Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 214 of 356
Found at i:69787401 original size:39 final size:40
Alignment explanation
Indices: 69787356--69787443 Score: 97
Period size: 40 Copynumber: 2.2 Consensus size: 40
69787346 CGGGGTTTAG
* * *
69787356 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
69787395 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
69787435 CCGGATATA
1 CCGGATATA
69787444 GTCGCTAGCA
Statistics
Matches: 39, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
39 15 0.38
40 24 0.62
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:69787426 original size:40 final size:40
Alignment explanation
Indices: 69787379--69787523 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
69787369 CTCGCACAAG
* * * * *
69787379 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
*
69787419 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAACT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
69787459 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
*
69787500 GCCTTTGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
69787524 CATTCGAGTA
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
39 3 0.03
40 58 0.65
41 25 0.28
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:69787922 original size:45 final size:38
Alignment explanation
Indices: 69787876--69787951 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
69787866 CAAGAACTCC
*
69787876 TTCCTCCCTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
69787914 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
69787952 AAAGGATGAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.30
Consensus pattern (38 bp):
TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
Found at i:69794015 original size:28 final size:28
Alignment explanation
Indices: 69793933--69794110 Score: 234
Period size: 28 Copynumber: 6.4 Consensus size: 28
69793923 GAGATTGGCG
* * * *
69793933 CTAAGTGTGCGGGTTTAAATTGTGCAGCA
1 CTAAGTGTGCGAGTTT-GATTATGTAGCA
* *
69793962 CTAAGTGTGCGA-ATTGACTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
69793989 CTAAGTGTGCGAGTTTGACTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
69794017 CTAAGTGTGCGAGCTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
69794045 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
69794073 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
69794100 CTGAGTGTGCG
1 CTAAGTGTGCG
69794111 GACTTATTAT
Statistics
Matches: 136, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
27 44 0.32
28 81 0.60
29 11 0.08
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATGTAGCA
Found at i:69801455 original size:28 final size:28
Alignment explanation
Indices: 69801373--69801550 Score: 234
Period size: 28 Copynumber: 6.4 Consensus size: 28
69801363 GAGATTGGCG
* * * *
69801373 CTAAGTGTGCGGGTTTAAATTGTGCAGCA
1 CTAAGTGTGCGAGTTT-GATTATGTAGCA
* *
69801402 CTAAGTGTGCGA-ATTGACTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
69801429 CTAAGTGTGCGAGTTTGACTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
69801457 CTAAGTGTGCGAGCTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
69801485 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
69801513 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
69801540 CTGAGTGTGCG
1 CTAAGTGTGCG
69801551 GACTTATTAT
Statistics
Matches: 136, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
27 44 0.32
28 81 0.60
29 11 0.08
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATGTAGCA
Found at i:69805710 original size:40 final size:40
Alignment explanation
Indices: 69805651--69805795 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
69805641 CTCGTACAAG
* * * * * *
69805651 GCCTTCAGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
69805691 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* ** *
69805731 GCCTTC-GGATCTTAGTCCGGATGCAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
69805772 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
69805796 CATTCGAGTA
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
39 3 0.03
40 57 0.64
41 26 0.29
42 3 0.03
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:69806193 original size:45 final size:38
Alignment explanation
Indices: 69806148--69806223 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
69806138 CAAGAACTCC
*
69806148 TTCCTCCCTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
69806186 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
69806224 AAAGGATGAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.30
Consensus pattern (38 bp):
TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
Found at i:69807111 original size:45 final size:45
Alignment explanation
Indices: 69807038--69807299 Score: 370
Period size: 45 Copynumber: 5.9 Consensus size: 45
69807028 CGCACAGTAT
*
69807038 TATTCGGGCCTTTGAGCCTAGCAGGCTGTAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
** * *
69807083 TATTTAGGCCTTTGAGCCTAGCAAGCTGTAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
* * *
69807128 TATTCGGGTCTTTGGGCCTAGCAGGCTATAATGCCGGTGAGAAAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
*
69807173 TATTCGGGCCTTTGAGCCTAGTAGGCTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
* *
69807218 TATTCGGGCTTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGA-
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGAT-AC
* *
69807263 TA-TCGGG-CTTCGAGCCTAGCAGGCGA-AATGCCGGTGA
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
69807300 ATGAATTTAG
Statistics
Matches: 196, Mismatches: 20, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
42 11 0.06
43 16 0.08
44 5 0.03
45 163 0.83
46 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.27
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
Found at i:69812740 original size:34 final size:34
Alignment explanation
Indices: 69812697--69812775 Score: 122
Period size: 34 Copynumber: 2.3 Consensus size: 34
69812687 AGGACCTCGT
69812697 TACTGATACTGTGATGGGCTAAGGCCCTAATGCA
1 TACTGATACTGTGATGGGCTAAGGCCCTAATGCA
* *
69812731 TACTGATACTGTGATGGGCTAAGGCCTTACTGCA
1 TACTGATACTGTGATGGGCTAAGGCCCTAATGCA
*
69812765 TATTTGATACT
1 TA-CTGATACT
69812776 ATACTGAGGT
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
34 34 0.83
35 7 0.17
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (34 bp):
TACTGATACTGTGATGGGCTAAGGCCCTAATGCA
Found at i:69816132 original size:40 final size:40
Alignment explanation
Indices: 69816076--69816241 Score: 223
Period size: 40 Copynumber: 4.2 Consensus size: 40
69816066 ATTGATACCA
* * *
69816076 GGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACTA-AATTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAA-CC
69816116 GGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCT-AGTTACTATAACC
*
69816156 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAACC
* *
69816196 GGGCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTTA-CTATAACC
69816236 -GGCTAA
1 GGGCTAA
69816242 ACTCCGAAGG
Statistics
Matches: 115, Mismatches: 7, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
39 9 0.08
40 104 0.90
41 2 0.02
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAACC
Found at i:69817550 original size:6 final size:7
Alignment explanation
Indices: 69817533--69817562 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
69817523 ATGGACTGTA
69817533 AAAAAAT
1 AAAAAAT
69817540 AAAAAAT
1 AAAAAAT
69817547 AAAAAAT
1 AAAAAAT
69817554 AAAAAAT
1 AAAAAAT
69817561 AA
1 AA
69817563 GGGAATTAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (7 bp):
AAAAAAT
Found at i:69824966 original size:50 final size:50
Alignment explanation
Indices: 69824831--69825046 Score: 222
Period size: 50 Copynumber: 4.3 Consensus size: 50
69824821 GCTAAATGAC
* * * * * *
69824831 CTTGTATATTCGGCCACATAGGTATGTACATATGTGATGTTGTATTGGAT
1 CTTGTATATTCGGCCATATAAGTAAGTACATATGTGATATTATATTTGAT
* * * * * *
69824881 TTTGAATATTCGG-C-TATGAAGGTATGGAAAAATGTGATATTATATTTGAAT
1 CTTGTATATTCGGCCATAT-AA-GTAAGTACATATGTGATATTATATTTG-AT
* *
69824932 -TTGTATATTCGGCCATATAAGTAAGTACATATGTGATGTTAAATTTGAT
1 CTTGTATATTCGGCCATATAAGTAAGTACATATGTGATATTATATTTGAT
* * *
69824981 CTTGCATATTCGACCATATAGGTAAGTACATATGTGATATTATATTTGAT
1 CTTGTATATTCGGCCATATAAGTAAGTACATATGTGATATTATATTTGAT
*
69825031 CTTGTATATTTGGCCA
1 CTTGTATATTCGGCCA
69825047 AATGAGTTGT
Statistics
Matches: 135, Mismatches: 25, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
48 2 0.01
49 4 0.03
50 121 0.90
51 5 0.04
52 3 0.02
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (50 bp):
CTTGTATATTCGGCCATATAAGTAAGTACATATGTGATATTATATTTGAT
Found at i:69824969 original size:100 final size:100
Alignment explanation
Indices: 69824831--69825046 Score: 265
Period size: 100 Copynumber: 2.2 Consensus size: 100
69824821 GCTAAATGAC
* * ** * * *
69824831 CTTGTATATTCGGCCACATAGGTATGTACATATGTGATGTTGTATTGGATTTTGAATATTCGGCT
1 CTTGTATATTCGGCCACATAAGTAAGTACATATGTGATGTTAAATTGGATCTTGAATATTCGACC
*
69824896 ATGA-AGGTATGGAAAAATGTGATATTATATTTGAAT
66 AT-ATAGGTAAGGAAAAATGTGATATTATATTTG-AT
* * *
69824932 -TTGTATATTCGGCCATATAAGTAAGTACATATGTGATGTTAAATTTGATCTTGCATATTCGACC
1 CTTGTATATTCGGCCACATAAGTAAGTACATATGTGATGTTAAATTGGATCTTGAATATTCGACC
* * *
69824996 ATATAGGTAAGTACATATGTGATATTATATTTGAT
66 ATATAGGTAAGGAAAAATGTGATATTATATTTGAT
*
69825031 CTTGTATATTTGGCCA
1 CTTGTATATTCGGCCA
69825047 AATGAGTTGT
Statistics
Matches: 98, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
99 3 0.03
100 95 0.97
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (100 bp):
CTTGTATATTCGGCCACATAAGTAAGTACATATGTGATGTTAAATTGGATCTTGAATATTCGACC
ATATAGGTAAGGAAAAATGTGATATTATATTTGAT
Found at i:69828187 original size:64 final size:63
Alignment explanation
Indices: 69828106--69828289 Score: 208
Period size: 67 Copynumber: 2.9 Consensus size: 63
69828096 AGACATTATG
* *
69828106 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATA
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
* * * * *
69828169 TATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 -ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
69828234 TA
62 TA
** * * *
69828236 AACTAGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
69828290 CGAACTATAT
Statistics
Matches: 99, Mismatches: 17, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 24 0.24
67 30 0.30
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (63 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
Found at i:69844416 original size:93 final size:93
Alignment explanation
Indices: 69844306--69844476 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
69844296 GCCCCTAAGT
* *
69844306 GAACTCGGACTCAACTCAACGAGCTCAGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGAACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAAATCGGACTCAACTCA
69844370 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
*
69844399 GAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAAATCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAAATCGGACTCAACTCAA
69844464 CGAGTTCGGATGC
66 CGAGTTCGGATGC
69844477 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAAATCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:69844473 original size:46 final size:46
Alignment explanation
Indices: 69844301--69844473 Score: 203
Period size: 46 Copynumber: 3.7 Consensus size: 46
