24 5 0.04
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.55
Consensus pattern (21 bp):
ATTATTTTTAAAATTTTAAAT
Found at i:69183554 original size:34 final size:34
Alignment explanation
Indices: 69183476--69183554 Score: 97
Period size: 34 Copynumber: 2.3 Consensus size: 34
69183466 ATTCGAAATG
*
69183476 TTTTATAATATATTTTTTAAATTTTAAATATATAT
1 TTTTAAAAT-TATTTTTTAAATTTTAAATATATAT
* * *
69183511 ATATGAAATTATTTTTTAAAATTTTAAATAT-TAT
1 TTTTAAAATTATTTTTT-AAATTTTAAATATATAT
69183545 TTTTAAAATT
1 TTTTAAAATT
69183555 TTAAATATAT
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
34 18 0.50
35 18 0.50
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (34 bp):
TTTTAAAATTATTTTTTAAATTTTAAATATATAT
Found at i:69183674 original size:18 final size:18
Alignment explanation
Indices: 69183634--69183692 Score: 55
Period size: 20 Copynumber: 3.1 Consensus size: 18
69183624 GTTTTATAAT
* *
69183634 ATTTTAAATGTATATTTTAA
1 ATTTTAAA--TATTTTTTTA
69183654 ATTTTAAATATTTTTTTA
1 ATTTTAAATATTTTTTTA
*
69183672 ATTTTACATATAATTTTTTA
1 ATTTTA-A-ATATTTTTTTA
69183692 A
1 A
69183693 ATTATGATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
18 14 0.41
19 1 0.03
20 19 0.56
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (18 bp):
ATTTTAAATATTTTTTTA
Found at i:69183877 original size:21 final size:20
Alignment explanation
Indices: 69183853--69183909 Score: 69
Period size: 21 Copynumber: 2.8 Consensus size: 20
69183843 TGACTTTATT
69183853 TAAAATATATATATTAAAAAG
1 TAAAA-ATATATATTAAAAAG
* * *
69183874 TAAAAATTTAAATTAAAAAAT
1 TAAAAATATATATT-AAAAAG
69183895 TAAAAATATATATTA
1 TAAAAATATATATTA
69183910 TAACTGGTTA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
20 8 0.27
21 22 0.73
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (20 bp):
TAAAAATATATATTAAAAAG
Found at i:69189232 original size:19 final size:20
Alignment explanation
Indices: 69189192--69189235 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
69189182 GTCTCTTTAG
* *
69189192 GCATT-CATTTCATGCATTT
1 GCATTACATTGCATGCATAT
69189211 GCATTACATTGCAT-CATAT
1 GCATTACATTGCATGCATAT
69189230 GCATTA
1 GCATTA
69189236 GATTTTCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.41
Consensus pattern (20 bp):
GCATTACATTGCATGCATAT
Found at i:69191839 original size:7 final size:8
Alignment explanation
Indices: 69191818--69191847 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
69191808 TCTCATGAAT
69191818 TCAAAAAA
1 TCAAAAAA
69191826 TCAAAAAA
1 TCAAAAAA
69191834 TCAAAAAAA
1 TC-AAAAAA
69191843 TCAAA
1 TCAAA
69191848 GTCAAAATAG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.73, C:0.13, G:0.00, T:0.13
Consensus pattern (8 bp):
TCAAAAAA
Found at i:69194274 original size:44 final size:43
Alignment explanation
Indices: 69194226--69194452 Score: 161
Period size: 44 Copynumber: 5.2 Consensus size: 43
69194216 AGACACAAAC
69194226 CTTGCCTCTTTCGGTTGTGATAGAGCTGGTTGAAGACAAAAGAT
1 CTTGCCTCTTTC-GTTGTGATAGAGCTGGTTGAAGACAAAAGAT
* * * ** ** * * * * *
69194270 CTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAA-AC
1 CTTGCC-TCTTTCGTTGTGATAG-AGCTGGTTGAAGACAAAAGAT
69194314 CTTGCCTCTTTCGGTTGTGATAGAGCTGGTTGAAGACAAAAGAT
1 CTTGCCTCTTTC-GTTGTGATAGAGCTGGTTGAAGACAAAAGAT
* * * ** ** * * * * *
69194358 CTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAA-AC
1 CTTGCC-TCTTTCGTTGTGATAG-AGCTGGTTGAAGACAAAAGAT
69194402 CTTGCCTCTTTCTGTTGTGATAGAGCTGGTTGAAGACAAAAGAT
1 CTTGCCTCTTTC-GTTGTGATAGAGCTGGTTGAAGACAAAAGAT
69194446 CTTGCCT
1 CTTGCCT
69194453 TCCTGCATTA
Statistics
Matches: 127, Mismatches: 48, Indels: 16
0.66 0.25 0.08
Matches are distributed among these distances:
43 36 0.28
44 55 0.43
45 36 0.28
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (43 bp):
CTTGCCTCTTTCGTTGTGATAGAGCTGGTTGAAGACAAAAGAT
Found at i:69194286 original size:88 final size:88
Alignment explanation
Indices: 69194002--69194505 Score: 771
Period size: 88 Copynumber: 5.8 Consensus size: 88
69193992 CAATGAAGTT
