Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 213 of 356
Found at i:69515236 original size:9 final size:9
Alignment explanation
Indices: 69515219--69515248 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
69515209 GTTCATGGAT
*
69515219 TGAATTGAA
1 TGAAATGAA
69515228 TGAAATGAA
1 TGAAATGAA
69515237 TGAAATGAA
1 TGAAATGAA
69515246 TGA
1 TGA
69515249 TTGAATGGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.23, T:0.27
Consensus pattern (9 bp):
TGAAATGAA
Found at i:69516926 original size:19 final size:19
Alignment explanation
Indices: 69516902--69516939 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
69516892 ATATCTGTGA
69516902 TTCTGTATTGTCT-GTAATG
1 TTCTGTATT-TCTGGTAATG
*
69516921 TTCTGTCTTTCTGGTAATG
1 TTCTGTATTTCTGGTAATG
69516940 CCCCTTACCT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 3 0.18
19 14 0.82
ACGTcount: A:0.13, C:0.13, G:0.21, T:0.53
Consensus pattern (19 bp):
TTCTGTATTTCTGGTAATG
Found at i:69527663 original size:66 final size:66
Alignment explanation
Indices: 69527582--69527714 Score: 266
Period size: 66 Copynumber: 2.0 Consensus size: 66
69527572 ACTTGTGTGA
69527582 GCAGACCCATTGATAGCTCGAGAGTGAGCATTATATGAGATATGAGATTGAGATAGCTTCGACTA
1 GCAGACCCATTGATAGCTCGAGAGTGAGCATTATATGAGATATGAGATTGAGATAGCTTCGACTA
69527647 T
66 T
69527648 GCAGACCCATTGATAGCTCGAGAGTGAGCATTATATGAGATATGAGATTGAGATAGCTTCGACTA
1 GCAGACCCATTGATAGCTCGAGAGTGAGCATTATATGAGATATGAGATTGAGATAGCTTCGACTA
69527713 T
66 T
69527714 G
1 G
69527715 TATTGACACT
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 67 1.00
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.27
Consensus pattern (66 bp):
GCAGACCCATTGATAGCTCGAGAGTGAGCATTATATGAGATATGAGATTGAGATAGCTTCGACTA
T
Found at i:69529647 original size:46 final size:46
Alignment explanation
Indices: 69529597--69529772 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
69529587 TGGTTGAGCA
69529597 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* *
69529643 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGT-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA-T--G
* * * *
69529688 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* * *
69529736 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69529773 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 6 0.05
45 3 0.03
46 63 0.57
47 28 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
Found at i:69529753 original size:93 final size:93
Alignment explanation
Indices: 69529594--69529765 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
69529584 GGATGGTTGA
* * *
69529594 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
69529659 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
69529687 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
69529752 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
69529766 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:69538882 original size:12 final size:11
Alignment explanation
Indices: 69538852--69538881 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
69538842 TATACAAGTT
69538852 AAAAAAAATCC
1 AAAAAAAATCC
69538863 AAAAAAAATCC
1 AAAAAAAATCC
69538874 AAAAAAAA
1 AAAAAAAA
69538882 AGGAAGTGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.80, C:0.13, G:0.00, T:0.07
Consensus pattern (11 bp):
AAAAAAAATCC
Found at i:69541608 original size:40 final size:40
Alignment explanation
Indices: 69541530--69541753 Score: 292
Period size: 40 Copynumber: 5.5 Consensus size: 40
69541520 ACCCAAGTAT
* *
69541530 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * **
69541569 CTTCGGGTCTTAGCCTGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
69541609 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
69541649 CTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* * *
69541692 CTTTGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
69541732 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
69541754 CATCCGAATA
Statistics
Matches: 162, Mismatches: 16, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
39 12 0.07
40 114 0.70
41 1 0.01
43 35 0.22
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:69541716 original size:83 final size:80
Alignment explanation
Indices: 69541530--69541753 Score: 292
Period size: 83 Copynumber: 2.8 Consensus size: 80
69541520 ACCCAAGTAT
* * * *
69541530 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGCCTTCGGGTCTTAGCCTGGATATAG
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
**
69541593 TCACTAGCATGAATGC
65 TCACTAGCACAAATGC
*
69541609 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
69541673 CAACTACTCGCACAAATGC
66 C-ACTA---GCACAAATGC
* * *
69541692 CTTTGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
69541754 CATCCGAATA
Statistics
Matches: 128, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
79 13 0.10
80 48 0.38
81 1 0.01
83 66 0.52
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:69550343 original size:34 final size:34
Alignment explanation
Indices: 69550300--69550402 Score: 116
Period size: 37 Copynumber: 2.9 Consensus size: 34
69550290 TTTTAATTAA
69550300 ACTCATTTTAGTTAATTGAGTTGCTGGAATAAAT
1 ACTCATTTTAGTTAATTGAGTTGCTGGAATAAAT
*
69550334 ACTCATTTTAGTTATTAATTGAGTTGCTAGAATAAAT
1 ACTCATTTTAG---TTAATTGAGTTGCTGGAATAAAT
* * * * * *
69550371 GCTTATCTTAGTTAATTTAGATGTTGGAATAA
1 ACTCATTTTAGTTAATTGAGTTGCTGGAATAA
69550403 TTTATTGTTA
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
34 28 0.48
37 30 0.52
ACGTcount: A:0.33, C:0.08, G:0.17, T:0.43
Consensus pattern (34 bp):
ACTCATTTTAGTTAATTGAGTTGCTGGAATAAAT
Found at i:69550459 original size:9 final size:9
Alignment explanation
Indices: 69550447--69550505 Score: 64
Period size: 9 Copynumber: 6.4 Consensus size: 9
69550437 AGTTAATTAA
*
69550447 GTTTAATAT
1 GTTTAATGT
69550456 GTTTAATGT
1 GTTTAATGT
*
69550465 GCTTAATGT
1 GTTTAATGT
* *
69550474 GCTTAAAGT
1 GTTTAATGT
*
69550483 GTTTAATTT
1 GTTTAATGT
69550492 GTTTTAATGT
1 G-TTTAATGT
69550502 GTTT
1 GTTT
69550506 GTTAATGAAT
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
9 34 0.81
10 8 0.19
ACGTcount: A:0.24, C:0.03, G:0.19, T:0.54
Consensus pattern (9 bp):
GTTTAATGT
Found at i:69554477 original size:37 final size:37
Alignment explanation
Indices: 69554427--69554505 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
69554417 TTATTACGAA
* * *
69554427 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
69554464 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
69554501 GTCTT
1 GTCTT
69554506 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:69554702 original size:47 final size:47
Alignment explanation
Indices: 69554624--69554940 Score: 501
Period size: 47 Copynumber: 6.7 Consensus size: 47
69554614 CCCTTCGGGA
* * * * * * *
69554624 CTTATCACATTTATACACTTTGACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
69554671 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69554718 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69554765 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69554812 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
69554859 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
69554906 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
69554941 AGAATCCTAA
Statistics
Matches: 254, Mismatches: 15, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
46 1 0.00
47 253 1.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:69560753 original size:43 final size:41
Alignment explanation
Indices: 69560704--69560795 Score: 105
Period size: 42 Copynumber: 2.2 Consensus size: 41
69560694 TCCGAGACGT
*
69560704 GGTCTTACATGTAATCAAACATCGATGCC-ACTGTCCCAAACA
1 GGTCTTACATGAAATCAAACA-CGATGCCGA-TGTCCCAAACA
* * * *
69560746 GGATCTTACATGAAATTAGATACGATGCCGATGTCCCAGACA
1 GG-TCTTACATGAAATCAAACACGATGCCGATGTCCCAAACA
69560788 GGTCTTAC
1 GGTCTTAC
69560796 GCGTAAAATA
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
41 6 0.14
42 21 0.49
43 16 0.37
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (41 bp):
GGTCTTACATGAAATCAAACACGATGCCGATGTCCCAAACA
Found at i:69562404 original size:11 final size:12
Alignment explanation
Indices: 69562378--69562411 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
69562368 GGACAAGGGC
69562378 AAAGGCAAAGGA
1 AAAGGCAAAGGA
69562390 AAAGGCAAA-GA
1 AAAGGCAAAGGA
*
69562401 AAAGGCTAAGG
1 AAAGGCAAAGG
69562412 CTAAGGCTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.56, C:0.09, G:0.32, T:0.03
Consensus pattern (12 bp):
AAAGGCAAAGGA
Found at i:69567612 original size:140 final size:138
Alignment explanation
Indices: 69567334--69567739 Score: 634
Period size: 140 Copynumber: 2.9 Consensus size: 138
69567324 GAGAACATAG
* *
69567334 ATATAATTAATATATAAATTTGATTCATGCAAAATATTAATTGTATATATTTTACCAAATTTATT
1 ATATAATTAATATATAAATTTGATTCATACAAAATATTAATTGTATATATTTTACTAAATTTATT
* * ** * * *
69567399 AACATAAATAGTTATATTAATT-ATTTTTTTCAAAATGTAAAAGACATGGAAATTAATATTATTT
66 AATATAAACAGTTATATTAATTAATTTTGGTCAAAATATAAAAGACATGGAAATTAATATTCTTA
69567463 TGGAAAGA
131 TGGAAAGA
* *
69567471 ATATAATTAATATATTAATTTGATTCATACAAAATATTAATTGTATTTATATTTTACTGAATTTA
1 ATATAATTAATATATAAATTTGATTCATACAAAATATTAATTGTA--TATATTTTACTAAATTTA
*
69567536 TTAATATAAACAGTTATATTAATTAATTTTGGTCAAAATATAAAAGAAATGGAAATTAATATTCT
64 TTAATATAAACAGTTATATTAATTAATTTTGGTCAAAATATAAAAGACATGGAAATTAATATTCT
69567601 TATGGAAAGA
129 TATGGAAAGA
* *
69567611 ATATAATTAATATATGAATTTGATTCATACAAAATGTTAATTGTATATATTTTACTAAATTTATT
1 ATATAATTAATATATAAATTTGATTCATACAAAATATTAATTGTATATATTTTACTAAATTTATT
* * *
69567676 AATATAAACAGTTATATTAATGAAGTTTGGTCAAAATATAAAAGACATAGAAATTAATATTCTT
66 AATATAAACAGTTATATTAATTAATTTTGGTCAAAATATAAAAGACATGGAAATTAATATTCTT
69567740 TTAGATATAA
Statistics
Matches: 247, Mismatches: 19, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
137 43 0.17
138 79 0.32
139 38 0.15
140 87 0.35
ACGTcount: A:0.45, C:0.05, G:0.08, T:0.42
Consensus pattern (138 bp):
ATATAATTAATATATAAATTTGATTCATACAAAATATTAATTGTATATATTTTACTAAATTTATT
AATATAAACAGTTATATTAATTAATTTTGGTCAAAATATAAAAGACATGGAAATTAATATTCTTA
TGGAAAGA
Found at i:69567752 original size:138 final size:137
Alignment explanation
Indices: 69567334--69567756 Score: 630
Period size: 138 Copynumber: 3.1 Consensus size: 137
69567324 GAGAACATAG
* *
69567334 ATATAATTAATATATAAATTTGATTCATGCAAAATATTAATTGTATATATTTTACCAAATTTATT
1 ATATAATTAATATATAAATTTGATTCATACAAAATATTAATTGTATATATTTTACTAAATTTATT
* * * ** * *
69567399 AACATAAATAGTTATATTAATTATTTTTTTCAAAATGTAAAAGACATGGAAATTAATATTATTTT
66 AATATAAACAGTTATATTAATAATTTTGGTCAAAATATAAAAGACATGGAAATTAATATTCTTTT
69567464 GGAAAGA
131 GGAAAGA
* *
69567471 ATATAATTAATATATTAATTTGATTCATACAAAATATTAATTGTATTTATATTTTACTGAATTTA
1 ATATAATTAATATATAAATTTGATTCATACAAAATATTAATTGTA--TATATTTTACTAAATTTA