69844291 AACCCGCCCC
*
69844301 TAAGTGAACTCGGACTCAACTCAACGAGCTCAGG-CATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCA
*
69844347 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* * *
69844395 TCA-CGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
69844440 TAAGTGAAATCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
69844474 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 10, Indels: 20
0.78 0.07 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 57 0.53
47 28 0.26
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:69844929 original size:30 final size:30
Alignment explanation
Indices: 69844895--69844954 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
69844885 CATTTAATAC
69844895 AAAC-TTTGAAAAAATTACACTTTTGCCCCT
1 AAACTTTTG-AAAAATTACACTTTTGCCCCT
* *
69844925 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTTGAAAAATTACACTTTTGCCCCT
69844955 TGGCTCGGGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 23 0.85
31 4 0.15
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.37
Consensus pattern (30 bp):
AAACTTTTGAAAAATTACACTTTTGCCCCT
Found at i:69858204 original size:50 final size:51
Alignment explanation
Indices: 69858057--69858272 Score: 185
Period size: 50 Copynumber: 4.3 Consensus size: 51
69858047 GCTAAATGAC
* * * * * *
69858057 CTTG-TATATTCGGCCACATAGGTATGTACATATGTGATGTTGTATTGGAT
1 CTTGATATATTCGGCCATATAAGTAAGTACATATGTGATATTATATTTGAT
* * * * * *
69858107 TTTGA-ATATTTGGCCATA-AAGGTATGGACAAACGTGATATTATATTTGAAT
1 CTTGATATATTCGGCCATATAA-GTAAGTACATATGTGATATTATATTTG-AT
* * *
69858158 -TT-ATATATTCGGCCATATAAGTAAGTACATATGTAATGTTAAATTTGAT
1 CTTGATATATTCGGCCATATAAGTAAGTACATATGTGATATTATATTTGAT
* * * *
69858207 CTTGCT-TAATCGGCCATATAGGTAAGCACATATGTGATATTATATTTGAT
1 CTTGATATATTCGGCCATATAAGTAAGTACATATGTGATATTATATTTGAT
*
69858257 CTTG-TATATTTGGCCA
1 CTTGATATATTCGGCCA
69858273 AATGAGTGAT
Statistics
Matches: 131, Mismatches: 27, Indels: 16
0.75 0.16 0.09
Matches are distributed among these distances:
49 5 0.04
50 121 0.92
51 5 0.04
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (51 bp):
CTTGATATATTCGGCCATATAAGTAAGTACATATGTGATATTATATTTGAT
Found at i:69858244 original size:100 final size:100
Alignment explanation
Indices: 69858061--69858272 Score: 237
Period size: 100 Copynumber: 2.1 Consensus size: 100
69858051 AATGACCTTG
* * * ** * * *
69858061 TATATTCGGCCACATAGGTATGTACATATGTGATGTTGTATTGGATTTTGAATATTTGGCCATAA
1 TATATTCGGCCACATAAGTAAGTACATATGTAATGTTAAATTGGATCTTGAATAATCGGCCATAA
* *
69858126 AGGTATGGACAAACGTGATATTATATTTGAAT-TTA
66 AGGTAAGCACAAACGTGATATTATATTTG-ATCTTA
* * ** *
69858161 TATATTCGGCCATATAAGTAAGTACATATGTAATGTTAAATTTGATCTTGCTTAATCGGCCATAT
1 TATATTCGGCCACATAAGTAAGTACATATGTAATGTTAAATTGGATCTTGAATAATCGGCCATAA
* * *
69858226 AGGTAAGCACATATGTGATATTATATTTGATCTTG
66 AGGTAAGCACAAACGTGATATTATATTTGATCTTA
*
69858261 TATATTTGGCCA
1 TATATTCGGCCA
69858273 AATGAGTGAT
Statistics
Matches: 92, Mismatches: 19, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
99 2 0.02
100 90 0.98
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (100 bp):
TATATTCGGCCACATAAGTAAGTACATATGTAATGTTAAATTGGATCTTGAATAATCGGCCATAA
AGGTAAGCACAAACGTGATATTATATTTGATCTTA
Found at i:69859291 original size:17 final size:17
Alignment explanation
Indices: 69859265--69859298 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
69859255 ATTGAATAGG
* *
69859265 TATTAGATATGTTTTGT
1 TATTAAATATGATTTGT
69859282 TATTAAATATGATTTGT
1 TATTAAATATGATTTGT
69859299 GCTATAAATG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.15, T:0.56
Consensus pattern (17 bp):
TATTAAATATGATTTGT
Found at i:69860218 original size:22 final size:22
Alignment explanation
Indices: 69860193--69860240 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
69860183 TTTTTTCAGG
69860193 ATTTATTTCCTCTTCTAAACAT
1 ATTTATTTCCTCTTCTAAACAT
69860215 ATTTATTTCCTCTTCTAAACAT
1 ATTTATTTCCTCTTCTAAACAT
69860237 ATTT
1 ATTT
69860241 CTAAATCTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.27, C:0.21, G:0.00, T:0.52
Consensus pattern (22 bp):
ATTTATTTCCTCTTCTAAACAT
Found at i:69862484 original size:41 final size:41
Alignment explanation
Indices: 69862439--69862521 Score: 148
Period size: 41 Copynumber: 2.0 Consensus size: 41
69862429 ATTCCATTTG
69862439 AGCATACATCCAATAGACCTAAACACCTTTCAAACACATAT
1 AGCATACATCCAATAGACCTAAACACCTTTCAAACACATAT
* *
69862480 AGCATACATTCAATAGACTTAAACACCTTTCAAACACATAT
1 AGCATACATCCAATAGACCTAAACACCTTTCAAACACATAT
69862521 A
1 A
69862522 AACATACCAA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.45, C:0.27, G:0.05, T:0.24
Consensus pattern (41 bp):
AGCATACATCCAATAGACCTAAACACCTTTCAAACACATAT
Found at i:69862524 original size:21 final size:21
Alignment explanation
Indices: 69862458--69862525 Score: 61
Period size: 21 Copynumber: 3.3 Consensus size: 21
69862448 CCAATAGACC
69862458 TAAACACCTTTCAAACACATA
1 TAAACACCTTTCAAACACATA
* * * *
69862479 T-AGCATACATTCAATAGAC-T-
1 TAAACA-CCTTTCAA-ACACATA
69862499 TAAACACCTTTCAAACACATA
1 TAAACACCTTTCAAACACATA
69862520 TAAACA
1 TAAACA
69862526 TACCAATTCA
Statistics
Matches: 34, Mismatches: 8, Indels: 10
0.65 0.15 0.19
Matches are distributed among these distances:
19 3 0.09
20 11 0.32
21 17 0.50
22 3 0.09
ACGTcount: A:0.47, C:0.25, G:0.03, T:0.25
Consensus pattern (21 bp):
TAAACACCTTTCAAACACATA
Found at i:69863825 original size:25 final size:24
Alignment explanation
Indices: 69863797--69863863 Score: 71
Period size: 25 Copynumber: 2.7 Consensus size: 24
69863787 TGTGAATCGG
69863797 GAAGAGCATACGAGCTGCAAATTAA
1 GAAG-GCATACGAGCTGCAAATTAA
* * * *
69863822 GAAGCTCATACGAGTTGTAAATTAG
1 GAAG-GCATACGAGCTGCAAATTAA
69863847 GAAGGTCATACGAGCTG
1 GAAGG-CATACGAGCTG
69863864 TGGTGTGTCT
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.37, C:0.15, G:0.27, T:0.21
Consensus pattern (24 bp):
GAAGGCATACGAGCTGCAAATTAA
Found at i:69871588 original size:28 final size:28
Alignment explanation
Indices: 69871495--69871599 Score: 110
Period size: 27 Copynumber: 3.9 Consensus size: 28
69871485 AGGAAGCGTC
* *
69871495 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACGATTATCTGTAT
* *
69871522 CTGGTGGCTCTACCA-GATATTTCTGT-T
1 CTGGTGGCTCTGCCACGAT-TATCTGTAT
69871549 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACGATTATCTGTAT
* * *
69871577 CTAGTGACTCTGTCAC-ATTATCT
1 CTGGTGGCTCTGCCACGATTATCT
69871600 ATCCTGGCAG
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
26 2 0.03
27 46 0.71
28 17 0.26
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.37
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACGATTATCTGTAT
Found at i:69891131 original size:13 final size:13
Alignment explanation
Indices: 69891113--69891141 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
69891103 TTTAGTTTAA
69891113 TTAGTTAATTAGT
1 TTAGTTAATTAGT
69891126 TTAGTTAATTAGT
1 TTAGTTAATTAGT
69891139 TTA
1 TTA
69891142 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:69901773 original size:42 final size:42
Alignment explanation
Indices: 69901710--69901800 Score: 105
Period size: 42 Copynumber: 2.2 Consensus size: 42
69901700 TCGTTTACTT
** * *
69901710 GATGCCATAGTCCAACTATGGTCTTATGCGAAGTCTCATATC
1 GATGCCATAGTCCAACTATGGTCTTACACGAAATCACATATC
*
69901752 GATGCCAT-GTCCCAGAC-ATGGTCTTACACGAAATCACATATT
1 GATGCCATAGT-CCA-ACTATGGTCTTACACGAAATCACATATC
69901794 GATGCCA
1 GATGCCA
69901801 ACGCTATATC
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
41 2 0.05
42 38 0.90
43 2 0.05
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (42 bp):
GATGCCATAGTCCAACTATGGTCTTACACGAAATCACATATC
Found at i:69901840 original size:48 final size:48
Alignment explanation
Indices: 69901753--69902125 Score: 548
Period size: 48 Copynumber: 7.6 Consensus size: 48
69901743 TCTCATATCG
* ** *
69901753 ATGCCATGTCCCAGACATGGTCTTACACGAAATCACATATTGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
* * * * *
69901801 ACGCTATATCCTAGATATGGTCTTACATGGGATCACATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
*
69901849 ATGCCATGTCCCGGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC---G---ATGCCA
69901903 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
* *
69901951 ATGCCATGACCCAGACATGGTCTTACATGGGATTACATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
* * *
69901999 ATTCCATGTCCCAGACATGATCTTACATGGGATCACATATCGATGCAA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
*
69902047 ATGCCATGTTCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
69902095 ATGCCATGTCCCAGACATGGTCTTACATGGG
1 ATGCCATGTCCCAGACATGGTCTTACATGGG
69902126 GTTACAATGC
Statistics
Matches: 291, Mismatches: 28, Indels: 12
0.88 0.08 0.04
Matches are distributed among these distances:
48 243 0.84
51 2 0.01
54 46 0.16
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
Found at i:69902024 original size:150 final size:144
Alignment explanation
Indices: 69901753--69902131 Score: 553
Period size: 150 Copynumber: 2.6 Consensus size: 144
69901743 TCTCATATCG
* ** * * * * *
69901753 ATGCCATGTCCCAGACATGGTCTTACACGAAATCACATATTGATGCCAACGCTAT-ATCCTAGAT
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGA-CCCAGAC
* * *
69901817 ATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCGGACATGGTCTTACATGGGAT
65 ATGGTCTTACATGGGATTACATATCGATGCCAATGCCATGTCCCAGACATGATCTTACATGGGAT
69901882 CACATATCGATGCCAATGCCA
130 CACATATCGATG-C-A----A
69901903 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGACCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGACCCAGACA
*
69901968 TGGTCTTACATGGGATTACATATCGATGCCAATTCCATGTCCCAGACATGATCTTACATGGGATC
66 TGGTCTTACATGGGATTACATATCGATGCCAATGCCATGTCCCAGACATGATCTTACATGGGATC
69902033 ACATATCGATGCAA
131 ACATATCGATGCAA
* *
69902047 ATGCCATGTTCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGACCCAGACA
*
69902112 TGGTCTTACATGGGGTTACA
66 TGGTCTTACATGGGATTACA
69902132 ATGCCATAGC
Statistics
Matches: 213, Mismatches: 15, Indels: 8
0.90 0.06 0.03
Matches are distributed among these distances:
144 83 0.39
148 1 0.00
149 1 0.00
150 127 0.60
151 1 0.00
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (144 bp):
ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGACCCAGACA
TGGTCTTACATGGGATTACATATCGATGCCAATGCCATGTCCCAGACATGATCTTACATGGGATC
ACATATCGATGCAA
Found at i:69906371 original size:33 final size:33
Alignment explanation
Indices: 69906325--69906419 Score: 109
Period size: 33 Copynumber: 2.9 Consensus size: 33
69906315 AGCATGCAGT
* * * * *
69906325 AACAGTCTCGGCCTAAGCCCTATCCAGTATCAT
1 AACAGTCTGGGCCTTAGCCCTATACAGTAACAG
* *
69906358 TACAGTCTGGGCCTTAGCCCTATAGAGTAACAG
1 AACAGTCTGGGCCTTAGCCCTATACAGTAACAG
* *
69906391 AACAGTCTGGGCTTTAGCCCTATATAGTA
1 AACAGTCTGGGCCTTAGCCCTATACAGTA
69906420 GCAGTGTGGG
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 52 1.00
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.26
Consensus pattern (33 bp):
AACAGTCTGGGCCTTAGCCCTATACAGTAACAG
Found at i:69906666 original size:27 final size:28
Alignment explanation
Indices: 69906608--69906688 Score: 89
Period size: 27 Copynumber: 3.0 Consensus size: 28
69906598 AGCTGCCAAA
*
69906608 AACAGTAAATT-TGGCA-AGCCACCAGC
1 AACAGTAAATTGTGGCATAGCCACCAGT
*
69906634 ATCAGT-AATTGTGGCATAGCCACCAGT
1 AACAGTAAATTGTGGCATAGCCACCAGT
* * *
69906661 AACAGTGAA-TGTGACATAGTCACCAGT
1 AACAGTAAATTGTGGCATAGCCACCAGT
69906688 A
1 A