* *
69194002 AAAGATCTTGCCTTCCTACATTAACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGT
1 AAAGATCTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGT
* *
69194067 TGTGATGGAGCTGGTTGAAGAAA
66 TGTGATAGAGCTGGTTGAAGACA
* * * * * *
69194090 AAAGATCTTGCTTTCCTGCGTTGACAGCGAAGCAGGTCGAAAAGACAAACCTTGCCTC--TCGGT
1 AAAGATCTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGT
* *
69194153 TGTGGTAGAGTTGGTTGAAGACA
66 TGTGATAGAGCTGGTTGAAGACA
* * * **
69194176 ATAGATCTTGCCGTCCTGCATTGACAATGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGT
1 AAAGATCTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGT
69194241 TGTGATAGAGCTGGTTGAAGACA
66 TGTGATAGAGCTGGTTGAAGACA
69194264 AAAGATCTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGT
1 AAAGATCTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGT
69194329 TGTGATAGAGCTGGTTGAAGACA
66 TGTGATAGAGCTGGTTGAAGACA
*
69194352 AAAGATCTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCTGT
1 AAAGATCTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGT
69194417 TGTGATAGAGCTGGTTGAAGACA
66 TGTGATAGAGCTGGTTGAAGACA
* * * * **
69194440 AAAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCAAAGACA-AAGCCTTGCCTCCATCGGT
1 AAAGATCTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGT
69194504 TG
66 TG
69194506 CATTGGAGCT
Statistics
Matches: 379, Mismatches: 35, Indels: 5
0.90 0.08 0.01
Matches are distributed among these distances:
86 73 0.19
87 17 0.04
88 289 0.76
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (88 bp):
AAAGATCTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGT
TGTGATAGAGCTGGTTGAAGACA
Found at i:69194563 original size:262 final size:261
Alignment explanation
Indices: 69194002--69194523 Score: 742
Period size: 262 Copynumber: 2.0 Consensus size: 261
69193992 CAATGAAGTT
* *
69194002 AAAGATCTTGCCTTCCTACATTAACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGT
1 AAAGATCTTGCCTCCCTACA-TGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGT
* * * * *
69194067 TGTGATGGAGCTGGTTGAAGAAAAAAGATCTTGCTTTCCTGCGTTGACAGCGAAGCAGGTCGAAA
65 TGTGATAGAGCTGGTTGAAGAAAAAAGATCTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAA
* * * *
69194132 AGACAAACCTTGCCTCTCGGTTGTGGTAGAGTTGGTTGAAGACAATAGATCTTGCCGTCCTGCAT
130 ACACAAACCTTGCCTCTCGGTTGTGATAGAGCTGGTTGAAGACAAAAGATCTTGCCGTCCTGCAT
* * * ** * *
69194197 TGACAATGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTGTGATAGAGCTGGTTGAAGA
195 TAACAACGAAGCAGATCAAAGACACAAACCTTGCCTCCATCGGTTGTCATAGAGCTGGTTAAAGA
69194262 CA
260 CA
* *
69194264 AAAGATCTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGT
1 AAAGATCTTGCCTCCCTACA-TGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGT
* *
69194329 TGTGATAGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAG
65 TGTGATAGAGCTGGTTGAAGAAAAAAGATCTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAA
* *
69194394 ACACAAACCTTGCCTCTTTCTGTTGTGATAGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGC
130 ACACAAACCTTGCCTC--TCGGTTGTGATAGAGCTGGTTGAAGACAAAAGATCTTGCCGTCCTGC
* * *
69194459 ATTAACAGCGAAGCAGATCAAAGACA-AAGCCTTGCCTCCATCGGTTG-CATTGGAGCTGGTTAA
193 ATTAACAACGAAGCAGATCAAAGACACAAACCTTGCCTCCATCGGTTGTCA-TAGAGCTGGTTAA
69194522 AG
257 AG
69194524 GTTACAGATT
Statistics
Matches: 232, Mismatches: 25, Indels: 5
0.89 0.10 0.02
Matches are distributed among these distances:
262 137 0.59
263 31 0.13
264 64 0.28
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (261 bp):
AAAGATCTTGCCTCCCTACATGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTT
GTGATAGAGCTGGTTGAAGAAAAAAGATCTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAAA
CACAAACCTTGCCTCTCGGTTGTGATAGAGCTGGTTGAAGACAAAAGATCTTGCCGTCCTGCATT
AACAACGAAGCAGATCAAAGACACAAACCTTGCCTCCATCGGTTGTCATAGAGCTGGTTAAAGAC
A
Found at i:69194880 original size:44 final size:45
Alignment explanation
Indices: 69194801--69195018 Score: 153
Period size: 44 Copynumber: 4.8 Consensus size: 45
69194791 TGAAGATAGT