*
69567536 TTAATATAAACAGTTATATTAATTAATTTTGGTCAAAATATAAAAGAAATGGAAATTAATATTCT
64 TTAATATAAACAGTTATATTAA-TAATTTTGGTCAAAATATAAAAGACATGGAAATTAATATTCT
*
69567601 TATGGAAAGA
128 TTTGGAAAGA
* *
69567611 ATATAATTAATATATGAATTTGATTCATACAAAATGTTAATTGTATATATTTTACTAAATTTATT
1 ATATAATTAATATATAAATTTGATTCATACAAAATATTAATTGTATATATTTTACTAAATTTATT
* *
69567676 AATATAAACAGTTATATTAATGAAGTTTGGTCAAAATATAAAAGACATAGAAATTAATATTCTTT
66 AATATAAACAGTTATATTAAT-AATTTTGGTCAAAATATAAAAGACATGGAAATTAATATTCTTT
* * *
69567741 TAGATATA
130 TGGAAAGA
69567749 ATATAATT
1 ATATAATT
69567757 CATTTTTCCA
Statistics
Matches: 259, Mismatches: 23, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
137 44 0.17
138 91 0.35
139 36 0.14
140 88 0.34
ACGTcount: A:0.45, C:0.05, G:0.08, T:0.42
Consensus pattern (137 bp):
ATATAATTAATATATAAATTTGATTCATACAAAATATTAATTGTATATATTTTACTAAATTTATT
AATATAAACAGTTATATTAATAATTTTGGTCAAAATATAAAAGACATGGAAATTAATATTCTTTT
GGAAAGA
Found at i:69571129 original size:27 final size:27
Alignment explanation
Indices: 69571099--69571188 Score: 103
Period size: 27 Copynumber: 3.3 Consensus size: 27
69571089 TTTAGTTTAC
69571099 TAAAATTA-TCGAAATACGCTTAG-TTTG
1 TAAAATTACT-GAAATAC-CTTAGATTTG
* * *
69571126 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCTTAGATTTG
* *
69571153 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACTGAAATACCTTAGATTTG
69571180 TAAAATTAC
1 TAAAATTAC
69571189 CAAAGTACCC
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
26 3 0.05
27 51 0.93
28 1 0.02
ACGTcount: A:0.40, C:0.16, G:0.11, T:0.33
Consensus pattern (27 bp):
TAAAATTACTGAAATACCTTAGATTTG
Found at i:69571197 original size:27 final size:27
Alignment explanation
Indices: 69571123--69571188 Score: 105
Period size: 27 Copynumber: 2.4 Consensus size: 27
69571113 TACGCTTAGT
* *
69571123 TTGTAAAAATACTGAAATACCCTCGAT
1 TTGTAAAATTACTGAAATACCCTCGAC
*
69571150 TTGTAAAATTACTGAAATACCTTCGAC
1 TTGTAAAATTACTGAAATACCCTCGAC
69571177 TTGTAAAATTAC
1 TTGTAAAATTAC
69571189 CAAAGTACCC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.33
Consensus pattern (27 bp):
TTGTAAAATTACTGAAATACCCTCGAC
Found at i:69571378 original size:27 final size:27
Alignment explanation
Indices: 69571194--69571377 Score: 217
Period size: 27 Copynumber: 6.8 Consensus size: 27
69571184 ATTACCAAAG
*
69571194 TACCCCCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
69571221 TACCCCCGATTTACATAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
69571248 TAACCC-CGATTTACATAATTACCATTT
1 T-ACCCTCGATTTACAGAATTACCATTT
* *
69571275 TACCCTTGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* * * *
69571302 TACCCTCGACTTACAGAAGTATCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* * **
69571329 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
69571356 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
69571378 TAGAATACCT
Statistics
Matches: 138, Mismatches: 17, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
26 4 0.03
27 130 0.94
28 4 0.03
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.38
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:69571427 original size:27 final size:26
Alignment explanation
Indices: 69571370--69571546 Score: 185
Period size: 27 Copynumber: 6.7 Consensus size: 26
69571360 CTCGATTTAC
* *
69571370 AAAATTACTAGAATACCTTAGTTTGT
1 AAAATTACCAAAATACCTTAGTTTGT
* * *
69571396 AAAATTGCTAAAATACCATTGGTTTGT
1 AAAATTACCAAAATACC-TTAGTTTGT
* *
69571423 AAAATTA-CAGAAATACCCTCAATTTGT
1 AAAATTACCA-AAATA-CCTTAGTTTGT
*
69571450 AAAATTACCAAAATACCCTAGTTTGT
1 AAAATTACCAAAATACCTTAGTTTGT
* *
69571476 AAAATTACCAAAATACCACTGGTTTGT
1 AAAATTACCAAAATACC-TTAGTTTGT
* * *
69571503 GAAATTACCGAAATACCTTTAATTTGT
1 AAAATTACCAAAATACC-TTAGTTTGT
69571530 AAAATTACCAAAATACC
1 AAAATTACCAAAATACC
69571547 CCTAATTTAC
Statistics
Matches: 126, Mismatches: 20, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
26 41 0.33
27 81 0.64
28 4 0.03
ACGTcount: A:0.42, C:0.16, G:0.10, T:0.32
Consensus pattern (26 bp):
AAAATTACCAAAATACCTTAGTTTGT
Found at i:69571474 original size:53 final size:53
Alignment explanation
Indices: 69571370--69571547 Score: 198
Period size: 53 Copynumber: 3.3 Consensus size: 53
69571360 CTCGATTTAC
* * * * * *
69571370 AAAATTACTAGAATACCTTAGTTTGTAAAATTGCTAAAATACCATTGGTTTGT
1 AAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAATACCATTAGTTTGT
* *
69571423 AAAATTA-CAGAAATACCCTCAATTTGTAAAATTACCAAAATACC-CTAGTTTGT
1 AAAATTACCA-AAATACCCT-AGTTTGTAAAATTACCAAAATACCATTAGTTTGT
* * * * *
69571476 AAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACCTTTAATTTGT
1 AAAATTACCAAAATACC-CTAGTTTGTAAAATTACCAAAATACCATTAGTTTGT
69571530 AAAATTACCAAAATACCC
1 AAAATTACCAAAATACCC
69571548 CTAATTTACA
Statistics
Matches: 106, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
52 1 0.01
53 56 0.53
54 49 0.46
ACGTcount: A:0.42, C:0.17, G:0.10, T:0.32
Consensus pattern (53 bp):
AAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAATACCATTAGTTTGT
Found at i:69571478 original size:80 final size:80
Alignment explanation
Indices: 69571356--69571547 Score: 267
Period size: 80 Copynumber: 2.4 Consensus size: 80
69571346 ATTACTGTTT
* ** * * * * * *
69571356 TACCCTCGATTTACAAAATTACTAGAATACCTTAGTTTGTAAAATTGCTAAAATACCATTGGTTT
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAATACCACTGGTTT
69571421 GTAAAATTACAGAAA
66 GTAAAATTACAGAAA
69571436 TACCCTCAATTTGTAAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAATACCACTGGTTT
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAATACCACTGGTTT
* *
69571501 GTGAAATTACCGAAA
66 GTAAAATTACAGAAA
* *
69571516 TACCTTTAATTTGTAAAATTACCAAAATACCC
1 TACCCTCAATTTGTAAAATTACCAAAATACCC
69571548 CTAATTTACA
Statistics
Matches: 99, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
80 99 1.00
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.32
Consensus pattern (80 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAATACCACTGGTTT
GTAAAATTACAGAAA
Found at i:69571570 original size:54 final size:52
Alignment explanation
Indices: 69571418--69571575 Score: 144
Period size: 54 Copynumber: 3.0 Consensus size: 52
69571408 ATACCATTGG
*
69571418 TTTGTAAAATTA-CAGAAATA-CCCTCAATTTGTA-AAATTACCA-AAATACCCTAG
1 TTTGTAAAATTACCA-AAATACCCCT-AA-TT-TACAAATTA-CAGAAATACCCTAA
* ** ** * *
69571471 TTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACCTTTAA
1 TTTGTAAAATTACCAAAATACCCCTAATTT-ACAAATTACAGAAATACC-CTAA
69571525 TTTGTAAAATTACCAAAATACCCCTAATTTACAAAGTTACAGAAATACCCT
1 TTTGTAAAATTACCAAAATACCCCTAATTTACAAA-TTACAGAAATACCCT
69571576 TGACTTTCTA
Statistics
Matches: 84, Mismatches: 14, Indels: 14
0.75 0.12 0.12
Matches are distributed among these distances:
51 1 0.01
52 3 0.04
53 34 0.40
54 46 0.55
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (52 bp):
TTTGTAAAATTACCAAAATACCCCTAATTTACAAATTACAGAAATACCCTAA
Found at i:69571721 original size:27 final size:27
Alignment explanation
Indices: 69571691--69571782 Score: 114
Period size: 27 Copynumber: 3.4 Consensus size: 27
69571681 ACCCCTATTA
* *
69571691 GGTAAAAAGACTGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
69571718 GGTAAAGTGACCGTAAAGCCCTTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
69571745 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
69571772 GGTAAAATGAC
1 GGTAAAATGAC
69571783 GAATATGCCC
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
27 56 0.98
28 1 0.02
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:69573036 original size:9 final size:9
Alignment explanation
Indices: 69573024--69573080 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
69573014 TTTGATAAAC
69573024 ATGATATGT
1 ATGATATGT
*
69573033 ATGATATGCAC
1 ATGATATG--T
*
69573044 ATGACATGT
1 ATGATATGT
*
69573053 ATGATATGCAC
1 ATGATATG--T
69573064 ATGATATGT
1 ATGATATGT
69573073 ATGATATG
1 ATGATATG
69573081 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:69573047 original size:20 final size:20
Alignment explanation
Indices: 69573022--69573092 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
69573012 ATTTTGATAA
69573022 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
69573042 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
69573062 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
69573082 ACATGAGATGT
1 ACATGATATGT
69573093 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:69573069 original size:11 final size:11
Alignment explanation
Indices: 69573033--69573087 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
69573023 CATGATATGT
69573033 ATGATATGCAC
1 ATGATATGCAC
* *
69573044 ATGACATG--T
1 ATGATATGCAC
69573053 ATGATATGCAC
1 ATGATATGCAC
*
69573064 ATGATATG--T
1 ATGATATGCAC
69573073 ATGATATGCAC
1 ATGATATGCAC
69573084 ATGA
1 ATGA
69573088 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:69573264 original size:25 final size:23
Alignment explanation
Indices: 69573139--69573355 Score: 281
Period size: 23 Copynumber: 9.1 Consensus size: 23
69573129 AGGAAGTGCA
69573139 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
69573162 AAAGGGTTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
69573185 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
69573208 AAAGGGCTTATGCCCTAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
69573231 AAAGGGCTTATGCCCCAATTATGAT
1 AAAGGGCTTATGCCCCAGTTAT--T
69573256 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT--T
* *
69573281 GAAGGGCTTATGCCCCAGTTACGAT
1 AAAGGGCTTATGCCCCAGTTA--TT
* * *
69573306 AAATGGCTTATGCACCAGTTATAA
1 AAAGGGCTTATGCCCCAGTTAT-T
* *
69573330 AAAGGGCTTTTGCCCCAGTTACT
1 AAAGGGCTTATGCCCCAGTTATT
69573353 AAA
1 AAA
69573356 AGAGGCTAGG
Statistics
Matches: 171, Mismatches: 18, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
23 89 0.52
24 18 0.11
25 64 0.37
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:69573605 original size:31 final size:31
Alignment explanation
Indices: 69573567--69573625 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
69573557 TACGTTTACA
69573567 GTAAAGGCTTCGGCCCAGTAATATGAAATAT
1 GTAAAGGCTTCGGCCCAGTAATATGAAATAT
**
69573598 GTAAAGGCTTCGGCCCAGTGTTATGAAA
1 GTAAAGGCTTCGGCCCAGTAATATGAAA
69573626 AATGAAATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.25
Consensus pattern (31 bp):
GTAAAGGCTTCGGCCCAGTAATATGAAATAT
Found at i:69580760 original size:15 final size:15
Alignment explanation
Indices: 69580717--69580761 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
69580707 GGTATTGTAA
**
69580717 CTTGGATTTCTGAAT
1 CTTGGATTTCTTTAT
69580732 CTTGGGAGTTTCTTTAT
1 CTT-GGA-TTTCTTTAT
69580749 CTTGGATTTCTTT
1 CTTGGATTTCTTT
69580762 GTCTCGGACT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
15 10 0.38
16 6 0.23
17 10 0.38