69906689 CAATACTTCC
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
25 4 0.09
26 10 0.21
27 31 0.66
28 2 0.04
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.21
Consensus pattern (28 bp):
AACAGTAAATTGTGGCATAGCCACCAGT
Found at i:69906859 original size:27 final size:27
Alignment explanation
Indices: 69906829--69906945 Score: 137
Period size: 27 Copynumber: 4.3 Consensus size: 27
69906819 GGGCATAATC
* * *
69906829 GTCACTTTACCATACAGGGGTATTGCT-
1 GTCATTTTACCCTACAGGGGTATT-ATG
*
69906856 GTCATTTTACCCTACAGGGGAATTATG
1 GTCATTTTACCCTACAGGGGTATTATG
* *
69906883 GTCATTTTACCTTATAGGGGTATTATG
1 GTCATTTTACCCTACAGGGGTATTATG
* *
69906910 GTCATTTTACCCTATAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTATG
*
69906937 ATCATTTTA
1 GTCATTTTA
69906946 AAAATTAGGG
Statistics
Matches: 79, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
26 1 0.01
27 78 0.99
ACGTcount: A:0.24, C:0.17, G:0.21, T:0.38
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGTATTATG
Found at i:69906954 original size:27 final size:27
Alignment explanation
Indices: 69906924--69907064 Score: 106
Period size: 27 Copynumber: 5.3 Consensus size: 27
69906914 TTTTACCCTA
*
69906924 TAGGGGTATTACGATCATTTTAAAAAT
1 TAGGGGTATTACGATAATTTTAAAAAT
* *
69906951 TAGGGGTATTTCGATAATTTTACAAAT
1 TAGGGGTATTACGATAATTTTAAAAAT
* * ** * *
69906978 CAAGAATACTT-CGATAATTTCACAAAT
1 TAGGGGTA-TTACGATAATTTTAAAAAT
* * * * **
69907005 CAGGGGTATTTCGGTAATTTTACAACC
1 TAGGGGTATTACGATAATTTTAAAAAT
* *
69907032 TAGGGGTATTTCGATAATTTTACAAAT
1 TAGGGGTATTACGATAATTTTAAAAAT
69907059 T-GGGGT
1 TAGGGGT
69907065 CTTAACGACC
Statistics
Matches: 93, Mismatches: 19, Indels: 5
0.79 0.16 0.04
Matches are distributed among these distances:
26 7 0.08
27 84 0.90
28 2 0.02
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.36
Consensus pattern (27 bp):
TAGGGGTATTACGATAATTTTAAAAAT
Found at i:69906955 original size:54 final size:54
Alignment explanation
Indices: 69906856--69906960 Score: 131
Period size: 54 Copynumber: 1.9 Consensus size: 54
69906846 GGGTATTGCT
* * ***
69906856 GTCATTTTACCCTACAGGGGAATTATGGTCATTTTACCTTATAGGGGTATTATG
1 GTCATTTTACCCTACAGGGGAATTACGATCATTTTAAAATATAGGGGTATTATG
* *
69906910 GTCATTTTACCCTATAGGGGTATTACGATCATTTTAAAA-ATTAGGGGTATT
1 GTCATTTTACCCTACAGGGGAATTACGATCATTTTAAAATA-TAGGGGTATT
69906961 TCGATAATTT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
53 1 0.02
54 42 0.98
ACGTcount: A:0.27, C:0.13, G:0.21, T:0.39
Consensus pattern (54 bp):
GTCATTTTACCCTACAGGGGAATTACGATCATTTTAAAATATAGGGGTATTATG
Found at i:69907045 original size:54 final size:53
Alignment explanation
Indices: 69906923--69907058 Score: 155
Period size: 54 Copynumber: 2.5 Consensus size: 53
69906913 ATTTTACCCT
* * * *
69906923 ATAGGGGTATTACGATCATTTTAAAAATTAGGGGTATTTCGATAATTTTACAA
1 ATAGGGGTATTTCGATAATTTTACAAATCAGGGGTATTTCGATAATTTTACAA
* ** * * *
69906976 ATCAAGAATACTTCGATAATTTCACAAATCAGGGGTATTTCGGTAATTTTACAA
1 AT-AGGGGTATTTCGATAATTTTACAAATCAGGGGTATTTCGATAATTTTACAA
*
69907030 CCTAGGGGTATTTCGATAATTTTACAAAT
1 -ATAGGGGTATTTCGATAATTTTACAAAT
69907059 TGGGGTCTTA
Statistics
Matches: 65, Mismatches: 16, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
53 2 0.03
54 62 0.95
55 1 0.02
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.36
Consensus pattern (53 bp):
ATAGGGGTATTTCGATAATTTTACAAATCAGGGGTATTTCGATAATTTTACAA
Found at i:69907291 original size:17 final size:18
Alignment explanation
Indices: 69907269--69907304 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
69907259 ATTAAATGTG
*
69907269 TGGGCCCAC-GAGCCCAT
1 TGGGCCCACACAGCCCAT
69907286 TGGGCCCACACAGCCCAT
1 TGGGCCCACACAGCCCAT
69907304 T
1 T
69907305 TTAGACTATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.19, C:0.42, G:0.25, T:0.14
Consensus pattern (18 bp):
TGGGCCCACACAGCCCAT
Found at i:69910467 original size:43 final size:43
Alignment explanation
Indices: 69910406--69910491 Score: 120
Period size: 43 Copynumber: 2.0 Consensus size: 43
69910396 ATCATATGTA
* *
69910406 TCGCATCCATTATGAACTC-GAGCCACTCAACGAGCTCGGATGC
1 TCGCATCCATAATGAACTCGGA-CCACTCAACGAACTCGGATGC
* *
69910449 TCGCATCCATAATGAACTCGGACTACTCAACGAACTTGGATGC
1 TCGCATCCATAATGAACTCGGACCACTCAACGAACTCGGATGC
69910492 CACATATATC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
43 36 0.95
44 2 0.05
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (43 bp):
TCGCATCCATAATGAACTCGGACCACTCAACGAACTCGGATGC
Found at i:69928033 original size:27 final size:26
Alignment explanation
Indices: 69928002--69928096 Score: 93
Period size: 27 Copynumber: 3.5 Consensus size: 26
69927992 TTAGTTTACC
* *
69928002 AAATTACTGAAATACCTTCGACTTGTA
1 AAATTACTCAAATACC-TCGATTTGTA
*
69928029 AAATTAC-CAAAGTACCCTCGATTTATA
1 AAATTACTCAAA-TA-CCTCGATTTGTA
*
69928056 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACTCAAATA-CCTCGATTTGTA
* *
69928083 AAATCACTGAAATA
1 AAATTACTCAAATA
69928097 AGATAGAATT
Statistics
Matches: 57, Mismatches: 8, Indels: 6
0.80 0.11 0.08
Matches are distributed among these distances:
26 3 0.05
27 48 0.84
28 6 0.11
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (26 bp):
AAATTACTCAAATACCTCGATTTGTA
Found at i:69928425 original size:27 final size:27
Alignment explanation
Indices: 69928099--69928423 Score: 470
Period size: 27 Copynumber: 12.0 Consensus size: 27
69928089 CTGAAATAAG
69928099 ATAGAATTACCATTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTT
* * **
69928126 ACAGAATTATCGCTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTT
*
69928153 ATAGAATTACTATTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTT
* * *
69928180 ATAGAATTATCGTTTTACCCTCAATTT
1 ATAGAATTACCATTTTACCCTCGATTT
*
69928207 ATAGAATTACCATTTTAACCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTT
* **
69928234 ACAGAATTACTGTTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTT
*
69928261 ATAGAATTACCGTTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTT
*
69928288 ATAGAATTACTATTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTT
* *
69928315 ATAGAATTACCGTTTTACCCTCAATTT
1 ATAGAATTACCATTTTACCCTCGATTT
69928342 ATAGAATTACCATTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTT
69928369 ATAGAATTACCATTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTT
* ** *
69928396 ACAGAATTACTGTTTTATCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTT
69928423 A
1 A
69928424 CAAAATTATT
Statistics
Matches: 264, Mismatches: 34, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 264 1.00
ACGTcount: A:0.29, C:0.21, G:0.09, T:0.42
Consensus pattern (27 bp):
ATAGAATTACCATTTTACCCTCGATTT
Found at i:69928465 original size:27 final size:26
Alignment explanation
Indices: 69928420--69928628 Score: 161
Period size: 27 Copynumber: 7.8 Consensus size: 26
69928410 TTATCCTCGA
* * *
69928420 TTTACAAAATTATTGAAATACCCTTAG
1 TTTATAAAATTACTAAAATACCC-TAG
* * *
69928447 TTTACAAAATTACCAAAATACCCTCG
1 TTTATAAAATTACTAAAATACCCTAG
* * *
69928473 ATAAGTAAAATTACCAAAATACCCCTAG
1 TTTA-TAAAATTACTAAAATA-CCCTAG
* *
69928501 TTTGTAAAATTACTAAAATACCCTGG
1 TTTATAAAATTACTAAAATACCCTAG
* *
69928527 TTTGTAAAATTACTAAAATACCCTTGG
1 TTTATAAAATTACTAAAATACCC-TAG
*
69928554 TTTGTAAAATTACTAAAATACCCCT-G
1 TTTATAAAATTACTAAAATA-CCCTAG
* * *
69928580 ACTTGTAAAATTACTAAAATACCTCTAA
1 -TTTATAAAATTACTAAAATACC-CTAG
* *
69928608 TTTGTGAAATTA-TCAAAATAC
1 TTTATAAAATTACT-AAAATAC
69928629 TCTCGATTTG
Statistics
Matches: 157, Mismatches: 17, Indels: 16
0.83 0.09 0.08
Matches are distributed among these distances:
26 36 0.23
27 112 0.71
28 9 0.06
ACGTcount: A:0.42, C:0.18, G:0.08, T:0.33
Consensus pattern (26 bp):
TTTATAAAATTACTAAAATACCCTAG
Found at i:69928572 original size:107 final size:107
Alignment explanation
Indices: 69928425--69928628 Score: 261
Period size: 107 Copynumber: 1.9 Consensus size: 107
69928415 CTCGATTTAC
* *
69928425 AAAATTATTGAAATACCCTTAGTTTACAAAATTACCAAAATA-CCCTCGA-TAAGTAAAATTACC
1 AAAATTACTAAAATACCCTTAGTTTACAAAATTACCAAAATACCCCT-GACT-AGTAAAATTACC
*
69928488 AAAATACCCCTAGTTTGTAAAATTA-CTAAAATACCCTGGTTTGT
64 AAAATACCCCTAATTTGTAAAATTATC-AAAATACCCTGGTTTGT
* ** * * *
69928532 AAAATTACTAAAATACCCTTGGTTTGTAAAATTACTAAAATACCCCTGACTTGTAAAATTACTAA
1 AAAATTACTAAAATACCCTTAGTTTACAAAATTACCAAAATACCCCTGACTAGTAAAATTACCAA
* *
69928597 AATACCTCTAATTTGTGAAATTATCAAAATAC
66 AATACCCCTAATTTGTAAAATTATCAAAATAC
69928629 TCTCGATTTG
Statistics
Matches: 83, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
107 77 0.93
108 6 0.07
ACGTcount: A:0.43, C:0.18, G:0.08, T:0.32
Consensus pattern (107 bp):
AAAATTACTAAAATACCCTTAGTTTACAAAATTACCAAAATACCCCTGACTAGTAAAATTACCAA
AATACCCCTAATTTGTAAAATTATCAAAATACCCTGGTTTGT
Found at i:69928637 original size:27 final size:26
Alignment explanation
Indices: 69928452--69928640 Score: 175
Period size: 27 Copynumber: 7.0 Consensus size: 26
69928442 CTTAGTTTAC
* **
69928452 AAAATTACCAAAATACCCTCGATAAGT
1 AAAATTACTAAAATA-CCTCGATTTGT
* * *
69928479 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACTAAAATACCTCGA-TTTGT
*
69928506 AAAATTACTAAAATACC-CTGGTTTGT
1 AAAATTACTAAAATACCTC-GATTTGT
* *
69928532 AAAATTACTAAAATACCCTTGGTTTGT
1 AAAATTACTAAAATA-CCTCGATTTGT
* *
69928559 AAAATTACTAAAATACCCCTGACTTGT
1 AAAATTACTAAAATACCTC-GATTTGT
*
69928586 AAAATTACTAAAATACCTCTAATTTGT
1 AAAATTACTAAAATACCTC-GATTTGT
*
69928613 GAAATTA-TCAAAATACTCTCGATTTGT
1 AAAATTACT-AAAATAC-CTCGATTTGT
69928640 A
1 A
69928641 TAATATCGAA
Statistics
Matches: 137, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
26 28 0.20
27 106 0.77
28 3 0.02
ACGTcount: A:0.41, C:0.18, G:0.08, T:0.32
Consensus pattern (26 bp):
AAAATTACTAAAATACCTCGATTTGT
Found at i:69928640 original size:54 final size:53
Alignment explanation
Indices: 69928414--69928640 Score: 235
Period size: 54 Copynumber: 4.2 Consensus size: 53
69928404 ACTGTTTTAT
** * * ** *
69928414 CCTCGATTTACAAAATTATTGAAATACCCTTAGTTTACAAAATTACCAAAATAC
1 CCTCGATTTGTAAAATTACTAAAATACCC-TAGTTTGTAAAATTACTAAAATAC
** *
69928468 CCTCGATAAGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATAC
1 CCTCGATTTGTAAAATTACTAAAATA-CCCTAGTTTGTAAAATTACTAAAATAC
* *
69928522 CCT-GGTTTGTAAAATTACTAAAATACCCTTGGTTTGTAAAATTACTAAAATAC
1 CCTCGATTTGTAAAATTACTAAAATACCC-TAGTTTGTAAAATTACTAAAATAC
* * *
69928575 CC-CTGACTTGTAAAATTACTAAAATACCTCTAATTTGTGAAATTA-TCAAAATAC
1 CCTC-GATTTGTAAAATTACTAAAATACC-CTAGTTTGTAAAATTACT-AAAATAC
*
69928629 TCTCGATTTGTA
1 CCTCGATTTGTA
69928641 TAATATCGAA
Statistics
Matches: 144, Mismatches: 22, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
52 3 0.02
53 44 0.31
54 92 0.64
55 5 0.03
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.33
Consensus pattern (53 bp):
CCTCGATTTGTAAAATTACTAAAATACCCTAGTTTGTAAAATTACTAAAATAC
Found at i:69928653 original size:80 final size:79
Alignment explanation
Indices: 69928425--69928659 Score: 224
Period size: 80 Copynumber: 2.9 Consensus size: 79
69928415 CTCGATTTAC
* * * ** ** *
69928425 AAAATTATTGAAATACCCTTAGTTTACAAAATTACCAAAATACCCTCGATAAGTAAAATTACCAA
1 AAAATTACTAAAATACCC-TAATTTGTAAAATTA-CAAAATACCCTCGATTTGTAAAA-TATCAA
*
69928490 AATACCCCT-AGTTTGT
63 AATACCCCTGAGCTTGT
** * *
69928506 AAAATTACTAAAATACCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTGTAAAAT-TACTAA
1 AAAATTACTAAAATACCCTAATTTGTAAAATTAC-AAAATACCCTCGATTTGTAAAATAT-C-AA
69928570 AATACCCCTGA-CTTGT
63 AATACCCCTGAGCTTGT
* * * *