* * * **
69194801 AATCCTATCTCCCTGAAATTACAGTGGAGCGGATTAAAATAAAG-
1 AATCTTATCTCTCTGAAGTTACAGTGGAGTAGATTAAAATAAAGA
* *
69194845 GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATTACATCAGATTGAAGCCAGA
1 AATCTTATCTCTCTGAAGTTACAGTGGAGTAGATTA-A--A-A-T-AA---AGA
* * ** *
69194899 GATC-T-TCTCTCTG-AGATTACAGCGGAGTAGATTTAAGCT--AGT
1 AATCTTATCTCTCTGAAG-TTACAGTGGAGTAGA-TTAAAATAAAGA
* *
69194941 AATCCTATCTCTCTGAAGTTACAGTGGAGTGGATTAAAATAAA-A
1 AATCTTATCTCTCTGAAGTTACAGTGGAGTAGATTAAAATAAAGA
*
69194985 AATCTTATCTCTCTGAAGTTACAGTAGAGTAGAT
1 AATCTTATCTCTCTGAAGTTACAGTGGAGTAGAT
69195019 CACATCACAT
Statistics
Matches: 136, Mismatches: 21, Indels: 34
0.71 0.11 0.18
Matches are distributed among these distances:
42 5 0.04
43 6 0.04
44 81 0.60
45 4 0.03
47 1 0.01
48 2 0.01
49 1 0.01
50 2 0.01
51 2 0.01
52 22 0.16
53 6 0.04
54 4 0.03
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (45 bp):
AATCTTATCTCTCTGAAGTTACAGTGGAGTAGATTAAAATAAAGA
Found at i:69194963 original size:140 final size:140
Alignment explanation
Indices: 69194764--69195078 Score: 438
Period size: 140 Copynumber: 2.2 Consensus size: 140
69194754 TCAGATCTTA
69194764 TCTCCCTGAGATATCAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAAATTACAGTGGA
1 TCTCCCTGAGATATCAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAAATTACAGTGGA
** * *
69194829 GCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATTACATCAGATTGAAG
66 GCGGATTAAAATAAAAAATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCACATTGAAG
69194894 CCAGAGATCT
131 CCAGAGATCT
* * * * * *
69194904 TCTCTCTGAGAT-TACAGCGGAGTAGATTTAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGG
1 TCTCCCTGAGATAT-CAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAAATTACAGTGG
*
69194968 AGTGGATTAAAATAAAAAATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCACATTGAA
65 AGCGGATTAAAATAAAAAATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCACATTGAA
69195033 GCCAGTA-ATTCT
130 GCCAG-AGA-TCT
* * **
69195045 ATCTCCCTG-GATAGCAGTGGAATAGATTGAAGAT
1 -TCTCCCTGAGATATCAGCGGAGCAGATTGAAGAT
69195079 TGCAGATCTT
Statistics
Matches: 153, Mismatches: 17, Indels: 9
0.85 0.09 0.05
Matches are distributed among these distances:
139 1 0.01
140 122 0.80
141 23 0.15
142 7 0.05
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (140 bp):
TCTCCCTGAGATATCAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAAATTACAGTGGA
GCGGATTAAAATAAAAAATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCACATTGAAG
CCAGAGATCT
Found at i:69198903 original size:100 final size:100
Alignment explanation
Indices: 69198730--69198912 Score: 296
Period size: 100 Copynumber: 1.8 Consensus size: 100
69198720 TATTGTGAGT
* * * * * *
69198730 TCACGTGTGTAGTACTAAGTGCATGCTACTACATGTACCGGATAGTTGGTCGTATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCGCATGTATAATACT
69198795 AAGTGCAGGCTACTATGCGTACTCGATAACTTCGA
66 AAGTGCAGGCTACTATGCGTACTCGATAACTTCGA
69198830 TCACGTGTGTAGTACTAAGTGCAGGCTACTA-AGTGTACCAGATAATTGGTCGCATGTATAATAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACA-TGTACCAGATAATTGGTCGCATGTATAATAC
69198894 TAAGTGCAGGCTACTATGC
65 TAAGTGCAGGCTACTATGC
69198913 ATACCAGATA
Statistics
Matches: 76, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
99 1 0.01
100 75 0.99
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.30
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCGCATGTATAATACT
AAGTGCAGGCTACTATGCGTACTCGATAACTTCGA
Found at i:69198918 original size:49 final size:49
Alignment explanation
Indices: 69198735--69198922 Score: 193
Period size: 49 Copynumber: 3.8 Consensus size: 49
69198725 TGAGTTCACG
* * * *
69198735 TGTGTAGTACTAAGTGCATGCTACTA--CATGTACCGGATAGTTGGTCGTA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCA--TACCAGATAATTGGTCGCA
* * * *
69198784 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTC-GATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCATAC-CAGATAA-TT-GGTCGCA
* **