ACGTcount: A:0.13, C:0.13, G:0.20, T:0.53
Consensus pattern (15 bp):
CTTGGATTTCTTTAT
Found at i:69585788 original size:68 final size:64
Alignment explanation
Indices: 69585541--69585793 Score: 183
Period size: 68 Copynumber: 3.9 Consensus size: 64
69585531 CATAATTTTG
* * * * * * *
69585541 GCTCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGCCAC-T-TCATCTCGT
1 GCTCTCTTGT-CTACATGATGTACACATAGCACCACACATGCGACCTAGCTACATAT-ATCTCGT
69585603 A
64 A
* * * * * *
69585604 GCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACGCATGCGACCTAGCTACATATATCTCG
1 GCTCTCTTGTCTACATGATG---TACACATAGCACCACACATGCGACCTAGCTACATATATCTCG
69585669 TA
63 TA
* * * * *
69585671 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACTTAGCTACATCATAATGTCTC
1 GCTCTCTTGTCTACATGATGTACACATAGCACCACACATGCGACCTAGCTACAT-AT-A--TCTC
69585736 GTA
62 GTA
* * *
69585739 GCTCTCTTGTAC-ACATGATGTGCAC-TCAGCACCATACATGTGACCTAGCTACATA
1 GCTCTCTTGT-CTACATGATGTACACAT-AGCACCACACATGCGACCTAGCTACATA
69585794 CCATCTGTAT
Statistics
Matches: 155, Mismatches: 23, Indels: 20
0.78 0.12 0.10
Matches are distributed among these distances:
62 1 0.01
63 18 0.12
64 27 0.17
65 2 0.01
66 25 0.16
67 31 0.20
68 50 0.32
69 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.30
Consensus pattern (64 bp):
GCTCTCTTGTCTACATGATGTACACATAGCACCACACATGCGACCTAGCTACATATATCTCGTA
Found at i:69594194 original size:23 final size:23
Alignment explanation
Indices: 69594152--69594264 Score: 97
Period size: 23 Copynumber: 4.8 Consensus size: 23
69594142 CAGCTTGTAA
* *
69594152 GAGCTTACTATTTTTAGCTCATTG
1 GAGCTTACT-GTTTCAGCTCATTG
* *
69594176 GAGTTTACTGTTTCAGCTCGTAT-
1 GAGCTTACTGTTTCAGCTCAT-TG
69594199 GAGCTTACTG-TTCAGCTCGA-TG
1 GAGCTTACTGTTTCAGCTC-ATTG
* * *
69594221 GAGCTTACCGTTTCAGCTCAATA
1 GAGCTTACTGTTTCAGCTCATTG
69594244 GAGCTTACTGTTCATCAGCTC
1 GAGCTTACTGTT--TCAGCTC
69594265 GAGAGGAGCC
Statistics
Matches: 73, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
21 1 0.01
22 18 0.25
23 38 0.52
24 9 0.12
25 7 0.10
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.37
Consensus pattern (23 bp):
GAGCTTACTGTTTCAGCTCATTG
Found at i:69594215 original size:22 final size:23
Alignment explanation
Indices: 69594180--69594266 Score: 106
Period size: 23 Copynumber: 3.7 Consensus size: 23
69594170 TCATTGGAGT
69594180 TTACTGTTTCAGCTCG-TATGAGC
1 TTACTGTTTCAGCTCGATA-GAGC
*
69594203 TTACTG-TTCAGCTCGATGGAGC
1 TTACTGTTTCAGCTCGATAGAGC
* *
69594225 TTACCGTTTCAGCTCAATAGAGC
1 TTACTGTTTCAGCTCGATAGAGC
69594248 TTACTGTTCATCAGCTCGA
1 TTACTGTT--TCAGCTCGA
69594267 GAGGAGCCTA
Statistics
Matches: 54, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
22 18 0.33
23 28 0.52
25 8 0.15
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (23 bp):
TTACTGTTTCAGCTCGATAGAGC
Found at i:69594234 original size:45 final size:45
Alignment explanation
Indices: 69594116--69594257 Score: 128
Period size: 45 Copynumber: 3.0 Consensus size: 45
69594106 AGACTCACCA
* * *
69594116 CAGCTCG-TAGGAGCTTACCGATATATCAGCTTGTAAGAGCTTACTATTTT
1 CAGCTCGAT-GGAGCTTACCG-T-T-TCAGCTCGTATGAGCTTAC--TGTT
* * *
69594166 TAGCTC-ATTGGAGTTTACTGTTTCAGCTCGTATGAGCTTACTGTT
1 CAGCTCGA-TGGAGCTTACCGTTTCAGCTCGTATGAGCTTACTGTT
*
69594211 CAGCTCGATGGAGCTTACCGTTTCAGCTC-AATAGAGCTTACTGTT
1 CAGCTCGATGGAGCTTACCGTTTCAGCTCGTAT-GAGCTTACTGTT
69594256 CA
1 CA
69594258 TCAGCTCGAG
Statistics
Matches: 78, Mismatches: 10, Indels: 13
0.77 0.10 0.13
Matches are distributed among these distances:
44 2 0.03
45 41 0.53
46 1 0.01
47 17 0.22
48 1 0.01
49 1 0.01
50 14 0.18
51 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.35
Consensus pattern (45 bp):
CAGCTCGATGGAGCTTACCGTTTCAGCTCGTATGAGCTTACTGTT
Found at i:69597432 original size:27 final size:28
Alignment explanation
Indices: 69597348--69597445 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
69597338 CATGAGATTG
* * * *
69597348 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
69597377 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
69597405 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
69597432 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
69597446 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:69597456 original size:27 final size:27
Alignment explanation
Indices: 69597376--69597458 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
69597366 TAAATTGTAC
* *
69597376 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
69597404 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
69597431 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
69597458 A
1 A
69597459 CTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:69599267 original size:19 final size:19
Alignment explanation
Indices: 69599229--69599267 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
69599219 TAAAATGTTG
* *
69599229 AAATTTTTCTAAGTTTCCA
1 AAATTTTTATAAGTTACCA
*
69599248 AAATTTTTATATGTTACCA
1 AAATTTTTATAAGTTACCA
69599267 A
1 A
69599268 TTTAGTCTTG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.36, C:0.13, G:0.05, T:0.46
Consensus pattern (19 bp):
AAATTTTTATAAGTTACCA
Found at i:69600395 original size:29 final size:28
Alignment explanation
Indices: 69600356--69600421 Score: 80
Period size: 28 Copynumber: 2.3 Consensus size: 28
69600346 CTTCAGATCC
*
69600356 TGCCACGAAGGCATT-CATTTTAACAGAGTT
1 TGCCAC-AAGGCATTCCA--TTAACAGAGAT
69600386 TGCCACAAGGCATTCCATTAACAGAGAT
1 TGCCACAAGGCATTCCATTAACAGAGAT
*
69600414 GGCCACAA
1 TGCCACAA
69600422 AGACATCCTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
28 17 0.52
29 8 0.24
30 8 0.24
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.23
Consensus pattern (28 bp):
TGCCACAAGGCATTCCATTAACAGAGAT
Found at i:69600411 original size:28 final size:28
Alignment explanation
Indices: 69600356--69600639 Score: 88
Period size: 29 Copynumber: 9.8 Consensus size: 28
69600346 CTTCAGATCC
*
69600356 TGCCACGAAGGCATTCATTTTAACAGAGTT
1 TGCCAC-AAGGCATTCA-TTTAACAGAGAT
69600386 TGCCACAAGGCATTCCA-TTAACAGAGAT
1 TGCCACAAGGCATT-CATTTAACAGAGAT
* * * * * *
69600414 GGCCACAAAGACATCCTTTTAACACAAAT
1 TGCCAC-AAGGCATTCATTTAACAGAGAT
* * * **
69600443 AGCCATAAAGACATTCATTTAATTGAGAT
1 TGCCA-CAAGGCATTCATTTAACAGAGAT
* * * * *
69600472 AGCCACAAAGGCATCCTTTTAACAAAAAT
1 TGCCAC-AAGGCATTCATTTAACAGAGAT
* * ** ***
69600501 CGCCAGAAAATCATTCATTTAATTTAGAT
1 TGCCA-CAAGGCATTCATTTAACAGAGAT
*** * * *
69600530 AATCACAAAGGCATACATTCAATAGAGAT
1 TGCCAC-AAGGCATTCATTTAACAGAGAT
* * * *
69600559 CGCTAAAAAGGCATTCATATAACTA-AGAT
1 TGC-CACAAGGCATTCATTTAAC-AGAGAT
* *
69600588 AGCCACAAAGGC-TTCCTTATAACAGAGAT
1 TGCCAC-AAGGCATTCATT-TAACAGAGAT
**
69600617 CACCACAAAGGCATTCATTTAAC
1 TGCCAC-AAGGCATTCATTTAAC
69600640 TAAGATTTCC
Statistics
Matches: 181, Mismatches: 60, Indels: 27
0.68 0.22 0.10
Matches are distributed among these distances:
28 22 0.12
29 144 0.80
30 15 0.08
ACGTcount: A:0.40, C:0.21, G:0.14, T:0.25
Consensus pattern (28 bp):
TGCCACAAGGCATTCATTTAACAGAGAT
Found at i:69600447 original size:29 final size:29
Alignment explanation
Indices: 69600415--69600505 Score: 92
Period size: 29 Copynumber: 3.1 Consensus size: 29
69600405 AACAGAGATG
*
69600415 GCCACAAAGACATCCTTTTAACACAAATA
1 GCCACAAAGACATCCTTTTAACAAAAATA
* * * *** *
69600444 GCCATAAAGACATTCATTTAATTGAGATA
1 GCCACAAAGACATCCTTTTAACAAAAATA
* *
69600473 GCCACAAAGGCATCCTTTTAACAAAAATC
1 GCCACAAAGACATCCTTTTAACAAAAATA
69600502 GCCA
1 GCCA
69600506 GAAAATCATT
Statistics
Matches: 46, Mismatches: 16, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
29 46 1.00
ACGTcount: A:0.42, C:0.24, G:0.11, T:0.23
Consensus pattern (29 bp):
GCCACAAAGACATCCTTTTAACAAAAATA
Found at i:69600523 original size:58 final size:57
Alignment explanation
Indices: 69600409--69600638 Score: 208
Period size: 58 Copynumber: 4.0 Consensus size: 57
69600399 TCCATTAACA
* * * * *
69600409 GAGATGGCCACAAAGACATCCTTTTAACACAAATAGCCATAAAGACATTCATTTAATT
1 GAGATAGCCACAAAGGCATCCTTTTAACAGAAATCGCCAAAAAG-CATTCATTTAATT
* *
69600467 GAGATAGCCACAAAGGCATCCTTTTAACAAAAATCGCCAGAAAATCATTCATTTAATT
1 GAGATAGCCACAAAGGCATCCTTTTAACAGAAATCGCCA-AAAAGCATTCATTTAATT
* ** * * * * * * * *
69600525 TAGATAATCACAAAGGCATACATTCAATAGAGATCGCTAAAAAGGCATTCATATAACT
1 GAGATAGCCACAAAGGCATCCTTTTAACAGAAATCGCCAAAAA-GCATTCATTTAATT
* * * * * *
69600583 AAGATAGCCACAAAGGCTTCCTTATAACAGAGATCACCACAAAGGCATTCATTTAA
1 GAGATAGCCACAAAGGCATCCTTTTAACAGAAATCGCCA-AAAAGCATTCATTTAA
69600639 CTAAGATTTC
Statistics
Matches: 137, Mismatches: 32, Indels: 6
0.78 0.18 0.03
Matches are distributed among these distances:
57 4 0.03
58 127 0.93
59 6 0.04
ACGTcount: A:0.42, C:0.20, G:0.13, T:0.24
Consensus pattern (57 bp):
GAGATAGCCACAAAGGCATCCTTTTAACAGAAATCGCCAAAAAGCATTCATTTAATT
Found at i:69600587 original size:29 final size:29
Alignment explanation
Indices: 69600533--69600677 Score: 102
Period size: 29 Copynumber: 5.0 Consensus size: 29
69600523 TTTAGATAAT
*
69600533 CACAAAGGCATACAT-TCAA-TAGAGATCGC
1 CACAAAGGCATTCATAT-AACTA-AGATCGC
* * *
69600562 TAAAAAGGCATTCATATAACTAAGATAGC
1 CACAAAGGCATTCATATAACTAAGATCGC
* *
69600591 CACAAAGGC-TTCCTTATAAC-AGAGATCAC
1 CACAAAGGCATT-CATATAACTA-AGATCGC
* **
69600620 CACAAAGGCATTCATTTAACTAAGATTTC
1 CACAAAGGCATTCATATAACTAAGATCGC
* * *
69600649 CATAAAGGC-TTCGTTATAACTGAGATCGC
1 CACAAAGGCATTC-ATATAACTAAGATCGC
69600678 TATATATGCT
Statistics
Matches: 90, Mismatches: 19, Indels: 14
0.73 0.15 0.11
Matches are distributed among these distances:
28 6 0.07
29 78 0.87
30 6 0.07
ACGTcount: A:0.39, C:0.21, G:0.15, T:0.24
Consensus pattern (29 bp):
CACAAAGGCATTCATATAACTAAGATCGC
Found at i:69600640 original size:58 final size:58
Alignment explanation
Indices: 69600388--69600675 Score: 190
Period size: 58 Copynumber: 5.0 Consensus size: 58
69600378 ACAGAGTTTG
* * * * * *
69600388 CCAC-AAGGCATTCCA-TTAAC-AGAGATGGCCACAAAGACATCCTTTTAACACAAAT-A
1 CCACAAAGGCATT-CATTTAACTA-AGATAGCCACAAAGGCTTCCTTATAACAGAGATCA
* * * * * * * * *
69600444 GCCATAAAGACATTCATTTAATTGAGATAGCCACAAAGGCATCCTTTTAACAAAAATCG
1 -CCACAAAGGCATTCATTTAACTAAGATAGCCACAAAGGCTTCCTTATAACAGAGATCA
* ** * * ** * * * * *
69600503 CCAGAAAATCATTCATTTAATTTAGATAATCACAAAGGCATACATT-CAATAGAGATCG
1 CCACAAAGGCATTCATTTAACTAAGATAGCCACAAAGGC-TTCCTTATAACAGAGATCA
* * *
69600561 CTAAAAAGGCATTCATATAACTAAGATAGCCACAAAGGCTTCCTTATAACAGAGATCA
1 CCACAAAGGCATTCATTTAACTAAGATAGCCACAAAGGCTTCCTTATAACAGAGATCA
** * * *
69600619 CCACAAAGGCATTCATTTAACTAAGATTTCCATAAAGGCTTCGTTATAACTGAGATC
1 CCACAAAGGCATTCATTTAACTAAGATAGCCACAAAGGCTTCCTTATAACAGAGATC
69600676 GCTATATATG
Statistics
Matches: 182, Mismatches: 43, Indels: 11
0.77 0.18 0.05
Matches are distributed among these distances:
57 9 0.05
58 170 0.93
59 3 0.02
ACGTcount: A:0.41, C:0.21, G:0.13, T:0.25
Consensus pattern (58 bp):
CCACAAAGGCATTCATTTAACTAAGATAGCCACAAAGGCTTCCTTATAACAGAGATCA