69928586 AAAATTACTAAAATACCTCTAATTTGTGAAATTATCAAAATACTCTCGATTTGTATAATATCGAA
1 AAAATTACTAAAATACC-CTAATTTGTAAAATTA-CAAAATACCCTCGATTTGTAAAATATCAAA
69928651 ATACCCCTG
64 ATACCCCTG
69928660 TAGGGTAGAA
Statistics
Matches: 128, Mismatches: 19, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
79 3 0.02
80 73 0.57
81 50 0.39
82 2 0.02
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (79 bp):
AAAATTACTAAAATACCCTAATTTGTAAAATTACAAAATACCCTCGATTTGTAAAATATCAAAAT
ACCCCTGAGCTTGT
Found at i:69928653 original size:107 final size:107
Alignment explanation
Indices: 69928425--69928656 Score: 258
Period size: 107 Copynumber: 2.2 Consensus size: 107
69928415 CTCGATTTAC
*
69928425 AAAATTATTGAAATACCCTTAGTTTACAAAATTACCAAAATACCCTCGATAAGTAAAATTACCAA
1 AAAATTACTGAAATACCCTTAGTTTACAAAATTACCAAAATACCCTCGATAAGTAAAATTACCAA
* *
69928490 AATACCCCTAGTTTGTAAAATTACTAAAATACCCTGGTTTGT
66 AATACCCCTAATTTGTAAAATTACTAAAATACCCTGATTTGT
* * ** * * *
69928532 AAAATTACTAAAATACCCTTGGTTTGTAAAATTACTAAAATACCC-CTGACT-TGTAAAATTACT
1 AAAATTACTGAAATACCCTTAGTTTACAAAATTACCAAAATACCCTC-GA-TAAGTAAAATTACC
* * *
69928595 AAAATACCTCTAATTTGTGAAATTA-TCAAAATACTCTCGATTTGT
64 AAAATACCCCTAATTTGTAAAATTACT-AAAATACCCT-GATTTGT
*
69928640 ATAA-TA-TCGAAATACCC
1 AAAATTACT-GAAATACCC
69928657 CTGTAGGGTA
Statistics
Matches: 105, Mismatches: 15, Indels: 10
0.81 0.12 0.08
Matches are distributed among these distances:
106 3 0.03
107 92 0.88
108 10 0.10
ACGTcount: A:0.41, C:0.18, G:0.08, T:0.32
Consensus pattern (107 bp):
AAAATTACTGAAATACCCTTAGTTTACAAAATTACCAAAATACCCTCGATAAGTAAAATTACCAA
AATACCCCTAATTTGTAAAATTACTAAAATACCCTGATTTGT
Found at i:69928719 original size:27 final size:27
Alignment explanation
Indices: 69928647--69928941 Score: 461
Period size: 27 Copynumber: 11.0 Consensus size: 27
69928637 TGTATAATAT
69928647 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
69928674 CGGAATA-CCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
69928700 TGAAATACCCCTATAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
69928727 TGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
69928754 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
69928781 CGGAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
69928808 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
69928835 CTAAATACCCCTGTAAGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
69928862 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
69928889 TGAAATA-CCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * * *
69928915 CGAGATA-CCTTGTAAGGTAAAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
69928941 C
1 C
69928942 ATTTTGCCCC
Statistics
Matches: 249, Mismatches: 18, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
26 65 0.26
27 184 0.74
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:69929383 original size:6 final size:6
Alignment explanation
Indices: 69929343--69929430 Score: 56
Period size: 6 Copynumber: 14.3 Consensus size: 6
69929333 TTGCATTCAC
* * *
69929343 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTT ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
69929392 -TCACCTA ATTCTA ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
69929431 AATGTTTCTT
Statistics
Matches: 64, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
5 4 0.06
6 52 0.81
7 6 0.09
8 2 0.03
ACGTcount: A:0.20, C:0.18, G:0.12, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:69929388 original size:31 final size:31
Alignment explanation
Indices: 69929343--69929446 Score: 104
Period size: 31 Copynumber: 3.4 Consensus size: 31
69929333 TTGCATTCAC
*
69929343 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
* * * * *
69929374 ATTCTTATTCTGATTCTGTCACCTAATTCTA
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
*
69929405 ATTCTGATTCTGATTCTAGTT--CTGATAATG
1 ATTCTGATTCTGATTCT-GTTACCTGATACTG
* *
69929435 TTTCTTATTCTG
1 ATTCTGATTCTG
69929447 TAATGGGTTA
Statistics
Matches: 58, Mismatches: 14, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
30 15 0.26
31 41 0.71
32 2 0.03
ACGTcount: A:0.20, C:0.17, G:0.12, T:0.50
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTG
Found at i:69941572 original size:46 final size:46
Alignment explanation
Indices: 69941522--69941697 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
69941512 TGGTTGAGCA
69941522 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
69941568 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
69941613 CATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
69941661 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69941698 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.57
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:69941678 original size:93 final size:93
Alignment explanation
Indices: 69941519--69941690 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
69941509 GGATGGTTGA
* *
69941519 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
69941584 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
69941612 GCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
69941677 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
69941691 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:69944347 original size:63 final size:63
Alignment explanation
Indices: 69944279--69944403 Score: 241
Period size: 63 Copynumber: 2.0 Consensus size: 63
69944269 ATGTGTAATT
69944279 ATGCAAGAGGGTAAAATTGTGGCTTATACCTCGAGACAATTGAAACCTCACGAGAAAAACTAG
1 ATGCAAGAGGGTAAAATTGTGGCTTATACCTCGAGACAATTGAAACCTCACGAGAAAAACTAG
*
69944342 ATGCAAGAGGGTACAATTGTGGCTTATACCTCGAGACAATTGAAACCTCACGAGAAAAACTA
1 ATGCAAGAGGGTAAAATTGTGGCTTATACCTCGAGACAATTGAAACCTCACGAGAAAAACTA
69944404 TCTAACATAC
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 61 1.00
ACGTcount: A:0.39, C:0.18, G:0.22, T:0.21
Consensus pattern (63 bp):
ATGCAAGAGGGTAAAATTGTGGCTTATACCTCGAGACAATTGAAACCTCACGAGAAAAACTAG
Found at i:69955484 original size:24 final size:23
Alignment explanation
Indices: 69955457--69955507 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 23
69955447 TTTTCTCCTA
*
69955457 AATTTT-AATTTTATTTAATTAATT
1 AATTTTCAA-TTTATTGAATT-ATT
69955481 AATTTTTCAATTTATTGAATTATT
1 AA-TTTTCAATTTATTGAATTATT
69955505 AAT
1 AAT
69955508 ATTTTATACT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
23 1 0.04
24 7 0.29
25 14 0.58
26 2 0.08
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (23 bp):
AATTTTCAATTTATTGAATTATT
Found at i:69956415 original size:21 final size:21
Alignment explanation
Indices: 69956390--69956429 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
69956380 GCAATAAGCT
69956390 GAAGAA-AGCAAGGATCCCAAA
1 GAAGAAGAGCAA-GATCCCAAA
*
69956411 GAAGAAGAGGAAGATCCCA
1 GAAGAAGAGCAAGATCCCA
69956430 CAGAGATCGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.50, C:0.17, G:0.28, T:0.05
Consensus pattern (21 bp):
GAAGAAGAGCAAGATCCCAAA
Found at i:69960367 original size:83 final size:83
Alignment explanation
Indices: 69960228--69960393 Score: 282
Period size: 83 Copynumber: 2.0 Consensus size: 83
69960218 CTATAAAAAA
*
69960228 GAGAGAAACAAAAGGGAGTGAGCATAAAGCTTAGTAAGTTCGCATGTAAATAAATAACAACA-TC
1 GAGAGAAACAAAAGGGAGTAAGCATAAAGCTTAGTAAGTTCGCATGTAAATAAATAACAACAGT-
69960292 CTAAATGAATTATCAAGAT
65 CTAAATGAATTATCAAGAT
*
69960311 GAGAGAAA-AGAAAGGGAGTAAGCATAAAGCTTAGTAAGTTTGCATGTAAATAAATAACAACAGT
1 GAGAGAAACA-AAAGGGAGTAAGCATAAAGCTTAGTAAGTTCGCATGTAAATAAATAACAACAGT
69960375 CTAAATGAATTATCAAGAT
65 CTAAATGAATTATCAAGAT
69960394 AACCTAAACC
Statistics
Matches: 79, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
82 1 0.01
83 77 0.97
84 1 0.01
ACGTcount: A:0.48, C:0.10, G:0.20, T:0.22
Consensus pattern (83 bp):
GAGAGAAACAAAAGGGAGTAAGCATAAAGCTTAGTAAGTTCGCATGTAAATAAATAACAACAGTC
TAAATGAATTATCAAGAT
Found at i:69960568 original size:53 final size:54
Alignment explanation
Indices: 69960504--69960711 Score: 184
Period size: 55 Copynumber: 3.8 Consensus size: 54
69960494 TTCCTTTTTA
* *
69960504 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * * * *
69960557 AACTCACCATTGCCATGCCTTGGCATGGTTTTACATGGGATCTTTTCCTTATCG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * * * *
69960611 TAGTTTATCAATGCCATGTCTTAACATGGTCTTACATGATTTCCTTGCCTTCTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * *
69960666 AACTTACCAAATGTCATGCCTTGGCATGGTTTTACTTGGTATCCTT
1 AACTTACC-AATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
69960712 AAGCCCTAAT
Statistics
Matches: 117, Mismatches: 35, Indels: 4
0.75 0.22 0.03
Matches are distributed among these distances:
53 45 0.38
54 6 0.05
55 66 0.56
ACGTcount: A:0.21, C:0.24, G:0.16, T:0.39
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:69970643 original size:40 final size:39
Alignment explanation
Indices: 69970487--69970648 Score: 141
Period size: 40 Copynumber: 4.1 Consensus size: 39
69970477 AATGATGTCT
* * *
69970487 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGT-ACTATAACC
* *
69970527 GGACTAAGAT-CAGAAGGCATTTGTGCGAGTTACTA-AATCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAG-TACTATAA-CC
* *
69970567 GGGTTAAGTCCCGAAGGCATTTGTGCGATTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGA-GTACTATAACC
* ** *
69970607 GGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTATAACC
69970647 GG
1 GG
69970649 TTAAATTCCG
Statistics
Matches: 99, Mismatches: 15, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
39 4 0.04
40 84 0.85
41 11 0.11
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAACC
Found at i:69970985 original size:49 final size:47
Alignment explanation
Indices: 69970854--69971166 Score: 509
Period size: 47 Copynumber: 6.6 Consensus size: 47
69970844 AAGGGTTGGT
69970854 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
69970901 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
69970948 AATGTGAAAGTGTATATATATGTGATAAGGTCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
69970997 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
69971046 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
69971093 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
69971140 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
69971167 TCTCGAAGGG
Statistics
Matches: 252, Mismatches: 12, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
47 158 0.63
49 94 0.37
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:69971062 original size:96 final size:94
Alignment explanation
Indices: 69970854--69971166 Score: 509
Period size: 96 Copynumber: 3.3 Consensus size: 94
69970844 AAGGGTTGGT
69970854 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
69970919 TGTGATAAGGCCTAATGGCCGATGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
*
69970948 AATGTGAAAGTGTATATATATGTGATAAGGTCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
69971013 TATATGTGATAAGGCCTAATGGCCGATGTGATG
62 TATATGTGATAAGGCCTAATGGCCGATGTGATG
69971046 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * * *
69971111 TGTGACAGGGCCGAGTGGCCAACGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
* *
69971140 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
69971167 TCTCGAAGGG
Statistics
Matches: 205, Mismatches: 10, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
94 66 0.32
96 92 0.45
98 47 0.23
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:69974667 original size:43 final size:44