69198835 TGTGTAGTACTAAGTGCAGGCTACTAAGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGATAATTGGTCGCA
* *
69198884 TGTATAATACTAAGTGCAGGCTACTATGCATACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGATA
69198923 GCTTTGGCTA
Statistics
Matches: 116, Mismatches: 17, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
49 70 0.60
50 6 0.05
51 40 0.34
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGATAATTGGTCGCA
Found at i:69207541 original size:49 final size:50
Alignment explanation
Indices: 69207462--69207708 Score: 284
Period size: 49 Copynumber: 5.0 Consensus size: 50
69207452 ATCTATTGTG
* **
69207462 AGGTCACATGTGTAGTACTAAGTGCTGGCTACTATGTGTACTGGATAGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTT
* * *
69207512 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCA-ATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CCAGAT-AGTT
* * * * * *
69207562 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTT
** * *
69207612 AGGTCACGCGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTT
* * *
69207662 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAAATAG
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAG
69207709 CTTTGGCTAC
Statistics
Matches: 166, Mismatches: 27, Indels: 9
0.82 0.13 0.04
Matches are distributed among these distances:
49 78 0.47
50 52 0.31
51 36 0.22
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTT
Found at i:69207737 original size:150 final size:150
Alignment explanation
Indices: 69207462--69207745 Score: 392
Period size: 150 Copynumber: 1.9 Consensus size: 150
69207452 ATCTATTGTG
* * * ** *
69207462 AGGTCACATGTGTAGTACTAAGTGCTGGCTACTATGTGTACTGGATAGTTGGTCGCATGTGTAGT
1 AGGTCACACGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGT
* * * * *
69207527 ACTAAGTGCAGGCTACTATGCGTACCCAATAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCT
66 ACTAAGTGCAGGCTACTATGCGTACCAAATAACTTCGATCAAGTGTGTAGAAATAAGTGCAGGCA
69207592 ACTACGTGTATCAGATGGTT
131 ACTACGTGTATCAGATGGTT
*
69207612 AGGTCACGCGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGT
1 AGGTCACACGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGT
* * * *
69207677 ACTAAGTGCAGGCTACTATGCGTACCAAATAGCTTTGGCTACAAGTGTG-A-AAATATGTGCAGG
66 ACTAAGTGCAGGCTACTATGCGTACCAAATAAC-TTCGAT-CAAGTGTGTAGAAATAAGTGCAGG
69207740 CAACTA
129 CAACTA
69207746 AGTATAAGTT
Statistics
Matches: 116, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
150 104 0.90
151 5 0.04
152 7 0.06
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (150 bp):
AGGTCACACGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGT
ACTAAGTGCAGGCTACTATGCGTACCAAATAACTTCGATCAAGTGTGTAGAAATAAGTGCAGGCA
ACTACGTGTATCAGATGGTT
Found at i:69210673 original size:30 final size:30
Alignment explanation
Indices: 69210639--69210709 Score: 88
Period size: 30 Copynumber: 2.4 Consensus size: 30
69210629 CTGTTCAAGT
* *
69210639 TCATATCACCCGGACATGGGCGATTCGGGC
1 TCATATCACCCGGACATAGGCGATTCGAGC
* * *
69210669 TCATATCACCTGGACATAGGCGGTTCGAGT
1 TCATATCACCCGGACATAGGCGATTCGAGC
*
69210699 TCATTTCACCC
1 TCATATCACCC
69210710 AGAGCAACCA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.21, C:0.30, G:0.24, T:0.25
Consensus pattern (30 bp):
TCATATCACCCGGACATAGGCGATTCGAGC
Found at i:69213973 original size:20 final size:22
Alignment explanation
Indices: 69213943--69213992 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
69213933 TCTGTAGCAT
*
69213943 GGGCATGTCCC-AGG-TCACAC
1 GGGCGTGTCCCTAGGATCACAC
* *
69213963 GGGTGTGTCCCTTGGATCACAC
1 GGGCGTGTCCCTAGGATCACAC
69213985 GGGCGTGT
1 GGGCGTGT
69213993 GAGCCCTGTA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
20 9 0.38
21 2 0.08
22 13 0.54
ACGTcount: A:0.14, C:0.28, G:0.36, T:0.22
Consensus pattern (22 bp):
GGGCGTGTCCCTAGGATCACAC
Found at i:69214995 original size:7 final size:7
Alignment explanation
Indices: 69214983--69215022 Score: 64
Period size: 7 Copynumber: 5.9 Consensus size: 7
69214973 CACGAAAATA
69214983 AAATATT
1 AAATATT