Found at i:69600717 original size:29 final size:29
Alignment explanation
Indices: 69600565--69600717 Score: 100
Period size: 29 Copynumber: 5.3 Consensus size: 29
69600555 AGATCGCTAA
* *
69600565 AAAGGCATTCATATAACTA-AGATAGCCAC
1 AAAGGCTTTCTTATAAC-AGAGATAGCCAC
*
69600594 AAAGGCTTCCTTATAACAGAGATCA-CCAC
1 AAAGGCTTTCTTATAACAGAGAT-AGCCAC
* ** *
69600623 AAAGGCATTCATT-TAACTA-AGATTTCCAT
1 AAAGGCTTTC-TTATAAC-AGAGATAGCCAC
* * * *
69600652 AAAGGC-TTCGTTATAACTGAGATCGCTAT
1 AAAGGCTTTC-TTATAACAGAGATAGCCAC
* * *
69600681 ATATGCTTTCTTATAACAGAGATAGCGAC
1 AAAGGCTTTCTTATAACAGAGATAGCCAC
69600710 AAAGGCTT
1 AAAGGCTT
69600718 ACATATGCAA
Statistics
Matches: 96, Mismatches: 20, Indels: 16
0.73 0.15 0.12
Matches are distributed among these distances:
28 6 0.06
29 83 0.86
30 7 0.07
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (29 bp):
AAAGGCTTTCTTATAACAGAGATAGCCAC
Found at i:69604628 original size:37 final size:37
Alignment explanation
Indices: 69604569--69604677 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
69604559 AGCTCAGACG
* * *
69604569 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
69604606 AAATCTCCACACGTAGTCATCGGGTCTTACCCAGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
69604643 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
69604678 ATATATTTCC
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:69606254 original size:40 final size:40
Alignment explanation
Indices: 69606198--69606352 Score: 208
Period size: 40 Copynumber: 3.9 Consensus size: 40
69606188 ACATAGCCCG
*
69606198 GTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTA
1 GTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTA
* *
69606238 GTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGGAATTA
1 GTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTA
* *
69606277 GTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATA
1 GTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATTTA
* *
69606317 GTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 GTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
69606353 CATCATTCGA
Statistics
Matches: 101, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.33
40 55 0.54
41 11 0.11
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
GTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTA
Found at i:69606298 original size:79 final size:80
Alignment explanation
Indices: 69606198--69606352 Score: 217
Period size: 79 Copynumber: 1.9 Consensus size: 80
69606188 ACATAGCCCG
* * *
69606198 GTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCACCAATGCCTTCGG
1 GTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGATATAGTAACTTAGCA-CAAAGCCTTCGG
69606261 G-CTTAGCCCGGAATTA
64 GACTTAGCCCGGAATTA
** *
69606277 GTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGA
1 GTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGA
69606342 CTTAGCCCGGA
66 CTTAGCCCGGA
69606353 CATCATTCGA
Statistics
Matches: 67, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
78 3 0.04
79 49 0.73
80 15 0.22
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
GTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGA
CTTAGCCCGGAATTA
Found at i:69608179 original size:48 final size:48
Alignment explanation
Indices: 69608055--69608239 Score: 309
Period size: 48 Copynumber: 3.8 Consensus size: 48
69608045 ACACATCGCC
*
69608055 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
69608103 TATATATATTGCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATAT-TT-CACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
69608153 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
69608201 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
69608240 TGCATGTTCA
Statistics
Matches: 128, Mismatches: 5, Indels: 8
0.91 0.04 0.06
Matches are distributed among these distances:
48 81 0.63
49 6 0.05
50 41 0.32
ACGTcount: A:0.31, C:0.26, G:0.08, T:0.35
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:69608201 original size:98 final size:96
Alignment explanation
Indices: 69608055--69608238 Score: 316
Period size: 98 Copynumber: 1.9 Consensus size: 96
69608045 ACACATCGCC
*
69608055 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTGCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT-TT-CACATT
69608120 -GACCATTCGGCTTTACCACATATGCATATCTCA
64 AG-CCATTCGGCTTTACCACATATGCATATCTCA
*
69608153 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
69608218 CCATTCGGCTTTACCACATAT
66 CCATTCGGCTTTACCACATAT
69608239 ATGCATGTTC
Statistics
Matches: 83, Mismatches: 2, Indels: 4
0.93 0.02 0.04
Matches are distributed among these distances:
96 27 0.33
97 3 0.04
98 53 0.64
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.35
Consensus pattern (96 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
CCATTCGGCTTTACCACATATGCATATCTCA
Found at i:69608288 original size:47 final size:47
Alignment explanation
Indices: 69608209--69608496 Score: 459
Period size: 47 Copynumber: 6.1 Consensus size: 47
69608199 CATACATATT
* * * *
69608209 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
69608256 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
69608303 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
69608350 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
69608397 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
69608444 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
69608491 TCACAT
1 TCACAT
69608497 AAAATCCTAA
Statistics
Matches: 223, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 223 1.00
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:69608382 original size:141 final size:141
Alignment explanation
Indices: 69608114--69608496 Score: 461
Period size: 141 Copynumber: 2.7 Consensus size: 141
69608104 ATATATATTG
* * * * *
69608114 CACATTGACCATTCGGCTTTA-C-CACATATGCATATCTCATACATAT-TTCACATTAGCCATTC
1 CACATTGGCCATTCGGCCTTATCACACATATGCAT-GCTC--ACAT-TCATCACATTGGCCATTC
* * * * * * *
69608176 GGCTTTACCACATATACATATCTCATACATATT--TCACATTAGCCATTCGGCTTTACCACATAT
62 GGCCTTATCACATAT--ATA-CACATTCACATTCATCACATTAGCCATTCGGCCTTACCACACAT
* *
69608239 ATGCATGTTCATATTCAC
124 ATGCATGCTCACATTCAC
69608257 CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCC
1 CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCC
* ** * *
69608322 TTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATG
66 TTATCACATATATACACATTCACATTCATCACATTAGCCATTCGGCCTTACCACACATATGCATG
*
69608387 CTCACATTCAT
131 CTCACATTCAC
* *
69608398 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCC
1 CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCC
*
69608463 TTATCTCATATATACACATTCACATTCATCACAT
66 TTATCACATATATACACATTCACATTCATCACAT
69608497 AAAATCCTAA
Statistics
Matches: 209, Mismatches: 26, Indels: 12
0.85 0.11 0.05
Matches are distributed among these distances:
139 7 0.03
140 2 0.01
141 135 0.65
142 31 0.15
143 19 0.09
144 4 0.02
145 11 0.05
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.33
Consensus pattern (141 bp):
CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCC
TTATCACATATATACACATTCACATTCATCACATTAGCCATTCGGCCTTACCACACATATGCATG
CTCACATTCAC
Found at i:69611872 original size:25 final size:25
Alignment explanation
Indices: 69611834--69611900 Score: 91
Period size: 25 Copynumber: 2.7 Consensus size: 25
69611824 TCCTGTACAT
*
69611834 GTATGCTCATATGAGCTATGAATTG
1 GTATGCTCATATGAGCTATGAATCG
*
69611859 GTATGCTC-TCATGAGCTGTGAATCG
1 GTATGCTCAT-ATGAGCTATGAATCG
*
69611884 GTAAGCTCATATGAGCT
1 GTATGCTCATATGAGCT
69611901 GTGGTGTGTC
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
24 1 0.03
25 35 0.95
26 1 0.03
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.33
Consensus pattern (25 bp):
GTATGCTCATATGAGCTATGAATCG
Found at i:69616151 original size:39 final size:40
Alignment explanation
Indices: 69616056--69616279 Score: 275
Period size: 40 Copynumber: 5.7 Consensus size: 40
69616046 TTGAATTCTG
*
69616056 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAA-A
* *
69616095 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
*
69616135 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACCAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* *
69616174 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
*
69616214 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTA-AA
69616255 T-CGGGCTAAGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
69616280 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
39 53 0.32
40 98 0.59
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:69616297 original size:80 final size:80
Alignment explanation
Indices: 69616056--69616312 Score: 230
Period size: 79 Copynumber: 3.2 Consensus size: 80
69616046 TTGAATTCTG
* * *
69616056 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGA-CAATATCCGGACTAAGAT-CCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACCAA-ATCCGGGCTAAG-TCCCGAAGGC
** *
69616116 ATTTGTGCGAGAT-ACTAAT
62 ATTTGAACGAG-TGACTAAA
* *
69616135 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACCAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACCAAATCCGGGCTAAGTCCCGAAGGCATTT
** *
69616199 GTGCGAGTTACTAAA
66 GAACGAGTGACTAAA
*
69616214 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACTATAAT-CGGGCTAAGTCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACCA-AATCCGGGCTAAGTCCCGAAGGCAT
*
69616277 TTGAACGAG-GAGCTATA
64 TTGAACGAGTGA-CTAAA
* *
69616294 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
69616313 TACGTGATTT
Statistics
Matches: 155, Mismatches: 13, Indels: 20
0.82 0.07 0.11
Matches are distributed among these distances:
78 11 0.07
79 72 0.46
80 68 0.44
81 4 0.03
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACCAAATCCGGGCTAAGTCCCGAAGGCATTT
GAACGAGTGACTAAA
Found at i:69624219 original size:40 final size:40
Alignment explanation
Indices: 69624130--69624353 Score: 275
Period size: 40 Copynumber: 5.7 Consensus size: 40
69624120 TTGAATTCTG
*
69624130 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAA-A
* *
69624169 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
*
69624209 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACCAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* *
69624248 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
*
69624288 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTA-AA
69624329 -CCGGGCTAAGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
69624354 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
39 53 0.32
40 99 0.60
41 12 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:69624341 original size:80 final size:80
Alignment explanation
Indices: 69624130--69624353 Score: 280