Alignment explanation
Indices: 69974614--69974702 Score: 153
Period size: 43 Copynumber: 2.0 Consensus size: 44
69974604 GAATCACTTA
*
69974614 CTACGAAGCTTGGAAGCTTGACAAAACCCT-GCTATGAAGAACC
1 CTACAAAGCTTGGAAGCTTGACAAAACCCTAGCTATGAAGAACC
*
69974657 CTACAAAGCTTGGAAGCTTGACAAAACCCTAGCTCTGAAGAACC
1 CTACAAAGCTTGGAAGCTTGACAAAACCCTAGCTATGAAGAACC
69974701 CT
1 CT
69974703 TGAAATTTCA
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
43 29 0.67
44 14 0.33
ACGTcount: A:0.35, C:0.27, G:0.19, T:0.19
Consensus pattern (44 bp):
CTACAAAGCTTGGAAGCTTGACAAAACCCTAGCTATGAAGAACC
Found at i:69976234 original size:46 final size:46
Alignment explanation
Indices: 69976132--69976296 Score: 176
Period size: 46 Copynumber: 3.6 Consensus size: 46
69976122 TTATTTGTGT
* * * *
69976132 GCCAGTGTAAGACATGTCTGGGACATGGCATCGGCATTGAGACG-AGA
1 GCCAATGTAAGACATGTCTAGGACAT-GCATCGGCCTTGAGATGTA-A
* *
69976179 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTTGAGATGTAA
1 GCCAATGTAAGACATGTCTAGGACATGCATCGGCCTTGAGATGTAA
* **
69976225 GCCAATGTAAGACATGTCTAGGACATGCATCAG-CTACAAGATGT--
1 GCCAATGTAAGACATGTCTAGGACATGCATCGGCCT-TGAGATGTAA
*
69976269 GTCAATGTAAGACCATGTCTAGGACATG
1 GCCAATGTAAGA-CATGTCTAGGACATG
69976297 GCATTGGCAC
Statistics
Matches: 105, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
44 11 0.10
45 17 0.16
46 52 0.50
47 25 0.24
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (46 bp):
GCCAATGTAAGACATGTCTAGGACATGCATCGGCCTTGAGATGTAA
Found at i:69976330 original size:48 final size:49
Alignment explanation
Indices: 69976230--69976392 Score: 164
Period size: 48 Copynumber: 3.4 Consensus size: 49
69976220 TGTAAGCCAA
* *
69976230 TGTAAGA-CATGTCTAGGACAT-GCATCAGCTACAAGA--T--GTGTCAA
1 TGTAAGACCATGTCTAGGACATGGCATCAGC-ACAATATGTGAGTGTCAG
** *
69976274 TGTAAGACCATGTCTAGGACATGGCATTGGCAC-GTATG-GAGGTGTCAG
1 TGTAAGACCATGTCTAGGACATGGCATCAGCACAATATGTGA-GTGTCAG
* *
69976322 TGTAAGACCATGTCTGGGACATGGCATCAGCACAAATATGTGAGAG-CTAG
1 TGTAAGACCATGTCTAGGACATGGCATCAGCAC-AATATGTGAGTGTC-AG
69976372 TGTAAGACCATGTCTAGGACA
1 TGTAAGACCATGTCTAGGACA
69976393 GGGTGTCAGC
Statistics
Matches: 97, Mismatches: 11, Indels: 16
0.78 0.09 0.13
Matches are distributed among these distances:
44 8 0.08
45 16 0.16
46 6 0.06
48 36 0.37
49 1 0.01
50 28 0.29
51 2 0.02
ACGTcount: A:0.31, C:0.18, G:0.28, T:0.24
Consensus pattern (49 bp):
TGTAAGACCATGTCTAGGACATGGCATCAGCACAATATGTGAGTGTCAG
Found at i:69979098 original size:80 final size:80
Alignment explanation
Indices: 69979009--69979179 Score: 315
Period size: 80 Copynumber: 2.1 Consensus size: 80
69978999 GAAATGATTA
69979009 GAGCCGAATGTGGCTAAATTATTAATCCGAAATAGACATAGAAATATAATATGCTGCATGTGTGT
1 GAGCCGAATGTGGCTAAATTATTAATCCGAAATAGACATAGAAATATAATATGCTGCATGTGTGT
69979074 TTGAATAAATAAATT
66 TTGAATAAATAAATT
* *
69979089 GAGCTGAATGTGGCTAAATTATTAATCCGAAATAGACATAGAAATATAATATGTTGCATGTGTGT
1 GAGCCGAATGTGGCTAAATTATTAATCCGAAATAGACATAGAAATATAATATGCTGCATGTGTGT
69979154 TTGAATAAATAAATT
66 TTGAATAAATAAATT
*
69979169 AAGCCGAATGT
1 GAGCCGAATGT
69979180 AGTTATACTT
Statistics
Matches: 87, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
80 87 1.00
ACGTcount: A:0.40, C:0.09, G:0.19, T:0.32
Consensus pattern (80 bp):
GAGCCGAATGTGGCTAAATTATTAATCCGAAATAGACATAGAAATATAATATGCTGCATGTGTGT
TTGAATAAATAAATT
Found at i:69983928 original size:40 final size:40
Alignment explanation
Indices: 69983883--69984267 Score: 628
Period size: 40 Copynumber: 9.6 Consensus size: 40
69983873 CAAGCTCAAT
* * * * * *
69983883 TGCCTTCGGGTCTTAACCTGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
69983923 TGCCTTCGGGTCTTAGCCCGGATATATCAACTT-GCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAA-TTCGCACAAA
69983963 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
69984003 CGCCATCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
69984043 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
69984083 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
69984123 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
69984163 TGCCTTCAGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
69984203 TGCCTTCGGGTCTAAACCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
69984243 TGCCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
69984268 CATTCAAATG
Statistics
Matches: 323, Mismatches: 20, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
39 2 0.01
40 320 0.99
41 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
Found at i:69985695 original size:27 final size:27
Alignment explanation
Indices: 69985665--69985842 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
69985655 ATATTGAGTC
* * * *
69985665 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
69985692 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
69985719 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
69985747 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
69985774 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
69985801 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
69985828 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
69985843 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:69985804 original size:82 final size:81
Alignment explanation
Indices: 69985686--69985841 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
69985676 TGCTATATAA
* *
69985686 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
69985751 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
69985768 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
69985832 CACTTAGTGC
65 CACTTAGTGC
69985842 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:69993760 original size:27 final size:27
Alignment explanation
Indices: 69993730--69993907 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
69993720 ATATTGAGTC
* * *
69993730 CGCACACTCAGTGATATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
69993757 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
69993784 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
69993812 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
69993839 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
69993866 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
69993893 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
69993908 GTACAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:69993871 original size:82 final size:81
Alignment explanation
Indices: 69993751--69993906 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
69993741 TGATATATAA
* *
69993751 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
69993816 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
69993833 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
69993897 CACTTAGTGC
65 CACTTAGTGC
69993907 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:70005804 original size:40 final size:40
Alignment explanation
Indices: 70005759--70006063 Score: 477
Period size: 40 Copynumber: 7.6 Consensus size: 40
70005749 CAAGCTCAAT
* * * * * *
70005759 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGTACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
70005799 TGCCTTCGGGTCTTAGCCCGGATATATCAACTT-GCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAA-TTCGCACAAA
70005839 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
70005879 CGCCATCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
70005919 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
70005959 TGCCTTCGGCTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
70005999 TGCCTTCGGGTCTAAACCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
70006039 TGCCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
70006064 CATTCAAATG
Statistics
Matches: 243, Mismatches: 20, Indels: 4
0.91 0.07 0.01
Matches are distributed among these distances:
39 2 0.01
40 240 0.99
41 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.27
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
Found at i:70011691 original size:29 final size:29
Alignment explanation
Indices: 70011659--70011717 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
70011649 TTTGAGCTTT
70011659 GGGGAAAAAGTGTAAATATGCAAAAGTTA
1 GGGGAAAAAGTGTAAATATGCAAAAGTTA
* * * *
70011688 GGGGCAAAATTGTAATTTTGCAAAAGTTA
1 GGGGAAAAAGTGTAAATATGCAAAAGTTA
70011717 G
1 G
70011718 AGTTAAGGAC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.42, C:0.05, G:0.27, T:0.25
Consensus pattern (29 bp):
GGGGAAAAAGTGTAAATATGCAAAAGTTA
Found at i:70013264 original size:27 final size:27
Alignment explanation
Indices: 70013234--70013336 Score: 116
Period size: 27 Copynumber: 3.8 Consensus size: 27
70013224 ATTACCAAAG
* * *
70013234 TACCCCCGATTTACAGAATTATCGTTC
1 TACCCTCGATTTACAGAATTACCATTC
* *
70013261 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTC
* * *
70013288 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTC
* *
70013315 TACCCTCAATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
70013337 TAAAATACCC
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 68 1.00
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.37
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTC
Found at i:70013345 original size:27 final size:27
Alignment explanation
Indices: 70013261--70013679 Score: 145
Period size: 27 Copynumber: 15.4 Consensus size: 27
70013251 ATTATCGTTC
* * ***
70013261 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAAAATTACTAAAA
* ***
70013288 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTATAAAATTACTAAAA
* *
70013315 TACCCTCAATTTACAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* *
70013342 TACCC-CTGGTTTGTAAAATTACTAAAA
1 TACCCTC-GATTTATAAAATTACTAAAA
* * * * *
70013369 TACCCCCTAATTTGTAAAATCATTAAAA
1 TACCCTC-GATTTATAAAATTACTAAAA
* *
70013397 TACCCTCGACTTGTA-AAAATTACCAAAG
1 TACCCTCGA-TT-TATAAAATTACTAAAA
* * ***
70013425 TACCCTCGATTTATAGAATTATTATTT
1 TACCCTCGATTTATAAAATTACTAAAA
* * ***
70013452 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTATAAAATTACTAAAA
* * ***
70013479 TACCCTTGATTTACAAAATTAC-AGTTT
1 TACCCTCGATTTATAAAATTACTA-AAA
* * *
70013506 TACCCTCGA-TTGTGAAATTACTGAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* *** * *
70013532 TACCC-CTATAGGGTAGAATTACCAAAA
1 TACCCTCGAT-TTATAAAATTACTAAAA
* * * *
70013559 CACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACTAAAA
* * * **
70013586 TACCACT-GGTTTGTGAAATTACCGAAA
1 TACC-CTCGATTTATAAAATTACTAAAA
* * *
70013613 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* *
70013640 TACCC-CTAATTTACAAAAATTAC-AGAAA
1 TACCCTC-GATTTA-TAAAATTACTA-AAA
*
70013668 TACCCTTGATTT
1 TACCCTCGATTT
70013680 GTAGATTTAC
Statistics
Matches: 311, Mismatches: 64, Indels: 33
0.76 0.16 0.08
Matches are distributed among these distances:
25 2 0.01
26 21 0.07
27 221 0.71
28 66 0.21
29 1 0.00
ACGTcount: A:0.37, C:0.21, G:0.08, T:0.33
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACTAAAA
Found at i:70013346 original size:54 final size:54
Alignment explanation
Indices: 70013216--70013500 Score: 151
Period size: 54 Copynumber: 5.2 Consensus size: 54
70013206 AATACTTTAG
* * * * * * * *
70013216 TTTACCAAATTACCAAAGTACCCCCGATTTACAGAATTATCGTTCTACCCTCGA
1 TTTACAAAATTACTAAAATACCCTCGATTTACAAAATTACCATTTTACCCTCGA
* * * *** * *
70013270 TTTATAGAATTACCATTTTACCCTCGATTTATAAAATTACCATTTTACCCTCAA