69214990 AAATATT
1 AAATATT
69214997 AAATATT
1 AAATATT
69215004 AAATATT
1 AAATATT
*
69215011 -TATATT
1 AAATATT
69215017 AAATAT
1 AAATAT
69215023 AAAAAAGTAC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
6 5 0.17
7 25 0.83
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (7 bp):
AAATATT
Found at i:69215086 original size:15 final size:15
Alignment explanation
Indices: 69215062--69215091 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
69215052 ATTTACCAAA
*
69215062 TAAAATATTAAATTT
1 TAAAAAATTAAATTT
69215077 TAAAAAATTAAATTT
1 TAAAAAATTAAATTT
69215092 AATTAAGAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
TAAAAAATTAAATTT
Found at i:69215289 original size:21 final size:20
Alignment explanation
Indices: 69215263--69215302 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 20
69215253 AAAATTTTAA
69215263 AAATTAAAAATATTATAAAAC
1 AAATTAAAAATATTA-AAAAC
69215284 AAATTAAAAATATTAAAAA
1 AAATTAAAAATATTAAAAA
69215303 TATTTTAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.28
Consensus pattern (20 bp):
AAATTAAAAATATTAAAAAC
Found at i:69215299 original size:30 final size:30
Alignment explanation
Indices: 69215261--69215333 Score: 112
Period size: 30 Copynumber: 2.5 Consensus size: 30
69215251 AAAAAATTTT
69215261 AAAA-ATTAAAAATATTATAAAACAAATTA
1 AAAATATTAAAAATATTATAAAACAAATTA
*
69215290 AAAATATTAAAAATATTTTAAAACAAATTA
1 AAAATATTAAAAATATTATAAAACAAATTA
* *
69215320 AACATATTTAAAAT
1 AAAATATTAAAAAT
69215334 TTAAAATATA
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
29 4 0.10
30 36 0.90
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (30 bp):
AAAATATTAAAAATATTATAAAACAAATTA
Found at i:69215328 original size:21 final size:19
Alignment explanation
Indices: 69215249--69215302 Score: 60
Period size: 21 Copynumber: 2.9 Consensus size: 19
69215239 TAATATATTT
*
69215249 TTAAAAA-ATTT-TAAAAA
1 TTAAAAATATTTAAAAAAA
69215266 TTAAAAATATTATAAAACAAA
1 TTAAAAATATT-TAAAA-AAA
69215287 TTAAAAATA-TTAAAAA
1 TTAAAAATATTTAAAAA
69215303 TATTTTAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
17 7 0.22
18 4 0.12
19 6 0.19
20 3 0.09
21 12 0.38
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (19 bp):
TTAAAAATATTTAAAAAAA
Found at i:69215330 original size:10 final size:10
Alignment explanation
Indices: 69215248--69215365 Score: 58
Period size: 9 Copynumber: 12.0 Consensus size: 10
69215238 ATAATATATT
69215248 TTTAAAAA-A
1 TTTAAAAATA
*
69215257 TTTTAAAA-A
1 TTTAAAAATA
69215266 -TTAAAAATA
1 TTTAAAAATA
69215275 TTATAAAACA-A
1 TT-TAAAA-ATA
*
69215286 ATTAAAAATA
1 TTTAAAAATA
69215296 -TTAAAAATA
1 TTTAAAAATA
69215305 TTTTAAAACA-A
1 -TTTAAAA-ATA
* *
69215316 ATTAAACATA
1 TTTAAAAATA
69215326 TTT--AAA-A
1 TTTAAAAATA
69215333 TTTAAAATATACA
1 TTTAAAA-AT--A
69215346 TTT-AAAATA
1 TTTAAAAATA
69215355 TTATAAAAATA
1 TT-TAAAAATA
69215366 ATAATAAATT
Statistics
Matches: 85, Mismatches: 7, Indels: 32
0.69 0.06 0.26
Matches are distributed among these distances:
7 4 0.05
8 8 0.09
9 25 0.29
10 17 0.20
11 22 0.26
12 5 0.06
13 4 0.05
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (10 bp):
TTTAAAAATA
Found at i:69215431 original size:21 final size:21
Alignment explanation
Indices: 69215407--69215498 Score: 84
Period size: 21 Copynumber: 4.3 Consensus size: 21
69215397 TATTTAAATG
*
69215407 TTTAATATTATTAAAAATATA
1 TTTAAAATTATTAAAAATATA
69215428 TTTAAAATTA--AAAAATAATA
1 TTTAAAATTATTAAAAAT-ATA
*
69215448 TTTAAAAATT-TAAAATATATATA
1 TTT-AAAATTATTAAA-A-ATATA
*
69215471 TTTAAAATTTTTAAAAA-ATA
1 TTTAAAATTATTAAAAATATA
69215491 TTATAAAA
1 TT-TAAAA
69215499 CATTTCAAAT
Statistics
Matches: 61, Mismatches: 2, Indels: 16
0.77 0.03 0.20
Matches are distributed among these distances:
19 6 0.10
20 11 0.18
21 21 0.34
22 10 0.16
23 11 0.18
24 2 0.03
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (21 bp):
TTTAAAATTATTAAAAATATA
Found at i:69215460 original size:22 final size:22
Alignment explanation
Indices: 69215419--69215490 Score: 87