Period size: 79 Copynumber: 2.8 Consensus size: 80
69624120 TTGAATTCTG
* * * *
69624130 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAA-TTACAATAACCGGGCTAAG-TCCCGAAGGCAT
*
69624192 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
* *
69624209 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-TACCAA-ATCCGGGTTAAGTCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA-ATTA-CAATAACCGGGCTAAGTCCCGAAGGCAT
*
69624271 TTGTGCGAGTTACTAAA
64 TTGTGCGAGATACTAAA
* *
69624288 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACAATAACCGGGCTAAGTCCCGAAGGCATTT
69624353 G
66 G
69624354 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 10, Indels: 15
0.84 0.07 0.10
Matches are distributed among these distances:
78 10 0.08
79 60 0.47
80 56 0.44
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACAATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:69628135 original size:30 final size:31
Alignment explanation
Indices: 69628101--69628158 Score: 100
Period size: 30 Copynumber: 1.9 Consensus size: 31
69628091 TATATTATAA
69628101 TAATAGTTATATA-TGTATTAATATTTTTAG
1 TAATAGTTATATATTGTATTAATATTTTTAG
*
69628131 TAATAGTTATATATTGTATTATTATTTT
1 TAATAGTTATATATTGTATTAATATTTT
69628159 ATGTATTAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
30 13 0.50
31 13 0.50
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.57
Consensus pattern (31 bp):
TAATAGTTATATATTGTATTAATATTTTTAG
Found at i:69628174 original size:31 final size:32
Alignment explanation
Indices: 69628098--69628174 Score: 77
Period size: 31 Copynumber: 2.4 Consensus size: 32
69628088 ATCTATATTA
*
69628098 TAATAATAGTTATATATGTATTAATATTTTTAG
1 TAATAATA-ATATATATGTATTAATATTTTTAG
* * *
69628131 TAATAGTTATATAT-TGTATTATTA-TTTTATG
1 TAATAATAATATATATGTATTAATATTTTTA-G
*
69628162 TATTAATAATATA
1 TAATAATAATATA
69628175 CTAATTTAGT
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
30 5 0.14
31 20 0.56
32 5 0.14
33 6 0.17
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (32 bp):
TAATAATAATATATATGTATTAATATTTTTAG
Found at i:69630421 original size:50 final size:49
Alignment explanation
Indices: 69630361--69630461 Score: 157
Period size: 50 Copynumber: 2.0 Consensus size: 49
69630351 TAAATGCCGA
69630361 AATTATTTAAGCAACTAAAGAAAATTCAAAACAACTTAAATAATTAAACT
1 AATTATTTAAGCAACTAAAGAAAATT-AAAACAACTTAAATAATTAAACT
* * * *
69630411 AATTATTTAAGCAACTAAAGACAATTATAACAACTTAATTAGTTAAACT
1 AATTATTTAAGCAACTAAAGAAAATTAAAACAACTTAAATAATTAAACT
69630460 AA
1 AA
69630462 AATAACCGAA
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
49 22 0.47
50 25 0.53
ACGTcount: A:0.53, C:0.12, G:0.05, T:0.30
Consensus pattern (49 bp):
AATTATTTAAGCAACTAAAGAAAATTAAAACAACTTAAATAATTAAACT
Found at i:69651004 original size:39 final size:40
Alignment explanation
Indices: 69650919--69651004 Score: 122
Period size: 40 Copynumber: 2.2 Consensus size: 40
69650909 CGACTAAGAT
* * *
69650919 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGAATTTGTGCGAGTGACTATATCCGGGCTAAATC
69650959 CCGAAGGAATTTGTGCGAGTTG-CTATATCC-GGCTAAATC
1 CCGAAGGAATTTGTGCGAG-TGACTATATCCGGGCTAAATC
69650998 CCGAAGG
1 CCGAAGG
69651005 TACTTGGGTT
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
39 15 0.36
40 25 0.60
41 2 0.05
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGAATTTGTGCGAGTGACTATATCCGGGCTAAATC
Found at i:69653031 original size:26 final size:27
Alignment explanation
Indices: 69652991--69653070 Score: 67
Period size: 25 Copynumber: 2.9 Consensus size: 27
69652981 TCTATTGCCT
*
69652991 TATTCAAAAAGAATTATTTTATTAAAAA
1 TATT-AAAAACAATTATTTTATTAAAAA
* **
69653019 TA-TAAAAATAATT-TACTATT-AAAA
1 TATTAAAAACAATTATTTTATTAAAAA
69653043 TATTAAAAACAACTTTTATTTTATTAAA
1 TATTAAAAACAA---TTATTTTATTAAA
69653071 TGAAACAATA
Statistics
Matches: 40, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
24 6 0.15
25 13 0.32
26 9 0.22
27 1 0.03
28 4 0.10
29 5 0.12
30 2 0.05
ACGTcount: A:0.53, C:0.05, G:0.01, T:0.41
Consensus pattern (27 bp):
TATTAAAAACAATTATTTTATTAAAAA
Found at i:69655021 original size:19 final size:18
Alignment explanation
Indices: 69654978--69655034 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
69654968 TTATGAATAC
69654978 AAATAAATATGATTTAAA
1 AAATAAATATGATTTAAA
69654996 AAATAAATGA-GATTTAAGA
1 AAATAAAT-ATGATTTAA-A
*
69655015 GAATAAA-AT-A-TTAAA
1 AAATAAATATGATTTAAA
69655030 AAATA
1 AAATA
69655035 TATAGTTTTC
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
15 5 0.15
16 4 0.12
17 2 0.06
18 15 0.44
19 8 0.24
ACGTcount: A:0.63, C:0.00, G:0.09, T:0.28
Consensus pattern (18 bp):
AAATAAATATGATTTAAA
Found at i:69658030 original size:21 final size:20
Alignment explanation
Indices: 69658001--69658040 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
69657991 TATGAGATTT
69658001 AATGATTGATGATAGATTATG
1 AATGATTGATGATAG-TTATG
*
69658022 AATGTTTGATGATAGTTAT
1 AATGATTGATGATAGTTAT
69658041 ACAAGTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.35, C:0.00, G:0.23, T:0.42
Consensus pattern (20 bp):
AATGATTGATGATAGTTATG
Found at i:69658048 original size:20 final size:21
Alignment explanation
Indices: 69658006--69658048 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
69657996 GATTTAATGA
*
69658006 TTGATGATAGATTATGAATGT
1 TTGATGATAGATTATGAAAGT
69658027 TTGATGATAG-TTAT-ACAAGT
1 TTGATGATAGATTATGA-AAGT
69658047 TT
1 TT
69658049 TGTTAAGTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 1 0.05
20 9 0.45
21 10 0.50
ACGTcount: A:0.33, C:0.02, G:0.21, T:0.44
Consensus pattern (21 bp):
TTGATGATAGATTATGAAAGT
Found at i:69660467 original size:20 final size:21
Alignment explanation
Indices: 69660442--69660495 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 21
69660432 TAGAATTTGT
69660442 TTTTGAAATTTTTATAAA-TA
1 TTTTGAAATTTTTATAAATTA
* *
69660462 TTTTGAAAATTTGA-AAATTA
1 TTTTGAAATTTTTATAAATTA
*
69660482 TTTTG-TATTTTTAT
1 TTTTGAAATTTTTAT
69660496 TGAAAGAGAC
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
19 8 0.30
20 19 0.70
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.57
Consensus pattern (21 bp):
TTTTGAAATTTTTATAAATTA
Found at i:69661508 original size:27 final size:26
Alignment explanation
Indices: 69661453--69661513 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 26
69661443 ATTTTTCTTG
*
69661453 AAATTTTATTAGGGGTAAAATTGTAA
1 AAATTTTATTAGGGGTAAAATCGTAA
*
69661479 AAATTTTATT-GGGTAGTAAAATCGTCA
1 AAATTTTATTAGGG--GTAAAATCGTAA
69661506 AAATTTTA
1 AAATTTTA
69661514 CGAGAGTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
25 3 0.10
26 10 0.32
27 18 0.58
ACGTcount: A:0.41, C:0.03, G:0.16, T:0.39
Consensus pattern (26 bp):
AAATTTTATTAGGGGTAAAATCGTAA
Found at i:69664567 original size:19 final size:19
Alignment explanation
Indices: 69664543--69664580 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
69664533 TTTCATTGCC
69664543 TTAGTTCAGGGGTGCGATT
1 TTAGTTCAGGGGTGCGATT
69664562 TTAGTTCAGGGGTGCGATT
1 TTAGTTCAGGGGTGCGATT
69664581 GTTCTACCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.16, C:0.11, G:0.37, T:0.37
Consensus pattern (19 bp):
TTAGTTCAGGGGTGCGATT
Found at i:69676572 original size:55 final size:55
Alignment explanation
Indices: 69676464--69676573 Score: 136
Period size: 55 Copynumber: 2.0 Consensus size: 55
69676454 GTCGAGCCTA
*
69676464 CCAAAACAACACGGGCATGTGACACGCCCGTGTGGAAGAACCATGGGCGAACCTG
1 CCAAAACAACACGGGCATGTGACACGCCCGTGTGGAAGAACCATGGGCAAACCTG
* * *
69676519 CCAAAACAATACGGGCGT-TCGACACGCCCGTGT-G-AGACACCTATGGTCAAACCTG
1 CCAAAACAACACGGGCATGT-GACACGCCCGTGTGGAAGA-ACC-ATGGGCAAACCTG
69676574 TTAAAATTAA
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
53 3 0.06
54 5 0.10
55 40 0.83
ACGTcount: A:0.30, C:0.30, G:0.26, T:0.14
Consensus pattern (55 bp):
CCAAAACAACACGGGCATGTGACACGCCCGTGTGGAAGAACCATGGGCAAACCTG
Found at i:69692011 original size:13 final size:13
Alignment explanation
Indices: 69691993--69692017 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
69691983 GAATCAGGAT
69691993 GTGTGAAAATTTC
1 GTGTGAAAATTTC
69692006 GTGTGAAAATTT
1 GTGTGAAAATTT
69692018 AATCGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:69693208 original size:42 final size:44
Alignment explanation
Indices: 69693140--69693261 Score: 162
Period size: 43 Copynumber: 2.8 Consensus size: 44
69693130 CAAAAACTTA
*
69693140 TGATTTACGTGTAAGACCAC-GTCTGGGACATTGGCATCG-TATT
1 TGATTTACATGTAAGACC-CTGTCTGGGACATTGGCATCGATATT
*
69693183 TGATTT-CATGTAAGACCCTGTCTGGGACAGTGGCATCGATATT
1 TGATTTACATGTAAGACCCTGTCTGGGACATTGGCATCGATATT
* * *
69693226 TG-TTTACATGTAAGACCATGTCTAGGACGTTGGCAT
1 TGATTTACATGTAAGACCCTGTCTGGGACATTGGCAT
69693262 TGTACGAGCT
Statistics
Matches: 70, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
41 1 0.01
42 31 0.44
43 38 0.54
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (44 bp):
TGATTTACATGTAAGACCCTGTCTGGGACATTGGCATCGATATT
Found at i:69697713 original size:25 final size:25
Alignment explanation
Indices: 69697697--69697791 Score: 172
Period size: 25 Copynumber: 3.8 Consensus size: 25
69697687 CTCTTTTAAT
69697697 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
69697722 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
69697747 AACTGGGGCAAAGCCCTTTTCTGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
69697772 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
69697792 AGCACTTCCT
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 68 1.00
ACGTcount: A:0.23, C:0.24, G:0.26, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:69698663 original size:27 final size:27
Alignment explanation
Indices: 69698602--69698678 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 27
69698592 GGCATATTCA
69698602 TCATTTTACCATACAGGGGTATTACGG
1 TCATTTTACCATACAGGGGTATTACGG
* *
69698629 TCACTTTACCCTACAGGGGCT-TTACGG
1 TCATTTTACCATACAGGGG-TATTACGG
* *
69698656 TCTTTTTACC-TATTAGGGGTATT
1 TCATTTTACCATA-CAGGGGTATT
69698679 TTAGTAATTT
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
26 3 0.07
27 38 0.90
28 1 0.02
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (27 bp):
TCATTTTACCATACAGGGGTATTACGG
Found at i:69698749 original size:27 final size:27
Alignment explanation
Indices: 69698719--69698770 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
69698709 GTAAATCTAC
69698719 AAACCAAGGGTATTTC-AGTAATTTTGT
1 AAACCAAGGGTATTTCTA-TAATTTTGT
*
69698746 AAACCAATGGTATTTCTATAATTTT
1 AAACCAAGGGTATTTCTATAATTTT
69698771 TAGAAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.35, C:0.12, G:0.13, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCTATAATTTTGT
Found at i:69698831 original size:26 final size:27
Alignment explanation
Indices: 69698782--69698900 Score: 102
Period size: 27 Copynumber: 4.4 Consensus size: 27
69698772 AGAAAGTCAA