1 TTTACAAAATTACTAAAATACCCTCGATTTACAAAATTACCATTTTACCCTCGA
* ** * *** * *
70013324 TTTACAAAATTACTAAAATACCC-CTGGTTTGTAAAATTACTAAAATACCCCCTAA
1 TTTACAAAATTACTAAAATACCCTC-GATTTACAAAATTACCATTTTACCCTC-GA
** * * ***
70013379 TTTGTAAAATCATTAAAATACCCTCGACTTGTA-AAAATTACCAAAGTACCCTCGA
1 TTTACAAAATTACTAAAATACCCTCGA-TT-TACAAAATTACCATTTTACCCTCGA
* * * *** * * *
70013434 TTTATAGAATTATTATTTTACCCTCGATTTACAGAATTACTATTTTACCCTTGA
1 TTTACAAAATTACTAAAATACCCTCGATTTACAAAATTACCATTTTACCCTCGA
70013488 TTTACAAAATTAC
1 TTTACAAAATTAC
70013501 AGTTTTACCC
Statistics
Matches: 174, Mismatches: 51, Indels: 12
0.73 0.22 0.05
Matches are distributed among these distances:
53 3 0.02
54 106 0.61
55 44 0.25
56 20 0.11
57 1 0.01
ACGTcount: A:0.36, C:0.22, G:0.07, T:0.35
Consensus pattern (54 bp):
TTTACAAAATTACTAAAATACCCTCGATTTACAAAATTACCATTTTACCCTCGA
Found at i:70013384 original size:28 final size:28
Alignment explanation
Indices: 70013329--70013401 Score: 103
Period size: 28 Copynumber: 2.6 Consensus size: 28
70013319 CTCAATTTAC
**
70013329 AAAATTACTAAAATA-CCCCTGGTTTGT
1 AAAATTACTAAAATACCCCCTAATTTGT
70013356 AAAATTACTAAAATACCCCCTAATTTGT
1 AAAATTACTAAAATACCCCCTAATTTGT
* *
70013384 AAAATCATTAAAATACCC
1 AAAATTACTAAAATACCC
70013402 TCGACTTGTA
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
27 15 0.37
28 26 0.63
ACGTcount: A:0.44, C:0.21, G:0.05, T:0.30
Consensus pattern (28 bp):
AAAATTACTAAAATACCCCCTAATTTGT
Found at i:70013680 original size:55 final size:54
Alignment explanation
Indices: 70013568--70013699 Score: 147
Period size: 55 Copynumber: 2.4 Consensus size: 54
70013558 ACACCCCTAG
* ** *** *
70013568 TTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAA
1 TTTGTAAAATTACCAAAATACCCCTAATTTCAAAAATTACAGAAATACCCTCAA
**
70013622 TTTGTAAAATTACCAAAATACCCCTAATTTACAAAAATTACAGAAATACCCTTGA
1 TTTGTAAAATTACCAAAATACCCCTAATTT-CAAAAATTACAGAAATACCCTCAA
* * *
70013677 TTTGTAGATTTACCAAAACACCC
1 TTTGTAAAATTACCAAAATACCC
70013700 TTGTAGGATG
Statistics
Matches: 65, Mismatches: 12, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
54 27 0.42
55 38 0.58
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (54 bp):
TTTGTAAAATTACCAAAATACCCCTAATTTCAAAAATTACAGAAATACCCTCAA
Found at i:70014529 original size:20 final size:20
Alignment explanation
Indices: 70014504--70014590 Score: 131
Period size: 20 Copynumber: 4.3 Consensus size: 20
70014494 GATATGATAT
*
70014504 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
*
70014524 ACATGATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
*
70014544 ATATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
70014564 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
70014584 ACATGAT
1 ACATGAT
70014591 GTATTCATAA
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
20 59 0.97
21 2 0.03
ACGTcount: A:0.40, C:0.09, G:0.18, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:70014669 original size:26 final size:26
Alignment explanation
Indices: 70014640--70014827 Score: 240
Period size: 26 Copynumber: 7.3 Consensus size: 26
70014630 GAGGTAGTGC
* *
70014640 AAAAGGGCTTATTCCCCGGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
70014666 AAAAGGGCTTATGCCCCAATTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
70014692 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
70014718 AAAAGGGCTTATTCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
70014744 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
70014770 AAAAGGGCTT-TGCCCCAATTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
70014795 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
70014818 AAAAGAGGCT
1 AAAAG-GGCT
70014828 AGGCCTCCAG
Statistics
Matches: 145, Mismatches: 16, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
23 5 0.03
24 7 0.05
25 29 0.20
26 104 0.72
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:70014702 original size:52 final size:52
Alignment explanation
Indices: 70014640--70014827 Score: 267
Period size: 52 Copynumber: 3.7 Consensus size: 52
70014630 GAGGTAGTGC
* * **
70014640 AAAAGGGCTTATTCCCCGGTTTATTGAAAAGGGCTTATGCCCCAATTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAATTTACCG
** * *
70014692 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATTCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAATTTACCG
70014744 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAATTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAATTTACCG
70014795 AAAAGGGCTT-TGCCCCAG-TTATT-AAAAGAGGCT
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAG-GGCT
70014828 AGGCCTCCAG
Statistics
Matches: 123, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
48 5 0.04
49 9 0.07
50 8 0.07
51 23 0.19
52 78 0.63
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAATTTACCG
Found at i:70014769 original size:78 final size:77
Alignment explanation
Indices: 70014640--70014814 Score: 280
Period size: 78 Copynumber: 2.3 Consensus size: 77
70014630 GAGGTAGTGC
* **
70014640 AAAAGGGCTTATTCCCCGGTTTATTGAAAAGGGCTTATGCCCCAATTTATTGAAAAGGGCTTATG
1 AAAAGGGCTTATTCCCCAGTTTACCGAAAAGGGCTTATGCCCCAATTTATTGAAAAGGGCTT-TG
*
70014705 CCCCAGTTTACCG
65 CCCCAATTTACCG
*
70014718 AAAAGGGCTTATTCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGC
1 AAAAGGGCTTATTCCCCAGTTTACCGAAAAGGGCTTATGCCCCAATTTATTGAAAAGGGCTTTGC
70014783 CCCAATTTACCG
66 CCCAATTTACCG
*
70014795 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATTCCCCAGTT
70014815 ATTAAAAGAG
Statistics
Matches: 91, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
76 9 0.10
77 24 0.26
78 58 0.64
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (77 bp):
AAAAGGGCTTATTCCCCAGTTTACCGAAAAGGGCTTATGCCCCAATTTATTGAAAAGGGCTTTGC
CCCAATTTACCG
Found at i:70015019 original size:42 final size:42
Alignment explanation
Indices: 70014960--70015051 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
70014950 TAGTCTCCCC
* ** *
70014960 AAATGGGCTTGCATACATTCATTGGTATTTCATATGACATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGACATTG
* *
70015002 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGACATTG
70015044 AAATGGGC
1 AAATGGGC
70015052 CTATGGGCCA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATATGACATTG
Found at i:70015110 original size:31 final size:31
Alignment explanation
Indices: 70015075--70015155 Score: 146
Period size: 31 Copynumber: 2.6 Consensus size: 31
70015065 CGTTTACAGT
70015075 AAAGGCTTCGGCCCAGTGAA-ATGATTTATGA
1 AAAGGCTTCGGCCCAGT-AATATGATTTATGA
70015106 AAAGGCTTCGGCCCAGTAATATGATTTATGA
1 AAAGGCTTCGGCCCAGTAATATGATTTATGA
70015137 AAAGGCTTCGGCCCAGTAA
1 AAAGGCTTCGGCCCAGTAA
70015156 CCGTTAAACG
Statistics
Matches: 49, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
30 2 0.04
31 47 0.96
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGATTTATGA
Found at i:70018211 original size:26 final size:26
Alignment explanation
Indices: 70018175--70018227 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
70018165 GGTCGAAACG
70018175 ATTGTATGAACATAGTTAACATTCTT
1 ATTGTATGAACATAGTTAACATTCTT
70018201 ATTGTATGAACATAGTTAACATTCTT
1 ATTGTATGAACATAGTTAACATTCTT
70018227 A
1 A
70018228 CACATTCGGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.36, C:0.11, G:0.11, T:0.42
Consensus pattern (26 bp):
ATTGTATGAACATAGTTAACATTCTT
Found at i:70023998 original size:20 final size:20
Alignment explanation
Indices: 70023973--70024011 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
70023963 ATGATAGGGT
70023973 TTGTTTTAAATGTGAATCAC
1 TTGTTTTAAATGTGAATCAC
*
70023993 TTGTTTTAAATGTGGATCA
1 TTGTTTTAAATGTGAATCA
70024012 TTATATCATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.08, G:0.18, T:0.46
Consensus pattern (20 bp):
TTGTTTTAAATGTGAATCAC
Found at i:70030880 original size:27 final size:27
Alignment explanation
Indices: 70030695--70030877 Score: 208
Period size: 27 Copynumber: 6.7 Consensus size: 27
70030685 AAATTGTACA
*
70030695 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* * *
70030722 GCACTAAGTGTGCGAAATGAATATGTT
1 GCACTAAGTGTGCGAATTGACTATGTG
* *
70030749 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
70030776 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
70030803 GCACTAAGTGTGCGAGTCTGACTATGTG
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
70030831 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
70030858 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
70030878 TTATATATCA
Statistics
Matches: 139, Mismatches: 13, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
27 112 0.81
28 27 0.19
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:70030889 original size:27 final size:27
Alignment explanation
Indices: 70030696--70030898 Score: 171
Period size: 27 Copynumber: 7.5 Consensus size: 27
70030686 AATTGTACAG
70030696 CACTAAGTGTGCG-ATTCGACTATGT-T
1 CACTAAGTGTGCGAATT-GACTATGTGT
* *
70030722 GCACTAAGTGTGCGAAATGAATATGT-T
1 -CACTAAGTGTGCGAATTGACTATGTGT
* *
70030749 GCACTAAGTGTGCGAAATGAATATGATG-
1 -CACTAAGTGTGCGAATTGACTATG-TGT
* * *
70030777 CACTAAGTGTGCGAATTGACCATGCGG
1 CACTAAGTGTGCGAATTGACTATGTGT
* *
70030804 CACTAAGTGTGCGAGTCTGACTATGTGG
1 CACTAAGTGTGCGAAT-TGACTATGTGT
* * * *
70030832 CACTAAGTGTGCGATTTGATTACGTGG
1 CACTAAGTGTGCGAATTGACTATGTGT
* * * *
70030859 CACTAAGTGTGCGAGTTGATTATATAT
1 CACTAAGTGTGCGAATTGACTATGTGT
*
70030886 CACTGAGTGTGCG
1 CACTAAGTGTGCG
70030899 GGCTCAATAT
Statistics
Matches: 153, Mismatches: 18, Indels: 10
0.85 0.10 0.06
Matches are distributed among these distances:
26 1 0.01
27 125 0.82
28 27 0.18
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
CACTAAGTGTGCGAATTGACTATGTGT
Found at i:70033985 original size:53 final size:53
Alignment explanation
Indices: 70033803--70034009 Score: 216
Period size: 53 Copynumber: 3.8 Consensus size: 53
70033793 ATTAGGGTTT
* * * * *
70033803 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGC
* * * * * * * *
70033857 AAGGAAATCATGTAAGACCATGTCAAGATATGGCATTGATAAACTACGATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * * *
70033912 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* *
70033965 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
70034010 TAAAAAGGAA
Statistics
Matches: 122, Mismatches: 29, Indels: 5
0.78 0.19 0.03
Matches are distributed among these distances:
53 46 0.38
54 37 0.30
55 39 0.32
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.20
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:70042172 original size:41 final size:41
Alignment explanation
Indices: 70042039--70042262 Score: 278
Period size: 40 Copynumber: 5.6 Consensus size: 41
70042029 AACCCAAGTA
* * * *
70042039 CCTTCGGGATTTA-ACCGGATATAG-CA-AATCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACA-AAATG
* *
70042078 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCAC-AAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAATG
*
70042118 CCTTCGGGACTTAGCCCAGATATAGTCACTAGCACAAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAATG
* * * *
70042159 CCTTCAGGTCTTAGCCCGGATATCGCCACTAGCAC-AAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAATG
* *
70042199 CCTTCGGGACTTAACCCGGATATAGTCACTAGCACAAAGTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAATG
*
70042240 CCTTCGGGTCTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
70042263 CATCTGAATA
Statistics
Matches: 158, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