Period size: 23 Copynumber: 3.3 Consensus size: 22
69215409 TAATATTATT
69215419 AAAAAT-ATATTT-AAAA-TTA
1 AAAAATAATATTTAAAAATTTA
69215438 AAAAATAATATTTAAAAATTTA
1 AAAAATAATATTTAAAAATTTA
* *
69215460 AAATATATATATTTAAAATTTTTA
1 AAAAATA-ATATTTAAAA-ATTTA
69215484 AAAAATA
1 AAAAATA
69215491 TTATAAAACA
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
19 6 0.13
20 6 0.13
21 4 0.09
22 9 0.20
23 10 0.22
24 10 0.22
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (22 bp):
AAAAATAATATTTAAAAATTTA
Found at i:69215476 original size:43 final size:45
Alignment explanation
Indices: 69215423--69215510 Score: 119
Period size: 43 Copynumber: 2.0 Consensus size: 45
69215413 ATTATTAAAA
69215423 ATATATTTAAAA-TTAAAAAATAATATT-TAAAA-ATTTAAAATAT
1 ATATATTTAAAATTTAAAAAA-AATATTATAAAACATTTAAAATAT
** *
69215466 ATATATTTAAAATTTTTAAAAAATATTATAAAACATTTCAAATAT
1 ATATATTTAAAATTTAAAAAAAATATTATAAAACATTTAAAATAT
69215511 GCATTTCAAG
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
43 18 0.46
44 11 0.28
45 10 0.26
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (45 bp):
ATATATTTAAAATTTAAAAAAAATATTATAAAACATTTAAAATAT
Found at i:69215491 original size:22 final size:20
Alignment explanation
Indices: 69215419--69215491 Score: 85
Period size: 22 Copynumber: 3.4 Consensus size: 20
69215409 TAATATTATT
69215419 AAAAATATATTTAAAA-TTA
1 AAAAATATATTTAAAATTTA
69215438 AAAAATAATATTTAAAAATTTA
1 AAAAAT-ATATTT-AAAATTTA
69215460 AAATATATATATTTAAAATTTTTA
1 AAA-A-ATATATTTAAAA--TTTA
69215484 AAAAATAT
1 AAAAATAT
69215492 TATAAAACAT
Statistics
Matches: 47, Mismatches: 0, Indels: 11
0.81 0.00 0.19
Matches are distributed among these distances:
19 6 0.13
20 6 0.13
21 4 0.09
22 14 0.30
23 8 0.17
24 9 0.19
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (20 bp):
AAAAATATATTTAAAATTTA
Found at i:69215631 original size:28 final size:29
Alignment explanation
Indices: 69215584--69215638 Score: 78
Period size: 28 Copynumber: 1.9 Consensus size: 29
69215574 AAAAACTTTA
*
69215584 AAAAAAGTAAATAAATAAAA-AAAGAAAG
1 AAAAAAGTAAATAAACAAAACAAAGAAAG
69215612 AAAAAAGT-AATAAAACAAAACAAAGAA
1 AAAAAAGTAAAT-AAACAAAACAAAGAA
69215639 TCTGACAGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
27 3 0.12
28 15 0.62
29 6 0.25
ACGTcount: A:0.78, C:0.04, G:0.09, T:0.09
Consensus pattern (29 bp):
AAAAAAGTAAATAAACAAAACAAAGAAAG
Found at i:69233793 original size:46 final size:46
Alignment explanation
Indices: 69233743--69233918 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
69233733 TGGTTGAGCA
69233743 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
69233789 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
69233834 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
69233882 CCCGAGCTCGTTGAGTTGAGTTCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69233919 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.56
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:69233899 original size:93 final size:93
Alignment explanation
Indices: 69233740--69233911 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
69233730 GGATGGTTGA
* *
69233740 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
69233805 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
69233833 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
69233898 TGAGTTCGAGTTCG
66 TGAGTCCGAGTTCG
69233912 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:69244614 original size:82 final size:82
Alignment explanation
Indices: 69244477--69244642 Score: 314
Period size: 82 Copynumber: 2.0 Consensus size: 82
69244467 GACACATACC
*
69244477 AAAAAATGACCAAGTCCCCTATACATGCCATACTTAAAATAACAAATTCACTATACCCAATGTTC
1 AAAAAATGACCAAGTCCCCTATACATGCCATACTCAAAATAACAAATTCACTATACCCAATGTTC
69244542 TTTTAATAGTGTGATCG
66 TTTTAATAGTGTGATCG
*
69244559 AAAAAATGACCAAGTCCCCTATACATGCCATACTCAAAATAGCAAATTCACTATACCCAATGTTC
1 AAAAAATGACCAAGTCCCCTATACATGCCATACTCAAAATAACAAATTCACTATACCCAATGTTC