* * *
69698782 GGGTATTTTTGTAATTGTGT-AAATTAG
1 GGGTATTTTGGTAATT-TCTCAAACTAG
*
69698809 GGGTATTTTGGTAATTT-TCAAA-TTG
1 GGGTATTTTGGTAATTTCTCAAACTAG
* * *
69698834 AGGGTATTTCGGTAATTTCACAAACCAG
1 -GGGTATTTTGGTAATTTCTCAAACTAG
* *
69698862 TGGTATTTTGATAATTT-TACAAACTAG
1 GGGTATTTTGGTAATTTCT-CAAACTAG
69698889 GGGTATTTTGGT
1 GGGTATTTTGGT
69698901 GATTCTACCC
Statistics
Matches: 74, Mismatches: 13, Indels: 10
0.76 0.13 0.10
Matches are distributed among these distances:
25 3 0.04
26 20 0.27
27 50 0.68
28 1 0.01
ACGTcount: A:0.27, C:0.07, G:0.24, T:0.43
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTCTCAAACTAG
Found at i:69699038 original size:27 final size:27
Alignment explanation
Indices: 69698936--69699027 Score: 123
Period size: 27 Copynumber: 3.4 Consensus size: 27
69698926 GTAATTTCAC
* * *
69698936 AATCGAGGGTAAAA-CGATAATTTTGTA
1 AATCGAGGGTAAAATAG-TAATTCTATA
69698963 AATCGAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAATAGTAATTCTATA
* *
69698990 AATCAAGTGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAATAGTAATTCTATA
69699017 AATCGAGGGTA
1 AATCGAGGGTA
69699028 CTTTGGTAAT
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
27 56 0.98
28 1 0.02
ACGTcount: A:0.43, C:0.08, G:0.20, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATAGTAATTCTATA
Found at i:69704919 original size:43 final size:44
Alignment explanation
Indices: 69704797--69704954 Score: 180
Period size: 43 Copynumber: 3.7 Consensus size: 44
69704787 ATGTGTTTTT
* * * * *
69704797 GTGTAAGACCACGTCTAGGATGTTGGCATCGACATATGATTTAC
1 GTGTAAGACCATGTCTGGGACGTTGGCATCGATATTTGATTTAC
*
69704841 GTGTAACACCATGTCTGGGACGTTGGCATCG-TATTTGATTT-C
1 GTGTAAGACCATGTCTGGGACGTTGGCATCGATATTTGATTTAC
* *
69704883 GTGTAAGACCCTGTTTGGGACAG-TGGCATCGATATTTG-TTTAC
1 GTGTAAGACCATGTCTGGGAC-GTTGGCATCGATATTTGATTTAC
* * *
69704926 ATGTAAGATCATGTCTAGGACGTTGGCAT
1 GTGTAAGACCATGTCTGGGACGTTGGCAT
69704955 TGTACGAGCT
Statistics
Matches: 96, Mismatches: 14, Indels: 9
0.81 0.12 0.08
Matches are distributed among these distances:
42 31 0.32
43 38 0.40
44 27 0.28
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.33
Consensus pattern (44 bp):
GTGTAAGACCATGTCTGGGACGTTGGCATCGATATTTGATTTAC
Found at i:69707333 original size:87 final size:87
Alignment explanation
Indices: 69707187--69707360 Score: 330
Period size: 87 Copynumber: 2.0 Consensus size: 87
69707177 TCGAAGTTTC
* *
69707187 CATTGAGTTAGTATCAGGAACATCACTGATATCGATAGCACTGTAAAGAATTGCTCCCATAGAGT
1 CATTGAGTTAGTATCAGGAACATCACTGATATCGATAGCACCGTAAAGAATGGCTCCCATAGAGT
69707252 TGAAAGAGTTGAAAGCAAAGTT
66 TGAAAGAGTTGAAAGCAAAGTT
69707274 CATTGAGTTAGTATCAGGAACATCACTGATATCGATAGCACCGTAAAGAATGGCTCCCATAGAGT
1 CATTGAGTTAGTATCAGGAACATCACTGATATCGATAGCACCGTAAAGAATGGCTCCCATAGAGT
69707339 TGAAAGAGTTGAAAGCAAAGTT
66 TGAAAGAGTTGAAAGCAAAGTT
69707361 GCAAGAGTTG
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
87 85 1.00
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (87 bp):
CATTGAGTTAGTATCAGGAACATCACTGATATCGATAGCACCGTAAAGAATGGCTCCCATAGAGT
TGAAAGAGTTGAAAGCAAAGTT
Found at i:69709505 original size:40 final size:40
Alignment explanation
Indices: 69709437--69709695 Score: 409
Period size: 40 Copynumber: 6.5 Consensus size: 40
69709427 AACCCAAGTA
* *
69709437 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
69709476 CCTTCGGGACTTAGCCCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
69709516 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
69709556 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
69709596 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAACTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
69709636 CCTTCGGGACTTAGCTCGGATATAGTCACTAGCAC-CATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
69709675 CCTTCGGGACTTAGCCCGGAT
1 CCTTCGGGACTTAGCCCGGAT
69709696 GTCATCCGAA
Statistics
Matches: 209, Mismatches: 9, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
39 35 0.17
40 173 0.83
41 1 0.00
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:69715466 original size:42 final size:41
Alignment explanation
Indices: 69715408--69715571 Score: 184
Period size: 42 Copynumber: 3.9 Consensus size: 41
69715398 TTAGGGTTAT
* *
69715408 TGAGATTACATGTAAGACCATATTTGGGATATGGCATCGATA
1 TGAGATT-CATGTAAGACCATATCTAGGATATGGCATCGATA
* * *
69715450 TGAGACTTCATATAAGACCATATCTAGGATATAGCATCGATG
1 TGAGA-TTCATGTAAGACCATATCTAGGATATGGCATCGATA
* * * *
69715492 TGAGATTTCGTGTAAGACCATAGCTAGGCTATTGACATCGATA
1 TGAGA-TTCATGTAAGACCATATCTAGGATA-TGGCATCGATA
* *
69715535 TGAGATCCCATGTAAGACCATATCTTGGATATGGCAT
1 TGAGAT-TCATGTAAGACCATATCTAGGATATGGCAT
69715572 TGGTATATTA
Statistics
Matches: 100, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
42 66 0.66
43 34 0.34
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (41 bp):
TGAGATTCATGTAAGACCATATCTAGGATATGGCATCGATA
Found at i:69717871 original size:20 final size:21
Alignment explanation
Indices: 69717846--69717885 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
69717836 TCTTAGAAAC
*
69717846 AGGGC-ACGCGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
69717866 AGGGCAACACGCCCGTGTGG
1 AGGGCAACACGCCCGTGTGG
69717886 CCATTAGGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.17, C:0.30, G:0.42, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:69721606 original size:20 final size:21
Alignment explanation
Indices: 69721581--69721647 Score: 104
Period size: 20 Copynumber: 3.3 Consensus size: 21
69721571 ATTTTGATAT
69721581 ACATGAT-TGATATGATATGC
1 ACATGATATGATATGATATGC
69721601 ACATGATATG-TATGATATGC
1 ACATGATATGATATGATATGC
*
69721621 ACATGATCT-ATATGATATGC
1 ACATGATATGATATGATATGC
69721641 ACATGAT
1 ACATGAT
69721648 GTATTCATAA
Statistics
Matches: 44, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
20 42 0.95
21 2 0.05
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.34
Consensus pattern (21 bp):
ACATGATATGATATGATATGC
Found at i:69721608 original size:11 final size:11
Alignment explanation
Indices: 69721592--69721647 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
69721582 CATGATTGAT
69721592 ATGATATGCAC
1 ATGATATGCAC
*
69721603 ATGATATG--T
1 ATGATATGCAC
69721612 ATGATATGCAC
1 ATGATATGCAC
* *
69721623 ATGATCT--AT
1 ATGATATGCAC
69721632 ATGATATGCAC
1 ATGATATGCAC
69721643 ATGAT
1 ATGAT
69721648 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.34
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:69721769 original size:23 final size:24
Alignment explanation
Indices: 69721697--69721775 Score: 128
Period size: 23 Copynumber: 3.4 Consensus size: 24
69721687 GAGGAAGTAC
69721697 AAAAGGGCTTATG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
69721720 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
69721743 AAAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
69721766 AAAAGAGGCT
1 AAAAG-GGCT
69721776 AGGCCTCTAG
Statistics
Matches: 53, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
22 12 0.23
23 28 0.53
24 13 0.25
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:69735718 original size:16 final size:16
Alignment explanation
Indices: 69735693--69735724 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
69735683 AAAACTTTAT
*
69735693 AAAATTTTTGTTTTTG
1 AAAATCTTTGTTTTTG
69735709 AAAATCTTTGTTTTTG
1 AAAATCTTTGTTTTTG
69735725 TACACCCATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.03, G:0.12, T:0.59
Consensus pattern (16 bp):
AAAATCTTTGTTTTTG
Found at i:69736753 original size:27 final size:26
Alignment explanation
Indices: 69736693--69736802 Score: 141
Period size: 27 Copynumber: 4.1 Consensus size: 26
69736683 CATGGCTGCT
* *
69736693 AGAACAGATAATGTGACAGAGTCACC
1 AGAACAGATAATGTGGCAGAGCCACC
69736719 AGATACAGATAATCGTGGCAGAGCCACC
1 AGA-ACAGATAAT-GTGGCAGAGCCACC
69736747 AGAACAGATATATGTGGCAGAGCCACC
1 AGAACAGATA-ATGTGGCAGAGCCACC
*
69736774 AGATCAGATAATTGTGGC-GTAGCCACC
1 AGAACAGATAA-TGTGGCAG-AGCCACC
69736801 AG
1 AG
69736803 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 3, Indels: 9
0.86 0.03 0.10
Matches are distributed among these distances:
26 5 0.07
27 54 0.71
28 17 0.22
ACGTcount: A:0.36, C:0.22, G:0.25, T:0.16
Consensus pattern (26 bp):
AGAACAGATAATGTGGCAGAGCCACC
Found at i:69736783 original size:54 final size:54
Alignment explanation
Indices: 69736693--69736802 Score: 161
Period size: 54 Copynumber: 2.0 Consensus size: 54
69736683 CATGGCTGCT
*
69736693 AGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAG-AGCCACC
1 AGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGC-GTAGCCACC
* *
69736747 AGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCGTAGCCACC
1 AGAACAGATA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCGTAGCCACC
69736801 AG
1 AG
69736803 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
53 1 0.02
54 32 0.63
55 18 0.35
ACGTcount: A:0.36, C:0.22, G:0.25, T:0.16
Consensus pattern (54 bp):
AGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCGTAGCCACC
Found at i:69739626 original size:46 final size:46
Alignment explanation
Indices: 69739576--69739747 Score: 217
Period size: 46 Copynumber: 3.7 Consensus size: 46
69739566 TGAGCATCCA
69739576 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* * *
69739622 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCCG
*
69739669 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* *
69739715 AGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69739748 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 59 0.55
47 29 0.27
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
Found at i:69739728 original size:93 final size:93
Alignment explanation
Indices: 69739569--69739740 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
69739559 GGATGGTTGA
*
69739569 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
69739634 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
69739662 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
69739727 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
69739741 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:69748088 original size:15 final size:15
Alignment explanation
Indices: 69748068--69748098 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
69748058 CCAACCTTCA
69748068 AATTTTACCTCAATT
1 AATTTTACCTCAATT
69748083 AATTTTACCTCAATT
1 AATTTTACCTCAATT
69748098 A
1 A
69748099 TACATAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.35, C:0.19, G:0.00, T:0.45
Consensus pattern (15 bp):
AATTTTACCTCAATT
Found at i:69750297 original size:11 final size:11
Alignment explanation
Indices: 69750281--69750307 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
69750271 TAGAAATTAG
69750281 TTTGTGAAACT
1 TTTGTGAAACT
69750292 TTTGTGAAACT
1 TTTGTGAAACT