39 12 0.08
40 82 0.52
41 61 0.39
42 3 0.02
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (41 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAATG
Found at i:70042263 original size:81 final size:80
Alignment explanation
Indices: 70042039--70042263 Score: 303
Period size: 81 Copynumber: 2.8 Consensus size: 80
70042029 AACCCAAGTA
* * *
70042039 CCTTCGGGATTTAA-CCGGATATAG-CAAATCA-CACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAACCCGGATATAGTC-ACT-AGCACAAATGCCTTCGGGTCTTAGCCCGGATAT
* * *
70042101 AGTAACTCGCACAAATG
64 CGCAACTAGCACAAATG
* * *
70042118 CCTTCGGGACTTAGCCCAGATATAGTCACTAGCACAAAATGCCTTCAGGTCTTAGCCCGGATATC
1 CCTTCGGGACTTAACCCGGATATAGTCACTAGCAC-AAATGCCTTCGGGTCTTAGCCCGGATATC
*
70042183 GCCACTAGCACAAATG
65 GCAACTAGCACAAATG
70042199 CCTTCGGGACTTAACCCGGATATAGTCACTAGCACAAAGTGCCTTCGGGTCTTAGCCCGGATATC
1 CCTTCGGGACTTAACCCGGATATAGTCACTAGCACAAA-TGCCTTCGGGTCTTAGCCCGGATATC
70042264 ATCTGAATAA
Statistics
Matches: 128, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
79 13 0.10
80 17 0.13
81 98 0.77
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAACCCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATCG
CAACTAGCACAAATG
Found at i:70049701 original size:41 final size:40
Alignment explanation
Indices: 70049570--70049793 Score: 306
Period size: 40 Copynumber: 5.6 Consensus size: 40
70049560 AACCGAAGTA
* * * *
70049570 CCTTCGGGATTTA-ACCGGATATAGCAAATCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
70049609 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
70049649 CCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCAC-AAATG
* * *
70049690 CCTTCGGGACTTAGCCCGGATATCGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
70049730 CCTTCGGGACTTAACCCGGATATAGTCACTAGCACAAACTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAA-TG
* *
70049771 CCTTCGGGTCGTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
70049794 CATCCGACTA
Statistics
Matches: 168, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 12 0.07
40 98 0.58
41 58 0.35
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:70049794 original size:81 final size:80
Alignment explanation
Indices: 70049570--70049794 Score: 310
Period size: 81 Copynumber: 2.8 Consensus size: 80
70049560 AACCGAAGTA
* * *
70049570 CCTTCGGGATTTAA-CCGGATATAG-CAAATCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
1 CCTTCGGGACTTAACCCGGATATAGTC-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATC
*
70049633 GTAACTCGCACAAATG
65 GTAACTAGCACAAATG
* * *
70049649 CCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAAATGCCTTCGGGACTTAGCCCGGATATC
1 CCTTCGGGACTTAACCCGGATATAGTCACTCGCAC-AAATGCCTTCGGGACTTAGCCCGGATATC
*
70049714 GTCACTAGCACAAATG
65 GTAACTAGCACAAATG
* * *
70049730 CCTTCGGGACTTAACCCGGATATAGTCACTAGCACAAACTGCCTTCGGGTCGTAGCCCGGATATC
1 CCTTCGGGACTTAACCCGGATATAGTCACTCGCACAAA-TGCCTTCGGGACTTAGCCCGGATATC
70049795 ATCCGACTAA
Statistics
Matches: 128, Mismatches: 14, Indels: 6
0.86 0.09 0.04
Matches are distributed among these distances:
79 11 0.09
80 20 0.16
81 97 0.76
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAACCCGGATATAGTCACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATCG
TAACTAGCACAAATG
Found at i:70052281 original size:53 final size:53
Alignment explanation
Indices: 70052106--70052309 Score: 131
Period size: 53 Copynumber: 3.8 Consensus size: 53
70052096 AGGGTTTAAG
* * * * * * * *
70052106 GATACCAAGTAAGACCATGTCAAGGCATGGCATTGGTAAGTTTTACAAGGCAAG
1 GATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGAAAA
* * * * * ** ** * *
70052160 GAAATCATGTAAAACCATGTCAAGACATGGCCTTAATAAACTATGATAAGGAAAA
1 GATACCACGTAAGACCATGCCAAGACATGGCAATGGT-AAGT-TCATAAGGAAAA
* * * * *
70052215 GATCCCATGTAAGACCATGCCAACG-CATGGCAATGGTGAGTTCATAAGGCAAG
1 GATACCACGTAAGACCATGCCAA-GACATGGCAATGGTAAGTTCATAAGGAAAA
* *
70052268 GATACCACGTAAGATCATGTCAAGACATGGCAATGGTAAGTT
1 GATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
70052310 TAAAAAGGAA
Statistics
Matches: 114, Mismatches: 32, Indels: 9
0.74 0.21 0.06
Matches are distributed among these distances:
52 1 0.01
53 44 0.39
54 32 0.28
55 36 0.32
56 1 0.01
ACGTcount: A:0.38, C:0.18, G:0.23, T:0.22
Consensus pattern (53 bp):
GATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGAAAA
Found at i:70056913 original size:26 final size:26
Alignment explanation
Indices: 70056882--70056989 Score: 164
Period size: 26 Copynumber: 4.2 Consensus size: 26
70056872 TGAAATGCCC
70056882 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
70056908 ATCATGGAACATTTACCT-AACTCATT
1 ATCATGGAACATTTACCTAAAC-CATT
* * *
70056934 ATCATGGAATATTTACCTAATCTATT
1 ATCATGGAACATTTACCTAAACCATT
*
70056960 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
70056986 ATCA
1 ATCA
70056990 ATTTATACCA
Statistics
Matches: 74, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
25 3 0.04
26 69 0.93
27 2 0.03
ACGTcount: A:0.36, C:0.22, G:0.07, T:0.34
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:70058679 original size:17 final size:17
Alignment explanation
Indices: 70058657--70058699 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
70058647 ATTTCATTTA
**
70058657 AAATGTCAATTTCCATC
1 AAATGTCAATTAACATC
*
70058674 AAATGTCCATTAACATC
1 AAATGTCAATTAACATC
70058691 AAAT-TCAAT
1 AAATGTCAAT
70058700 ACAATCATAG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.42, C:0.21, G:0.05, T:0.33
Consensus pattern (17 bp):
AAATGTCAATTAACATC
Found at i:70063232 original size:19 final size:19
Alignment explanation
Indices: 70063205--70063245 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
70063195 CTATAGCCTA
*
70063205 ATTTGCATGATAGAATCAG
1 ATTTACATGATAGAATCAG
*
70063224 ATTTACATGCTAGAATCAG
1 ATTTACATGATAGAATCAG
70063243 ATT
1 ATT
70063246 GATACAGATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.37, C:0.12, G:0.17, T:0.34
Consensus pattern (19 bp):
ATTTACATGATAGAATCAG
Found at i:70064144 original size:20 final size:20
Alignment explanation
Indices: 70064072--70064144 Score: 53
Period size: 20 Copynumber: 3.7 Consensus size: 20
70064062 TTGGTAAAAC
*
70064072 TTTTATATATTTATTTC-CAT
1 TTTTATATATTT-TTTCAAAT
* * *
70064092 TTTTATA-ATCTTCT-AAAA
1 TTTTATATATTTTTTCAAAT
* *
70064110 TTATATATAACTTTTTCAAAT
1 TTTTATAT-ATTTTTTCAAAT
70064131 TTTTATATATTTTT
1 TTTTATATATTTTT
70064145 ATTTCCATTT
Statistics
Matches: 38, Mismatches: 11, Indels: 8
0.67 0.19 0.14
Matches are distributed among these distances:
18 9 0.24
19 3 0.08
20 16 0.42
21 10 0.26
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.60
Consensus pattern (20 bp):
TTTTATATATTTTTTCAAAT
Found at i:70064715 original size:27 final size:28
Alignment explanation
Indices: 70064673--70064731 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
70064663 ATTAGTAAAA
70064673 AGGGCCACTTTAAAAAAAATAGCGATTT
1 AGGGCCACTTTAAAAAAAATAGCGATTT
70064701 AGGGCCACTTTAAAAAAAATAGCGATTT
1 AGGGCCACTTTAAAAAAAATAGCGATTT
70064729 AGG
1 AGG
70064732 TTATTATTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.42, C:0.14, G:0.20, T:0.24
Consensus pattern (28 bp):
AGGGCCACTTTAAAAAAAATAGCGATTT
Found at i:70065304 original size:15 final size:16
Alignment explanation
Indices: 70065281--70065318 Score: 53
Period size: 14 Copynumber: 2.5 Consensus size: 16
70065271 AAATATCAAC
*
70065281 TAATTTTTTTT-GATA
1 TAATTTTTTTTATATA
70065296 T-ATTTTTTTTATATA
1 TAATTTTTTTTATATA
70065311 TAATTTTT
1 TAATTTTT
70065319 ATACGTTAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
14 9 0.45
15 5 0.25
16 6 0.30
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (16 bp):
TAATTTTTTTTATATA
Found at i:70065704 original size:19 final size:17
Alignment explanation
Indices: 70065668--70065723 Score: 69
Period size: 17 Copynumber: 3.3 Consensus size: 17
70065658 CCCGAGATTG
70065668 AAAATATATAATACTAA
1 AAAATATATAATACTAA
**
70065685 AAAATATATAAATA-TTT
1 AAAATATAT-AATACTAA
*
70065702 AAAATATATAATGCTAA
1 AAAATATATAATACTAA
70065719 AAAAT
1 AAAAT
70065724 CATTTCAAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
16 3 0.09
17 25 0.78
18 4 0.12
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.32
Consensus pattern (17 bp):
AAAATATATAATACTAA
Found at i:70066010 original size:69 final size:67
Alignment explanation
Indices: 70065933--70066063 Score: 176
Period size: 69 Copynumber: 1.9 Consensus size: 67
70065923 TTATGTACTC
* * *
70065933 AAAAATAATTATATTTGAACTAATTGATTGACTTTAT-ATATTAG-ATTTACCATACCCACGATG
1 AAAAATAATGATATTTGAAATAATT-ATT---TTTATAATATTAGAATTTACCATACCCACAATG
70065996 TAGGTG
62 TAGGTG
*
70066002 AAAAATAATGATATTTGAAATAATTATTTTTATAATATTAGAATTTACCATACTCACAATGT
1 AAAAATAATGATATTTGAAATAATTATTTTTATAATATTAGAATTTACCATACCCACAATGT
70066064 GTATGAAAAA
Statistics
Matches: 56, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
65 5 0.09
66 7 0.12
67 18 0.32
68 3 0.05
69 23 0.41
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.39
Consensus pattern (67 bp):
AAAAATAATGATATTTGAAATAATTATTTTTATAATATTAGAATTTACCATACCCACAATGTAGG
TG
Found at i:70066083 original size:67 final size:67
Alignment explanation
Indices: 70065933--70066086 Score: 163
Period size: 67 Copynumber: 2.2 Consensus size: 67
70065923 TTATGTACTC
* *
70065933 AAAAATAATTATATTTGAACTAATTGATTGACTTTATATATTAGATTTACCATACCCACGATGTA
1 AAAAATAA--ATATTTGAAATAATTGATT-A-TTTATATATTAGATTTACCATACCCACAATGTA
*
70065998 GGTGAA
62 GATGAA
* *
70066004 AAATAAT-GATATTTGAAATAATT-ATT-TTTATAATATTAGAATTTACCATACTCACAATGT-G
1 AAA-AATAAATATTTGAAATAATTGATTATTTAT-ATATTAG-ATTTACCATACCCACAATGTAG
70066065 TATGAA
63 -ATGAA
70066071 AAAAATAAATATTTGA
1 AAAAATAAATATTTGA
70066087 CATATAAAAA
Statistics
Matches: 72, Mismatches: 6, Indels: 14
0.78 0.07 0.15
Matches are distributed among these distances:
65 5 0.07
66 11 0.15
67 33 0.46
68 3 0.04
69 14 0.19
71 3 0.04
72 3 0.04
ACGTcount: A:0.44, C:0.08, G:0.10, T:0.38
Consensus pattern (67 bp):
AAAAATAAATATTTGAAATAATTGATTATTTATATATTAGATTTACCATACCCACAATGTAGATG
AA
Found at i:70067997 original size:6 final size:6
Alignment explanation
Indices: 70067988--70068028 Score: 64
Period size: 6 Copynumber: 6.7 Consensus size: 6
70067978 ATACAGTTTT
*
70067988 AGATTC AGATTC AGATATC AGATTC AGATTC AAATTC AGAT
1 AGATTC AGATTC AGAT-TC AGATTC AGATTC AGATTC AGAT
70068029 AGCAGATATG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
6 26 0.81
7 6 0.19
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.32
Consensus pattern (6 bp):
AGATTC
Found at i:70068012 original size:19 final size:18
Alignment explanation
Indices: 70067988--70068028 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 18
70067978 ATACAGTTTT
*
70067988 AGATTCAGATTCAGATATC
1 AGATTCAGATTCAAAT-TC
70068007 AGATTCAGATTCAAATTC
1 AGATTCAGATTCAAATTC
70068025 AGAT
1 AGAT
70068029 AGCAGATATG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.32
Consensus pattern (18 bp):
AGATTCAGATTCAAATTC
Found at i:70068018 original size:25 final size:24
Alignment explanation
Indices: 70067975--70068035 Score: 77
Period size: 25 Copynumber: 2.5 Consensus size: 24
70067965 CAGTCTGAAA
* * *
70067975 CAGATACAGTTTTAGATTCAGATT
1 CAGATACAGATTCAGATTCAAATT
70067999 CAGATATCAGATTCAGATTCAAATT
1 CAGATA-CAGATTCAGATTCAAATT
70068024 CAGATAGCAGAT
1 CAGATA-CAGAT
70068036 ATGCAAAACT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
24 6 0.19
25 26 0.81