69244624 TTTTAATAGTGTGATCG
66 TTTTAATAGTGTGATCG
69244641 AA
1 AA
69244643 TGCTCTGACA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
82 82 1.00
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.28
Consensus pattern (82 bp):
AAAAAATGACCAAGTCCCCTATACATGCCATACTCAAAATAACAAATTCACTATACCCAATGTTC
TTTTAATAGTGTGATCG
Found at i:69252998 original size:50 final size:50
Alignment explanation
Indices: 69252900--69253007 Score: 146
Period size: 50 Copynumber: 2.2 Consensus size: 50
69252890 TGGTGAACCC
* *
69252900 CCTTACTTCTTCTTTTAGCGTACACTACTTCGTCATATCTCAAGTGTACT
1 CCTTACTGCTTCTTTTAGAGTACACTACTTCGTCATATCTCAAGTGTACT
* * **
69252950 TCTTACTGCTTCTTTTAGAGTACACTACTTTGTCATATCT-TTGTTGTACT
1 CCTTACTGCTTCTTTTAGAGTACACTACTTCGTCATATCTCAAG-TGTACT
69253000 CCTTACTG
1 CCTTACTG
69253008 ATACTCTTTT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
49 1 0.02
50 49 0.98
ACGTcount: A:0.19, C:0.25, G:0.11, T:0.45
Consensus pattern (50 bp):
CCTTACTGCTTCTTTTAGAGTACACTACTTCGTCATATCTCAAGTGTACT
Found at i:69255422 original size:30 final size:30
Alignment explanation
Indices: 69255383--69255444 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 30
69255373 TACATGAAAT
69255383 ACATGGAAAT-GAT-ATTACATGATATATTGAA
1 ACATGGAAATGGATGA-TACATG-TATA-TGAA
69255414 ACAT-GAAATGGATGATACATGTATATGAA
1 ACATGGAAATGGATGATACATGTATATGAA
69255443 AC
1 AC
69255445 TTGCTTAGTG
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
29 6 0.21
30 9 0.31
31 13 0.45
32 1 0.03
ACGTcount: A:0.45, C:0.08, G:0.18, T:0.29
Consensus pattern (30 bp):
ACATGGAAATGGATGATACATGTATATGAA
Found at i:69275456 original size:15 final size:15
Alignment explanation
Indices: 69275438--69275481 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
69275428 TCTTAAAATT
69275438 TTAATATTTAATTTG
1 TTAATATTTAATTTG
*
69275453 TTAATAATT-ATTTG
1 TTAATATTTAATTTG
*
69275467 TTCAACATTTAATTT
1 TT-AATATTTAATTT
69275482 TAAGTAAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
14 7 0.29
15 13 0.54
16 4 0.17
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.57
Consensus pattern (15 bp):
TTAATATTTAATTTG
Found at i:69277442 original size:20 final size:22
Alignment explanation
Indices: 69277419--69277459 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
69277409 ATTGCACCCT
69277419 AATTT-ATACC-ATTTTTTTTC
1 AATTTGATACCTATTTTTTTTC
69277439 AATTTGATACCTATTTTTTTT
1 AATTTGATACCTATTTTTTTT
69277460 TTGTATTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.26
21 5 0.26
22 9 0.47
ACGTcount: A:0.24, C:0.12, G:0.02, T:0.61
Consensus pattern (22 bp):
AATTTGATACCTATTTTTTTTC
Found at i:69278932 original size:11 final size:11
Alignment explanation
Indices: 69278916--69278940 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
69278906 GGCCACAGAG
69278916 GGTAAGGCCAT
1 GGTAAGGCCAT
69278927 GGTAAGGCCAT
1 GGTAAGGCCAT
69278938 GGT
1 GGT
69278941 TGGTCTCGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.16, G:0.40, T:0.20
Consensus pattern (11 bp):
GGTAAGGCCAT
Found at i:69279794 original size:22 final size:22
Alignment explanation
Indices: 69279769--69279816 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
69279759 CAAAGCTCAT
*
69279769 AAACTGTCCTTCAGTTCATCAA
1 AAACTGCCCTTCAGTTCATCAA
69279791 AAACTGCCCTTCAGTTCATCAA
1 AAACTGCCCTTCAGTTCATCAA
69279813 AAAC
1 AAAC
69279817 ATTGCATTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.35, C:0.29, G:0.08, T:0.27
Consensus pattern (22 bp):
AAACTGCCCTTCAGTTCATCAA
Found at i:69282955 original size:6 final size:6
Alignment explanation
Indices: 69282944--69282969 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
69282934 ATTATTTTTA
69282944 ATTAAT ATTAAT ATTAAT ATTAAT AT
1 ATTAAT ATTAAT ATTAAT ATTAAT AT
69282970 AAAATTATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
ATTAAT
Found at i:69282964 original size:25 final size:23
Alignment explanation
Indices: 69282910--69282964 Score: 65
Period size: 25 Copynumber: 2.3 Consensus size: 23