69750303 TTTGT
1 TTTGT
69750308 ATTGATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.22, C:0.07, G:0.19, T:0.52
Consensus pattern (11 bp):
TTTGTGAAACT
Found at i:69751911 original size:48 final size:52
Alignment explanation
Indices: 69751841--69751939 Score: 118
Period size: 52 Copynumber: 2.0 Consensus size: 52
69751831 AATAATTATT
69751841 ATTTTAAATTATACAAATTCATA-AACT-A-T-AATCATATTAGTTATAATA
1 ATTTTAAATTATACAAATTCATATAACTAATTAAATCATATTAGTTATAATA
* * **
69751889 ATTTTAAATTTTATTAAA-TCATATATTTAATTAAATCATATTAGTTATAAT
1 ATTTTAAATTATA-CAAATTCATATAACTAATTAAATCATATTAGTTATAAT
69751940 CATATATTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
48 17 0.40
49 5 0.12
50 1 0.02
51 1 0.02
52 18 0.43
ACGTcount: A:0.45, C:0.06, G:0.02, T:0.46
Consensus pattern (52 bp):
ATTTTAAATTATACAAATTCATATAACTAATTAAATCATATTAGTTATAATA
Found at i:69751921 original size:17 final size:17
Alignment explanation
Indices: 69751896--69751929 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
69751886 ATAATTTTAA
*
69751896 ATTTTATTAAATCATAT
1 ATTTAATTAAATCATAT
69751913 ATTTAATTAAATCATAT
1 ATTTAATTAAATCATAT
69751930 TAGTTATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTTAATTAAATCATAT
Found at i:69751946 original size:17 final size:16
Alignment explanation
Indices: 69751901--69751948 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
69751891 TTTAAATTTT
69751901 ATTAAATCATATATTTA
1 ATTAAATCATATA-TTA
69751918 ATTAAATC--ATATTA
1 ATTAAATCATATATTA
*
69751932 GTTATAATCATATATTA
1 ATTA-AATCATATATTA
69751949 TGATTTGAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 6 0.22
15 7 0.26
17 14 0.52
ACGTcount: A:0.46, C:0.06, G:0.02, T:0.46
Consensus pattern (16 bp):
ATTAAATCATATATTA
Found at i:69752020 original size:18 final size:17
Alignment explanation
Indices: 69751989--69752023 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
69751979 ATTATTAAGA
69751989 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
69752006 ATTTTAATTATATTATAT
1 ATTTT-ATTAAATTATAT
69752024 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:69752089 original size:129 final size:130
Alignment explanation
Indices: 69751936--69752169 Score: 425
Period size: 129 Copynumber: 1.8 Consensus size: 130
69751926 ATATTAGTTA
*
69751936 TAATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
1 TAATAATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
* *
69752001 TATATATTTTAATTATATTATATTTAATAATAATTATGTTATTTTATATTTTACAGTATCATATT
66 TATATATTTTAATTAAAATATATTTAATAATAATTATGTTATTTTATATTTTACAGTATCATATT
*
69752066 TAATAATA-ATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
1 TAATAATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
69752130 TATATATTTTAATTAAAATATATTTAATAATAATTATGTT
66 TATATATTTTAATTAAAATATATTTAATAATAATTATGTT
69752170 TAATTATGAT
Statistics
Matches: 100, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
129 93 0.93
130 7 0.07
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (130 bp):
TAATAATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
TATATATTTTAATTAAAATATATTTAATAATAATTATGTTATTTTATATTTTACAGTATCATATT
Found at i:69752146 original size:18 final size:17
Alignment explanation
Indices: 69752118--69752152 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
69752108 ATTATTAAGA
*
69752118 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
69752135 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
69752153 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:69752152 original size:16 final size:16
Alignment explanation
Indices: 69752118--69752175 Score: 52
Period size: 16 Copynumber: 3.6 Consensus size: 16
69752108 ATTATTAAGA
69752118 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
69752135 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
69752151 A-TTTAA-TAATAAT-T
1 ATTTTAATTAA-AATAT
69752165 ATGTTTAATTA
1 AT-TTTAATTA
69752176 TGATTAAATT
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
14 5 0.14
15 8 0.22
16 10 0.28
17 7 0.19
18 6 0.17
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:69752264 original size:144 final size:147
Alignment explanation
Indices: 69752106--69752377 Score: 478
Period size: 144 Copynumber: 1.9 Consensus size: 147
69752096 ATAAGAATAT
*
69752106 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
69752171 AATTATGATTAAATTATTTATTATTGAT-AT-TAATCTTATTAAAATTTAAATAA-AATAATTTA
66 AAATATGATTAAATTATTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAATTTA
69752233 CCAAAACAAATTTCTGC
131 CCAAAACAAATTTCTGC
69752250 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
69752315 AAATATGATTAAATTATTTATTTTTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
66 AAATATGATTAAATTATTTATTATTGATAAT--ATAATCTTATTAAAATTTAAATAACAATAA
69752378 CAATAATCAT
Statistics
Matches: 120, Mismatches: 3, Indels: 5
0.94 0.02 0.04
Matches are distributed among these distances:
144 90 0.75
145 2 0.02
148 23 0.19
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (147 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
AAATATGATTAAATTATTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAATTTA
CCAAAACAAATTTCTGC
Found at i:69752290 original size:18 final size:17
Alignment explanation
Indices: 69752262--69752296 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
69752252 ATTATTAAGA
*
69752262 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
69752279 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
69752297 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:69752507 original size:44 final size:45
Alignment explanation
Indices: 69752458--69752552 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
69752448 TTACACCTCT
* *
69752458 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
** *
69752502 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
69752547 ATTACA
1 ATTACA
69752553 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:69752552 original size:16 final size:16
Alignment explanation
Indices: 69752531--69752563 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
69752521 TTGATTTGCT
*
69752531 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
69752547 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
69752563 A
1 A
69752564 ATCCAATACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.30, C:0.36, G:0.00, T:0.33
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:69752573 original size:21 final size:21
Alignment explanation
Indices: 69752544--69752586 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
69752534 ACACCTCTAT
*
69752544 TCCATTACACCTCTAATCCAA
1 TCCAATACACCTCTAATCCAA
69752565 TCCAATACACCTCTAATCCAA
1 TCCAATACACCTCTAATCCAA
69752586 T
1 T
69752587 ACAGTGAACC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.28
Consensus pattern (21 bp):
TCCAATACACCTCTAATCCAA
Found at i:69755090 original size:46 final size:46
Alignment explanation
Indices: 69755040--69755215 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
69755030 TGGTTGAGCA
69755040 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
69755086 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
69755131 CATCCGAAGTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
69755179 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69755216 GCGGGTTGCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.57
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:69755196 original size:93 final size:93
Alignment explanation
Indices: 69755037--69755208 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
69755027 GGATGGTTGA
* *
69755037 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
69755102 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
69755130 GCATCCGAAGTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
69755195 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
69755209 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:69756579 original size:27 final size:27
Alignment explanation
Indices: 69756549--69756834 Score: 367
Period size: 27 Copynumber: 10.6 Consensus size: 27
69756539 TTAGTTTACC
69756549 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* ** *
69756576 AAATTACTAAAATACCATTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
69756603 AAATCACCAAAATA-CCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** **
69756629 AAATTACCAAAATACCATTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
69756656 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
69756683 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
69756710 AGATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
69756737 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
69756764 AAATTATCAAAATACCCTTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
69756791 AAATTACCAAAATACCCTTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
*
69756818 AAATTACTAAAATACCC
1 AAATTACCAAAATACCC
69756835 TCGACCTGTA
Statistics
Matches: 221, Mismatches: 37, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
26 22 0.10
27 199 0.90
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:69756835 original size:27 final size:27
Alignment explanation
Indices: 69756549--69756945 Score: 361
Period size: 27 Copynumber: 14.7 Consensus size: 27
69756539 TTAGTTTACC
* *
69756549 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
* * * *
69756576 AAATTACTAAAATACCATTGGTTTATA
1 AAATTACCAAAATACCCTTGATTTGTA
* *
69756603 AAATCACCAAAATACCC-TGGTTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
* * **
69756629 AAATTACCAAAATACCATTGGTTTACA
1 AAATTACCAAAATACCCTTGATTTGTA
* *
69756656 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
* *
69756683 AAATTACTAAAATACCCTTTG-TTTATA
1 AAATTACCAAAATACCC-TTGATTTGTA
* *
69756710 AGATTACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCTTGA-TTTGTA
* *
69756737 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
*
69756764 AAATTATCAAAATACCCTT-AGTTTGTA
1 AAATTACCAAAATACCCTTGA-TTTGTA
*
69756791 AAATTACCAAAATACCCTTGATTTGTG
1 AAATTACCAAAATACCCTTGATTTGTA
* * **
69756818 AAATTACTAAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
*** * *
69756845 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
* *
69756872 AAATTACCAAAGTACCCTTGATTTATA
1 AAATTACCAAAATACCCTTGATTTGTA
* **** * *
69756899 GAATTACCGTTTTACCCTCGATTTATA
1 AAATTACCAAAATACCCTTGATTTGTA
**
69756926 AAATTACTGAAATACCCTTG
1 AAATTACCAAAATACCCTTG
69756946 TAGGGTAGAA
Statistics
Matches: 306, Mismatches: 57, Indels: 14
0.81 0.15 0.04
Matches are distributed among these distances:
26 24 0.08
27 279 0.91
28 3 0.01
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGATTTGTA
Found at i:69756964 original size:27 final size:27
Alignment explanation
Indices: 69756934--69757226 Score: 399