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.31
Consensus pattern (24 bp):
CAGATACAGATTCAGATTCAAATT
Found at i:70068034 original size:19 final size:19
Alignment explanation
Indices: 70067988--70068035 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
70067978 ATACAGTTTT
* *
70067988 AGATTCAGATTCAGATATC
1 AGATGCAGATTCAAATATC
*
70068007 AGATTCAGATTCAAAT-TC
1 AGATGCAGATTCAAATATC
70068025 AGATAGCAGAT
1 AGAT-GCAGAT
70068036 ATGCAAAACT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 6 0.23
19 20 0.77
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.29
Consensus pattern (19 bp):
AGATGCAGATTCAAATATC
Found at i:70080044 original size:17 final size:17
Alignment explanation
Indices: 70080022--70080063 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
70080012 GGTTGGGCCG
70080022 TGTGGGCCACATGAGCA
1 TGTGGGCCACATGAGCA
70080039 TGTGGGCCACATGAGCA
1 TGTGGGCCACATGAGCA
*
70080056 TGTAGGCC
1 TGTGGGCC
70080064 CATTTTCTAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.21, C:0.24, G:0.36, T:0.19
Consensus pattern (17 bp):
TGTGGGCCACATGAGCA
Found at i:70082967 original size:26 final size:28
Alignment explanation
Indices: 70082914--70082973 Score: 88
Period size: 26 Copynumber: 2.2 Consensus size: 28
70082904 TATATTTTTA
70082914 ATTTTTTAAATAAATAAAAAATAAAAAAT
1 ATTTTTTAAATAAAT-AAAAATAAAAAAT
*
70082943 ATTTTTTAAA-AAAT-AAAATAGAAAAT
1 ATTTTTTAAATAAATAAAAATAAAAAAT
70082969 ATTTT
1 ATTTT
70082974 CAGAAATTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 16 0.53
28 4 0.13
29 10 0.33
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (28 bp):
ATTTTTTAAATAAATAAAAATAAAAAAT
Found at i:70083102 original size:18 final size:18
Alignment explanation
Indices: 70083076--70083111 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
70083066 GGAATTAAAT
*
70083076 TTAAATAAAAATATTTTG
1 TTAAATAAAAATAATTTG
*
70083094 TTAATTAAAAATAATTTG
1 TTAAATAAAAATAATTTG
70083112 AATCAAACTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (18 bp):
TTAAATAAAAATAATTTG
Found at i:70085825 original size:22 final size:24
Alignment explanation
Indices: 70085784--70085827 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
70085774 TAAAATGATG
*
70085784 ATAATTTTTCTTTTTTAAAATACA
1 ATAATTTTTCTTTTTGAAAATACA
70085808 ATAA-TTTT-TTTTTGAAAATA
1 ATAATTTTTCTTTTTGAAAATA
70085828 ATGGAGGAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 11 0.58
23 4 0.21
24 4 0.21
ACGTcount: A:0.39, C:0.05, G:0.02, T:0.55
Consensus pattern (24 bp):
ATAATTTTTCTTTTTGAAAATACA
Found at i:70087319 original size:37 final size:38
Alignment explanation
Indices: 70087278--70087360 Score: 93
Period size: 37 Copynumber: 2.2 Consensus size: 38
70087268 TTTTAAATAT
* *
70087278 TAAAAATATTAAAA-TTTATATAA-ACTTATAA-AAATTA
1 TAAAAATATTAAAAGCTTATA-AATA-TAATAATAAATTA
*
70087315 TAAAAA-AATAAAAGCTTATAAATATAATAATAAATTA
1 TAAAAATATTAAAAGCTTATAAATATAATAATAAATTA
70087352 TAAAAATAT
1 TAAAAATAT
70087361 AATAAATTGA
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
36 13 0.34
37 24 0.63
38 1 0.03
ACGTcount: A:0.63, C:0.02, G:0.01, T:0.34
Consensus pattern (38 bp):
TAAAAATATTAAAAGCTTATAAATATAATAATAAATTA
Found at i:70087761 original size:11 final size:10
Alignment explanation
Indices: 70087736--70087797 Score: 56
Period size: 10 Copynumber: 6.3 Consensus size: 10
70087726 GACTTTTTCG
*
70087736 TAATTTTTAA
1 TAATTTTTTA
*
70087746 TATTTTTTTA
1 TAATTTTTTA
*
70087756 TAATTTATTA
1 TAATTTTTTA
* *
70087766 GAATTTATTA
1 TAATTTTTTA
70087776 T-A-TTTTTA
1 TAATTTTTTA
70087784 TAAGTTTTTTA
1 TAA-TTTTTTA
70087795 TAA
1 TAA
70087798 AAATCTAAAT
Statistics
Matches: 42, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
8 6 0.14
9 2 0.05
10 25 0.60
11 9 0.21
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (10 bp):
TAATTTTTTA
Found at i:70087900 original size:9 final size:9
Alignment explanation
Indices: 70087888--70087948 Score: 52
Period size: 9 Copynumber: 6.7 Consensus size: 9
70087878 TCTATTATTT
70087888 TTTTTATAA
1 TTTTTATAA
70087897 TTTTTATACA
1 TTTTTATA-A
*
70087907 TTTATATCAA
1 TTTTTAT-AA
* *
70087917 TTTTGA-GA
1 TTTTTATAA
*
70087925 TTTTTTTAA
1 TTTTTATAA
*
70087934 TATTTATAA
1 TTTTTATAA
70087943 TTTTTA
1 TTTTTA
70087949 ATATTTATAA
Statistics
Matches: 39, Mismatches: 10, Indels: 6
0.71 0.18 0.11
Matches are distributed among these distances:
8 5 0.13
9 21 0.54
10 12 0.31
11 1 0.03
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.62
Consensus pattern (9 bp):
TTTTTATAA
Found at i:70087948 original size:16 final size:16
Alignment explanation
Indices: 70087927--70087965 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
70087917 TTTTGAGATT
70087927 TTTTTAATATTTATAA
1 TTTTTAATATTTATAA
70087943 TTTTTAATATTTATAA
1 TTTTTAATATTTATAA
*
70087959 GTTTTAA
1 TTTTTAA
70087966 AGAATTTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (16 bp):
TTTTTAATATTTATAA
Found at i:70088091 original size:9 final size:9
Alignment explanation
Indices: 70088047--70088158 Score: 75
Period size: 9 Copynumber: 11.8 Consensus size: 9
70088037 AATTTATTAG
70088047 ATTTTTATA
1 ATTTTTATA
*
70088056 ATATTTATA
1 ATTTTTATA
*
70088065 AGTTTTTTTTATT
1 A----TTTTTATA
*
70088078 TTTTTTATA
1 ATTTTTATA
70088087 ATTTTATATA
1 ATTTT-TATA
*
70088097 AATTTTA-A
1 ATTTTTATA
70088105 ATTTTTAATA
1 ATTTTT-ATA
70088115 ATTTTTATA
1 ATTTTTATA
70088124 A-TTTTATAA
1 ATTTTTAT-A
* *
70088133 ATGTTTCTA
1 ATTTTTATA
*
70088142 ATTGTTTATT
1 ATT-TTTATA
70088152 ATTTTTA
1 ATTTTTA
70088159 ATATTTATCG
Statistics
Matches: 80, Mismatches: 13, Indels: 20
0.71 0.12 0.18
Matches are distributed among these distances:
8 12 0.15
9 36 0.45
10 26 0.32
13 6 0.08
ACGTcount: A:0.32, C:0.01, G:0.03, T:0.64
Consensus pattern (9 bp):
ATTTTTATA
Found at i:70088133 original size:28 final size:26
Alignment explanation
Indices: 70088079--70088164 Score: 91
Period size: 28 Copynumber: 3.1 Consensus size: 26
70088069 TTTTTTATTT
*
70088079 TTTTTATAATTTTATATAAATTTTAAA
1 TTTTTATAATTTT-TATAATTTTTAAA
70088106 TTTTTAATAATTTTTATAATTTTATAAA
1 TTTTT-ATAATTTTTATAATTTT-TAAA
* * *
70088134 TGTTTCTAATTGTTTATTATTTTTAATA
1 TTTTTATAATT-TTTATAATTTTTAA-A
70088162 TTT
1 TTT
70088165 ATCGAAAAAT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
27 21 0.42
28 29 0.58
ACGTcount: A:0.34, C:0.01, G:0.02, T:0.63
Consensus pattern (26 bp):
TTTTTATAATTTTTATAATTTTTAAA
Found at i:70088156 original size:37 final size:36
Alignment explanation
Indices: 70088070--70088158 Score: 101
Period size: 37 Copynumber: 2.4 Consensus size: 36
70088060 TTATAAGTTT
*
70088070 TTTTTATTTTTTTTATAATTTTATATAAATTTTAAA
1 TTTTTATTATTTTTATAATTTTATATAAATTTTAAA
* *
70088106 TTTTTAATAATTTTTATAA-TTT-TATAAATGTTTCTAA
1 TTTTT-ATTATTTTTATAATTTTATATAAAT-TTT-AAA
70088143 TTGTTTATTATTTTTA
1 TT-TTTATTATTTTTA
70088159 ATATTTATCG
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
35 7 0.16
36 11 0.24
37 24 0.53
38 3 0.07
ACGTcount: A:0.31, C:0.01, G:0.02, T:0.65
Consensus pattern (36 bp):
TTTTTATTATTTTTATAATTTTATATAAATTTTAAA
Found at i:70089877 original size:19 final size:19
Alignment explanation
Indices: 70089853--70089892 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
70089843 ATTAATTTTG
70089853 ATCAAGTAAAATT-AAATTA
1 ATCAAGT-AAATTAAAATTA
*
70089872 ATCAAGTTAATTAAAATTA
1 ATCAAGTAAATTAAAATTA
70089891 AT
1 AT
70089893 ATGGTATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.35
Consensus pattern (19 bp):
ATCAAGTAAATTAAAATTA
Found at i:70090284 original size:17 final size:17
Alignment explanation
Indices: 70090262--70090335 Score: 50
Period size: 17 Copynumber: 4.5 Consensus size: 17
70090252 ATTTTAATAG
70090262 TTTAATATTAAATTTAA
1 TTTAATATTAAATTTAA
*
70090279 TTTAATACTT--ATCATAA
1 TTTAATA-TTAAAT-TTAA
* **
70090296 --TAGTATTTTAT-TAA
1 TTTAATATTAAATTTAA
*
70090310 TTTAATATTAAATTTAT
1 TTTAATATTAAATTTAA
70090327 TTTAATATT
1 TTTAATATT
70090336 TATCTTATGG
Statistics
Matches: 44, Mismatches: 6, Indels: 14
0.69 0.09 0.22
Matches are distributed among these distances:
14 5 0.11
15 4 0.09
16 12 0.27
17 21 0.48
18 2 0.05
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.55
Consensus pattern (17 bp):
TTTAATATTAAATTTAA
Found at i:70096864 original size:39 final size:40
Alignment explanation
Indices: 70096769--70097030 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
70096759 TTGAATGATG
70096769 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTGAG-TGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGAT-ACTAAT
*
70096807 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
70096848 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
70096887 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
70096926 TTCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
70096965 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
70097004 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
70097031 AACGAGGAGC
Statistics
Matches: 202, Mismatches: 12, Indels: 17
0.87 0.05 0.07
Matches are distributed among these distances:
39 130 0.64
40 62 0.31
41 10 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:70104879 original size:39 final size:40
Alignment explanation
Indices: 70104784--70105045 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
70104774 TTGAATGATG
70104784 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTGAG-TGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGAT-ACTAAT
*
70104822 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
70104863 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
70104902 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
70104941 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
70104980 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
70105019 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
70105046 AACGAGGAGC
Statistics
Matches: 202, Mismatches: 12, Indels: 17
0.87 0.05 0.07
Matches are distributed among these distances:
39 130 0.64
40 62 0.31
41 10 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:70109750 original size:23 final size:21
Alignment explanation
Indices: 70109716--70109762 Score: 51
Period size: 21 Copynumber: 2.1 Consensus size: 21
70109706 GGAAATTGAA
70109716 TAGAAATGAAGTATGAATTGAGT
1 TAGAAATGAAG--TGAATTGAGT
*
70109739 TAGAAA-GTAAGTGAATTTAGT
1 TAGAAATG-AAGTGAATTGAGT
70109760 TAG
1 TAG
70109763 GATTAAATTC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
21 12 0.55
22 1 0.05
23 9 0.41
ACGTcount: A:0.43, C:0.00, G:0.26, T:0.32
Consensus pattern (21 bp):
TAGAAATGAAGTGAATTGAGT
Found at i:70125838 original size:43 final size:43
Alignment explanation
Indices: 70125774--70125919 Score: 229
Period size: 43 Copynumber: 3.4 Consensus size: 43
70125764 TTAAAAAAAA
70125774 AAACGCCGCTAAAGGTCGTGGCCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGGTCGTGGCCTTTAGCGGCGCTTTTCCCAC
*
70125817 AAACGCCGCTAAAGGTTGTGGCCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGGTCGTGGCCTTTAGCGGCGCTTTTCCCAC
* *** * *
70125860 AAATGCCGCTAAAGGTCGCAACCCTTAGCGACGCTTTTCCCAC
1 AAACGCCGCTAAAGGTCGTGGCCTTTAGCGGCGCTTTTCCCAC
70125903 AAACGCCGCTAAAGGTC
1 AAACGCCGCTAAAGGTC
70125920 ATGAAATTTT
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 94 1.00
ACGTcount: A:0.23, C:0.32, G:0.23, T:0.22
Consensus pattern (43 bp):
AAACGCCGCTAAAGGTCGTGGCCTTTAGCGGCGCTTTTCCCAC
Done.