69282900 AAGGAGGGAA
* *
69282910 AATATTTTTATTATTGTTAATAT
1 AATATTTTTATTAATATTAATAT
69282933 AATTATTTTTAATTAATATTAATATT
1 AA-TATTTTT-ATTAATATTAATA-T
69282959 AATATT
1 AATATT
69282965 AATATAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 2 0.07
24 7 0.26
25 15 0.56
26 3 0.11
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (23 bp):
AATATTTTTATTAATATTAATAT
Found at i:69285066 original size:16 final size:16
Alignment explanation
Indices: 69285045--69285113 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
69285035 TTTGGTTCGC
69285045 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
69285061 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
69285077 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
69285094 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
69285110 TGTA
1 TGTA
69285114 ATAGCTAATC
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:69285091 original size:33 final size:32
Alignment explanation
Indices: 69285045--69285113 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
69285035 TTTGGTTCGC
69285045 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
69285077 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGTGTATTGGATTAGAGG
69285110 TGTA
1 TGTA
69285114 ATAGCTAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 6 0.17
33 30 0.83
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (32 bp):
TGTATTGGATTAGAGGTGTATTGGATTAGAGG
Found at i:69285178 original size:44 final size:45
Alignment explanation
Indices: 69285094--69285184 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
69285084 GGATTAGAGG
* * *
69285094 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
69285139 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
69285183 TG
1 TG
69285185 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:69290595 original size:14 final size:15
Alignment explanation
Indices: 69290576--69290609 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
69290566 AGCTTGCATT
69290576 TGAAAAACCGAAG-A
1 TGAAAAACCGAAGCA
*
69290590 TGAAAAACTGAAGCA
1 TGAAAAACCGAAGCA
69290605 TGAAA
1 TGAAA
69290610 TTCAATGTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.56, C:0.12, G:0.21, T:0.12
Consensus pattern (15 bp):
TGAAAAACCGAAGCA
Found at i:69299022 original size:47 final size:47
Alignment explanation
Indices: 69298964--69299072 Score: 218
Period size: 47 Copynumber: 2.3 Consensus size: 47
69298954 CAGCCAAGAC
69298964 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
69299011 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
69299058 AGTGTATATATGTGA
1 AGTGTATATATGTGA
69299073 ATGTGAAAGT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 62 1.00
ACGTcount: A:0.32, C:0.07, G:0.29, T:0.31
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:69299075 original size:22 final size:22
Alignment explanation
Indices: 69299048--69299094 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
69299038 GCCGATGTGA
69299048 TGAATGTGAAAGTGTATATATG
1 TGAATGTGAAAGTGTATATATG
69299070 TGAATGTGAAAGTGTATATATG
1 TGAATGTGAAAGTGTATATATG
69299092 TGA
1 TGA
69299095 TAAGGCCTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.28, T:0.36
Consensus pattern (22 bp):
TGAATGTGAAAGTGTATATATG
Found at i:69299084 original size:69 final size:69
Alignment explanation
Indices: 69299001--69299141 Score: 273
Period size: 69 Copynumber: 2.0 Consensus size: 69
69298991 GCCGATGTGA
*
69299001 TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATA
69299066 TATG
66 TATG
69299070 TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATA
1 TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATA
69299135 TATG
66 TATG
69299139 TGA
1 TGA
69299142 TAAGGCCTAA
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 71 1.00
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32
Consensus pattern (69 bp):
TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATA
TATG
Done.