Period size: 27 Copynumber: 10.9 Consensus size: 27
69756924 TAAAATTACT
*
69756934 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAAATACC
* * *
69756961 GAAATACCCTTGTAGGGTAGAAGTACT
1 GAAATACCCCTGTAGGGTAGAAATACC
69756988 GAAATACCCCTGTAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAAATACC
69757015 GAAATACCCCTGTAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAAATACC
* * *
69757042 GAAATACCCTTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAAATACC
* * *
69757069 AAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAAATACC
* * * *
69757096 AAAATACCCCTATAAGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAAATACC
*
69757123 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAAATACC
* *
69757150 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAAATACC
*
69757177 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAAATACC
* *
69757204 GAGATACCCTTGTAGGGTA-AAAT
1 GAAATACCCCTGTAGGGTAGAAAT
69757227 TACCATTTTA
Statistics
Matches: 241, Mismatches: 25, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
26 3 0.01
27 238 0.99
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.24
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAAATACC
Found at i:69757241 original size:81 final size:80
Alignment explanation
Indices: 69756927--69757231 Score: 441
Period size: 81 Copynumber: 3.8 Consensus size: 80
69756917 CGATTTATAA
* * * *
69756927 AATTACTGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTAGAAGTACTGAAA
1 AATTACTGAAATACCCCTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTAAAATTAC-CAAA
69756992 TACCCCTGTAGGGTAG
65 TACCCCTGTAGGGTAG
* * * *
69757008 AAATACCGAAATACCCCTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTAGAATTACTAAAA
1 AATTACTGAAATACCCCTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTAAAATTAC-CAAA
69757073 TACCCCTGTAGGGTAG
65 TACCCCTGTAGGGTAG
* * * *
69757089 AATTACTAAAATACCCCTATAAGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAA-TACCGAA
1 AATTACTGAAATACCCCTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTA-AAATTACC-AA
69757153 ATACCCCTGTAGGGTAG
64 ATACCCCTGTAGGGTAG
* *
69757170 AATTACTGAAATACCCCTGTAGGGTAGAATTACCGAGATACCCTTGTAGGGTAAAATTACCA
1 AATTACTGAAATACCCCTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTAAAATTACCA
69757232 TTTTACCCCT
Statistics
Matches: 204, Mismatches: 17, Indels: 7
0.89 0.07 0.03
Matches are distributed among these distances:
80 4 0.02
81 198 0.97
82 2 0.01
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (80 bp):
AATTACTGAAATACCCCTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTAAAATTACCAAAT
ACCCCTGTAGGGTAG
Found at i:69757574 original size:67 final size:67
Alignment explanation
Indices: 69757456--69757611 Score: 240
Period size: 67 Copynumber: 2.3 Consensus size: 67
69757446 GAGGAAGCGT
* * * *
69757456 TCTGGCAGACTCGCTGCAATCTGGTGGCCTCGCCACATATACCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATTTAGTGGCCTCGCCACATATACCTGTCCTGGTGACTTCGTCACAA
69757521 TA
66 TA
* *
69757523 TCTGGCAGCCTCGCTGCAATTTAGTGGCTTCGCCACATATATCTGTCCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATTTAGTGGCCTCGCCACATATACCTGTCCTGGTGACTTCGTCACAA
69757588 TA
66 TA
* *
69757590 TCTAGCAGCGTCGCTGCAATTT
1 TCTGGCAGCCTCGCTGCAATTT
69757612 CTGTGGTGTG
Statistics
Matches: 81, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
67 81 1.00
ACGTcount: A:0.19, C:0.29, G:0.22, T:0.30
Consensus pattern (67 bp):
TCTGGCAGCCTCGCTGCAATTTAGTGGCCTCGCCACATATACCTGTCCTGGTGACTTCGTCACAA
TA
Found at i:69757750 original size:6 final size:6
Alignment explanation
Indices: 69757735--69757806 Score: 60
Period size: 6 Copynumber: 11.8 Consensus size: 6
69757725 ATTCTGTTAC
* *
69757735 CTGATA CTGATT CTGATT TTGATT CTG-TT ACCTGATAT -TGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGAT-T CTGATT CTGATT
*
69757784 CTGATT TTGATT CT-AGTT CTGAT
1 CTGATT CTGATT CTGA-TT CTGAT
69757807 AATGTTTCTT
Statistics
Matches: 54, Mismatches: 5, Indels: 14
0.74 0.07 0.19
Matches are distributed among these distances:
5 4 0.07
6 44 0.81
7 4 0.07
8 1 0.02
9 1 0.02
ACGTcount: A:0.19, C:0.14, G:0.17, T:0.50
Consensus pattern (6 bp):
CTGATT
Found at i:69757763 original size:31 final size:31
Alignment explanation
Indices: 69757712--69757789 Score: 120
Period size: 31 Copynumber: 2.5 Consensus size: 31
69757702 TTGCATTCAC
*
69757712 ATTCTGATTTTTTATTCTGTTACCTGATACTG
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
*
69757744 ATTCTGATTTTGATTCTGTTACCTGATATTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
*
69757775 ATTCTGATTCTGATT
1 ATTCTGATTTTGATT
69757790 TTGATTCTAG
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
31 36 0.84
32 7 0.16
ACGTcount: A:0.19, C:0.14, G:0.14, T:0.53
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:69762883 original size:40 final size:40
Alignment explanation
Indices: 69762812--69762921 Score: 136
Period size: 40 Copynumber: 2.8 Consensus size: 40
69762802 TACCAGCTCG
* * * * *
69762812 TAGCCTACGGGTCTCT-AGCCCAGATAGCATTCTAGCACGA
1 TAGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCA-GA
*
69762852 -AGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
1 TAGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCAGA
69762891 TAGCCTGCGGGTCTTTAAGCCCGGAT-ACATT
1 TAGCCTGCGGGTCTTTAAGCCCGGATAACATT
69762922 TCCTCAAGTC
Statistics
Matches: 62, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
39 19 0.31
40 43 0.69
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
TAGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCAGA
Found at i:69770422 original size:40 final size:41
Alignment explanation
Indices: 69770338--69770447 Score: 138
Period size: 40 Copynumber: 2.8 Consensus size: 41
69770328 TACCATCTCG
* * *
69770338 TAGCCTGCGGGTCTCT-AGCCCGGATAGCATTCTAGCACGA
1 TAGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCACGA
* *
69770378 -AGCCTGCGGGTCTTTAAGCCTGGATAACATTCCAGCA-TA
1 TAGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCACGA
*
69770417 TAGCCTGCGGGTCTTTAAGCCCAGAT-ACATT
1 TAGCCTGCGGGTCTTTAAGCCCGGATAACATT
69770448 TCCTCAAGTA
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
39 20 0.33
40 41 0.67
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (41 bp):
TAGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCACGA
Found at i:69773752 original size:13 final size:13
Alignment explanation
Indices: 69773731--69773761 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
69773721 AACATTTCAC
69773731 ACATAATATATAT
1 ACATAATATATAT
*
69773744 ACATTATATATAT
1 ACATAATATATAT
69773757 ACATA
1 ACATA
69773762 CATGCAAGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.39
Consensus pattern (13 bp):
ACATAATATATAT
Found at i:69774783 original size:38 final size:40
Alignment explanation
Indices: 69774713--69774790 Score: 115
Period size: 38 Copynumber: 2.0 Consensus size: 40
69774703 AAGCCTAGTA
*
69774713 TAATACACCGGCACAGAGCCTGCTAGGTAATAAACCTGATT
1 TAATACACCGG-ACAGAGCCTGCTAGGCAATAAACCTGATT
*
69774754 TAATACACCGG-CA-AGCCTGCTAGGCAATAAGCCTGAT
1 TAATACACCGGACAGAGCCTGCTAGGCAATAAACCTGAT
69774791 AACATACACT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
38 22 0.63
39 2 0.06
41 11 0.31
ACGTcount: A:0.33, C:0.26, G:0.21, T:0.21
Consensus pattern (40 bp):
TAATACACCGGACAGAGCCTGCTAGGCAATAAACCTGATT
Found at i:69774798 original size:38 final size:39
Alignment explanation
Indices: 69774714--69774804 Score: 105
Period size: 38 Copynumber: 2.3 Consensus size: 39
69774704 AGCCTAGTAT
* *
69774714 AATACACCGGCACAGAGCCTGCTAGGTAATAAACCTGATTT
1 AATACACCGG--CAGAGCCTGCTAGGCAATAAACCTGATTA
*
69774755 AATACACCGGCA-AGCCTGCTAGGCAATAAGCCTGA-TA
1 AATACACCGGCAGAGCCTGCTAGGCAATAAACCTGATTA
*
69774792 ACATACACTGGCA
1 A-ATACACCGGCA
69774805 TCAAGGCCTA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
37 2 0.04
38 31 0.69
39 2 0.04
41 10 0.22
ACGTcount: A:0.35, C:0.26, G:0.20, T:0.19
Consensus pattern (39 bp):
AATACACCGGCAGAGCCTGCTAGGCAATAAACCTGATTA
Found at i:69776773 original size:42 final size:42
Alignment explanation
Indices: 69776690--69776835 Score: 131
Period size: 42 Copynumber: 3.4 Consensus size: 42
69776680 TCCTAGACGT
* * *
69776690 GGTCTTACATGTAATCAAATATCAATGCCACTATCCCAGACAG
1 GGTCTTACACGAAATCAAATA-CGATGCCACTATCCCAGACAG
* *
69776733 GGTCTTACACGAAATCAAATACGATGCCGA-TGTCCCAGACAT
1 GGTCTTACACGAAATCAAATACGATGCC-ACTATCCCAGACAG
69776775 GGTCTTACACGTAAATCTCAAAT-CGATGCCAAC-ATCCCA-A-ATG
1 GGTCTTACACG-AAA--TCAAATACGATGCC-ACTATCCCAGACA-G
*
69776818 TGGTCTTACACAAAATCA
1 -GGTCTTACACGAAATCA
69776836 CATATCGGAA
Statistics
Matches: 87, Mismatches: 9, Indels: 16
0.78 0.08 0.14
Matches are distributed among these distances:
41 3 0.03
42 28 0.32
43 27 0.31
44 23 0.26
45 6 0.07
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.24
Consensus pattern (42 bp):
GGTCTTACACGAAATCAAATACGATGCCACTATCCCAGACAG
Found at i:69776791 original size:43 final size:43
Alignment explanation
Indices: 69776666--69776805 Score: 137
Period size: 43 Copynumber: 3.3 Consensus size: 43
69776656 CAAAAAGCTT
* * * *
69776666 ATACAATGCCAAC-GTCCTAGACGTGGTCTTACATGT-AATCAA
1 ATACGATGCC-ACTGTCCCAGACATGGTCTTACACGTAAATCAA
* * *
69776708 ATATCAATGCCACTATCCCAGACAGGGTCTTACACG-AAATCAA
1 ATA-CGATGCCACTGTCCCAGACATGGTCTTACACGTAAATCAA
69776751 ATACGATGCCGA-TGTCCCAGACATGGTCTTACACGTAAATCTCAA
1 ATACGATGCC-ACTGTCCCAGACATGGTCTTACACGTAAA--TCAA
69776796 AT-CGATGCCA
1 ATACGATGCCA
69776806 ACATCCCAAA
Statistics
Matches: 83, Mismatches: 8, Indels: 13
0.80 0.08 0.12
Matches are distributed among these distances:
42 32 0.39
43 38 0.46
44 7 0.08
45 6 0.07
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (43 bp):
ATACGATGCCACTGTCCCAGACATGGTCTTACACGTAAATCAA
Found at i:69783463 original size:15 final size:15
Alignment explanation
Indices: 69783443--69783472 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
69783433 GACTGAAAAG
69783443 AATATTGAATCCGTA
1 AATATTGAATCCGTA
69783458 AATATTGAATCCGTA
1 AATATTGAATCCGTA
69783473 CCAGTTCTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.33
Consensus pattern (15 bp):
AATATTGAATCCGTA
Found at i:69785497 original size:46 final size:47
Alignment explanation
Indices: 69785445--69785536 Score: 150
Period size: 47 Copynumber: 2.0 Consensus size: 47
69785435 TTGAATTTAA
* *
69785445 AGCTTGTTAAA-TTGCTCTTAATATTTCCGGATAAGTTACTTAGTTC
1 AGCTTGTTAAATTTGCCCTTAATATTTCCAGATAAGTTACTTAGTTC
*
69785491 AGCTTGTTAAATTTGCCCTTATTATTTCCAGATAAGTTACTTAGTT
1 AGCTTGTTAAATTTGCCCTTAATATTTCCAGATAAGTTACTTAGTT
69785537 AAAGAAAATT
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
46 11 0.26
47 31 0.74
ACGTcount: A:0.26, C:0.15, G:0.14, T:0.45
Consensus pattern (47 bp):
AGCTTGTTAAATTTGCCCTTAATATTTCCAGATAAGTTACTTAGTTC
Done.